Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27087447	27087447	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_006015.4	+1	reviewed	p.S674fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27100341	27100356	+	Frame_Shift_Del	DEL	CAGCCCCTTCCCCAGC	CAGCCCCTTCCCCAGC	-	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	CAGCCCCTTCCCCAGC	CAGCCCCTTCCCCAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_006015.4	+1	reviewed	p.P1353fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.784:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35476599	35476599	+	Silent	SNP	C	C	G	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_007167.3	-1	validated	p.A367	0.171	79	0%	90	30%	1	100%	-	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39838158	39838158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_033044.2	+1	reviewed	p.L2808P	0.998	234	0%	266	40.2%	1	100%	possibly_damaging(0.736)	tolerated(0.09)	deleterious(0.566)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SZT2	23334	genome.wustl.edu	37	1	43904382	43904382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_015284.2	+1	predicted	p.T1275M	1.000	98	0%	127	34.6%	8	37.5%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
NEGR1	257194	genome.wustl.edu	37	1	72076784	72076784	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_173808.2	-1	validated	p.G238fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
CELSR2	1952	genome.wustl.edu	37	1	109793851	109793851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_001408.2	+1	reviewed	p.A384T	0.097	131	0%	165	44.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
F5	2153	genome.wustl.edu	37	1	169498898	169498898	+	Silent	SNP	T	T	C	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_000130.4	-1	reviewed	p.R1789	0.051	343	0%	340	35.6%	0	-	-	-	-	superfamily_Cupredoxins
RABGAP1L	9910	genome.wustl.edu	37	1	174210688	174210688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_014857.3	+1	validated	p.R204C	1.000	206	0%	266	38.7%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
IGFN1	91156	genome.wustl.edu	37	1	201181883	201181883	+	Silent	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	ENST00000412892	+1	known	p.D38	0.000	92	0%	90	35.6%	0	-	benign(0.03)	-	-	NULL
USH2A	7399	genome.wustl.edu	37	1	216373152	216373152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_206933.2	-1	reviewed	p.L1210M	1.000	117	0%	135	36.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases
FMN2	56776	genome.wustl.edu	37	1	240371223	240371223	+	Silent	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_020066.4	+1	validated	p.P1037	0.004	18	0%	21	28.6%	0	-	-	-	-	HMMSmart_FH2,HMMPfam_Drf_FH1
OR2M4	26245	genome.wustl.edu	37	1	248402903	248402903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_017504.1	+1	provisional	p.V225I	0.003	202	0%	234	41.9%	0	-	benign(0.155)	tolerated(0.13)	neutral(0.266)	HMMPfam_7tm_1,superfamily_SSF81321
MXD1	4084	genome.wustl.edu	37	2	70164448	70164448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_002357.2	+1	reviewed	p.E134K	1.000	64	0%	85	29.4%	51	33.3%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	superfamily_HLH_basic
BBS5	129880	genome.wustl.edu	37	2	170349400	170349400	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_152384.2	+1	reviewed	p.K135Q	1.000	178	0%	296	55.4%	0	-	probably_damaging(0.994)	tolerated(0.18)	deleterious(0.508)	HMMPfam_DUF1448
COL3A1	1281	genome.wustl.edu	37	2	189856426	189856426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_000090.3	+1	reviewed	p.R310Q	1.000	137	0%	257	26.8%	515	4.2%	unknown(0)	tolerated(0.61)	-	HMMPfam_Collagen
PIKFYVE	200576	genome.wustl.edu	37	2	209167007	209167007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_015040.3	+1	reviewed	p.R417H	1.000	290	0%	408	64.7%	1	100%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	"HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
SPEG	10290	genome.wustl.edu	37	2	220347892	220347892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_005876.4	+1	validated	p.R1903W	1.000	8	0.000	10	0.600	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ROBO2	6092	genome.wustl.edu	37	3	77607268	77607268	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_002942.3	+1	reviewed	p.E469*	1.000	94	0%	116	41.4%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_006218.2	+1	reviewed	p.E545K	1.000	205	0%	351	67.2%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
SENP5	205564	genome.wustl.edu	37	3	196626857	196626857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_152699.4	+1	validated	p.R561H	0.926	191	0%	368	67.4%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cysteine proteinases
PROM1	8842	genome.wustl.edu	37	4	16035059	16035059	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_006017.2	-1	reviewed	p.V126G	1.000	237	0%	223	39%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Prominin
NOA1	84273	genome.wustl.edu	37	4	57830593	57830593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_032313.2	-1	provisional	p.D622N	1.000	168	0%	182	40.7%	30	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC100287782	100287782	genome.wustl.edu	37	4	99877753	99877756	+	Frame_Shift_Del	DEL	AAAA	AAAA	-	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	XM_002342458.1	+1	model	p.K78fs	0.064:0.068:0.071:0.074	-	-	-	-	-	-	-	-	-	NULL
FAT4	79633	genome.wustl.edu	37	4	126337624	126337624	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_024582.4	+1	validated	p.R2289*	1.000	285	0.4%	342	35.1%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
RBM46	166863	genome.wustl.edu	37	4	155720561	155720563	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	CAA	CAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_144979.3	+1	validated	p.T418in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
UFSP2	55325	genome.wustl.edu	37	4	186339751	186339751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_018359.3	-1	validated	p.R86C	1.000	152	0%	157	42%	2	50%	probably_damaging(0.983)	deleterious(0.05)	deleterious(0.774)	NULL
FAT2	2196	genome.wustl.edu	37	5	150908759	150908759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_001447.2	-1	reviewed	p.V3336L	0.485	123	0%	130	42.3%	11	36.3%	possibly_damaging(0.489)	tolerated(0.69)	neutral(0.165)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
HNRNPAB	3182	genome.wustl.edu	37	5	177636363	177636364	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_031266.2	+1	reviewed	p.Y234fs	0.994:1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF54928
LRFN2	57497	genome.wustl.edu	37	6	40360309	40360309	+	Silent	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_020737.1	-1	provisional	p.G581	0.687	12	0%	19	31.6%	13	61.5%	-	-	-	NULL
STXBP5	134957	genome.wustl.edu	37	6	147646170	147646170	+	Silent	SNP	A	A	G	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_001127715.1	+1	reviewed	p.G626	1.000	127	0%	190	62.1%	1	0%	-	-	-	NULL
TCP10L2	401285	genome.wustl.edu	37	6	167585711	167585711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_001145121.1	+1	inferred	p.A27S	0.000	56	0%	87	32.2%	0	-	benign(0.394)	tolerated(0.55)	neutral(0.134)	NULL
NOD1	10392	genome.wustl.edu	37	7	30491197	30491197	+	Silent	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_006092.2	-1	reviewed	p.A612	0.719	31	0%	31	32.3%	2	50%	-	-	-	NULL
BMPER	168667	genome.wustl.edu	37	7	34118743	34118743	+	Silent	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_133468.3	+1	validated	p.A451	0.849	10	0%	10	40%	0	-	-	-	-	HMMPfam_VWD,HMMSmart_VWD
TMEM213	155006	genome.wustl.edu	37	7	138486104	138486104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_001085429.1	+1	validated	p.A39T	0.000	81	0%	92	42.4%	3	66.6%	possibly_damaging(0.93)	tolerated(0.77)	neutral(0.378)	NULL
CYP7A1	1581	genome.wustl.edu	37	8	59409582	59409582	+	Silent	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_000780.3	-1	reviewed	p.T163	0.000	195	0%	320	32.5%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
SULF1	23213	genome.wustl.edu	37	8	70536308	70536308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_001128204.1	+1	validated	p.R576C	1.000	61	0%	90	54.4%	67	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Alkaline_phosphatase_core
PEX2	5828	genome.wustl.edu	37	8	77895794	77895794	+	Silent	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_000318.2	-1	reviewed	p.L207	0.981	89	0%	126	25.4%	28	39.2%	-	-	-	HMMPfam_Pex2_Pex12
WNK2	65268	genome.wustl.edu	37	9	95992058	95992058	+	Silent	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	ENST00000432730	+1	known	p.S250L	0.618	49	0%	46	54.3%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TBC1D2	55357	genome.wustl.edu	37	9	101006390	101006390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_018421.3	-1	validated	p.E178G	0.995	63	0%	77	42.9%	34	35.2%	benign(0.167)	tolerated(0.17)	neutral(0.074)	NULL
CACNA1B	774	genome.wustl.edu	37	9	141015984	141015984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_000718.2	+1	validated	p.G2185S	0.736	55	0%	67	41.8%	0	-	benign(0.039)	tolerated(0.14)	neutral(0.252)	NULL
LOC100131416	100131416	genome.wustl.edu	37	11	64877427	64877427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	XM_001716064.2	-1	model	p.V252I	0.000	17	0%	12	50%	0	-	-	-	-	NULL
PELI3	246330	genome.wustl.edu	37	11	66241248	66241248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_145065.2	+1	validated	p.D231G	1.000	51	0%	60	33.3%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pellino
FAT3	120114	genome.wustl.edu	37	11	92613994	92613994	+	Silent	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_001008781.2	+1	validated	p.C4075	0.891	139	0%	164	49.4%	0	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
ROBO4	54538	genome.wustl.edu	37	11	124763783	124763783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_019055.5	-1	validated	p.R493C	0.999	48	0%	56	39.3%	10	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KRAS	3845	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T	rs112445441	byCluster	TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_033360.2	-1	reviewed	p.G13D	1.000	254	0%	356	66%	7	57.1%	benign(0.184)	deleterious(0)	neutral(0.462)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACVR1B	91	genome.wustl.edu	37	12	52374786	52374786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_004302.3	+1	reviewed	p.R205Q	1.000	206	0%	258	37.2%	2	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like)
LRP1	4035	genome.wustl.edu	37	12	57566958	57566958	+	Silent	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_002332.2	+1	reviewed	p.R1057	0.873	42	0%	43	39.5%	35	25.7%	-	-	-	NULL
C12orf42	374470	genome.wustl.edu	37	12	103872202	103872202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_001099336.1	-1	validated	p.M1I	0.001	368	0%	409	35.5%	0	-	benign(0.004)	-	-	NULL
COL4A1	1282	genome.wustl.edu	37	13	110818594	110818594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_001845.4	-1	reviewed	p.V1336I	0.000	275	0%	341	41.9%	55	0%	benign(0.094)	tolerated(0.4)	neutral(0.023)	HMMPfam_Collagen
ING1	3621	genome.wustl.edu	37	13	111372025	111372025	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_005537.3	+1	reviewed	p.R339*	0.949	34	0%	32	78.1%	150	95.3%	-	-	-	NULL
DPF3	8110	genome.wustl.edu	37	14	73198520	73198520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_012074.3	-1	provisional	p.I142V	0.997	133	0%	142	37.3%	1	0%	possibly_damaging(0.598)	tolerated(0.29)	neutral(0.236)	NULL
MYO1E	4643	genome.wustl.edu	37	15	59523959	59523959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_004998.2	-1	validated	p.P151L	1.000	129	0%	149	40.3%	20	45%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
BAIAP3	8938	genome.wustl.edu	37	16	1396451	1396451	+	Silent	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_003933.3	+1	reviewed	p.G869	0.213	48	0%	105	18.1%	3	0%	-	-	-	NULL
ITGAX	3687	genome.wustl.edu	37	16	31373450	31373450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_000887.3	+1	reviewed	p.L381M	0.999	172	0%	416	21.2%	0	-	probably_damaging(0.994)	tolerated(0.11)	deleterious(0.724)	superfamily_SSF69318
WSCD1	23302	genome.wustl.edu	37	17	6023636	6023636	+	Silent	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_015253.1	+1	validated	p.P461	0.030	53	0%	50	24%	0	-	-	-	-	superfamily_SSF52540
ASGR2	433	genome.wustl.edu	37	17	7005500	7005500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_001181.3	-1	reviewed	p.H227Y	0.124	220	0%	288	42%	1	0%	benign(0.008)	tolerated(0.72)	neutral(0.002)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ATPAF2	91647	genome.wustl.edu	37	17	17924457	17924457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_145691.3	-1	reviewed	p.R238C	0.991	46	0%	36	27.8%	83	40.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RNF112	7732	genome.wustl.edu	37	17	19318389	19318389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_007148.4	+1	reviewed	p.V390I	0.553	11	0.000	8	0.500	0	-	-	-	-	superfamily_SSF52540
KANSL1	284058	genome.wustl.edu	37	17	44110560	44110560	+	Splice_Site	SNP	T	T	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_015443.2	-1	validated	e12-2	1.000	139	0%	154	40.9%	7	85.7%	-	-	-	-
SPOP	8405	genome.wustl.edu	37	17	47696716	47696716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_001007226.1	-1	reviewed	p.E78K	1.000	195	0%	198	42.4%	9	33.3%	benign(0.02)	tolerated(0.07)	neutral(0.320)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
MED16	10025	genome.wustl.edu	37	19	875396	875396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_005481.2	-1	validated	p.T540M	0.995	76	0%	55	38.2%	126	38%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
KLK11	11012	genome.wustl.edu	37	19	51527512	51527512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_144947.1	-1	reviewed	p.E116D	1.000	222	0%	247	44.1%	1	0%	possibly_damaging(0.876)	deleterious(0.01)	deleterious(0.747)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SLC9A7	84679	genome.wustl.edu	37	X	46502752	46502752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_032591.1	-1	reviewed	p.T511M	1.000	105	0%	125	55.2%	35	0%	possibly_damaging(0.868)	deleterious(0)	deleterious(0.782)	HMMPfam_Na_H_Exchanger
NONO	4841	genome.wustl.edu	37	X	70511818	70511818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_001145408.1	+1	reviewed	p.R115H	1.000	185	0%	276	32.2%	113	92.9%	benign(0.232)	deleterious(0.01)	neutral(0.429)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ABCD1	215	genome.wustl.edu	37	X	152991142	152991142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A168-01A-31D-A12J-09	TCGA-D1-A168-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	032c177b-f995-463d-aacc-b0f94d91af7c	98cf30a6-6082-4b42-8dc3-1afdb6ec3ef4	NM_000033.3	+1	reviewed	p.A141T	1.000	29	0%	29	55.2%	14	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_ABC_membrane_2
