Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
C1orf187	374946	broad.mit.edu	37	1	11766452	11766452	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr1:11766452G>A	uc001asr.1	+	2	277	c.137G>A	c.(136-138)GGC>GAC	p.G46D		NM_198545	NP_940947	Q8NBI3	DRAXI_HUMAN	chromosome 1 open reading frame 187 precursor	46					axon guidance|commissural neuron differentiation in spinal cord|dorsal spinal cord development|forebrain development|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular region					0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.48e-06)|COAD - Colon adenocarcinoma(227;0.000283)|BRCA - Breast invasive adenocarcinoma(304;0.000316)|Kidney(185;0.000841)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|STAD - Stomach adenocarcinoma(313;0.00754)|READ - Rectum adenocarcinoma(331;0.0651)		GACCTCCCAGGCCCAGCGCTG	0.716000													9	27					0	0	0	0
EFHD2	79180	broad.mit.edu	37	1	15752368	15752368	+	Missense_Mutation	SNP	T	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr1:15752368T>G	uc001awh.2	+	2	387	c.310T>G	c.(310-312)TAT>GAT	p.Y104D		NM_024329	NP_077305	Q96C19	EFHD2_HUMAN	EF-hand domain family, member D2	104	EF-hand 1.					membrane raft					0		Renal(390;0.00145)|Breast(348;0.00173)|Colorectal(325;0.00215)|all_lung(284;0.00366)|Lung NSC(340;0.00395)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)|Hepatocellular(190;0.152)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.59e-07)|COAD - Colon adenocarcinoma(227;3.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000119)|KIRC - Kidney renal clear cell carcinoma(229;0.00251)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		CATCTGCAGGTATGATGCCGG	0.557000													10	96					0	0	0	0
EIF2C4	192670	broad.mit.edu	37	1	36316594	36316594	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr1:36316594A>G	uc001bzj.1	+	17	2607	c.2417A>G	c.(2416-2418)TAT>TGT	p.Y806C		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	806	Piwi.				mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GCCCCTGCATATTATGCCCGG	0.453000													4	33					0	0	0	0
COL8A2	1296	broad.mit.edu	37	1	36564363	36564363	+	Missense_Mutation	SNP	G	A	A	rs372280		TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr1:36564363G>A	uc001bzv.1	-	2	926	c.919C>T	c.(919-921)CCT>TCT	p.P307S	COL8A2_uc001bzw.1_Missense_Mutation_p.P242S	NM_005202	NP_005193	P25067	CO8A2_HUMAN	collagen, type VIII, alpha 2 precursor	307	Triple-helical region.				angiogenesis|cell-cell adhesion|extracellular matrix organization	basement membrane|collagen	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				ATCAGCCCAGGGGGGCCCCGG	0.706000													25	32					0	0	0	0
GLMN	11146	broad.mit.edu	37	1	92752126	92752126	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr1:92752126G>T	uc001dor.2	-	7	771	c.656C>A	c.(655-657)CCT>CAT	p.P219H	GLMN_uc009wdg.2_RNA|GLMN_uc001dos.2_Missense_Mutation_p.P219H	NM_053274	NP_444504	Q92990	GLMN_HUMAN	glomulin	219				P->A: Loss of interaction with FKBP12 and FKBP59.	muscle cell differentiation|negative regulation of T cell proliferation|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of phosphorylation|regulation of gene expression, epigenetic|vasculogenesis	intracellular	hepatocyte growth factor receptor binding			skin(1)	1		all_lung(203;0.00827)|Lung NSC(277;0.0295)		all cancers(265;0.00702)|GBM - Glioblastoma multiforme(16;0.0381)|Epithelial(280;0.0989)		TGTCAGCAAAGGGCATTTCAA	0.333000									Multiple_Glomus_Tumors_(of_the_Skin)_Familial				4	86					0.00024832	0.00026384	1	0
ITGA10	8515	broad.mit.edu	37	1	145535818	145535818	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr1:145535818G>A	uc001eoa.2	+	16	2082	c.2006G>A	c.(2005-2007)CGA>CAA	p.R669Q	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Missense_Mutation_p.R538Q|ITGA10_uc009wiw.2_Missense_Mutation_p.R526Q|ITGA10_uc010oyw.1_Missense_Mutation_p.R614Q	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	669	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TGTAGGCGGCGAGGCCAAGAG	0.577000													25	139					0	0	0	0
HRNR	388697	broad.mit.edu	37	1	152193084	152193084	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr1:152193084C>G	uc001ezt.1	-	3	1097	c.1021G>C	c.(1021-1023)GGC>CGC	p.G341R		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	341	3.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGGCCTGAGCCAGACTCATAA	0.577000													11	124					0	0	0	0
PEAR1	375033	broad.mit.edu	37	1	156876577	156876577	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr1:156876577T>A	uc001fqj.1	+	6	665	c.549T>A	c.(547-549)TAT>TAA	p.Y183*	PEAR1_uc009wsl.1_Intron|PEAR1_uc001fqk.1_5'UTR	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	183						integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CTGGCTACTATGGCCCTGCCT	0.632000													7	76					0	0	0	0
KIAA1383	54627	broad.mit.edu	37	1	232942446	232942446	+	Silent	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr1:232942446T>C	uc001hvh.2	+	1	1809	c.1677T>C	c.(1675-1677)GCT>GCC	p.A559A		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	417										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				CAAGTCCTGCTCATATACATC	0.413000													3	77					0	0	0	0
CUBN	8029	broad.mit.edu	37	10	17061945	17061945	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr10:17061945C>T	uc001ioo.2	-	28	4107	c.4055G>A	c.(4054-4056)GGA>GAA	p.G1352E		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1352	CUB 8.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CAGGTCTACTCCACAGTAGCG	0.493000													14	59					0	0	0	0
WAPAL	23063	broad.mit.edu	37	10	88227232	88227232	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr10:88227232T>C	uc001kdo.2	-	9	2616	c.2174A>G	c.(2173-2175)TAT>TGT	p.Y725C	WAPAL_uc009xsv.2_Missense_Mutation_p.Y39C|WAPAL_uc001kdn.2_Missense_Mutation_p.Y762C|WAPAL_uc009xsw.2_Missense_Mutation_p.Y719C	NM_015045	NP_055860	Q7Z5K2	WAPL_HUMAN	wings apart-like homolog	725	WAPL.				cell division|interspecies interaction between organisms|mitosis|negative regulation of chromatin binding|negative regulation of DNA replication|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding			ovary(1)	1						ACTCAGTATATACATGAGGGC	0.388000													14	49					0	0	0	0
CEP55	55165	broad.mit.edu	37	10	95287808	95287808	+	Silent	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr10:95287808T>C	uc009xug.2	+	9	1475	c.1293T>C	c.(1291-1293)GCT>GCC	p.A431A	CEP55_uc001kiq.3_Silent_p.A431A	NM_001127182	NP_001120654	Q53EZ4	CEP55_HUMAN	centrosomal protein 55kDa	431	Required for localization to the interphase centrosome and to the midbody during cytokinesis.				cell division|mitosis	centriole|cleavage furrow|midbody					0		Colorectal(252;0.207)				GTCCCACTGCTGCACTCAATG	0.463000													23	64					0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1274140	1274140	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr11:1274140C>G	uc009ycr.1	+	54	16239	c.16113C>G	c.(16111-16113)TGC>TGG	p.C5371W	MUC5B_uc001ltb.2_Missense_Mutation_p.C5052W	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	5049					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACGTCACCTGCGTGAACAAGC	0.617000													6	33					0	0	0	0
OR10A3	26496	broad.mit.edu	37	11	7960501	7960501	+	Silent	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr11:7960501A>G	uc010rbi.1	-	1	567	c.567T>C	c.(565-567)TGT>TGC	p.C189C		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	189	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGGTGTCTGCACACACAAGCT	0.418000													5	95					0	0	0	0
PDE3B	5140	broad.mit.edu	37	11	14853185	14853185	+	Splice_Site	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr11:14853185G>C	uc001mln.2	+	9	2310	c.1957_splice	c.e9-1	p.I653_splice	PDE3B_uc010rcr.1_Splice_Site_p.I602_splice	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B						cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						TGTATGTACAGATTGAACAGG	0.279000													33	62					0	0	0	0
LOC440040	440040	broad.mit.edu	37	11	49597984	49597984	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr11:49597984C>G	uc010rhy.1	+	2	575	c.97C>G	c.(97-99)CAG>GAG	p.Q33E	LOC440040_uc009ymb.2_Missense_Mutation_p.Q33E	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						AGTCCGTGAACAGTATGGCAT	0.502000													9	25					0	0	0	0
DDB1	1642	broad.mit.edu	37	11	61097015	61097015	+	Silent	SNP	G	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr11:61097015G>T	uc001nrc.3	-	4	595	c.369C>A	c.(367-369)ATC>ATA	p.I123I	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Silent_p.I123I|DDB1_uc010rlg.1_5'Flank|DDB1_uc001nrd.2_Silent_p.I123I|DDB1_uc009ynl.1_Intron	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	123	Interaction with CDT1.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						CAGGGTCAATGATGCCAATAA	0.498000								NER					9	14					0.000274275	0.000287425	1	0
SCYL1	57410	broad.mit.edu	37	11	65303563	65303563	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr11:65303563C>T	uc001oea.1	+	11	1603	c.1526C>T	c.(1525-1527)CCT>CTT	p.P509L	SCYL1_uc009yqk.2_Missense_Mutation_p.P509L|SCYL1_uc001oeb.1_Missense_Mutation_p.P509L|SCYL1_uc001oec.1_Missense_Mutation_p.P509L|SCYL1_uc001oed.1_Missense_Mutation_p.P366L|SCYL1_uc001oee.1_Missense_Mutation_p.P153L	NM_020680	NP_065731	Q96KG9	NTKL_HUMAN	SCY1-like 1 isoform A	509	HEAT 3.				regulation of transcription, DNA-dependent|retrograde vesicle-mediated transport, Golgi to ER|transcription, DNA-dependent	cis-Golgi network|COPI vesicle coat|ER-Golgi intermediate compartment|microtubule organizing center|nucleus	ATP binding|DNA binding|protein tyrosine kinase activity			skin(1)	1						AAGATCCTGCCTGTGCTCTGC	0.617000													39	71					0	0	0	0
TCIRG1	10312	broad.mit.edu	37	11	67811734	67811734	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr11:67811734C>T	uc001one.2	+	9	1051	c.943C>T	c.(943-945)CAC>TAC	p.H315Y	TCIRG1_uc001ong.2_Missense_Mutation_p.H99Y|TCIRG1_uc001onh.2_Missense_Mutation_p.H17Y|TCIRG1_uc001oni.2_5'UTR	NM_006019	NP_006010	Q13488	VPP3_HUMAN	T-cell, immune regulator 1 isoform a	315	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular defense response|cellular iron ion homeostasis|insulin receptor signaling pathway|positive regulation of cell proliferation|transferrin transport	apical plasma membrane|endosome membrane|integral to plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity			ovary(1)	1						GAGCACCACGCACAAGTGCCT	0.687000													4	31					0	0	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106681089	106681089	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr11:106681089G>C	uc001pjg.1	-	5	1712	c.1322C>G	c.(1321-1323)TCA>TGA	p.S441*	GUCY1A2_uc010rvo.1_Nonsense_Mutation_p.S462*|GUCY1A2_uc009yxn.1_Nonsense_Mutation_p.S441*	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	441					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		AGGGATGTCTGAGAGATGTAG	0.453000													102	811					0	0	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106681158	106681158	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr11:106681158G>T	uc001pjg.1	-	5	1643	c.1253C>A	c.(1252-1254)TCC>TAC	p.S418Y	GUCY1A2_uc010rvo.1_Missense_Mutation_p.S439Y|GUCY1A2_uc009yxn.1_Missense_Mutation_p.S418Y	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	418					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		AAATAAAATGGAATTTGATTC	0.423000													89	858					7.49063e-41	8.68232e-41	1	0
FXYD2	486	broad.mit.edu	37	11	117695379	117695379	+	Silent	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr11:117695379C>T	uc001prj.2	-	1	81	c.15G>A	c.(13-15)TCG>TCA	p.S5S	FXYD2_uc001prl.2_Silent_p.S5S|FXYD2_uc001prk.1_Intron	NM_001680	NP_001671	P54710	ATNG_HUMAN	FXYD domain-containing ion transport regulator 2	5						sodium:potassium-exchanging ATPase complex	ion channel activity|sodium:potassium-exchanging ATPase activity				0	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|Breast(348;0.111)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;2.83e-05)|Epithelial(105;0.00114)	Cyclothiazide(DB00606)	CACCGTCCATCGACAACCCAG	0.612000													10	24					0	0	0	0
VWF	7450	broad.mit.edu	37	12	6094236	6094236	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr12:6094236G>C	uc001qnn.1	-	40	7201	c.6951C>G	c.(6949-6951)GAC>GAG	p.D2317E	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2317	VWFC 1.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GGCAGCACTGGTCTGCATTCT	0.597000													24	101					0	0	0	0
MANSC1	54682	broad.mit.edu	37	12	12496065	12496065	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr12:12496065C>G	uc001rai.1	-	2	442	c.184G>C	c.(184-186)GAC>CAC	p.D62H	MANSC1_uc001raj.1_Missense_Mutation_p.D28H|MANSC1_uc009zht.1_Intron	NM_018050	NP_060520	Q9H8J5	MANS1_HUMAN	MANSC domain containing 1 precursor	62	MANSC.|Extracellular (Potential).					integral to membrane					0		Prostate(47;0.0865)		BRCA - Breast invasive adenocarcinoma(232;0.185)		TTAATGCAGTCTTCTTGAGTT	0.403000													4	171					0	0	0	0
PTPRO	5800	broad.mit.edu	37	12	15668508	15668508	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr12:15668508G>A	uc001rcv.1	+	8	1715	c.1541G>A	c.(1540-1542)GGC>GAC	p.G514D	PTPRO_uc001rcw.1_Missense_Mutation_p.G514D|PTPRO_uc001rcu.1_Missense_Mutation_p.G514D	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	514	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				CTAAGGAAAGGCCCTTTGATT	0.413000													31	104					0	0	0	0
SMUG1	23583	broad.mit.edu	37	12	54576179	54576179	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr12:54576179G>A	uc001sff.1	-	4	643	c.514C>T	c.(514-516)CCC>TCC	p.P172S	SMUG1_uc001sfa.1_5'Flank|SMUG1_uc001sfe.1_3'UTR|SMUG1_uc001sfg.1_Missense_Mutation_p.P172S|SMUG1_uc009znf.1_Missense_Mutation_p.P172S|SMUG1_uc001sfb.3_Intron|SMUG1_uc001sfc.3_Intron|SMUG1_uc001sfd.3_Intron	NM_014311	NP_055126	Q53HV7	SMUG1_HUMAN	single-strand-selective monofunctional	172				Missing (in Ref. 3; BAC03670).	depyrimidination	nucleolus|nucleoplasm	DNA binding|protein binding|single-strand selective uracil DNA N-glycosylase activity				0						CGCCCGCTGGGAGCCAGGAAA	0.577000								BER_DNA_glycosylases					6	122					0	0	0	0
KERA	11081	broad.mit.edu	37	12	91449227	91449227	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr12:91449227G>T	uc001tbl.2	-	2	1451	c.832C>A	c.(832-834)CCC>ACC	p.P278T		NM_007035	NP_008966	O60938	KERA_HUMAN	keratocan precursor	278	LRR 9.				response to stimulus|visual perception	proteinaceous extracellular matrix				skin(1)	1						CTGATTCGGGGAACCTTTGTG	0.408000													33	104					1.04352e-10	1.16539e-10	1	0
ZMYM2	7750	broad.mit.edu	37	13	20641120	20641120	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr13:20641120C>G	uc001umr.2	+	21	3560	c.3262C>G	c.(3262-3264)CTT>GTT	p.L1088V	ZMYM2_uc001ums.2_Missense_Mutation_p.L1088V|ZMYM2_uc001umt.2_Missense_Mutation_p.L1088V|ZMYM2_uc001umv.2_Missense_Mutation_p.L468V|ZMYM2_uc001umw.2_Missense_Mutation_p.L541V	NM_003453	NP_003444	Q9UBW7	ZMYM2_HUMAN	zinc finger protein 198	1088					regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	ubiquitin conjugating enzyme binding|zinc ion binding			lung(3)|ovary(2)|prostate(1)	6		all_cancers(29;8.65e-21)|all_epithelial(30;1.04e-18)|all_lung(29;6.75e-18)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;0.000148)|Epithelial(112;0.000249)|OV - Ovarian serous cystadenocarcinoma(117;0.00816)|Lung(94;0.0173)|LUSC - Lung squamous cell carcinoma(192;0.0856)		AACTAGGCAACTTGATGAAGA	0.338000													5	66					0	0	0	0
PCDH9	5101	broad.mit.edu	37	13	67800747	67800747	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr13:67800747A>G	uc001vik.2	-	2	2518	c.1826T>C	c.(1825-1827)CTT>CCT	p.L609P	PCDH9_uc001vil.2_Missense_Mutation_p.L609P|PCDH9_uc010thl.1_Missense_Mutation_p.L609P|PCDH9_uc001vin.3_Missense_Mutation_p.L609P	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	609	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		TAGAATGGAAAGAGTCACAGC	0.383000													13	147					0	0	0	0
ATP11A	23250	broad.mit.edu	37	13	113460594	113460594	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr13:113460594C>T	uc001vsi.3	+	4	408	c.320C>T	c.(319-321)ACG>ATG	p.T107M	ATP11A_uc001vsj.3_Missense_Mutation_p.T107M|ATP11A_uc001vsm.1_Translation_Start_Site	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	107	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				ATTACTGTGACGGCTATCAAA	0.398000													32	138					0	0	0	0
FAM71D	161142	broad.mit.edu	37	14	67671509	67671509	+	Silent	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr14:67671509G>A	uc001xja.1	+	5	869	c.615G>A	c.(613-615)GTG>GTA	p.V205V	FAM71D_uc010aqn.1_RNA	NM_173526	NP_775797	Q8N9W8	FA71D_HUMAN	hypothetical protein LOC161142	205										ovary(1)	1		all_hematologic(31;0.0116)		all cancers(60;0.00107)|BRCA - Breast invasive adenocarcinoma(234;0.00993)|OV - Ovarian serous cystadenocarcinoma(108;0.012)		CCATGGATGTGACGGATGTCA	0.493000													34	145					0	0	0	0
PCNX	22990	broad.mit.edu	37	14	71444274	71444274	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr14:71444274C>G	uc001xmo.2	+	6	1666	c.1220C>G	c.(1219-1221)TCA>TGA	p.S407*	PCNX_uc001xmn.3_Nonsense_Mutation_p.S407*|PCNX_uc010are.1_Nonsense_Mutation_p.S407*	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	407						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		CAGACCAGCTCAACTCACATA	0.512000													4	135					0	0	0	0
CLMN	79789	broad.mit.edu	37	14	95670064	95670064	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr14:95670064T>A	uc001yef.2	-	9	1738	c.1622A>T	c.(1621-1623)AAG>ATG	p.K541M		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	541						integral to membrane	actin binding				0				Epithelial(152;0.193)		CAGGTTAACCTTGATCTGGAA	0.433000													12	156					0	0	0	0
HSP90AA1	3320	broad.mit.edu	37	14	102548742	102548742	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr14:102548742T>C	uc001yku.3	-	10	1985	c.1795A>G	c.(1795-1797)ATT>GTT	p.I599V	HSP90AA1_uc001ykv.3_Missense_Mutation_p.I721V	NM_005348	NP_005339	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 2	599					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	CTTGTGACAATACAGCATGGA	0.408000													14	89					0	0	0	0
GPR176	11245	broad.mit.edu	37	15	40093986	40093986	+	Missense_Mutation	SNP	C	T	T	rs139843045	byFrequency	TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr15:40093986C>T	uc001zkj.1	-	3	1761	c.895G>A	c.(895-897)GTC>ATC	p.V299I	GPR176_uc010uck.1_Missense_Mutation_p.V239I	NM_007223	NP_009154	Q14439	GP176_HUMAN	G protein-coupled receptor 176	299	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		all_cancers(109;4.05e-15)|all_epithelial(112;2.96e-13)|Lung NSC(122;8.53e-11)|all_lung(180;2.71e-09)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;4.4e-06)|BRCA - Breast invasive adenocarcinoma(123;0.123)		AGCAAGAAGACGGAAGTGTCA	0.532000											OREG0023053	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	56					0	0	0	0
C15orf33	196951	broad.mit.edu	37	15	49663515	49663515	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr15:49663515G>C	uc001zxl.2	-	12	1388	c.1094C>G	c.(1093-1095)TCA>TGA	p.S365*		NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	365										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		TGCTAGTCTTGATAATCTTGA	0.299000													6	210					0	0	0	0
HERC1	8925	broad.mit.edu	37	15	64067317	64067317	+	Nonsense_Mutation	SNP	A	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr15:64067317A>C	uc002amp.2	-	2	654	c.506T>G	c.(505-507)TTA>TGA	p.L169*	HERC1_uc010uil.1_Nonsense_Mutation_p.L169*|HERC1_uc010bgt.1_Nonsense_Mutation_p.L169*|HERC1_uc002amq.1_Nonsense_Mutation_p.L169*	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	169					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						AAGCGCAAATAATAAACTTAG	0.448000													8	378					0	0	0	0
PTPLAD1	51495	broad.mit.edu	37	15	65864618	65864618	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr15:65864618G>A	uc002apc.2	+	10	1074	c.926G>A	c.(925-927)CGA>CAA	p.R309Q	PTPLAD1_uc002apb.1_RNA|PTPLAD1_uc010uiw.1_Missense_Mutation_p.R254Q	NM_016395	NP_057479	Q9P035	HACD3_HUMAN	protein tyrosine phosphatase-like A domain	309	Lumenal (Potential).				activation of JUN kinase activity|fatty acid biosynthetic process|I-kappaB kinase/NF-kappaB cascade|Rac protein signal transduction	endoplasmic reticulum membrane|integral to membrane	GTPase activator activity|lyase activity|protein binding				0						GAGACCGGACGATTCAGTTTC	0.318000													13	137					0	0	0	0
A2BP1	54715	broad.mit.edu	37	16	7568364	7568364	+	Silent	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr16:7568364C>T	uc002cys.2	+	5	1231	c.243C>T	c.(241-243)AGC>AGT	p.S81S	A2BP1_uc010buf.1_Silent_p.S81S|A2BP1_uc002cyr.1_Silent_p.S81S|A2BP1_uc002cyt.2_Silent_p.S81S|A2BP1_uc010uxz.1_Silent_p.S124S|A2BP1_uc010uya.1_Silent_p.S117S|A2BP1_uc002cyv.1_Silent_p.S81S|A2BP1_uc010uyb.1_Silent_p.S81S|A2BP1_uc002cyw.2_Silent_p.S101S|A2BP1_uc002cyy.2_Silent_p.S101S|A2BP1_uc002cyx.2_Silent_p.S101S|A2BP1_uc010uyc.1_Silent_p.S101S	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	81					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CGGACACGAGCGCTCAGACCG	0.657000													24	100					0	0	0	0
CDH11	1009	broad.mit.edu	37	16	65016076	65016076	+	Silent	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr16:65016076A>G	uc002eoi.2	-	8	1562	c.1128T>C	c.(1126-1128)GAT>GAC	p.D376D	CDH11_uc010cdn.2_Intron|CDH11_uc002eoj.2_Silent_p.D376D|CDH11_uc010vin.1_Silent_p.D250D|CDH11_uc002eok.1_RNA	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	376	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		GCTCATCAGCATCTTCTACTG	0.517000			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			12	129					0	0	0	0
FHOD1	29109	broad.mit.edu	37	16	67265094	67265094	+	Silent	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr16:67265094G>A	uc002esl.2	-	17	2776	c.2664C>T	c.(2662-2664)GCC>GCT	p.A888A	FHOD1_uc002esk.2_5'Flank|FHOD1_uc010ced.2_Silent_p.A695A	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	888	Potential.|FH2.				actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		TGCTAACCTTGGCACAGCGGG	0.602000													6	43					0	0	0	0
FTSJD1	55783	broad.mit.edu	37	16	71319616	71319616	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr16:71319616G>C	uc010cga.2	-	3	614	c.208C>G	c.(208-210)CTA>GTA	p.L70V	FTSJD1_uc002ezy.3_Missense_Mutation_p.L70V|FTSJD1_uc002ezz.3_Missense_Mutation_p.L70V	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	70						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						ACTTCATTTAGGGAGTTCTTC	0.398000													29	129					0	0	0	0
DYNLRB2	83657	broad.mit.edu	37	16	80583408	80583408	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr16:80583408A>G	uc002ffo.2	+	5	227	c.107A>G	c.(106-108)AAC>AGC	p.N36S	DYNLRB2_uc002ffp.2_RNA|DYNLRB2_uc002ffq.2_RNA	NM_130897	NP_570967	Q8TF09	DLRB2_HUMAN	dynein, light chain, roadblock-type 2	36					microtubule-based movement|transport	cytoplasmic dynein complex|microtubule	microtubule motor activity				0						ACCTTGGACAACTCAACAACT	0.358000													12	36					0	0	0	0
BANP	54971	broad.mit.edu	37	16	88069000	88069000	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr16:88069000G>T	uc002fkr.2	+	10	1460	c.1236G>T	c.(1234-1236)GAG>GAT	p.E412D	BANP_uc002fkp.2_Missense_Mutation_p.E385D|BANP_uc002fkq.2_Missense_Mutation_p.E385D|BANP_uc010vow.1_Missense_Mutation_p.E420D|BANP_uc002fks.3_Missense_Mutation_p.E381D	NM_079837	NP_524576	Q8N9N5	BANP_HUMAN	BTG3 associated nuclear protein isoform b	413	Gln-rich.				cell cycle|chromatin modification|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0				BRCA - Breast invasive adenocarcinoma(80;0.00551)		AGGACAGCGAGGTGAGTCAGC	0.632000													8	16					0.000274275	0.000287425	1	0
TP53	7157	broad.mit.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	A	A	rs121913343		TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr17:7577121G>A	uc002gim.2	-	8	1011	c.817C>T	c.(817-819)CGT>TGT	p.R273C	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.R273C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R141C|TP53_uc010cng.1_Missense_Mutation_p.R141C|TP53_uc002gii.1_Missense_Mutation_p.R141C|TP53_uc010cnh.1_Missense_Mutation_p.R273C|TP53_uc010cni.1_Missense_Mutation_p.R273C|TP53_uc002gij.2_Missense_Mutation_p.R273C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	273	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> N (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> S (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> Y (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> P (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R273H(467)|p.R273C(396)|p.R273L(83)|p.R273P(24)|p.R273S(11)|p.R273G(9)|p.0?(7)|p.R273fs*72(3)|p.?(2)|p.R273fs*33(2)|p.F270fs*72(1)|p.R273_C275delRVC(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.R273R(1)|p.E258fs*71(1)|p.R273fs*71(1)|p.F270_D281del12(1)|p.E271_R273delEVR(1)|p.V272_K292del21(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCACAAACACGCACCTCAAAG	0.542000	R273C(SH10TC_STOMACH)|R273C(SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(8MGBA_CENTRAL_NERVOUS_SYSTEM)|R273C(SW1783_CENTRAL_NERVOUS_SYSTEM)|R273C(BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(SW1710_URINARY_TRACT)|R273C(RH30_SOFT_TISSUE)|R273C(PANC0213_PANCREAS)|R273C(SJRH30_SOFT_TISSUE)|R273C(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(RDES_BONE)|R273C(TT2609C02_THYROID)|R273C(MFE319_ENDOMETRIUM)|R273C(RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(EFO27_OVARY)|R273C(NCIH1048_LUNG)|R273C(KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			9	39					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7578449	7578449	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr17:7578449C>T	uc002gim.2	-	5	675	c.481G>A	c.(481-483)GCC>ACC	p.A161T	TP53_uc002gig.1_Missense_Mutation_p.A161T|TP53_uc002gih.2_Missense_Mutation_p.A161T|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.A29T|TP53_uc010cng.1_Missense_Mutation_p.A29T|TP53_uc002gii.1_Missense_Mutation_p.A29T|TP53_uc010cnh.1_Missense_Mutation_p.A161T|TP53_uc010cni.1_Missense_Mutation_p.A161T|TP53_uc002gij.2_Missense_Mutation_p.A161T|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.A68T|TP53_uc002gio.2_Missense_Mutation_p.A29T|TP53_uc010vug.1_Missense_Mutation_p.A122T	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	161	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		MA -> IP (in a sporadic cancer; somatic mutation).|MA -> IS (in sporadic cancers; somatic mutation).|MA -> IT (in a sporadic cancer; somatic mutation).|A -> G (in sporadic cancers; somatic mutation).|A -> V (in sporadic cancers; somatic mutation).|A -> D (in sporadic cancers; somatic mutation).|A -> P (in sporadic cancers; somatic mutation).|A -> S (in sporadic cancers; somatic mutation).|A -> F (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|A -> T (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.A161T(44)|p.A161D(8)|p.0?(7)|p.A161V(7)|p.A161A(5)|p.A161fs*9(3)|p.R156_I162delRVRAMAI(2)|p.M160fs*10(2)|p.V157_C176del20(1)|p.A161fs*19(1)|p.R156_A161delRVRAMA(1)|p.P151_V173del23(1)|p.R156fs*18(1)|p.A161fs*10(1)|p.R156_A161del(1)|p.V157fs*9(1)|p.A161fs*20(1)|p.M160_A161>IS(1)|p.A161fs*8(1)|p.A161G(1)|p.S149fs*72(1)|p.A161fs*7(1)|p.T155_A161delTRVRAMA(1)|p.R156fs*20(1)|p.A161S(1)|p.A161P(1)|p.V157_I162delVRAMAI(1)|p.A161F(1)|p.A159_Q167delAMAIYKQSQ(1)|p.R158fs*8(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TTGTAGATGGCCATGGCGCGG	0.632000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			17	62					0	0	0	0
PIK3R5	23533	broad.mit.edu	37	17	8808132	8808132	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr17:8808132T>C	uc002glt.2	-	5	441	c.374A>G	c.(373-375)GAG>GGG	p.E125G	PIK3R5_uc010vuz.1_Missense_Mutation_p.E125G|PIK3R5_uc002glu.3_5'UTR|PIK3R5_uc010coa.1_Missense_Mutation_p.E125G|PIK3R5_uc010cob.1_5'UTR	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	125					platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						GGTGAGCAGCTCCTGGCAGAT	0.582000													28	57					0	0	0	0
PIGW	284098	broad.mit.edu	37	17	34893088	34893088	+	Silent	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr17:34893088G>A	uc002hmy.1	+	2	181	c.138G>A	c.(136-138)TTG>TTA	p.L46L	MYO19_uc002hmw.2_5'Flank|MYO19_uc010cuu.2_5'Flank|MYO19_uc010wcy.1_5'Flank|MYO19_uc010wcz.1_5'Flank|MYO19_uc010wda.1_5'Flank|MYO19_uc002hmx.2_5'Flank|PIGW_uc002hmz.1_Silent_p.L46L	NM_178517	NP_848612	Q7Z7B1	PIGW_HUMAN	phosphatidylinositol glycan, class W	46					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	O-acyltransferase activity				0		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CACAGTACTTGTGTTCTTTTT	0.448000													8	246					0	0	0	0
ST6GALNAC2	10610	broad.mit.edu	37	17	74563605	74563605	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr17:74563605T>C	uc002jsg.3	-	8	1142	c.887A>G	c.(886-888)CAT>CGT	p.H296R		NM_006456	NP_006447	Q9UJ37	SIA7B_HUMAN	sialyltransferase 7B	296	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity				0						GTCTCCAAAATGTGTGTTAAT	0.443000													12	51					0	0	0	0
MYOM1	8736	broad.mit.edu	37	18	3067467	3067467	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr18:3067467G>C	uc002klp.2	-	38	5185	c.4851C>G	c.(4849-4851)GAC>GAG	p.D1617E	MYOM1_uc002klq.2_Missense_Mutation_p.D1521E	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1617	Ig-like C2-type 5.			D -> G (in Ref. 2; BAC86128).		striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GGTTGCAGTGGTCGTCTGAGG	0.587000													472	22					0	0	0	0
SPIRE1	56907	broad.mit.edu	37	18	12493083	12493083	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr18:12493083G>A	uc002kre.2	-	8	1224	c.1177C>T	c.(1177-1179)CGT>TGT	p.R393C	SPIRE1_uc002krc.2_RNA|SPIRE1_uc010wzw.1_Missense_Mutation_p.R273C|SPIRE1_uc010wzx.1_Missense_Mutation_p.R196C|SPIRE1_uc010wzy.1_Missense_Mutation_p.R393C	NM_001128626	NP_001122098	Q08AE8	SPIR1_HUMAN	spire homolog 1 isoform a	393						cytoskeleton|perinuclear region of cytoplasm	actin binding				0						AATCTGCTACGTCTAATCTCC	0.468000													18	37					0	0	0	0
SALL3	27164	broad.mit.edu	37	18	76754699	76754699	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr18:76754699A>G	uc002lmt.2	+	2	2708	c.2708A>G	c.(2707-2709)CAG>CGG	p.Q903R	SALL3_uc010dra.2_Missense_Mutation_p.Q510R	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	903					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		TCGTCCTCGCAGGCCCTGTCG	0.726000													4	10					0	0	0	0
PDE4C	5143	broad.mit.edu	37	19	18322001	18322001	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr19:18322001G>A	uc010xqc.1	-	15	2357	c.1877C>T	c.(1876-1878)ACG>ATG	p.T626M	PDE4C_uc002nik.3_Missense_Mutation_p.T626M|PDE4C_uc002nil.3_Missense_Mutation_p.T626M|PDE4C_uc002nif.3_Missense_Mutation_p.T395M|PDE4C_uc002nig.3_Missense_Mutation_p.T341M|PDE4C_uc002nih.3_Missense_Mutation_p.T396M|PDE4C_uc010ebk.2_Missense_Mutation_p.T520M|PDE4C_uc002nii.3_Missense_Mutation_p.T594M|PDE4C_uc010ebl.2_Missense_Mutation_p.T340M	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	626					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	GTCCTCCAGCGTGTCCAGCAG	0.597000													7	108					0	0	0	0
ZNF536	9745	broad.mit.edu	37	19	31040060	31040060	+	Silent	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr19:31040060C>T	uc002nsu.1	+	4	3672	c.3534C>T	c.(3532-3534)AAC>AAT	p.N1178N	ZNF536_uc010edd.1_Silent_p.N1178N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1178					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGGAGAACAACGATGAAGAGG	0.552000													15	44					0	0	0	0
SPRED3	399473	broad.mit.edu	37	19	38882740	38882740	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr19:38882740C>A	uc002oim.2	+	2	336	c.332C>A	c.(331-333)GCC>GAC	p.A111D	SPRED3_uc002oil.1_Missense_Mutation_p.A111D	NM_001042522	NP_001035987	Q2MJR0	SPRE3_HUMAN	sprouty-related, EVH1 domain containing 3	111	WH1.				multicellular organismal development					central_nervous_system(2)|lung(1)|skin(1)	4	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GCTGCGCTGGCCGCACTGGGT	0.607000													39	88					4.92203e-23	5.61993e-23	1	0
FPR1	2357	broad.mit.edu	37	19	52249293	52249293	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr19:52249293T>C	uc002pxq.2	-	2	1050	c.955A>G	c.(955-957)AGT>GGT	p.S319G		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	319	Cytoplasmic (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	CTCTCCAGACTGGCGGGAAGG	0.567000													8	98					0	0	0	0
MIR518A2	574491	broad.mit.edu	37	19	54242645	54242645	+	RNA	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr19:54242645G>A	hsa-mir-518a-2|MI0003173	+			c.59G>A			MIR517C_hsa-mir-517c|MI0003174_5'Flank																	0						AAGAGAAAGCGCTTCCCTTTG	0.468000													11	113					0	0	0	0
ZNF471	57573	broad.mit.edu	37	19	57027646	57027646	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr19:57027646C>G	uc002qnh.2	+	3	169	c.36C>G	c.(34-36)GAC>GAG	p.D12E		NM_020813	NP_065864	Q9BX82	ZN471_HUMAN	zinc finger protein 471	12					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0307)		CACTTCAGGACTTAGTGACAT	0.398000													27	90					0	0	0	0
ERCC3	2071	broad.mit.edu	37	2	128046972	128046972	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr2:128046972T>C	uc002toh.1	-	6	858	c.763A>G	c.(763-765)ATG>GTG	p.M255V	ERCC3_uc002toe.1_Missense_Mutation_p.M10V|ERCC3_uc002tof.1_Missense_Mutation_p.M191V|ERCC3_uc002tog.1_Missense_Mutation_p.M191V|ERCC3_uc010flx.1_Missense_Mutation_p.M10V|ERCC3_uc010yzh.1_RNA	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	255					cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		TCCTTGTCCATTTGCTCATAG	0.478000			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				16	60					0	0	0	0
NCKAP5	344148	broad.mit.edu	37	2	133538710	133538710	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr2:133538710A>G	uc002ttp.2	-	15	5338	c.4964T>C	c.(4963-4965)CTC>CCC	p.L1655P	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1655							protein binding				0						GCTGCCGATGAGACAGGAGCC	0.458000													7	41					0	0	0	0
ITGB6	3694	broad.mit.edu	37	2	161052924	161052924	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr2:161052924G>A	uc002ubh.2	-	3	165	c.149C>T	c.(148-150)ACT>ATT	p.T50I	ITGB6_uc010fow.1_RNA|ITGB6_uc010fou.2_Missense_Mutation_p.T50I|ITGB6_uc010zcq.1_Missense_Mutation_p.T8I|ITGB6_uc010fov.1_Missense_Mutation_p.T50I	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	50	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						AGATGGATGAGTAAAATTCTA	0.333000													55	142					0	0	0	0
ITGA6	3655	broad.mit.edu	37	2	173352098	173352098	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr2:173352098G>A	uc002uhp.1	+	15	2280	c.2077G>A	c.(2077-2079)GAT>AAT	p.D693N	ITGA6_uc010zdy.1_Missense_Mutation_p.D574N|ITGA6_uc002uho.1_Missense_Mutation_p.D693N|ITGA6_uc010fqm.1_Missense_Mutation_p.D339N	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	732	Extracellular (Potential).				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			AAAAGATGGCGATGACGCCCA	0.418000													28	62					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179582331	179582331	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr2:179582331G>T	uc010zfg.1	-	84	21762	c.21538C>A	c.(21538-21540)CAG>AAG	p.Q7180K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.Q3841K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8107							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGTGGCTCTGGTCAGTTTGT	0.423000													11	33					4.68919e-08	5.16148e-08	1	0
ZC3H15	55854	broad.mit.edu	37	2	187366146	187366146	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr2:187366146G>C	uc002upo.2	+	4	661	c.436G>C	c.(436-438)GAA>CAA	p.E146Q		NM_018471	NP_060941	Q8WU90	ZC3HF_HUMAN	erythropoietin 4 immediate early response	146						cytoplasm|nucleolus|plasma membrane	nucleic acid binding|zinc ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Epithelial(96;0.0922)|all cancers(119;0.233)			TGAAGAACTTGAAAAAGGTAA	0.299000													4	82					0	0	0	0
PAX3	5077	broad.mit.edu	37	2	223161786	223161786	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr2:223161786C>T	uc010fwo.2	-	2	598	c.232G>A	c.(232-234)GTG>ATG	p.V78M	PAX3_uc002vmt.1_Missense_Mutation_p.V78M|PAX3_uc002vmy.1_Missense_Mutation_p.V78M|PAX3_uc002vmv.1_Missense_Mutation_p.V78M|PAX3_uc002vmw.1_Missense_Mutation_p.V78M|PAX3_uc002vmx.1_Missense_Mutation_p.V78M|PAX3_uc002vmz.1_Missense_Mutation_p.V78M|PAX3_uc002vna.1_Missense_Mutation_p.V78M|CCDC140_uc002vnb.1_5'Flank	NM_181457	NP_852122	P23760	PAX3_HUMAN	paired box 3 isoform PAX3	78	Paired.		V -> M (in WS1).		apoptosis|organ morphogenesis|positive regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX3/FOXO1(749)|PAX3/NCOA1(8)|PAX3/NCOA2(4)	soft_tissue(761)|ovary(4)|skin(1)	766		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;1.85e-07)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCGTGGGACACGCGCAGCTGG	0.652000			T	FOXO1A|NCOA1	alveolar rhabdomyosarcoma		Waardenburg syndrome; craniofacial-deafness-hand syndrome						3	36					0	0	0	0
PLCB4	5332	broad.mit.edu	37	20	9388620	9388620	+	Silent	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr20:9388620T>C	uc002wnf.2	+	20	1804	c.1668T>C	c.(1666-1668)GGT>GGC	p.G556G	PLCB4_uc010gbw.1_Silent_p.G556G|PLCB4_uc010gbx.2_Silent_p.G568G|PLCB4_uc002wne.2_Silent_p.G556G|PLCB4_uc002wnh.2_Silent_p.G403G	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	556					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AATATGTAGGTGCTACCACTA	0.423000													44	130					0	0	0	0
FLRT3	23767	broad.mit.edu	37	20	14306474	14306474	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr20:14306474G>A	uc002wov.1	-	3	2146	c.1679C>T	c.(1678-1680)TCA>TTA	p.S560L	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Missense_Mutation_p.S560L	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	560	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		ACAGTTCCTTGAGAAGAGCGA	0.468000													57	117					0	0	0	0
PLK1S1	55857	broad.mit.edu	37	20	21143678	21143678	+	Silent	SNP	C	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr20:21143678C>A	uc002wsb.2	+	6	1363	c.1230C>A	c.(1228-1230)GCC>GCA	p.A410A	PLK1S1_uc010zsh.1_Silent_p.A307A|PLK1S1_uc010zsi.1_Silent_p.A277A|PLK1S1_uc010zsj.1_RNA|uc002wsc.2_Intron|PLK1S1_uc002wsd.2_RNA	NM_018474	NP_060944	Q2M2Z5	KIZ_HUMAN	polo-like kinase 1 substrate 1 isoform 1	410					spindle organization	centrosome	protein kinase binding				0						GAATAGAGGCCTTAAAATTAA	0.408000													20	39					5.35267e-07	5.80821e-07	1	0
PYGB	5834	broad.mit.edu	37	20	25276260	25276260	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr20:25276260A>G	uc002wup.2	+	19	2442	c.2333A>G	c.(2332-2334)TAT>TGT	p.Y778C	ABHD12_uc002wuq.2_Intron|ABHD12_uc002wur.2_Intron	NM_002862	NP_002853	P11216	PYGB_HUMAN	brain glycogen phosphorylase	778					glucose metabolic process|glycogen catabolic process	cytoplasm	glycogen phosphorylase activity|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					Pyridoxal Phosphate(DB00114)	TTTGCAGACTATGAAGCCTAC	0.632000													22	88					0	0	0	0
NFATC2	4773	broad.mit.edu	37	20	50140011	50140011	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr20:50140011C>T	uc002xwd.2	-	2	989	c.769G>A	c.(769-771)GCC>ACC	p.A257T	NFATC2_uc002xwc.2_Missense_Mutation_p.A257T|NFATC2_uc010zyv.1_Missense_Mutation_p.A38T|NFATC2_uc010zyw.1_Missense_Mutation_p.A38T|NFATC2_uc010zyx.1_Missense_Mutation_p.A237T|NFATC2_uc010zyy.1_Missense_Mutation_p.A38T|NFATC2_uc010zyz.1_Missense_Mutation_p.A38T|NFATC2_uc002xwe.2_Missense_Mutation_p.A237T	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	257	3 X approximate SP repeats.				B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					AAGGCCTCGGCGCACGAATGC	0.741000													9	36					0	0	0	0
DIDO1	11083	broad.mit.edu	37	20	61510637	61510637	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr20:61510637G>C	uc002ydr.1	-	16	6935	c.6671C>G	c.(6670-6672)CCG>CGG	p.P2224R	DIDO1_uc002yds.1_Missense_Mutation_p.P2224R	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	2224					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTCGGGCTTCGGGTCCCGAGC	0.483000													3	13					0	0	0	0
YTHDF1	54915	broad.mit.edu	37	20	61834905	61834905	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr20:61834905G>C	uc002yeh.2	-	4	681	c.387C>G	c.(385-387)TTC>TTG	p.F129L	YTHDF1_uc011aaq.1_Missense_Mutation_p.F79L	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	129										ovary(2)	2						CCCATGCTGAGAACGCAGGGT	0.567000													20	50					0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011993	46011993	+	Missense_Mutation	SNP	A	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr21:46011993A>C	uc002zfm.2	-	1	394	c.373T>G	c.(373-375)TGT>GGT	p.C125G	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	125	29 X 5 AA repeats of C-C-X(3).|9.					keratin filament					0						ACGGACACACAGCACACAGGC	0.642000													6	63					0	0	0	0
psiTPTE22	387590	broad.mit.edu	37	22	17178451	17178451	+	RNA	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr22:17178451G>C	uc002zls.1	+	3		c.533G>C								Homo sapiens cDNA FLJ10437 fis, clone NT2RP1000581.												0						AGGCGGATCTGCTTGAGGTTG	0.577000													36	56					0	0	0	0
GRM2	2912	broad.mit.edu	37	3	51746779	51746779	+	Silent	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr3:51746779C>T	uc010hlv.2	+	3	980	c.741C>T	c.(739-741)CGC>CGT	p.R247R	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	247	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	CCATGAGCCGCGCGGCCTTTG	0.647000													3	37					0	0	0	0
SUCLG2	8801	broad.mit.edu	37	3	67546294	67546294	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr3:67546294G>T	uc003dna.3	-	9	1018	c.990C>A	c.(988-990)TTC>TTA	p.F330L	SUCLG2_uc010hob.2_Intron	NM_003848	NP_003839	Q96I99	SUCB2_HUMAN	succinate-CoA ligase, GDP-forming beta subunit	330					succinyl-CoA metabolic process|tricarboxylic acid cycle	mitochondrial matrix	ATP binding|GTP binding|succinate-CoA ligase (GDP-forming) activity			central_nervous_system(1)|skin(1)	2		Renal(2;0.00294)|Lung NSC(201;0.012)|Hepatocellular(537;0.121)		BRCA - Breast invasive adenocarcinoma(55;3.53e-05)|Epithelial(33;0.000153)	Succinic acid(DB00139)	CAAGATCCAAGAAGTTGGCTG	0.443000													17	31					1.99824e-07	2.18379e-07	1	0
FAM86D	692099	broad.mit.edu	37	3	75475709	75475709	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr3:75475709T>C	uc003dpp.3	-	7	888	c.529A>G	c.(529-531)ATC>GTC	p.I177V	FAM86D_uc003dpo.3_RNA|FAM86D_uc003dps.3_RNA|FAM86D_uc003dpq.3_Missense_Mutation_p.I85V|FAM86D_uc003dpr.3_RNA	NR_024241				RecName: Full=Protein FAM86B1;												0						CTCCGCAGGATCCCGACCAGC	0.562000													3	25					0	0	0	0
ZNF654	55279	broad.mit.edu	37	3	88189025	88189025	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr3:88189025G>C	uc003dqv.2	+	1	764	c.565G>C	c.(565-567)GAC>CAC	p.D189H	CGGBP1_uc003dqu.2_Intron	NM_018293	NP_060763	Q8IZM8	ZN654_HUMAN	zinc finger protein 654	189					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(201;0.0283)		UCEC - Uterine corpus endometrioid carcinoma (27;0.194)|LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00661)		CCATCCAAAAGACATATATGC	0.284000													6	13					0	0	0	0
OR5H15	403274	broad.mit.edu	37	3	97888223	97888223	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr3:97888223A>T	uc011bgu.1	+	1	680	c.680A>T	c.(679-681)GAA>GTA	p.E227V		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ACAGTCTTAGAAAAGAAATCT	0.358000													5	96					0	0	0	0
SLC9A10	285335	broad.mit.edu	37	3	111918181	111918181	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr3:111918181G>A	uc003dyu.2	-	20	2732	c.2510C>T	c.(2509-2511)GCT>GTT	p.A837V	SLC9A10_uc011bhu.1_Missense_Mutation_p.A100V|SLC9A10_uc010hqc.2_Missense_Mutation_p.A789V	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	837					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						ATTAATTCCAGCACCTTCAGT	0.303000													3	92					0	0	0	0
POLQ	10721	broad.mit.edu	37	3	121200622	121200622	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr3:121200622G>A	uc003eee.3	-	19	6137	c.6008C>T	c.(6007-6009)CCG>CTG	p.P2003L	POLQ_uc003eed.2_Missense_Mutation_p.P1175L	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	2003					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		ATGAAGAGTCGGCTCCTGAGA	0.438000								DNA_polymerases_(catalytic_subunits)					16	116					0	0	0	0
TF	7018	broad.mit.edu	37	3	133486976	133486976	+	Silent	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr3:133486976A>G	uc003epu.1	+	18	3318	c.1590A>G	c.(1588-1590)AAA>AAG	p.K530K	TF_uc011blt.1_Silent_p.K403K|TF_uc003epw.1_Intron|TF_uc003epv.1_Silent_p.K530K	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	530	Transferrin-like 2.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	CCAACAACAAAGAGGGATACT	0.443000													14	85					0	0	0	0
MCCC1	56922	broad.mit.edu	37	3	182759449	182759449	+	Silent	SNP	A	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr3:182759449A>C	uc003fle.2	-	11	1310	c.1173T>G	c.(1171-1173)CCT>CCG	p.P391P	MCCC1_uc010hxi.2_RNA|MCCC1_uc011bqo.1_RNA|MCCC1_uc003flf.2_Silent_p.P274P|MCCC1_uc003flg.2_Silent_p.P282P|MCCC1_uc011bqp.1_Silent_p.P344P	NM_020166	NP_064551	Q96RQ3	MCCA_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	391	Biotin carboxylation.				biotin metabolic process|leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.84e-14)|Ovarian(172;0.0355)		all cancers(12;1.8e-44)|Epithelial(37;3.23e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;5.07e-21)		Biotin(DB00121)	AGTTATTGCTAGGATCTTCTG	0.488000													12	206					0	0	0	0
HTR3C	170572	broad.mit.edu	37	3	183773130	183773130	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr3:183773130C>G	uc003fmk.2	+	3	299	c.265C>G	c.(265-267)CTG>GTG	p.L89V		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	89	Extracellular (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			GACATCATTCCTGTGGATGGA	0.403000													23	105					0	0	0	0
TBC1D14	57533	broad.mit.edu	37	4	6925212	6925212	+	Silent	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr4:6925212C>T	uc011bwg.1	+	2	175	c.96C>T	c.(94-96)CAC>CAT	p.H32H	TBC1D14_uc003gjs.3_Silent_p.H32H	NM_001113361	NP_001106832	Q9P2M4	TBC14_HUMAN	TBC1 domain family, member 14 isoform a	32						intracellular	Rab GTPase activator activity			ovary(1)|pancreas(1)	2						ACCTGCAACACGTCAATCTCA	0.562000													9	108					0	0	0	0
LAP3	51056	broad.mit.edu	37	4	17583958	17583958	+	Silent	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr4:17583958A>G	uc003gph.1	+	4	483	c.321A>G	c.(319-321)GGA>GGG	p.G107G	LAP3_uc010ieg.2_Intron	NM_015907	NP_056991	P28838	AMPL_HUMAN	leucine aminopeptidase 3	107					proteolysis	nucleus	aminopeptidase activity|magnesium ion binding|manganese ion binding|metalloexopeptidase activity|zinc ion binding				0						AGGCAGCTGGAATCGACGAAC	0.438000													3	24					0	0	0	0
EPHA5	2044	broad.mit.edu	37	4	66197778	66197778	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr4:66197778A>T	uc003hcy.2	-	17	3114	c.2921T>A	c.(2920-2922)CTA>CAA	p.L974Q	EPHA5_uc003hcx.2_Missense_Mutation_p.L906Q|EPHA5_uc003hcz.2_Missense_Mutation_p.L952Q|EPHA5_uc011cah.1_Missense_Mutation_p.L975Q|EPHA5_uc011cai.1_Missense_Mutation_p.L953Q|EPHA5_uc003hda.2_Missense_Mutation_p.L975Q	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	974	Cytoplasmic (Potential).|SAM.				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						GATTGCCTCTAGCCATTCACC	0.398000										TSP Lung(17;0.13)			22	49					0	0	0	0
Unknown	0	broad.mit.edu	37	4	88813950	88813950	+	Silent	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr4:88813950G>A	uc010iko.1	+	3	783	c.783G>A	c.(781-783)AAG>AAA	p.K261K						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		TGGCAGTCAAGCACTTTTCTG	0.453000													28	91					0	0	0	0
CCRN4L	25819	broad.mit.edu	37	4	139964425	139964425	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr4:139964425G>A	uc003ihl.2	+	2	581	c.388G>A	c.(388-390)GTG>ATG	p.V130M	CCRN4L_uc003ihk.1_Missense_Mutation_p.V130M	NM_012118	NP_036250	Q9UK39	NOCT_HUMAN	CCR4 carbon catabolite repression 4-like	130					rhythmic process|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1	all_hematologic(180;0.162)					GAGGGATTTTGTGGATCTGAG	0.547000													34	130					0	0	0	0
ZNF330	27309	broad.mit.edu	37	4	142147942	142147942	+	Missense_Mutation	SNP	A	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr4:142147942A>C	uc003iiq.3	+	5	453	c.233A>C	c.(232-234)AAG>ACG	p.K78T	ZNF330_uc011chl.1_Missense_Mutation_p.K18T	NM_014487	NP_055302	Q9Y3S2	ZN330_HUMAN	zinc finger protein 330	78	C4-type 2 (Potential).					chromosome, centromeric region|midbody|nucleolus	protein binding|zinc ion binding				0	all_hematologic(180;0.162)					TGCATGATGAAGTCTTCAGAC	0.388000													29	176					0	0	0	0
RAB9BP1	9366	broad.mit.edu	37	5	104435382	104435382	+	RNA	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr5:104435382T>C	uc003kok.2	+	1		c.208T>C				NR_000039				Homo sapiens RAB9, member RAS oncogene family, pseudogene 1 (RAB9P1), non-coding RNA.												0						GGAGTGATTCTGAAGCCTGAG	0.403000													6	86					0	0	0	0
H2AFY	9555	broad.mit.edu	37	5	134724631	134724631	+	Silent	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr5:134724631G>A	uc003lam.1	-	2	363	c.153C>T	c.(151-153)GCC>GCT	p.A51A	H2AFY_uc003lao.1_Silent_p.A51A|H2AFY_uc003lan.1_Silent_p.A51A|H2AFY_uc003lap.1_RNA|H2AFY_uc003laq.1_RNA|H2AFY_uc003lar.1_RNA|H2AFY_uc011cxz.1_Silent_p.A51A|H2AFY_uc003las.1_Silent_p.A51A|H2AFY_uc003lat.1_Silent_p.A51A	NM_138610	NP_613258	O75367	H2AY_HUMAN	H2A histone family, member Y isoform 3	51	Histone H2A.				chromatin modification|dosage compensation|nucleosome assembly	Barr body|nucleosome	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ATTCCAGGACGGCGGCCATGT	0.532000													23	91					0	0	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140755360	140755360	+	Silent	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr5:140755360C>T	uc003ljy.1	+	1	1710	c.1710C>T	c.(1708-1710)GAC>GAT	p.D570D	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.D570D	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	570	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCCCACAGACGGTTCCACTG	0.667000													48	168					0	0	0	0
LARP1	23367	broad.mit.edu	37	5	154179561	154179561	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr5:154179561G>T	uc003lvp.2	+	10	2104	c.1675G>T	c.(1675-1677)GAA>TAA	p.E559*	LARP1_uc003lvo.2_Nonsense_Mutation_p.E482*|LARP1_uc010jie.1_Nonsense_Mutation_p.E354*	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	559							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GAACTGGATTGAAGTGAAGAA	0.577000													20	58					7.45023e-12	8.3815e-12	1	0
HIST1H2AG	8969	broad.mit.edu	37	6	27101004	27101004	+	Silent	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr6:27101004C>T	uc003niw.2	+	1	188	c.154C>T	c.(154-156)CTG>TTG	p.L52L	HIST1H2BJ_uc003niu.1_5'Flank|HIST1H2BJ_uc003niv.2_5'Flank	NM_021064	NP_066408	P0C0S8	H2A1_HUMAN	histone cluster 1, H2ag	52					nucleosome assembly	nucleosome|nucleus	DNA binding|enzyme binding				0						GCCGGTGTATCTGGCAGCGGT	0.677000													14	51					0	0	0	0
NKAPL	222698	broad.mit.edu	37	6	28227211	28227211	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr6:28227211G>A	uc003nkt.2	+	1	114	c.62G>A	c.(61-63)CGC>CAC	p.R21H	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532	Q5M9Q1	NKAPL_HUMAN	NFKB activating protein-like	21										upper_aerodigestive_tract(1)|ovary(1)	2						AGAAGGCGACGCAGCTCCTCG	0.667000													5	73					0	0	0	0
ZNF323	64288	broad.mit.edu	37	6	28294189	28294189	+	Silent	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr6:28294189G>A	uc003nla.2	-	4	1375	c.975C>T	c.(973-975)TGC>TGT	p.C325C	ZNF323_uc003nld.2_Silent_p.C325C|ZNF323_uc010jra.2_Silent_p.C325C|ZNF323_uc003nlb.2_Silent_p.C166C|ZNF323_uc010jrb.2_Silent_p.C166C|ZNF323_uc003nlc.2_Silent_p.C325C	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323	325	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CACACACTTTGCATTCATATG	0.493000													17	276					0	0	0	0
CD2AP	23607	broad.mit.edu	37	6	47471022	47471022	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr6:47471022A>G	uc003oyw.2	+	2	467	c.11A>G	c.(10-12)TAT>TGT	p.Y4C		NM_012120	NP_036252	Q9Y5K6	CD2AP_HUMAN	CD2-associated protein	4	Interaction with ANLN and localization to the midbody.|SH3 1; truncated.				cell division|mitosis|protein complex assembly|signal transduction|substrate-dependent cell migration, cell extension	cytoplasm|filamentous actin|nucleolus|plasma membrane|ruffle	SH3 domain binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2			Lung(136;0.105)|LUSC - Lung squamous cell carcinoma(51;0.138)			TTAGTTGACTATATTGTGGAG	0.318000													22	65					0	0	0	0
OGFRL1	79627	broad.mit.edu	37	6	72011631	72011631	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr6:72011631C>T	uc003pfx.1	+	7	1398	c.1235C>T	c.(1234-1236)ACT>ATT	p.T412I		NM_024576	NP_078852	Q5TC84	OGRL1_HUMAN	opioid growth factor receptor-like 1	412						membrane	receptor activity				0						AAAACAGTTACTACTCCCACA	0.423000													34	72					0	0	0	0
EPHA7	2045	broad.mit.edu	37	6	93982120	93982120	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr6:93982120C>A	uc003poe.2	-	6	1586	c.1345G>T	c.(1345-1347)GTA>TTA	p.V449L	EPHA7_uc003pof.2_Missense_Mutation_p.V449L|EPHA7_uc011eac.1_Missense_Mutation_p.V449L	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	449	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		TCCTTCATTACTCCACTCACT	0.448000													10	180					4.68919e-08	5.16148e-08	1	0
FIG4	9896	broad.mit.edu	37	6	110037703	110037703	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr6:110037703A>G	uc003ptt.2	+	3	436	c.221A>G	c.(220-222)AAT>AGT	p.N74S	FIG4_uc011eau.1_Intron	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	74					cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		GATCTTGGAAATAGAACAAAG	0.418000													41	160					0	0	0	0
REV3L	5980	broad.mit.edu	37	6	111689218	111689218	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr6:111689218G>A	uc003puy.3	-	14	6096	c.5773C>T	c.(5773-5775)CGG>TGG	p.R1925W	REV3L_uc003pux.3_Missense_Mutation_p.R1847W|REV3L_uc003puz.3_Missense_Mutation_p.R1847W|REV3L_uc003pva.1_RNA	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	1925					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		ATGAGGAGCCGTCCACCAATC	0.388000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					15	59					0	0	0	0
HSF2	3298	broad.mit.edu	37	6	122744792	122744792	+	Silent	SNP	A	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr6:122744792A>T	uc003pyu.2	+	10	1324	c.1137A>T	c.(1135-1137)TCA>TCT	p.S379S	HSF2_uc003pyv.2_Silent_p.S379S	NM_004506	NP_004497	Q03933	HSF2_HUMAN	heat shock transcription factor 2 isoform a	379	Hydrophobic repeat HR-C.				response to stress|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0				OV - Ovarian serous cystadenocarcinoma(136;0.00371)|all cancers(137;0.0299)|GBM - Glioblastoma multiforme(226;0.0586)		CCATGCTATCAGGAAGACAAT	0.338000													5	179					0	0	0	0
VTA1	51534	broad.mit.edu	37	6	142525136	142525136	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr6:142525136A>G	uc003qiw.2	+	7	727	c.712A>G	c.(712-714)ACT>GCT	p.T238A	VTA1_uc011edt.1_RNA|VTA1_uc011edu.1_Intron	NM_016485	NP_057569	Q9NP79	VTA1_HUMAN	Vps20-associated 1 homolog	238	Interaction with VPS4B (By similarity).				cellular membrane organization|endosome transport|protein transport	cytosol|endosome membrane	protein binding				0	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;1.34e-05)|GBM - Glioblastoma multiforme(68;0.00182)		AGCAAGTAATACTATCCAACC	0.383000													14	89					0	0	0	0
DNAH11	8701	broad.mit.edu	37	7	21747448	21747448	+	Silent	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr7:21747448T>C	uc003svc.2	+	41	6730	c.6699T>C	c.(6697-6699)GAT>GAC	p.D2233D		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2233	AAA 2 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AATGGAAAGATGGCAAGTAGT	0.388000									Kartagener_syndrome				22	39					0	0	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35131548	35131548	+	Silent	SNP	G	A	A	rs144021252	by1000genomes	TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr7:35131548G>A	uc003teq.1	-	20	2145	c.1038C>T	c.(1036-1038)TTC>TTT	p.F346F	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						TGGCACCTGCGAAGACAGCAT	0.388000													3	58					0	0	0	0
PCLO	27445	broad.mit.edu	37	7	82582565	82582565	+	Silent	SNP	A	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr7:82582565A>C	uc003uhx.2	-	5	7993	c.7704T>G	c.(7702-7704)TCT>TCG	p.S2568S	PCLO_uc003uhv.2_Silent_p.S2568S|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2499					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATCTTGGTGAAGACTTGTTGG	0.403000													53	135					0	0	0	0
CLDN15	24146	broad.mit.edu	37	7	100876196	100876196	+	Splice_Site	SNP	C	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr7:100876196C>A	uc003uyg.1	-	3	637	c.383_splice	c.e3-1	p.G128_splice	CLDN15_uc003uyh.1_Splice_Site_p.G128_splice	NM_014343	NP_055158	P56746	CLD15_HUMAN	claudin 15						calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					CCGCAGATACCTGGGGACCGG	0.652000													3	23					2.56e-06	2.75831e-06	1	0
MYL10	93408	broad.mit.edu	37	7	101256788	101256788	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr7:101256788G>C	uc003uyr.2	-	8	826	c.648C>G	c.(646-648)TGC>TGG	p.C216W		NM_138403	NP_612412	Q9BUA6	MYL10_HUMAN	myosin, light chain 10, regulatory	216	EF-hand 3.					mitochondrion	calcium ion binding			ovary(1)|breast(1)	2						TGATGACGTAGCACAGGTTTC	0.547000													6	143					0	0	0	0
FEZF1	389549	broad.mit.edu	37	7	121942225	121942225	+	Silent	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr7:121942225A>G	uc003vkd.2	-	4	1328	c.1254T>C	c.(1252-1254)CAT>CAC	p.H418H	FEZF1_uc003vkc.2_Silent_p.H368H|uc010lko.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	418	C2H2-type 6.				cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						GCTTGCGGACATGCTTCTTGA	0.498000													8	104					0	0	0	0
EXOC4	60412	broad.mit.edu	37	7	133682355	133682355	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr7:133682355C>T	uc003vrk.2	+	15	2352	c.2317C>T	c.(2317-2319)CGC>TGC	p.R773C	EXOC4_uc011kpo.1_Missense_Mutation_p.R672C|EXOC4_uc003vrl.2_Missense_Mutation_p.R383C|EXOC4_uc011kpp.1_Missense_Mutation_p.R305C|EXOC4_uc011kpq.1_Missense_Mutation_p.R61C	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	773					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				TATGGCTGACCGCTGCTTGCT	0.488000													10	30					0	0	0	0
TTC26	79989	broad.mit.edu	37	7	138827003	138827003	+	Silent	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr7:138827003T>C	uc003vus.2	+	5	465	c.351T>C	c.(349-351)GCT>GCC	p.A117A	TTC26_uc003vuq.2_Silent_p.A117A|TTC26_uc011kqm.1_Silent_p.A117A|TTC26_uc003vur.3_Silent_p.A117A|TTC26_uc011kqn.1_Silent_p.A117A|TTC26_uc011kqo.1_Silent_p.A86A|TTC26_uc011kqp.1_Silent_p.A12A|TTC26_uc003vut.2_5'UTR|TTC26_uc011kqq.1_Silent_p.A117A	NM_024926	NP_079202	A0AVF1	TTC26_HUMAN	tetratricopeptide repeat domain 26 isoform 1	117	TPR 2.						binding			ovary(1)	1						TTTTTTCAGCTTCAAAAAGCC	0.348000													40	106					0	0	0	0
MGAM	8972	broad.mit.edu	37	7	141708357	141708357	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr7:141708357C>G	uc003vwy.2	+	3	233	c.179C>G	c.(178-180)CCA>CGA	p.P60R		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	60	Ser/Thr-rich.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ACTGGTACCCCAGATCCTGGA	0.483000													12	29					0	0	0	0
PRKDC	5591	broad.mit.edu	37	8	48868498	48868498	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr8:48868498G>A	uc003xqi.2	-	4	392	c.335C>T	c.(334-336)ACC>ATC	p.T112I	PRKDC_uc003xqj.2_Missense_Mutation_p.T112I|PRKDC_uc011ldh.1_Missense_Mutation_p.T112I	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	112					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				ATAAACACTGGTACAAGTGTT	0.308000								NHEJ					4	32					0	0	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70667779	70667779	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr8:70667779T>C	uc003xyl.2	-	4	1845	c.1138A>G	c.(1138-1140)AAA>GAA	p.K380E	SLCO5A1_uc010lzb.2_Missense_Mutation_p.K380E|SLCO5A1_uc011lfa.1_Intron|SLCO5A1_uc003xyk.2_Missense_Mutation_p.K380E|SLCO5A1_uc010lzc.2_Missense_Mutation_p.K380E	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	380	Cytoplasmic (Potential).|Poly-Lys.					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			TTTTTCTTTTTCTTTTTCTTG	0.383000													8	105					0	0	0	0
HNRNPK	3190	broad.mit.edu	37	9	86587824	86587824	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr9:86587824G>C	uc004ang.3	-	10	804	c.580C>G	c.(580-582)CTT>GTT	p.L194V	HNRNPK_uc011lsw.1_5'UTR|HNRNPK_uc004and.3_5'UTR|HNRNPK_uc004ank.3_Missense_Mutation_p.L194V|HNRNPK_uc004anf.3_Missense_Mutation_p.L194V|HNRNPK_uc004anh.3_Missense_Mutation_p.L170V|HNRNPK_uc011lsx.1_Missense_Mutation_p.L170V|HNRNPK_uc004ani.3_Missense_Mutation_p.L194V|HNRNPK_uc004anj.3_Missense_Mutation_p.L194V|HNRNPK_uc004ann.3_Missense_Mutation_p.L170V|HNRNPK_uc004anl.3_Missense_Mutation_p.L194V|HNRNPK_uc004anm.3_Missense_Mutation_p.L194V	NM_031262	NP_112552	P61978	HNRPK_HUMAN	heterogeneous nuclear ribonucleoprotein K	194	5 X 4 AA repeats of G-X-G-G.|Necessary for interaction with DDX1.|2 X 22 AA approximate repeats.|Interaction with ASFV p30.|KH 2.				interspecies interaction between organisms|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of receptor-mediated endocytosis|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of low-density lipoprotein particle clearance|signal transduction	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nuclear chromatin|nucleoplasm	protein binding|RNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|single-stranded DNA binding			skin(1)	1						CCTCCAATAAGAACAACTCTG	0.343000													10	116					0	0	0	0
ZNF462	58499	broad.mit.edu	37	9	109688535	109688535	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr9:109688535A>G	uc004bcz.2	+	3	2631	c.2342A>G	c.(2341-2343)TAC>TGC	p.Y781C	ZNF462_uc010mto.2_Missense_Mutation_p.Y629C|ZNF462_uc004bda.2_Missense_Mutation_p.Y629C	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	781					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						ACCCACGATTACAATGCCACC	0.448000													6	99					0	0	0	0
LPAR1	1902	broad.mit.edu	37	9	113703901	113703901	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr9:113703901A>G	uc004bfa.2	-	4	848	c.593T>C	c.(592-594)ATG>ACG	p.M198T	LPAR1_uc011lwm.1_Missense_Mutation_p.M199T|LPAR1_uc004bfb.2_Missense_Mutation_p.M198T|LPAR1_uc004bfc.2_Missense_Mutation_p.M198T|LPAR1_uc011lwn.1_Missense_Mutation_p.M180T|LPAR1_uc011lwo.1_Missense_Mutation_p.M199T|LPAR1_uc010mub.2_Missense_Mutation_p.M198T	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	198	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						GAGGGGTGCCATGTTGGAACA	0.458000													90	67					0	0	0	0
PHKA2	5256	broad.mit.edu	37	X	18924612	18924612	+	Splice_Site	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chrX:18924612C>T	uc004cyv.3	-	25	3236	c.2806_splice	c.e25+1	p.G936_splice	PHKA2_uc004cyu.3_Splice_Site_p.G234_splice|PHKA2_uc010nfe.1_5'Flank|PHKA2_uc010nff.1_5'Flank	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)						glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					GGGCATCTCACCTGAGCAGTT	0.627000													24	55					0	0	0	0
PTCHD1	139411	broad.mit.edu	37	X	23398142	23398142	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chrX:23398142G>T	uc004dal.3	+	2	794	c.786G>T	c.(784-786)CAG>CAT	p.Q262H	PTCHD1_uc010nfu.1_Missense_Mutation_p.Q262H	NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	262					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						AAGATTTCCAGAAGACCAGCC	0.522000													36	173					9.04072e-19	1.02461e-18	1	0
WNK3	65267	broad.mit.edu	37	X	54334451	54334451	+	Silent	SNP	A	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chrX:54334451A>G	uc004dtd.1	-	5	1432	c.993T>C	c.(991-993)GTT>GTC	p.V331V	WNK3_uc004dtc.1_Silent_p.V331V	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	331	Protein kinase.				intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						CAAAAGCATAAACATCTACGG	0.398000													7	75					0	0	0	0
SLC16A2	6567	broad.mit.edu	37	X	73740906	73740906	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chrX:73740906G>A	uc004ebt.2	+	2	900	c.734G>A	c.(733-735)CGA>CAA	p.R245Q		NM_006517	NP_006508	P36021	MOT8_HUMAN	solute carrier family 16, member 2	171	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			breast(2)|ovary(1)	3					Pyruvic acid(DB00119)	TTGGGCTGCCGAATCACAGCA	0.537000													6	85					0	0	0	0
CYLC1	1538	broad.mit.edu	37	X	83128622	83128622	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chrX:83128622C>G	uc004eei.1	+	4	927	c.906C>G	c.(904-906)GAC>GAG	p.D302E	CYLC1_uc004eeh.1_Missense_Mutation_p.D301E	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	302	1.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						AATCTGAAGACTCAAAGGATG	0.323000													10	52					0	0	0	0
SPANXE	171489	broad.mit.edu	37	X	140786553	140786553	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chrX:140786553G>T	uc004fbq.2	-	1	103	c.10C>A	c.(10-12)CAA>AAA	p.Q4K		NM_145665	NP_663698	Q8TAD1	SPNXE_HUMAN	SPANX family, member E	4						cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					GCACTGGATTGTTTGTCCATT	0.433000													43	184					3.37043e-27	3.87726e-27	1	0
FMR1	2332	broad.mit.edu	37	X	147026445	147026445	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chrX:147026445C>T	uc010nst.2	+	15	1717	c.1528C>T	c.(1528-1530)CTC>TTC	p.L510F	FMR1_uc004fcj.2_Missense_Mutation_p.L487F|FMR1_uc004fck.3_Intron|FMR1_uc004fcl.3_Missense_Mutation_p.L350F|FMR1_uc011mxa.1_Missense_Mutation_p.L157F	NM_002024	NP_002015	Q06787	FMR1_HUMAN	fragile X mental retardation 1	510	Interaction with RANBP9.				mRNA transport|negative regulation of translational initiation	cytoplasm|mRNA cap binding complex|nucleolus|nucleoplasm|soluble fraction	mRNA binding|protein binding			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CAGAGACGAACTCAGTGATTG	0.388000									Fragile_X_syndrome				3	59					0	0	0	0
SLC9A11	284525	broad.mit.edu	37	1	173552688	173552688	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr1:173552688delA	uc001giz.2	-	6	1020	c.597delT	c.(595-597)TTTfs	p.F199fs	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	199	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						GAAAATTTCCAAAAAAAATTG	0.279													---	---	---							
Unknown	0	broad.mit.edu	37	1	203872719	203872720	+	IGR	INS	-	T	T	rs144470926		TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr1:203872719_203872720insT								SNRPE (32441 upstream) : C1orf157 (128855 downstream)																							CTGATGTTGTGTTTTTTTTTTC	0.252													---	---	---							
Unknown	0	broad.mit.edu	37	11	9682506	9682506	+	IGR	DEL	A	-	-			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr11:9682506delA								WEE1 (71195 upstream) : SWAP70 (3122 downstream)																							TCTGGGCTGTaaaaaaaaaaa	0.234													---	---	---							
Unknown	0	broad.mit.edu	37	12	54206259	54206260	+	IGR	INS	-	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr12:54206259_54206260insT								CALCOCO1 (84952 upstream) : HOXC13 (126316 downstream)																							tccttcctttcttctttctttc	0.000													---	---	---							
DCN	1634	broad.mit.edu	37	12	91558464	91558464	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr12:91558464delG	uc001tbs.2	-	2	336	c.242delC	c.(241-243)CCTfs	p.P81fs	DCN_uc001tbo.2_Intron|DCN_uc001tbp.2_Intron|DCN_uc001tbq.2_Frame_Shift_Del_p.P81fs|DCN_uc001tbr.2_Intron|DCN_uc001tbt.2_Frame_Shift_Del_p.P81fs|DCN_uc001tbu.2_Frame_Shift_Del_p.P81fs	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	81	LRR 1.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						AGTTGTGTCAGGGGGAAGATC	0.403													---	---	---							
FBXO33	254170	broad.mit.edu	37	14	39871062	39871078	+	Splice_Site	DEL	AATTCTATAAGGAAAAC	-	-			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr14:39871062_39871078delAATTCTATAAGGAAAAC	uc001wvk.2	-	3	1049	c.711_splice	c.e3-1	p.Q237_splice		NM_203301	NP_976046	Q7Z6M2	FBX33_HUMAN	F-box protein 33												0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00121)|Epithelial(34;0.169)	GBM - Glioblastoma multiforme(112;0.0425)		ACAGTTGCTGAATTCTATAAGGAAAACACATGCCACA	0.364													---	---	---							
Unknown	0	broad.mit.edu	37	15	22780583	22780592	+	IGR	DEL	GAATGAAGAA	-	-			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr15:22780583_22780592delGAATGAAGAA								GOLGA6L1 (34581 upstream) : TUBGCP5 (52803 downstream)																							AAGAGGCGATGAATGAAGAAGCCAACCAGC	0.471													---	---	---							
Unknown	0	broad.mit.edu	37	15	23609252	23609253	+	5'Flank	INS	-	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr15:23609252_23609253insT	uc001ywf.2	-											DQ583953																		AGCAGAGGGTGGCTGCCAGCGC	0.639													---	---	---							
Unknown	0	broad.mit.edu	37	15	40604470	40604470	+	IGR	DEL	T	-	-	rs35116724		TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr15:40604470delT								PLCB2 (4296 upstream) : C15orf52 (19184 downstream)																							TGGTCCAACCTTTTTTTTTTT	0.378													---	---	---							
LMAN1	3998	broad.mit.edu	37	18	57026573	57026574	+	5'Flank	INS	-	C	C	rs140141851	by1000genomes	TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr18:57026573_57026574insC	uc002lhz.2	-						LMAN1_uc010xek.1_5'Flank	NM_005570	NP_005561	P49257	LMAN1_HUMAN	lectin, mannose-binding, 1 precursor						blood coagulation|ER to Golgi vesicle-mediated transport|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	mannose binding|metal ion binding|unfolded protein binding			skin(1)	1		Colorectal(73;0.0946)			Antihemophilic Factor(DB00025)	AGCCCGGGGGACCCCCAAGGGC	0.752													---	---	---							
ZNF513	130557	broad.mit.edu	37	2	27600905	27600905	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr2:27600905delT	uc002rkk.2	-	4	1333	c.1133delA	c.(1132-1134)CACfs	p.H378fs	ZNF513_uc002rkj.2_Frame_Shift_Del_p.H316fs	NM_144631	NP_653232	Q8N8E2	ZN513_HUMAN	zinc finger protein 513	378	C2H2-type 4.				regulation of transcription, DNA-dependent|response to stimulus|retina development in camera-type eye|transcription, DNA-dependent|visual perception	nucleus	transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGTCTTCATGTGCCGGGCCAG	0.622													---	---	---							
Unknown	0	broad.mit.edu	37	2	34041837	34041838	+	IGR	INS	-	CCTCC	CCTCC	rs141683394	by1000genomes	TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr2:34041837_34041838insCCTCC								MYADML (88553 upstream) : None (None downstream)																							tcttctcttctcctcccctccc	0.000													---	---	---							
ALMS1	7840	broad.mit.edu	37	2	73678468	73678468	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr2:73678468delA	uc002sje.1	+	10	4928	c.4817delA	c.(4816-4818)GAAfs	p.E1606fs	ALMS1_uc002sjf.1_Frame_Shift_Del_p.E1562fs|ALMS1_uc002sjg.2_Frame_Shift_Del_p.E992fs|ALMS1_uc002sjh.1_Frame_Shift_Del_p.E992fs	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1604	23.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GGACCTACTGAAAAAAAGACT	0.453													---	---	---							
SEC23B	10483	broad.mit.edu	37	20	18485751	18485751	+	5'Flank	DEL	A	-	-	rs74180905		TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr20:18485751delA	uc002wqz.1	+						SEC23B_uc002wra.1_5'Flank|SEC23B_uc002wrb.1_5'Flank|SEC23B_uc010zsb.1_5'Flank|SEC23B_uc002wrc.1_5'Flank	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B						ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						CCTCATTCAGAAAAAAAAAAA	0.373													---	---	---							
Unknown	0	broad.mit.edu	37	21	18570199	18570200	+	IGR	INS	-	AGGA	AGGA	rs149741218	by1000genomes	TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr21:18570199_18570200insAGGA								C21orf34 (588105 upstream) : CXADR (315130 downstream)																							ggaaggaagggaggaaggaagg	0.104													---	---	---							
Unknown	0	broad.mit.edu	37	21	33237268	33237279	+	IGR	DEL	CCTTCCCTCCCT	-	-			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr21:33237268_33237279delCCTTCCCTCCCT								SFRS15 (132837 upstream) : HUNK (8349 downstream)																							GTATCTtcccccttccctccctccttccctcc	0.066													---	---	---							
Unknown	0	broad.mit.edu	37	4	27162862	27162863	+	IGR	INS	-	T	T	rs143128646	by1000genomes	TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr4:27162862_27162863insT								STIM2 (137054 upstream) : None (None downstream)																							TTCATGTTCTATTTTTTTTTGG	0.376													---	---	---							
Unknown	0	broad.mit.edu	37	5	4912875	4912882	+	IGR	DEL	GAAGGAAG	-	-			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr5:4912875_4912882delGAAGGAAG								None (None upstream) : LOC340094 (121590 downstream)																							ggaaagaaatgaaggaaggaaggaagga	0.111													---	---	---							
Unknown	0	broad.mit.edu	37	6	25261990	25261990	+	5'Flank	DEL	A	-	-	rs150117437		TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr6:25261990delA	uc003nex.3	-											Homo sapiens cDNA clone IMAGE:5297808.																		TGGACtatttaaaaaaaaaaa	0.179													---	---	---							
HLA-F	3134	broad.mit.edu	37	6	29694802	29694803	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr6:29694802_29694803insT	uc003nno.3	+	7	1303_1304	c.1179_1180insT	c.(1177-1182)TTGTTTfs	p.L393fs	HLA-F_uc011dlx.1_Intron|HLA-F_uc011dly.1_Intron|LOC285830_uc003nnp.2_RNA|LOC285830_uc011dlz.1_RNA	NM_001098479	NP_001091949	P30511	HLAF_HUMAN	major histocompatibility complex, class I, F	Error:Variant_position_missing_in_P30511_after_alignment					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity				0						TGTGGATCTTGTTTTTTTTGTG	0.535													---	---	---							
Unknown	0	broad.mit.edu	37	8	93591561	93591562	+	IGR	INS	-	TTTC	TTTC	rs34835405		TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr8:93591561_93591562insTTTC								RUNX1T1 (483855 upstream) : C8orf83 (304303 downstream)																							ctttctttctttttctttcttt	0.000													---	---	---							
C9orf172	389813	broad.mit.edu	37	9	139739061	139739062	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chr9:139739061_139739062insA	uc011meh.1	+	1	195_196	c.195_196insA	c.(193-198)GAGACCfs	p.E65fs		NM_001080482	NP_001073951	C9J069	CI172_HUMAN	chromosome 9 open reading frame 172	65_66											0						CGGCCATGGAGACCCTGCCGGA	0.708													---	---	---							
SPANXC	64663	broad.mit.edu	37	X	140336770	140336771	+	5'Flank	INS	-	G	G			TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chrX:140336770_140336771insG	uc004fbk.2	-						SPANXC_uc004fbl.2_Intron	NM_022661	NP_073152	Q9NY87	SPNXC_HUMAN	sperm protein associated with the nucleus, X							cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					AGGGTGGCTTCACATCACAAAG	0.559													---	---	---							
Unknown	0	broad.mit.edu	37	X	144082693	144082694	+	IGR	DEL	AT	-	-	rs34541225	by1000genomes	TCGA-CN-5367-01A-01D-1434-08	TCGA-CN-5367-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	57adb398-48c5-4a14-a43e-f79a19befbda	3c6ca4c1-7112-4c0c-9d21-b00717fcd4de	g.chrX:144082693_144082694delAT								None (None upstream) : SPANXN1 (246413 downstream)																							acacacacacatacacacacac	0.010													---	---	---							
