Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27106354	27106354	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_006015.4	+1	reviewed	p.R1989*	1.000	175	0.6%	186	38.2%	46	47.8%	-	-	-	NULL
S100A5	6276	genome.wustl.edu	37	1	153512666	153512666	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_002962.1	-1	reviewed	p.M19K	0.985	185	0%	309	18.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF47473
INSRR	3645	genome.wustl.edu	37	1	156823974	156823974	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_014215.1	-1	validated	p.R69	0.009	80	0%	120	22.5%	0	-	-	-	-	HMMPfam_Recep_L_domain,superfamily_SSF52058
OR2B11	127623	genome.wustl.edu	37	1	247614762	247614762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_001004492.1	-1	provisional	p.R175W	0.050	53	0%	90	65.6%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_7tm_1,superfamily_SSF81321
HS1BP3	64342	genome.wustl.edu	37	2	20845137	20845137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_022460.3	-1	reviewed	p.S54L	0.996	63	0%	42	38.1%	14	35.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
CEP68	23177	genome.wustl.edu	37	2	65296771	65296771	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_015147.2	+1	validated	p.T65S	0.705	38	0%	30	30%	3	0%	benign(0.001)	tolerated(0.53)	neutral(0.007)	NULL
FIGLA	344018	genome.wustl.edu	37	2	71014860	71014860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_001004311.3	-1	reviewed	p.S102N	1.000	305	0%	308	34.7%	0	-	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
PLCD4	84812	genome.wustl.edu	37	2	219487535	219487535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_032726.2	+1	provisional	p.K236Q	0.997	196	0%	216	35.2%	0	-	benign(0.055)	tolerated(0.34)	neutral(0.026)	HMMPfam_efhand_like,superfamily_EF-hand
TRIP12	9320	genome.wustl.edu	37	2	230654405	230654406	+	In_Frame_Ins	INS	-	-	ACTGCT	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_004238.1	-1	provisional	p.F1464in_frame_insLAV	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ATRIP	84126	genome.wustl.edu	37	3	48501272	48501272	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_130384.1	+1	reviewed	p.E338*	0.997	200	0%	206	29.6%	3	0%	-	-	-	NULL
CEP97	79598	genome.wustl.edu	37	3	101476586	101476586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_024548.2	+1	provisional	p.R379Q	0.998	250	0%	310	36.8%	1	100%	possibly_damaging(0.775)	deleterious(0.01)	deleterious(0.694)	NULL
CCDC80	151887	genome.wustl.edu	37	3	112335607	112335607	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	ENST00000461431	-1	known	p.H155N	0.995	430	0%	496	29.8%	3	0%	-	-	-	NULL
UPK1B	7348	genome.wustl.edu	37	3	118913098	118913098	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_006952.3	+1	reviewed	p.D167	1.000	214	0%	195	30.8%	122	50%	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
PIK3CA	5290	genome.wustl.edu	37	3	178936092	178936092	+	Missense_Mutation	SNP	A	A	G	rs121913274	byCluster	TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_006218.2	+1	reviewed	p.E545G	1.000	217	0%	291	75.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
EHHADH	1962	genome.wustl.edu	37	3	184922447	184922447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_001966.3	-1	reviewed	p.Q223K	0.000	68	0%	98	82.7%	0	-	benign(0)	tolerated(1)	-	superfamily_SSF52096
METTL14	57721	genome.wustl.edu	37	4	119626803	119626803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_020961.2	+1	provisional	p.R298P	1.000	335	0%	421	33.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MT-A70
POU4F2	5458	genome.wustl.edu	37	4	147561836	147561836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_004575.2	+1	validated	p.R369Q	1.000	43	0%	64	32.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
RXFP3	51289	genome.wustl.edu	37	5	33937169	33937169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_016568.3	+1	validated	p.S108R	0.974	140	0%	142	39.4%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	HMMPfam_7tm_1,superfamily_SSF81321
MEGF10	84466	genome.wustl.edu	37	5	126732304	126732304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_032446.2	+1	validated	p.G165R	1.000	34	0%	28	60.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_EGF/Laminin
PCDHA10	56139	genome.wustl.edu	37	5	140235814	140235814	+	Missense_Mutation	SNP	C	C	T	rs17844338		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_018901.2	+1	reviewed	p.R61C	0.675	37	0%	28	64.3%	0	-	possibly_damaging(0.731)	deleterious(0)	deleterious(0.712)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHB10	56126	genome.wustl.edu	37	5	140572937	140572937	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_018930.3	+1	reviewed	p.S271C	0.035	209	0%	195	40.5%	2	0%	benign(0.149)	tolerated(0.11)	neutral(0.285)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CAMK2A	815	genome.wustl.edu	37	5	149630366	149630366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_015981.3	-1	reviewed	p.S234L	1.000	192	0%	178	45.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NQO2	4835	genome.wustl.edu	37	6	3019830	3019830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_000904.3	+1	validated	p.Q213K	0.854	141	0%	158	38.6%	61	52.4%	benign(0)	tolerated(0.81)	neutral(0.001)	HMMPfam_Flavodoxin_2,superfamily_Flavoproteins
ARHGAP18	93663	genome.wustl.edu	37	6	129937355	129937374	+	Frame_Shift_Del	DEL	CCTACCTACTTTTTGAAAGA	CCTACCTACTTTTTGAAAGA	-	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	CCTACCTACTTTTTGAAAGA	CCTACCTACTTTTTGAAAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_033515.2	-1	validated	p.I345fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SYNE1	23345	genome.wustl.edu	37	6	152539417	152539417	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_182961.2	-1	reviewed	p.I7389S	1.000	368	0%	440	40%	1	0%	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
IMPDH1	3614	genome.wustl.edu	37	7	128038592	128038592	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_000883.3	-1	reviewed	p.D317V	1.000	50	0%	59	33.9%	46	43.4%	benign(0.01)	tolerated(0.07)	neutral(0.320)	HMMPfam_CBS,HMMSmart_CBS,HMMPfam_IMPDH,superfamily_SSF51412,superfamily_SSF54631
FAM135B	51059	genome.wustl.edu	37	8	139163511	139163511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_015912.3	-1	validated	p.Q1069H	0.915	98	0%	151	45.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DENND4C	55667	genome.wustl.edu	37	9	19336368	19336368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_017925.4	+1	provisional	p.P661L	0.994	176	0%	246	35%	0	-	benign(0.057)	tolerated(0.11)	neutral(0.275)	NULL
ZNF462	58499	genome.wustl.edu	37	9	109687792	109687792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_021224.4	+1	validated	p.M533I	0.076	129	0%	87	36.8%	0	-	unknown(0)	deleterious(0)	-	superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109690479	109690479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_021224.4	+1	validated	p.C1429F	1.000	44	0%	54	31.5%	0	-	possibly_damaging(0.722)	deleterious(0)	deleterious(0.707)	superfamily_beta-sandwich domain of Sec23/24
SVEP1	79987	genome.wustl.edu	37	9	113169695	113169695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_153366.3	-1	validated	p.R2729C	1.000	98	0%	85	38.8%	0	-	probably_damaging(0.968)	deleterious(0.05)	deleterious(0.755)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
RC3H2	54542	genome.wustl.edu	37	9	125642036	125642036	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_001100588.1	-1	validated	p.Q404*	1.000	157	0%	182	33.5%	1	0%	-	-	-	NULL
TTC16	158248	genome.wustl.edu	37	9	130489637	130489637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_144965.1	+1	provisional	p.E553K	0.000	46	0%	46	41.3%	0	-	benign(0.142)	tolerated(0.1)	neutral(0.298)	NULL
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	ENST00000371953	+1	known	p.R130G	1.000	406	0%	462	72.7%	13	61.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
SFXN3	81855	genome.wustl.edu	37	10	102798430	102798430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_030971.3	+1	validated	p.V272M	1.000	967	0%	992	39.4%	5	20%	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMPfam_Mtc
CPXM2	119587	genome.wustl.edu	37	10	125539687	125539687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_198148.2	-1	validated	p.R325H	1.000	447	0%	605	30.6%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
OR5A1	219982	genome.wustl.edu	37	11	59211092	59211092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_001004728.1	+1	provisional	p.A151S	0.012	214	0%	291	33.7%	0	-	probably_damaging(0.987)	tolerated(1)	neutral(0.436)	HMMPfam_7tm_1,superfamily_SSF81321
ABCG4	64137	genome.wustl.edu	37	11	119031662	119031662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_001142505.1	+1	reviewed	p.R596H	0.000	138	0%	148	47.3%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
NLRX1	79671	genome.wustl.edu	37	11	119044726	119044726	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_024618.2	+1	reviewed	p.T256	0.008	100	1%	110	25.5%	3	0%	-	-	-	HMMPfam_NACHT
DDX54	79039	genome.wustl.edu	37	12	113612727	113612727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_001111322.1	-1	reviewed	p.V297M	0.997	38	0%	33	48.5%	28	35.7%	benign(0.057)	tolerated(0.09)	neutral(0.300)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
WDR66	144406	genome.wustl.edu	37	12	122406048	122406048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_144668.4	+1	validated	p.S915L	0.994	63	0%	55	27.3%	7	57.1%	possibly_damaging(0.748)	tolerated(0.14)	deleterious(0.524)	HMMSmart_SM00320,superfamily_WD40 repeat-like
VPS36	51028	genome.wustl.edu	37	13	53001185	53001185	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_016075.2	-1	validated	p.E193A	1.000	671	0%	726	37.9%	6	33.3%	benign(0.001)	tolerated(1)	-	HMMPfam_EAP30
MAX	4149	genome.wustl.edu	37	14	65544747	65544747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_002382.3	-1	reviewed	p.R60Q	1.000	313	0%	349	37.2%	26	34.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
SMOC1	64093	genome.wustl.edu	37	14	70459136	70459136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_001034852.1	+1	validated	p.D177N	1.000	338	0%	443	35.7%	0	-	possibly_damaging(0.8)	tolerated(0.52)	neutral(0.309)	NULL
AMN	81693	genome.wustl.edu	37	14	103396967	103396968	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_030943.3	+1	reviewed	p.H438fs	0.001:0.001	-	-	-	-	-	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34060896	34060896	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_001036.3	+1	validated	p.I2915L	1.000	368	0%	418	38.3%	0	-	benign(0.019)	-	-	NULL
RPL3L	6123	genome.wustl.edu	37	16	1996980	1996980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_005061.2	-1	reviewed	p.G270R	1.000	35	0%	28	25%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Ribosomal_L3,superfamily_Translat_factor
ABCA3	21	genome.wustl.edu	37	16	2328319	2328319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_001089.2	-1	reviewed	p.S1563Y	0.957	55	0%	37	10.8%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC728888	728888	genome.wustl.edu	37	16	29394565	29394565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	XM_002343430.1	-1	model	p.R563H	0.000	34	0%	43	51.2%	3	66.6%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	HMMPfam_NPIP
TNFAIP1	7126	genome.wustl.edu	37	17	26668329	26668329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_021137.4	+1	reviewed	p.R148W	0.984	103	0%	101	35.6%	13	46.1%	possibly_damaging(0.952)	tolerated(0.11)	deleterious(0.667)	NULL
MYO19	80179	genome.wustl.edu	37	17	34852234	34852234	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_025109.5	-1	validated	p.H725L	1.000	172	0%	172	39%	61	42.6%	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
OSBPL7	114881	genome.wustl.edu	37	17	45890716	45890716	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_145798.2	-1	reviewed	p.A551	0.051	83	0%	88	13.6%	11	9%	-	-	-	HMMPfam_Oxysterol_BP
EPX	8288	genome.wustl.edu	37	17	56271331	56271331	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_000502.4	+1	reviewed	p.P158A	0.999	30	0%	33	51.5%	0	-	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
CEP192	55125	genome.wustl.edu	37	18	13056337	13056337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_032142.3	+1	validated	p.L654V	0.269	98	0%	112	41.1%	2	100%	benign(0.087)	deleterious(0)	neutral(0.451)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31326388	31326388	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_030632.1	+1	provisional	p.N2192	0.833	120	0%	136	38.2%	0	-	-	-	-	NULL
C18orf54	162681	genome.wustl.edu	37	18	51888167	51888167	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_173529.4	+1	validated	p.H146	0.015	165	0%	205	31.2%	0	-	-	-	-	NULL
LRG1	116844	genome.wustl.edu	37	19	4538014	4538014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_052972.2	-1	validated	p.R328C	0.208	25	0%	24	29.2%	59	45.7%	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	HMMSmart_LRRCT,superfamily_SSF52058
TYK2	7297	genome.wustl.edu	37	19	10475379	10475379	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_003331.4	-1	reviewed	p.L426	1.000	15	0%	18	44.4%	14	42.8%	-	-	-	NULL
SLC27A1	376497	genome.wustl.edu	37	19	17599717	17599717	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_198580.1	+1	provisional	p.L285	0.833	38	0%	32	50%	12	58.3%	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
LSR	51599	genome.wustl.edu	37	19	35758278	35758279	+	In_Frame_Ins	INS	-	-	GGC	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_205834.2	+1	validated	p.520in_frame_insR	0.995:0.996	-	-	-	-	-	-	-	-	-	NULL
SYMPK	8189	genome.wustl.edu	37	19	46333346	46333346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_004819.2	-1	reviewed	p.A572V	1.000	14	0%	25	20%	34	44.1%	possibly_damaging(0.604)	deleterious(0.01)	deleterious(0.615)	superfamily_ARM repeat
PRMT1	3276	genome.wustl.edu	37	19	50189361	50189361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_001536.3	+1	validated	p.I257M	1.000	93	0%	105	36.2%	389	40.3%	benign(0.023)	tolerated(0.08)	neutral(0.301)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
RBM39	9584	genome.wustl.edu	37	20	34297181	34297182	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_184234.1	-1	reviewed	p.I397fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PREX1	57580	genome.wustl.edu	37	20	47273645	47273645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_020820.3	-1	reviewed	p.S686P	0.953	66	0%	65	40%	4	0%	benign(0.068)	tolerated(0.12)	neutral(0.265)	HMMSmart_SM00228,superfamily_PDZ domain-like
SALL4	57167	genome.wustl.edu	37	20	50407891	50407891	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_020436.3	-1	reviewed	p.A377	0.003	104	0%	84	40.5%	1	0%	-	-	-	NULL
EIF3D	8664	genome.wustl.edu	37	22	36914916	36914916	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_003753.3	-1	reviewed	p.I251	1.000	149	0%	186	39.2%	143	38.4%	-	-	-	HMMPfam_eIF-3_zeta
FAM9B	171483	genome.wustl.edu	37	X	9001030	9001030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	ENST00000362066	-1	known	p.F45L	0.030	299	0%	253	46.2%	0	-	benign(0.009)	tolerated(0.61)	neutral(0.005)	NULL
BEND2	139105	genome.wustl.edu	37	X	18189184	18189184	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_153346.4	-1	validated	p.V708L	0.350	397	0%	365	32.3%	0	-	possibly_damaging(0.444)	deleterious(0)	deleterious(0.590)	HMMPfam_BEN
EFNB1	1947	genome.wustl.edu	37	X	68060379	68060379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_004429.4	+1	reviewed	p.T308I	1.000	24	0%	39	38.5%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM70A	55026	genome.wustl.edu	37	X	119445139	119445139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	NM_017938.3	-1	validated	p.R9Q	1.000	51	0%	47	34%	0	-	benign(0.126)	tolerated(0.2)	neutral(0.060)	NULL
HCFC1	3054	genome.wustl.edu	37	X	153219157	153219157	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17L-01A-11D-A12J-09	TCGA-D1-A17L-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	17dc148a-83b6-4b12-a68f-3bfc5e2e5d04	420fd141-f567-403a-b7b6-838c9937e2d4	ENST00000444191	-1	known	p.H41Y	0.157	58	0%	52	40.4%	21	61.9%	-	-	-	NULL
