FFPE Cases
FFPE description from TCGA Tissue Sample Requirements (2013)

FFPE (formalin fixed paraffin embedded) samples are not suitable for molecular analysis because the RNA and DNA are trapped in the nucleic acid-protein cross linking from the fixation process.

Table 1.  Get Full Table

Barcode UUID Date Type Category Notes
TCGA-A6-2672-01B-03D-2297-01 622b0cb2-6c15-42f3-b3ec-eff97d63797c 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-2672-01B-03D-2297-01 622b0cb2-6c15-42f3-b3ec-eff97d63797c 07/27/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A03_1147940.tangent.copynumber.data.txt'.
TCGA-A6-2672-01B-03D-2297-01 622b0cb2-6c15-42f3-b3ec-eff97d63797c 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A03_1147940.tangent.copynumber.data.txt'.
TCGA-A6-2672-01B-03D-2297-01 622b0cb2-6c15-42f3-b3ec-eff97d63797c 09/11/2012 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2004.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A03_1147940.tangent.copynumber.data.txt'.
TCGA-A6-2672-01B-03D-2297-01 622b0cb2-6c15-42f3-b3ec-eff97d63797c 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A03_1147940.tangent.copynumber.data.txt'.
TCGA-A6-2672-01B-03D-2298-08 ca943508-838b-4014-b577-8be89097933e 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-2672-01B-03D-2299-05 8faa0b30-e6e3-42aa-936b-ffd928bd1902 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-2672-01B-03D-2301-10 1241effb-2aef-4b12-b58b-69c8f2356a71 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-2672-01B-03R-2302-07 dcc36700-cd11-4235-a1a7-960c93fd88a8 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-2672-01B-03R-2303-13 b1a09e29-79ba-47c7-9d9c-fd47b3aae647 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-2677-01B-02D-A274-01 4be79593-92db-49f6-810c-2f4c6fb4d1b5 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B05_1347404.tangent.copynumber.data.txt'.
TCGA-A6-2677-01B-02D-A274-01 4be79593-92db-49f6-810c-2f4c6fb4d1b5 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B05_1347404.tangent.copynumber.data.txt'.
TCGA-A6-2677-10A-01D-A274-01 45315948-76f1-42ac-bacd-db8b92243d09 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B04_1347460.birdseed.data.txt'.
TCGA-A6-2677-10A-01D-A274-01 45315948-76f1-42ac-bacd-db8b92243d09 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B04_1347460.birdseed.data.txt'.
TCGA-A6-2684-01C-08D-A274-01 93718e05-a820-4e46-ac80-869463460c8a 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B03_1347356.tangent.copynumber.data.txt'.
TCGA-A6-2684-01C-08D-A274-01 93718e05-a820-4e46-ac80-869463460c8a 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B03_1347356.tangent.copynumber.data.txt'.
TCGA-A6-3809-01B-04D-A274-01 ca3428c3-9390-45df-b348-baac03d34360 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A11_1347320.tangent.copynumber.data.txt'.
TCGA-A6-3809-01B-04D-A274-01 ca3428c3-9390-45df-b348-baac03d34360 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A11_1347320.tangent.copynumber.data.txt'.
TCGA-A6-3810-01B-04D-A274-01 ae4bc42b-e969-4f86-95f0-fb38d7525c0b 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E06_1347418.tangent.copynumber.data.txt'.
TCGA-A6-3810-01B-04D-A274-01 ae4bc42b-e969-4f86-95f0-fb38d7525c0b 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E06_1347418.tangent.copynumber.data.txt'.
TCGA-A6-3810-10A-01D-A274-01 d94172d0-8424-430c-bc0f-e8cc2c2f942f 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A04_1347372.birdseed.data.txt'.
TCGA-A6-3810-10A-01D-A274-01 d94172d0-8424-430c-bc0f-e8cc2c2f942f 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A04_1347372.birdseed.data.txt'.
TCGA-A6-5656-01B-02D-A274-01 6a200b55-070e-4c0e-a79f-e87af7b2fcf2 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D05_1347368.tangent.copynumber.data.txt'.
TCGA-A6-5656-01B-02D-A274-01 6a200b55-070e-4c0e-a79f-e87af7b2fcf2 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D05_1347368.tangent.copynumber.data.txt'.
TCGA-A6-5656-10A-01D-A274-01 2f7ee485-97c1-44ee-93e8-0cbd5632a0a2 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C04_1347336.birdseed.data.txt'.
TCGA-A6-5656-10A-01D-A274-01 2f7ee485-97c1-44ee-93e8-0cbd5632a0a2 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C04_1347336.birdseed.data.txt'.
TCGA-A6-5659-01B-04D-A274-01 96229008-8c03-499c-896f-da967b353753 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A07_1347448.tangent.copynumber.data.txt'.
TCGA-A6-5659-01B-04D-A274-01 96229008-8c03-499c-896f-da967b353753 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A07_1347448.tangent.copynumber.data.txt'.
TCGA-A6-5661-01B-05D-2297-01 81a4f8c8-f77b-4ae6-b720-e8e925f84405 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-5661-01B-05D-2297-01 81a4f8c8-f77b-4ae6-b720-e8e925f84405 07/27/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A02_1148002.tangent.copynumber.data.txt'.
TCGA-A6-5661-01B-05D-2297-01 81a4f8c8-f77b-4ae6-b720-e8e925f84405 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A02_1148002.tangent.copynumber.data.txt'.
TCGA-A6-5661-01B-05D-2297-01 81a4f8c8-f77b-4ae6-b720-e8e925f84405 09/11/2012 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2004.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A02_1148002.tangent.copynumber.data.txt'.
TCGA-A6-5661-01B-05D-2297-01 81a4f8c8-f77b-4ae6-b720-e8e925f84405 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A02_1148002.tangent.copynumber.data.txt'.
TCGA-A6-5661-01B-05D-2298-08 6dd5dfe9-9743-43d1-9aac-5456f0657d7f 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-5661-01B-05D-2299-05 b90ec3c5-fb49-4b46-a24b-d7488c416805 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-5661-01B-05R-2302-07 bc8680ed-09c6-4406-90ca-af7085fefd53 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-5661-01B-05R-2303-13 89a38f1b-31b0-42c4-bf74-62d6d25d2000 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-5665-01B-03D-2297-01 24eaa47c-2d95-433c-90e0-17686236a9b1 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-5665-01B-03D-2297-01 24eaa47c-2d95-433c-90e0-17686236a9b1 07/27/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A08_1147852.tangent.copynumber.data.txt'.
TCGA-A6-5665-01B-03D-2297-01 24eaa47c-2d95-433c-90e0-17686236a9b1 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A08_1147852.tangent.copynumber.data.txt'.
TCGA-A6-5665-01B-03D-2297-01 24eaa47c-2d95-433c-90e0-17686236a9b1 09/11/2012 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2004.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A08_1147852.tangent.copynumber.data.txt'.
TCGA-A6-5665-01B-03D-2297-01 24eaa47c-2d95-433c-90e0-17686236a9b1 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A08_1147852.tangent.copynumber.data.txt'.
TCGA-A6-5665-01B-03D-2298-08 1644b065-a3bb-4c56-9b52-24fcf3256b96 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-5665-01B-03D-2299-05 249222f0-9616-4133-9af5-5ab1c1c45275 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-5665-01B-03R-2302-07 e110017a-7907-42a5-a01d-c874dad24d0f 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-5665-01B-03R-2303-13 cbb2ddcd-6578-47ec-9799-da98176cf4e7 06/26/2012 COAD Item is noncanonical FFPE COAD Pilot 1
TCGA-A6-6650-01B-02D-A274-01 e1deceb3-47cc-46c5-9540-77ab6cedc597 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D11_1347352.tangent.copynumber.data.txt'.
TCGA-A6-6650-01B-02D-A274-01 e1deceb3-47cc-46c5-9540-77ab6cedc597 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D11_1347352.tangent.copynumber.data.txt'.
TCGA-A6-6650-10A-01D-A274-01 d2db47d7-e9b2-4691-800f-e4e91cb720d0 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D12_1347478.birdseed.data.txt'.
TCGA-A6-6650-10A-01D-A274-01 d2db47d7-e9b2-4691-800f-e4e91cb720d0 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D12_1347478.birdseed.data.txt'.
TCGA-A6-6780-01B-04D-A274-01 2d7c1a55-660a-4075-ad6e-3a3d4da1838d 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D07_1347432.tangent.copynumber.data.txt'.
TCGA-A6-6780-01B-04D-A274-01 2d7c1a55-660a-4075-ad6e-3a3d4da1838d 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D07_1347432.tangent.copynumber.data.txt'.
TCGA-A6-6780-10A-01D-A274-01 cd904ecf-e7b6-4650-bfc0-d62b0fe4c8f3 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D03_1347380.birdseed.data.txt'.
TCGA-A6-6780-10A-01D-A274-01 cd904ecf-e7b6-4650-bfc0-d62b0fe4c8f3 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D03_1347380.birdseed.data.txt'.
TCGA-A6-6781-01B-06D-A274-01 a86be412-93b1-4891-9eae-b2efe14f659b 09/06/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B07_1347440.tangent.copynumber.data.txt'.
TCGA-A6-6781-01B-06D-A274-01 a86be412-93b1-4891-9eae-b2efe14f659b 10/10/2013 COAD Item flagged DNU SDRF in broad.mit.edu_COAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B07_1347440.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 01/09/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 02/27/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 05/17/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 07/28/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 08/08/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 09/12/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 09/20/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 09/28/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A0DC-01B-04D-A22Q-01 e781547e-415c-4656-b656-c1df8cc22fc3 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A10_1147968.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 01/09/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 02/27/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 05/17/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 07/28/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 08/08/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 09/12/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 09/20/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 09/28/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A13G-01B-04D-A22Q-01 defdce72-fa52-4bbc-8f34-b3e9e1c3f12d 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A07_1147964.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26E-01B-06D-A275-01 2b8ab526-01bc-4c93-b019-273a04d94c8c 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C12_1347490.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 01/09/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 02/27/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 05/17/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 07/28/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 08/08/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 09/12/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 09/20/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 09/28/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26F-01B-04D-A22Q-01 2d32a4ba-d5da-4f17-915c-ac1c1bceac01 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A09_1147944.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-A7-A26J-01B-02D-A275-01 f373fd2d-5d41-4ade-ba39-f290ef8482ce 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C06_1347318.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 01/09/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 02/27/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 05/17/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 07/28/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 08/08/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 09/12/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 09/20/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 09/28/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A2QH-01B-04D-A22Q-01 86c22622-a7fb-4c73-8d6a-40be9a307dbe 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_G04_1147836.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 01/09/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 01/30/2014 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 02/27/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 05/17/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 07/28/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 08/08/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 09/06/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 09/12/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 09/20/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 09/28/2012 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 10/10/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 10/22/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-AC-A3OD-01B-06D-A22Q-01 339d0eca-df55-41e8-8415-9017c03018df 12/18/2013 BRCA Item flagged DNU SDRF in broad.mit.edu_BRCA.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_E04_1147978.tangent.copynumber.data.txt'.
TCGA-B2-3924-01B-03D-A274-01 9070ab00-7976-4b1f-a278-a2f9c67aa6df 09/06/2013 KIRC Item flagged DNU SDRF in broad.mit.edu_KIRC.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A03_1347388.tangent.copynumber.data.txt'.
TCGA-B2-5633-01B-04D-A274-01 35aa48cf-b684-48a9-80b6-83a0a0b75a62 09/06/2013 KIRC Item flagged DNU SDRF in broad.mit.edu_KIRC.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D10_1347406.tangent.copynumber.data.txt'.
TCGA-B2-5633-10A-01D-A274-01 1d558008-2211-4d66-ba72-22c3576300b4 09/06/2013 KIRC Item flagged DNU SDRF in broad.mit.edu_KIRC.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D08_1347412.birdseed.data.txt'.
TCGA-B2-5635-01B-04D-A274-01 99275492-91fa-4f9e-9bba-70cb57fff80e 09/06/2013 KIRC Item flagged DNU SDRF in broad.mit.edu_KIRC.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E02_1347458.tangent.copynumber.data.txt'.
TCGA-B2-5635-10A-01D-A274-01 a5802cbe-d179-4f36-bd27-d35e469d6735 09/06/2013 KIRC Item flagged DNU SDRF in broad.mit.edu_KIRC.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E04_1347390.birdseed.data.txt'.
TCGA-BK-A0CA-01B-02D-A275-01 e488e03b-31e3-4e7f-87a4-6e30612add04 02/05/2014 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B11_1347494.tangent.copynumber.data.txt'.
TCGA-BK-A0CA-01B-02D-A275-01 e488e03b-31e3-4e7f-87a4-6e30612add04 09/06/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B11_1347494.tangent.copynumber.data.txt'.
TCGA-BK-A0CA-01B-02D-A275-01 e488e03b-31e3-4e7f-87a4-6e30612add04 10/10/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B11_1347494.tangent.copynumber.data.txt'.
TCGA-BK-A0CA-01B-02D-A275-01 e488e03b-31e3-4e7f-87a4-6e30612add04 10/22/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B11_1347494.tangent.copynumber.data.txt'.
TCGA-BK-A0CA-01B-02D-A275-01 e488e03b-31e3-4e7f-87a4-6e30612add04 12/17/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B11_1347494.tangent.copynumber.data.txt'.
TCGA-BK-A0CC-01B-04D-A275-01 7a52efc5-0d32-4147-a2a0-67576bb190b7 02/05/2014 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C08_1347480.tangent.copynumber.data.txt'.
TCGA-BK-A0CC-01B-04D-A275-01 7a52efc5-0d32-4147-a2a0-67576bb190b7 09/06/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C08_1347480.tangent.copynumber.data.txt'.
TCGA-BK-A0CC-01B-04D-A275-01 7a52efc5-0d32-4147-a2a0-67576bb190b7 10/10/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C08_1347480.tangent.copynumber.data.txt'.
TCGA-BK-A0CC-01B-04D-A275-01 7a52efc5-0d32-4147-a2a0-67576bb190b7 10/22/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C08_1347480.tangent.copynumber.data.txt'.
TCGA-BK-A0CC-01B-04D-A275-01 7a52efc5-0d32-4147-a2a0-67576bb190b7 12/17/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C08_1347480.tangent.copynumber.data.txt'.
TCGA-BK-A0CC-10A-02D-A275-01 0b06d0b5-b390-4eb0-be4d-114cc824d911 02/05/2014 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C10_1347308.birdseed.data.txt'.
TCGA-BK-A0CC-10A-02D-A275-01 0b06d0b5-b390-4eb0-be4d-114cc824d911 09/06/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C10_1347308.birdseed.data.txt'.
TCGA-BK-A0CC-10A-02D-A275-01 0b06d0b5-b390-4eb0-be4d-114cc824d911 10/10/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C10_1347308.birdseed.data.txt'.
TCGA-BK-A0CC-10A-02D-A275-01 0b06d0b5-b390-4eb0-be4d-114cc824d911 10/22/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C10_1347308.birdseed.data.txt'.
TCGA-BK-A0CC-10A-02D-A275-01 0b06d0b5-b390-4eb0-be4d-114cc824d911 12/17/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C10_1347308.birdseed.data.txt'.
TCGA-BK-A139-01C-08D-A275-01 e844a3bb-b90c-4109-89cd-44fb50d6d175 02/05/2014 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C02_1347456.tangent.copynumber.data.txt'.
TCGA-BK-A139-01C-08D-A275-01 e844a3bb-b90c-4109-89cd-44fb50d6d175 09/06/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C02_1347456.tangent.copynumber.data.txt'.
TCGA-BK-A139-01C-08D-A275-01 e844a3bb-b90c-4109-89cd-44fb50d6d175 10/10/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C02_1347456.tangent.copynumber.data.txt'.
TCGA-BK-A139-01C-08D-A275-01 e844a3bb-b90c-4109-89cd-44fb50d6d175 10/22/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C02_1347456.tangent.copynumber.data.txt'.
TCGA-BK-A139-01C-08D-A275-01 e844a3bb-b90c-4109-89cd-44fb50d6d175 12/17/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_C02_1347456.tangent.copynumber.data.txt'.
TCGA-BK-A26L-01C-04D-A275-01 0a3da6e7-e5dd-4016-8637-987111d86c7c 02/05/2014 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B08_1347348.tangent.copynumber.data.txt'.
TCGA-BK-A26L-01C-04D-A275-01 0a3da6e7-e5dd-4016-8637-987111d86c7c 09/06/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B08_1347348.tangent.copynumber.data.txt'.
TCGA-BK-A26L-01C-04D-A275-01 0a3da6e7-e5dd-4016-8637-987111d86c7c 10/10/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B08_1347348.tangent.copynumber.data.txt'.
TCGA-BK-A26L-01C-04D-A275-01 0a3da6e7-e5dd-4016-8637-987111d86c7c 10/22/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B08_1347348.tangent.copynumber.data.txt'.
TCGA-BK-A26L-01C-04D-A275-01 0a3da6e7-e5dd-4016-8637-987111d86c7c 12/17/2013 UCEC Item flagged DNU SDRF in broad.mit.edu_UCEC.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B08_1347348.tangent.copynumber.data.txt'.