Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
SLC45A1	50651	broad.mit.edu	37	1	8390837	8390837	+	Silent	SNP	C	T	T	rs149921947	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:8390837C>T	uc001apb.2	+	4	1284	c.1284C>T	c.(1282-1284)TCC>TCT	p.S428S	SLC45A1_uc001apc.2_Silent_p.S126S	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	428					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CCCTGACCTCCGGCTGTGACG	0.657													12	82					0	0	0	0
TARDBP	23435	broad.mit.edu	37	1	11080498	11080498	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:11080498G>C	uc001art.2	+	5	690	c.556G>C	c.(556-558)GAG>CAG	p.E186Q	TARDBP_uc010oap.1_Missense_Mutation_p.E70Q	NM_007375	NP_031401	Q13148	TADBP_HUMAN	TAR DNA binding protein	186	RRM 1.				3'-UTR-mediated mRNA stabilization|cell death|mRNA processing|negative regulation by host of viral transcription|RNA splicing|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|mRNA 3'-UTR binding|nucleotide binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0578)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.37e-07)|COAD - Colon adenocarcinoma(227;7.38e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)		AAGCCAAGATGAGCCTTTGAG	0.398													11	74					0	0	0	0
PINK1	65018	broad.mit.edu	37	1	20975048	20975048	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:20975048G>A	uc001bdm.2	+	6	1268	c.1174G>A	c.(1174-1176)GAG>AAG	p.E392K	PINK1_uc001bdn.2_Missense_Mutation_p.E85K	NM_032409	NP_115785	Q9BXM7	PINK1_HUMAN	PTEN induced putative kinase 1 precursor	392	Protein kinase.|Cytoplasmic (Potential).				cell death|intracellular protein kinase cascade|mitochondrion degradation|peptidyl-serine phosphorylation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of release of cytochrome c from mitochondria|regulation of protein complex assembly|regulation of protein ubiquitination|response to stress	cytosol|integral to membrane|mitochondrial outer membrane	ATP binding|C3HC4-type RING finger domain binding|calcium-dependent protein kinase activity|magnesium ion binding|protein serine/threonine kinase activity|ubiquitin protein ligase binding			ovary(2)|central_nervous_system(1)	3		all_lung(284;2.72e-05)|Lung NSC(340;2.94e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.21e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000146)|Kidney(64;0.000182)|GBM - Glioblastoma multiforme(114;0.000497)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CCTGGCTGATGAGAGCATCGG	0.612													3	29					0	0	0	0
HP1BP3	50809	broad.mit.edu	37	1	21103166	21103166	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:21103166C>T	uc001bdw.1	-	4	414	c.274G>A	c.(274-276)GAG>AAG	p.E92K	HP1BP3_uc001bdv.1_Missense_Mutation_p.E54K|HP1BP3_uc010odh.1_Missense_Mutation_p.E54K|HP1BP3_uc001bdy.1_Missense_Mutation_p.E92K|HP1BP3_uc001bdz.2_RNA|HP1BP3_uc001bea.2_Missense_Mutation_p.E91K|HP1BP3_uc001beb.2_Missense_Mutation_p.E92K	NM_016287	NP_057371	Q5SSJ5	HP1B3_HUMAN	HP1-BP74	92					nucleosome assembly	nucleosome|nucleus	DNA binding			central_nervous_system(1)|skin(1)	2		all_lung(284;6.55e-06)|Lung NSC(340;6.59e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.26e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00015)|GBM - Glioblastoma multiforme(114;0.000521)|Kidney(64;0.000529)|STAD - Stomach adenocarcinoma(196;0.00311)|KIRC - Kidney renal clear cell carcinoma(64;0.00687)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.201)		TGCTCTGCCTCACTCGAAGTA	0.423													21	102					0	0	0	0
SRRM1	10250	broad.mit.edu	37	1	24978971	24978971	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:24978971G>C	uc001bjm.2	+	7	996	c.772G>C	c.(772-774)GAA>CAA	p.E258Q	SRRM1_uc010oel.1_Missense_Mutation_p.E258Q|SRRM1_uc009vrh.1_Missense_Mutation_p.E219Q|SRRM1_uc009vri.1_Missense_Mutation_p.E175Q|SRRM1_uc010oem.1_RNA	NM_005839	NP_005830	Q8IYB3	SRRM1_HUMAN	serine/arginine repetitive matrix 1	258	Pro-rich.|Arg-rich.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nuclear matrix|nuclear speck	DNA binding|protein binding|RNA binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;1.01e-24)|Colorectal(126;5.95e-08)|COAD - Colon adenocarcinoma(152;3.24e-06)|GBM - Glioblastoma multiforme(114;0.000148)|BRCA - Breast invasive adenocarcinoma(304;0.00177)|KIRC - Kidney renal clear cell carcinoma(1967;0.00348)|STAD - Stomach adenocarcinoma(196;0.00483)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		AGAGCCTAAAGAACCTTCTCC	0.443													3	25					0	0	0	0
TIE1	7075	broad.mit.edu	37	1	43778831	43778831	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:43778831C>T	uc001ciu.2	+	13	2032	c.1953C>T	c.(1951-1953)CAC>CAT	p.H651H	TIE1_uc010okd.1_Silent_p.H651H|TIE1_uc010oke.1_Silent_p.H606H|TIE1_uc009vwq.2_Silent_p.H607H|TIE1_uc010okf.1_Silent_p.H296H|TIE1_uc010okg.1_Silent_p.H296H	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	651	Fibronectin type-III 3.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GACACCTCCACGCCCAGGCCC	0.637													6	45					0	0	0	0
ST3GAL3	6487	broad.mit.edu	37	1	44303969	44303969	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:44303969G>A	uc001ckc.2	+	5	465	c.288G>A	c.(286-288)ACG>ACA	p.T96T	ST3GAL3_uc009vwu.1_RNA|ST3GAL3_uc010okj.1_RNA|ST3GAL3_uc001cjz.2_Silent_p.T111T|ST3GAL3_uc001cka.2_Silent_p.T80T|ST3GAL3_uc001ckb.2_Silent_p.T165T|ST3GAL3_uc001ckd.2_Silent_p.T150T|ST3GAL3_uc001cke.2_Silent_p.T80T|ST3GAL3_uc001ckf.2_Silent_p.T134T|ST3GAL3_uc001ckg.2_Silent_p.T96T|ST3GAL3_uc001ckh.2_Silent_p.T111T|ST3GAL3_uc001cki.2_Silent_p.T96T|ST3GAL3_uc009vwv.2_Silent_p.T96T|ST3GAL3_uc001ckj.2_RNA|ST3GAL3_uc009vww.2_RNA|ST3GAL3_uc001ckk.2_Intron|ST3GAL3_uc009vwy.2_Silent_p.T2T|ST3GAL3_uc009vwx.2_RNA|ST3GAL3_uc001ckm.2_Silent_p.T95T|ST3GAL3_uc001ckl.2_Silent_p.T96T|ST3GAL3_uc009vwz.2_5'UTR|ST3GAL3_uc001ckn.2_RNA|ST3GAL3_uc001ckp.2_Silent_p.T95T|ST3GAL3_uc001cko.2_Silent_p.T80T|ST3GAL3_uc009vxa.2_Intron|ST3GAL3_uc001ckq.2_Silent_p.T80T|ST3GAL3_uc001ckr.2_Intron|ST3GAL3_uc009vxb.2_Silent_p.T80T	NM_006279	NP_006270	Q11203	SIAT6_HUMAN	sialyltransferase 6 isoform j	96	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	N-acetyllactosaminide alpha-2,3-sialyltransferase activity			ovary(3)	3	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0518)				CCTTGATGACGGCCATCTTCC	0.542													28	170					0	0	0	0
CDCP2	200008	broad.mit.edu	37	1	54610233	54610233	+	Silent	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:54610233C>G	uc001cwv.1	-	2	1181	c.333G>C	c.(331-333)CCG>CCC	p.P111P		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	111	CUB 1.					extracellular region				ovary(1)	1						TGAAGGGCGGCGGGGGCACCT	0.587													9	33					0	0	0	0
LRRC40	55631	broad.mit.edu	37	1	70618219	70618219	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:70618219C>G	uc001der.1	-	12	1388	c.1336G>C	c.(1336-1338)GAA>CAA	p.E446Q		NM_017768	NP_060238	Q9H9A6	LRC40_HUMAN	leucine rich repeat containing 40	446	LRR 14.									ovary(1)	1						TCCTTCAGTTCTACCATCCTG	0.323													7	35					0	0	0	0
AK5	26289	broad.mit.edu	37	1	77806120	77806120	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:77806120G>C	uc001dhn.2	+	6	1015	c.758G>C	c.(757-759)AGA>ACA	p.R253T	AK5_uc001dho.2_Missense_Mutation_p.R227T	NM_174858	NP_777283	Q9Y6K8	KAD5_HUMAN	adenylate kinase 5 isoform 1	253					ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	adenylate kinase activity|ATP binding|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			skin(1)	1						CTCAAAGAAAGATTACTGAAG	0.458													11	80					0	0	0	0
HSD3B2	3284	broad.mit.edu	37	1	119964589	119964589	+	Silent	SNP	G	A	A	rs114527791	by1000genomes	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:119964589G>A	uc001ehs.2	+	3	1238	c.465G>A	c.(463-465)CCG>CCA	p.P155P	HSD3B2_uc001eht.2_Silent_p.P155P|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	155			P -> L (in AH2; nonsalt-wasting form).		androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	CTCCATACCCGTACAGCAAAA	0.498													21	74					0	0	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145473612	145473612	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:145473612C>T	uc001enq.1	+	4	1577	c.284C>T	c.(283-285)TCG>TTG	p.S95L	NBPF10_uc001emp.3_Intron	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	95	ANK 3.										0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCGGTGGCCTCGCTGCTCCTT	0.721													9	47					0	0	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145473671	145473671	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:145473671C>G	uc001enq.1	+	4	1636	c.343C>G	c.(343-345)CTT>GTT	p.L115V	NBPF10_uc001emp.3_Intron	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	115	ANK 4.										0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CGCCTCGGCTCTTGTCCACGC	0.701													8	38					0	0	0	0
MUC1	4582	broad.mit.edu	37	1	155160217	155160217	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:155160217C>T	uc010pfj.1	-	4	1093	c.687G>A	c.(685-687)CTG>CTA	p.L229L	RAG1AP1_uc010pey.1_Intron|MUC1_uc001fhy.2_Silent_p.L59L|MUC1_uc001fhz.2_Silent_p.L59L|MUC1_uc010pfb.1_Silent_p.L59L|MUC1_uc010pfc.1_RNA|MUC1_uc009wph.2_Silent_p.L59L|MUC1_uc010pfd.1_Intron|MUC1_uc010pfe.1_RNA|MUC1_uc010pff.1_Intron|MUC1_uc009wpi.2_Silent_p.L59L|MUC1_uc010pfg.1_Intron|MUC1_uc010pfh.1_Silent_p.L205L|MUC1_uc010pfi.1_Silent_p.L205L|MUC1_uc010pfk.1_RNA|MUC1_uc010pfl.1_RNA|MUC1_uc001fin.2_Intron|MUC1_uc009wpk.2_Silent_p.L81L|MUC1_uc001fip.2_Intron|MUC1_uc009wqg.2_Silent_p.L90L|MUC1_uc009wpo.2_Silent_p.L96L|MUC1_uc009wps.2_Silent_p.L117L|MUC1_uc009wpt.2_Silent_p.L120L|MUC1_uc001fic.2_Silent_p.L108L|MUC1_uc009wpu.2_Intron|MUC1_uc009wpq.2_Silent_p.L122L|MUC1_uc009wpv.2_Intron|MUC1_uc001fim.2_Intron|MUC1_uc001fib.2_Intron|MUC1_uc009wpw.2_Intron|MUC1_uc001fie.2_Intron|MUC1_uc009wpr.2_Intron|MUC1_uc001fig.2_Intron|MUC1_uc001fif.2_Intron|MUC1_uc009wpx.2_Silent_p.L118L|MUC1_uc001fid.2_Silent_p.L109L|MUC1_uc009wpj.2_Intron|MUC1_uc001fij.2_Silent_p.L143L|MUC1_uc009wpy.2_Intron|MUC1_uc010pfm.1_Silent_p.L59L|MUC1_uc001fiq.2_Silent_p.L59L|MUC1_uc009wpz.2_Silent_p.L161L|MUC1_uc010pfn.1_Silent_p.L134L|MUC1_uc009wqa.2_Silent_p.L217L|MUC1_uc010pfo.1_Intron|MUC1_uc010pfp.1_Intron|MUC1_uc001fii.2_Intron|MUC1_uc001fih.2_Intron|MUC1_uc001fia.2_Silent_p.L134L|MUC1_uc009wqc.2_Silent_p.L131L|MUC1_uc009wqd.2_Silent_p.L155L|MUC1_uc009wqb.2_Silent_p.L59L|MUC1_uc010pfq.1_Silent_p.L131L|MUC1_uc010pfr.1_Intron|MUC1_uc001fit.2_Silent_p.L59L|MUC1_uc009wqe.2_Intron|MUC1_uc001fil.2_Intron|MUC1_uc009wpm.2_Silent_p.L152L|MUC1_uc009wpp.2_Intron|MUC1_uc010pfs.1_RNA|MUC1_uc001fik.2_Silent_p.L152L|MUC1_uc001fio.2_Intron|MUC1_uc009wqf.2_Intron|MUC1_uc009wpl.2_Intron|MUC1_uc009wpn.2_Silent_p.L143L|MUC1_uc001fis.1_Intron			P15941	MUC1_HUMAN	SubName: Full=Mucin 1, cell surface associated;	1134	Extracellular (Potential).|SEA.					apical plasma membrane|cell surface|cytoplasm|extracellular region|integral to plasma membrane|nucleus	protein binding			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;5.31e-10)|all cancers(21;2.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CTGAGATCGTCAGGTTATATC	0.552			T	IGH@	B-NHL								7	23					0	0	0	0
Unknown	0	broad.mit.edu	37	1	165678677	165678677	+	RNA	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:165678677G>C	uc001gdi.2	+	4		c.688G>C								Homo sapiens carbonic anhydrase XIV (CA14) pseudogene, mRNA (cDNA clone IMAGE:4643256).																		TTCATGGCTAGAAGGCTTCAG	0.483													5	15					0	0	0	0
CRB1	23418	broad.mit.edu	37	1	197396601	197396601	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:197396601T>C	uc001gtz.2	+	7	2281	c.2146T>C	c.(2146-2148)TTT>CTT	p.F716L	CRB1_uc010poz.1_Missense_Mutation_p.F647L|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.F604L|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.F197L|CRB1_uc001gub.1_Missense_Mutation_p.F365L	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	716	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GGCAGGCAGATTTGGCCAGGA	0.433													5	31					0	0	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204408140	204408140	+	Missense_Mutation	SNP	C	T	T	rs75201325		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:204408140C>T	uc001haw.2	-	24	3918	c.3439G>A	c.(3439-3441)GTG>ATG	p.V1147M	PIK3C2B_uc010pqv.1_Missense_Mutation_p.V1119M	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	1147	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GAGCCGGTCACCCCATGCTCC	0.592													9	19					0	0	0	0
NID1	4811	broad.mit.edu	37	1	236189239	236189239	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:236189239C>A	uc001hxo.2	-	8	2043	c.1941G>T	c.(1939-1941)AAG>AAT	p.K647N	NID1_uc009xgd.2_Missense_Mutation_p.K647N	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	647	Nidogen G2 beta-barrel.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	AGCGCAAGATCTTCTCCTCCT	0.577													39	174					5.59293e-11	6.0607e-11	1	0
PITRM1	10531	broad.mit.edu	37	10	3189404	3189404	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr10:3189404G>C	uc010qah.1	-	17	2012	c.1980C>G	c.(1978-1980)ATC>ATG	p.I660M	PITRM1_uc001igr.1_Missense_Mutation_p.I758M|PITRM1_uc001igs.1_5'Flank|PITRM1_uc001igt.1_Missense_Mutation_p.I758M|PITRM1_uc009xhv.1_Missense_Mutation_p.I324M|PITRM1_uc001igu.1_Missense_Mutation_p.I684M|PITRM1_uc010qai.1_Missense_Mutation_p.I729M|uc001igv.1_RNA			E7ES23	E7ES23_HUMAN	SubName: Full=cDNA FLJ54065, moderately similar to Mus musculus pitrilysin metallepetidase 1 (Pitrm1), mRNA;	660					proteolysis		metalloendopeptidase activity|zinc ion binding			pancreas(1)	1						GGATGGGTTTGATATCTGTCA	0.438													8	49					0	0	0	0
SFMBT2	57713	broad.mit.edu	37	10	7409703	7409703	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr10:7409703C>T	uc009xio.1	-	4	435	c.344G>A	c.(343-345)CGC>CAC	p.R115H	SFMBT2_uc001ijn.1_Missense_Mutation_p.R115H|SFMBT2_uc010qay.1_Missense_Mutation_p.R115H|SFMBT2_uc001ijo.1_Missense_Mutation_p.R115H	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	115	MBT 1.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						GTCGGCCCTGCGGTCCTCCCC	0.612													7	35					0	0	0	0
GDF2	2658	broad.mit.edu	37	10	48414496	48414496	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr10:48414496C>T	uc001jfa.1	-	2	535	c.372G>A	c.(370-372)GAG>GAA	p.E124E		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	124					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						AGGGGAAGTCCTCTGTGGCAG	0.507													3	21					0	0	0	0
JMJD1C	221037	broad.mit.edu	37	10	64979732	64979732	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr10:64979732G>C	uc001jmn.2	-	4	759	c.459C>G	c.(457-459)GAC>GAG	p.D153E	JMJD1C_uc001jml.2_Intron|JMJD1C_uc001jmm.2_5'UTR|JMJD1C_uc010qiq.1_5'UTR|JMJD1C_uc009xpi.2_5'UTR|JMJD1C_uc009xpj.1_Intron|JMJD1C_uc001jmp.1_Intron	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	153					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					GGTTTAGGCTGTCTATGTCGT	0.423													17	70					0	0	0	0
LRRTM3	347731	broad.mit.edu	37	10	68857399	68857399	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr10:68857399A>C	uc001jmz.1	+	3	2141	c.1591A>C	c.(1591-1593)AGT>CGT	p.S531R	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	531	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						GCCCACAATAAGTTACTGTGG	0.418													9	87					0	0	0	0
ENTPD7	57089	broad.mit.edu	37	10	101439180	101439180	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr10:101439180G>A	uc001kqa.3	+	4	532	c.354G>A	c.(352-354)ATG>ATA	p.M118I	ENTPD7_uc009xwl.2_Missense_Mutation_p.M120I	NM_020354	NP_065087	Q9NQZ7	ENTP7_HUMAN	ectonucleoside triphosphate diphosphohydrolase	118	Vesicular (Potential).					cytoplasmic vesicle membrane|integral to membrane	hydrolase activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;4.72e-10)|all cancers(201;3.75e-08)		TCAAACAGATGAGAGACCGCA	0.428													4	28					0	0	0	0
ITPRIP	85450	broad.mit.edu	37	10	106075039	106075039	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr10:106075039G>A	uc001kye.2	-	2	844	c.771C>T	c.(769-771)TGC>TGT	p.C257C	ITPRIP_uc001kyf.2_Silent_p.C257C|ITPRIP_uc001kyg.2_Silent_p.C257C	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	257						plasma membrane					0						TGGTCTTGCCGCAGATGCAGC	0.647													24	51					0	0	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587													6	33					0	0	0	0
COPB1	1315	broad.mit.edu	37	11	14490304	14490304	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:14490304G>A	uc001mli.2	-	16	2375	c.2068C>T	c.(2068-2070)CAG>TAG	p.Q690*	COPB1_uc001mlg.2_Nonsense_Mutation_p.Q690*|COPB1_uc001mlh.2_Nonsense_Mutation_p.Q690*	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	690					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						AAACTCAGCTGAAACTGATCT	0.423													18	149					0	0	0	0
ELP4	26610	broad.mit.edu	37	11	31805046	31805046	+	Missense_Mutation	SNP	G	A	A	rs3026403		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:31805046G>A	uc001mtb.2	+	10	1284	c.1249G>A	c.(1249-1251)GGA>AGA	p.G417R	ELP4_uc001mtc.2_3'UTR|ELP4_uc010rdz.1_Missense_Mutation_p.R464Q	NM_019040	NP_061913	Q96EB1	ELP4_HUMAN	elongation protein 4 homolog	417					histone acetylation|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|Elongator holoenzyme complex|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|prostate(1)	3	Lung SC(675;0.225)					CATGATGGCCGGAGGCAAGAA	0.498													3	74					0	0	0	0
OR4A15	81328	broad.mit.edu	37	11	55135812	55135812	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:55135812C>A	uc010rif.1	+	1	453	c.453C>A	c.(451-453)TAC>TAA	p.Y151*		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	151	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATGATCGATACATGGCCATCT	0.438													35	154					4.3181e-19	4.74832e-19	1	0
OR5AS1	219447	broad.mit.edu	37	11	55798369	55798369	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:55798369C>T	uc010riw.1	+	1	475	c.475C>T	c.(475-477)CAT>TAT	p.H159Y		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					ATCACTGGTCCATGTGTGCCT	0.438													66	107					0	0	0	0
C11orf10	746	broad.mit.edu	37	11	61558011	61558011	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:61558011C>T	uc001nsf.2	-	2	122	c.67G>A	c.(67-69)GTG>ATG	p.V23M	FEN1_uc001nsg.2_5'Flank	NM_014206	NP_055021	P61165	CK010_HUMAN	hypothetical protein LOC746	23	Helical; (Potential).					integral to membrane				breast(1)	1						AAAAGCACCACGGTCAGATGG	0.527													8	13					0	0	0	0
CCDC88B	283234	broad.mit.edu	37	11	64120247	64120247	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:64120247G>A	uc001nzy.2	+	20	3432	c.3388G>A	c.(3388-3390)GTG>ATG	p.V1130M	CCDC88B_uc009ypo.1_Missense_Mutation_p.V1127M|CCDC88B_uc001oaa.2_Missense_Mutation_p.V282M|CCDC88B_uc001oab.1_5'Flank|CCDC88B_uc001oac.2_5'Flank	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	1130	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GCGGGCCAGCGTGGAGGCACA	0.657													4	63					0	0	0	0
ATG2A	23130	broad.mit.edu	37	11	64678743	64678743	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:64678743C>T	uc001obx.2	-	10	1348	c.1233G>A	c.(1231-1233)AAG>AAA	p.K411K		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	411							protein binding			ovary(1)|central_nervous_system(1)	2						TGGGGGCCATCTTGCCTGAGG	0.632													28	46					0	0	0	0
NAALADL1	10004	broad.mit.edu	37	11	64825688	64825688	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:64825688G>A	uc001ocn.2	-	2	236	c.220C>T	c.(220-222)CCT>TCT	p.P74S	NAALADL1_uc010rnw.1_5'UTR	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	74	Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						TCATCCCGAGGGCTGGAGGCC	0.677													5	40					0	0	0	0
LRP5	4041	broad.mit.edu	37	11	68131338	68131338	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:68131338G>A	uc001ont.2	+	4	885	c.810G>A	c.(808-810)AAG>AAA	p.K270K	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	270	LDL-receptor class B 5.|Beta-propeller 1.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CTGGGGGGAAGAGGAAGGAGA	0.587													7	63					0	0	0	0
CTTN	2017	broad.mit.edu	37	11	70281261	70281261	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:70281261G>A	uc001opv.3	+	18	1852	c.1646G>A	c.(1645-1647)CGG>CAG	p.R549Q	CTTN_uc001opu.2_Intron|CTTN_uc001opw.3_Missense_Mutation_p.R512Q|CTTN_uc010rqm.1_Intron|CTTN_uc001opx.2_Missense_Mutation_p.R233Q	NM_005231	NP_005222	Q14247	SRC8_HUMAN	cortactin isoform a	549	SH3.					cell cortex|cytoskeleton|lamellipodium|ruffle|soluble fraction	protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(2;4.34e-41)|LUSC - Lung squamous cell carcinoma(11;1.51e-13)|STAD - Stomach adenocarcinoma(18;0.0513)	Lung(977;0.0234)|LUSC - Lung squamous cell carcinoma(976;0.133)		GTGGAGCTGCGGCAGTAGGGC	0.587													11	36					0	0	0	0
MAP6	4135	broad.mit.edu	37	11	75299192	75299192	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:75299192G>A	uc001owu.2	-	4	1419	c.1354C>T	c.(1354-1356)CAA>TAA	p.Q452*		NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	452						Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					ACAGGACCTTGAGTCTTACTT	0.537													16	53					0	0	0	0
INTS4	92105	broad.mit.edu	37	11	77590009	77590009	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:77590009G>C	uc001oys.2	-	23	2906	c.2878C>G	c.(2878-2880)CCT>GCT	p.P960A	C11orf67_uc001oyp.2_Intron|C11orf67_uc001oyr.1_Intron|INTS4_uc001oyt.2_RNA	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	960					snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			CGCCGTGCAGGTTTGGGCATT	0.527													8	76					0	0	0	0
CCDC89	220388	broad.mit.edu	37	11	85396236	85396236	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr11:85396236C>T	uc001pau.1	-	1	1085	c.938G>A	c.(937-939)CGG>CAG	p.R313Q		NM_152723	NP_689936	Q8N998	CCD89_HUMAN	coiled-coil domain containing 89	313	Potential.					cytoplasm|nucleus					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				TTGCTCAAACCGCTCCAGCGC	0.512													14	51					0	0	0	0
EFCAB4B	84766	broad.mit.edu	37	12	3757747	3757747	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:3757747C>T	uc001qmj.2	-	11	1651	c.1079G>A	c.(1078-1080)CGT>CAT	p.R360H	EFCAB4B_uc010sen.1_Missense_Mutation_p.R360H|EFCAB4B_uc010seo.1_Missense_Mutation_p.R360H|EFCAB4B_uc001qmi.1_RNA	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	360	Potential.				activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			GGCCTTCTCACGCTGTAGACT	0.622													5	36					0	0	0	0
VWF	7450	broad.mit.edu	37	12	6135131	6135131	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:6135131C>T	uc001qnn.1	-	23	3299	c.3049G>A	c.(3049-3051)GAC>AAC	p.D1017N	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1017	VWFD 3.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TCCACAGGGTCTTCCTCCACT	0.527													13	63					0	0	0	0
CHD4	1108	broad.mit.edu	37	12	6688057	6688057	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:6688057C>T	uc001qpo.2	-	34	5100	c.4936G>A	c.(4936-4938)GAA>AAA	p.E1646K	CHD4_uc001qpn.2_Missense_Mutation_p.E1639K|CHD4_uc001qpp.2_Missense_Mutation_p.E1671K|uc001qpq.1_Intron	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1646	Required for interaction with PCNT.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						GCTGACTTTTCCTCCACCTTC	0.413													6	24					0	0	0	0
CHD4	1108	broad.mit.edu	37	12	6690555	6690555	+	Splice_Site	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:6690555C>G	uc001qpo.2	-	32	4846	c.4682_splice	c.e32-1	p.E1561_splice	CHD4_uc001qpn.2_Splice_Site_p.E1554_splice|CHD4_uc001qpp.2_Splice_Site_p.E1586_splice|uc001qpq.1_Intron	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4						chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						ATCCCATCTTCTGCAGAACAA	0.403													5	67					0	0	0	0
TPI1	7167	broad.mit.edu	37	12	6979473	6979473	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:6979473G>A	uc001qrk.2	+	7	714	c.676G>A	c.(676-678)GAT>AAT	p.D226N	TPI1_uc010sfo.1_Missense_Mutation_p.D144N	NM_000365	NP_000356	P60174	TPIS_HUMAN	triosephosphate isomerase 1 isoform 1	226					fatty acid biosynthetic process|gluconeogenesis|glycolysis|pentose-phosphate shunt	cytosol	triose-phosphate isomerase activity				0						CAGCCAGCCTGATGTGGATGG	0.572											OREG0021638	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	24					0	0	0	0
PZP	5858	broad.mit.edu	37	12	9349219	9349219	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:9349219C>T	uc001qvl.2	-	9	959	c.930G>A	c.(928-930)ACG>ACA	p.T310T	PZP_uc009zgl.2_Silent_p.T179T	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TTTCAAAGCCCGTATTTGTAA	0.393													13	70					0	0	0	0
DDX12	440081	broad.mit.edu	37	12	9574030	9574030	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:9574030T>G	uc010sgs.1	-	20	2201	c.2006A>C	c.(2005-2007)AAC>ACC	p.N669T	DDX12_uc001qvx.3_5'Flank|DDX12_uc001qvy.1_5'Flank	NM_004400	NP_004391			DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12												0						TAGCGGCTGGTTGGAGACCCC	0.597													6	32					0	0	0	0
BCL2L14	79370	broad.mit.edu	37	12	12232347	12232347	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:12232347C>G	uc001rac.2	+	2	309	c.108C>G	c.(106-108)TTC>TTG	p.F36L	ETV6_uc001raa.1_Intron|BCL2L14_uc001raf.1_RNA|BCL2L14_uc001rad.2_Missense_Mutation_p.F36L|BCL2L14_uc001rae.2_Missense_Mutation_p.F36L	NM_138723	NP_620049	Q9BZR8	B2L14_HUMAN	BCL2-like 14 isoform 1	36					apoptosis|regulation of apoptosis	cytosol|endomembrane system|intracellular organelle|membrane	protein binding			skin(1)	1		Prostate(47;0.0872)		BRCA - Breast invasive adenocarcinoma(232;0.154)		ATCATGTCTTCAAGAGCACCC	0.493													13	38					0	0	0	0
PPFIBP1	8496	broad.mit.edu	37	12	27841992	27841992	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:27841992G>A	uc001ric.1	+	26	2936	c.2559G>A	c.(2557-2559)TTG>TTA	p.L853L	PPFIBP1_uc010sjr.1_Silent_p.L684L|PPFIBP1_uc001rib.1_Silent_p.L847L|PPFIBP1_uc001ria.2_Silent_p.L822L|PPFIBP1_uc001rid.1_Silent_p.L700L|PPFIBP1_uc001rif.1_Silent_p.L360L	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	853	SAM 3.				cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					CTCAGTTATTGAACATCCCAC	0.408													10	68					0	0	0	0
Unknown	0	broad.mit.edu	37	12	31301769	31301769	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:31301769C>G	uc010sjy.1	-	10	1183	c.1183G>C	c.(1183-1185)GAT>CAT	p.D395H						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		AACTCTGGATCAAATATGTCT	0.363													2	3					0	0	0	0
ANO6	196527	broad.mit.edu	37	12	45810577	45810577	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:45810577G>A	uc001roo.2	+	17	2442	c.2107G>A	c.(2107-2109)GCA>ACA	p.A703T	ANO6_uc010sld.1_Missense_Mutation_p.A703T|ANO6_uc010sle.1_Missense_Mutation_p.A703T|ANO6_uc010slf.1_Missense_Mutation_p.A724T|ANO6_uc010slg.1_Missense_Mutation_p.A685T	NM_001025356	NP_001020527	Q4KMQ2	ANO6_HUMAN	anoctamin 6 isoform a	703	Cytoplasmic (Potential).				activation of blood coagulation via clotting cascade|phosphatidylserine exposure on blood platelet	chloride channel complex|plasma membrane	chloride channel activity			ovary(1)|kidney(1)	2						AAGAGTGGACGCATGGAAACT	0.483													9	28					0	0	0	0
COL2A1	1280	broad.mit.edu	37	12	48367873	48367873	+	Missense_Mutation	SNP	G	A	A	rs121912886		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:48367873G>A	uc001rqu.2	-	53	4497	c.4316C>T	c.(4315-4317)ACG>ATG	p.T1439M	COL2A1_uc001rqt.2_Missense_Mutation_p.T220M|COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.T1370M	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	1439	Fibrillar collagen NC1.		T -> M (in SEDC).		axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	CCCACTCACCGTGCAGCCATC	0.617													7	52					0	0	0	0
LIMA1	51474	broad.mit.edu	37	12	50616056	50616056	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:50616056G>A	uc001rwj.3	-	4	552	c.378C>T	c.(376-378)CCC>CCT	p.P126P	LIMA1_uc001rwh.3_5'UTR|LIMA1_uc001rwi.3_5'UTR|LIMA1_uc001rwk.3_Silent_p.P126P|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	126					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						GTCTAGATCTGGGGTGGATTT	0.512													11	60					0	0	0	0
KRT79	338785	broad.mit.edu	37	12	53227934	53227934	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:53227934C>T	uc001sbb.2	-	1	144	c.111G>A	c.(109-111)ACG>ACA	p.T37T		NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	37	Head.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						TCCGAGACACCGTCACTGAGC	0.637													5	53					0	0	0	0
NAV3	89795	broad.mit.edu	37	12	78531084	78531084	+	Silent	SNP	T	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:78531084T>G	uc001syp.2	+	19	4742	c.4569T>G	c.(4567-4569)TCT>TCG	p.S1523S	NAV3_uc001syo.2_Silent_p.S1523S|NAV3_uc010sub.1_Silent_p.S1009S|NAV3_uc009zsf.2_Silent_p.S354S	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1523	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GTGCCACTTCTCTGGAGGAAA	0.512										HNSCC(70;0.22)			8	48					0	0	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85554449	85554449	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:85554449A>C	uc001tac.2	+	24	4890	c.4779A>C	c.(4777-4779)AAA>AAC	p.K1593N		NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1593										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		CTCTTCCAAAATCACCAAAGA	0.338													5	58					0	0	0	0
VEZT	55591	broad.mit.edu	37	12	95694420	95694420	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:95694420G>C	uc001tdz.2	+	12	2416	c.2311G>C	c.(2311-2313)GAA>CAA	p.E771Q	VEZT_uc009ztb.1_RNA|VEZT_uc009ztc.1_Missense_Mutation_p.E136Q|VEZT_uc001tdy.2_RNA	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	771						acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						AATAATAGAAGAAAATAAAAA	0.383													4	23					0	0	0	0
NEDD1	121441	broad.mit.edu	37	12	97328772	97328772	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:97328772T>C	uc001teu.3	+	7	847	c.508T>C	c.(508-510)TAC>CAC	p.Y170H	NEDD1_uc001tev.3_Missense_Mutation_p.Y170H|NEDD1_uc010svc.1_Missense_Mutation_p.Y81H|NEDD1_uc001tew.2_Missense_Mutation_p.Y177H|NEDD1_uc001tex.2_Missense_Mutation_p.Y81H	NM_152905	NP_690869	Q8NHV4	NEDD1_HUMAN	neural precursor cell expressed, developmentally	170	WD 5.			Y -> C (in Ref. 1; BAC04099).	cell division|G2/M transition of mitotic cell cycle|mitosis	cytosol					0						GCACTTGAAGTACTCCTTGTT	0.328													13	75					0	0	0	0
UBE3B	89910	broad.mit.edu	37	12	109972546	109972546	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:109972546C>T	uc001top.2	+	28	3769	c.3166C>T	c.(3166-3168)CGC>TGC	p.R1056C	UBE3B_uc001toq.2_Missense_Mutation_p.R1056C|UBE3B_uc001tos.2_Missense_Mutation_p.R483C|UBE3B_uc001tot.2_Missense_Mutation_p.R174C|UBE3B_uc010sxp.1_3'UTR	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	1056	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						CGAGAAGCTGCGCTACGCCAT	0.642													9	51					0	0	0	0
RPLP0	6175	broad.mit.edu	37	12	120636693	120636693	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:120636693G>A	uc001txp.2	-	5	666	c.429C>T	c.(427-429)ATC>ATT	p.I143I	RPLP0_uc001txq.2_Silent_p.I143I|RPLP0_uc001txr.2_Silent_p.I143I|uc001txs.1_5'Flank	NM_053275	NP_444505	P05388	RLA0_HUMAN	ribosomal protein P0	143					endocrine pancreas development|interspecies interaction between organisms|ribosome biogenesis|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleus	protein binding|RNA binding|structural constituent of ribosome			ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTTTAGTGGTGATACCTAAAG	0.552													5	32					0	0	0	0
GPR133	283383	broad.mit.edu	37	12	131498863	131498863	+	Missense_Mutation	SNP	C	T	T	rs149266247	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:131498863C>T	uc001uit.3	+	13	2010	c.1451C>T	c.(1450-1452)ACG>ATG	p.T484M	GPR133_uc010tbm.1_Missense_Mutation_p.T516M	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	484	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		CCACTCATTACGGTCCACCTC	0.587													10	47					0	0	0	0
PCDH17	27253	broad.mit.edu	37	13	58208055	58208055	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr13:58208055G>T	uc001vhq.1	+	1	2267	c.1375G>T	c.(1375-1377)GCG>TCG	p.A459S	PCDH17_uc010aec.1_Missense_Mutation_p.A459S	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	459	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CAAGTCGTTCGCGATCAAGAT	0.607													3	19					2.56e-06	2.67677e-06	1	0
GPR18	2841	broad.mit.edu	37	13	99907960	99907960	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr13:99907960G>A	uc001voe.3	-	3	668	c.167C>T	c.(166-168)ACG>ATG	p.T56M	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron|GPR18_uc010afv.2_Missense_Mutation_p.T56M	NM_005292	NP_005283	Q14330	GPR18_HUMAN	G protein-coupled receptor 18	56	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Glycine(DB00145)	GATGGTTACCGTGGTTCTCTT	0.348													28	56					0	0	0	0
PCID2	55795	broad.mit.edu	37	13	113832567	113832567	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr13:113832567T>A	uc010tju.1	-	14	1226	c.1145A>T	c.(1144-1146)CAG>CTG	p.Q382L	PCID2_uc001vtb.2_Missense_Mutation_p.Q215L|PCID2_uc010tjv.1_Missense_Mutation_p.Q382L|PCID2_uc010tjw.1_Missense_Mutation_p.Q382L|PCID2_uc001vte.2_Missense_Mutation_p.Q275L|PCID2_uc001vtd.2_Missense_Mutation_p.Q275L|PCID2_uc001vtf.2_Missense_Mutation_p.Q275L	NM_001127203	NP_001120675	Q5JVF3	PCID2_HUMAN	PCI domain containing 2	382	PCI.				negative regulation of apoptosis|negative regulation of cysteine-type endopeptidase activity|positive regulation of mitotic cell cycle spindle assembly checkpoint|positive regulation of transcription, DNA-dependent|regulation of mRNA stability|spleen development		protein binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.216)|all_epithelial(44;0.234)	all cancers(43;0.104)			CACCAGCTTCTGATGCTGATG	0.522													25	26					0	0	0	0
DHRS4	10901	broad.mit.edu	37	14	24424278	24424278	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr14:24424278G>T	uc001wla.2	+	2	196	c.163G>T	c.(163-165)GAC>TAC	p.D55Y	C14orf167_uc001wkz.2_5'Flank|C14orf167_uc001wky.2_5'Flank|C14orf167_uc001wkx.2_5'Flank|C14orf167_uc010akx.1_RNA|DHRS4_uc010aky.2_Missense_Mutation_p.D55Y|DHRS4_uc001wlb.2_Missense_Mutation_p.D55Y|DHRS4_uc010akz.2_Missense_Mutation_p.D55Y|DHRS4_uc001wlc.3_Missense_Mutation_p.D55Y|DHRS4L2_uc001wld.3_Missense_Mutation_p.D55Y|DHRS4L2_uc001wle.3_Missense_Mutation_p.D55Y	NM_021004	NP_066284	Q9BTZ2	DHRS4_HUMAN	peroxisomal short-chain alcohol dehydrogenase	55	NADP (By similarity).					mitochondrion|nuclear membrane|peroxisome	binding|carbonyl reductase (NADPH) activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.00962)	Vitamin A(DB00162)	TTTGGCCCAGGACGGGGCCCA	0.557													15	81					8.60227e-14	9.42455e-14	1	0
CPNE6	9362	broad.mit.edu	37	14	24546188	24546188	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr14:24546188G>A	uc001wll.2	+	14	1365	c.1266G>A	c.(1264-1266)CCG>CCA	p.P422P	CPNE6_uc010tnv.1_Silent_p.P477P|CPNE6_uc001wlm.2_Silent_p.P247P|CPNE6_uc001wln.2_Silent_p.P90P	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	422	VWFA.				lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		TGGCTGAGCCGGCCCAGCGGG	0.637													5	24					0	0	0	0
SDCCAG1	9147	broad.mit.edu	37	14	50262630	50262630	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr14:50262630G>C	uc001wxc.2	-	26	2566	c.2498C>G	c.(2497-2499)TCA>TGA	p.S833*	SDCCAG1_uc010anj.1_Nonsense_Mutation_p.S833*|SDCCAG1_uc001wwz.2_Nonsense_Mutation_p.S33*|SDCCAG1_uc001wxa.2_Nonsense_Mutation_p.S113*|SDCCAG1_uc010tqi.1_Nonsense_Mutation_p.S812*|SDCCAG1_uc001wxe.2_Nonsense_Mutation_p.S791*|SDCCAG1_uc001wxd.1_Nonsense_Mutation_p.S238*	NM_004713	NP_004704	O60524	NEMF_HUMAN	serologically defined colon cancer antigen 1	833						cytoplasm|nucleus					0	all_epithelial(31;0.000822)|Breast(41;0.0117)	all_lung(585;1.02e-05)		OV - Ovarian serous cystadenocarcinoma(311;5.99e-34)		TAAATCTCCTGAGTCACTTGG	0.338													7	45					0	0	0	0
C14orf101	54916	broad.mit.edu	37	14	57101623	57101623	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr14:57101623T>G	uc001xcm.2	+	14	1853	c.1731T>G	c.(1729-1731)GAT>GAG	p.D577E	C14orf101_uc001xcj.2_RNA|C14orf101_uc001xcl.1_RNA|C14orf101_uc001xcn.2_RNA|C14orf101_uc010trf.1_Missense_Mutation_p.D110E|C14orf101_uc001xco.2_Missense_Mutation_p.D110E	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916	577						integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		ACAGGTTTGATCCATCTTCTT	0.294													20	62					0	0	0	0
NEK9	91754	broad.mit.edu	37	14	75567725	75567725	+	Missense_Mutation	SNP	C	T	T	rs151072111		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr14:75567725C>T	uc001xrl.2	-	16	2126	c.1972G>A	c.(1972-1974)GGT>AGT	p.G658S	NEK9_uc001xrk.2_Missense_Mutation_p.G158S	NM_033116	NP_149107	Q8TD19	NEK9_HUMAN	NIMA-related kinase 9	658	RCC1 5.				cell division|mitosis	mitochondrion|nucleus	ATP binding|metal ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(2)|stomach(2)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00718)		AACTCATCACCGCAGGAGACC	0.517													21	33					0	0	0	0
ISM2	145501	broad.mit.edu	37	14	77942421	77942421	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr14:77942421C>G	uc001xtz.2	-	7	1307	c.1233G>C	c.(1231-1233)AAG>AAC	p.K411N	ISM2_uc001xua.2_3'UTR|ISM2_uc001xty.2_Missense_Mutation_p.K323N|ISM2_uc010tvl.1_Missense_Mutation_p.K330N	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	411	AMOP.					extracellular region				skin(1)	1						GGAAGTCGCTCTTGCAGTTCA	0.612													9	46					0	0	0	0
SNORD113-7	767567	broad.mit.edu	37	14	101407483	101407483	+	RNA	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr14:101407483G>A	uc001yio.2	+	1		c.21G>A				NR_003235				Homo sapiens small nucleolar RNA, C/D box 113-7 (SNORD113-7), non-coding RNA.												0						ATGAGTATGCGTGGGGCATCT	0.363													18	48					0	0	0	0
TRPM1	4308	broad.mit.edu	37	15	31295039	31295039	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr15:31295039G>A	uc001zfm.2	-	27	3926	c.3798C>T	c.(3796-3798)AGC>AGT	p.S1266S	TRPM1_uc010azy.2_Silent_p.S1173S|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	1266	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		AGCCATCAGCGCTATTGATGC	0.488													13	56					0	0	0	0
ZNF592	9640	broad.mit.edu	37	15	85327115	85327115	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr15:85327115G>C	uc002bld.2	+	4	1545	c.1209G>C	c.(1207-1209)AAG>AAC	p.K403N	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	403					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			ATCCAAGTAAGTCCCCTGTTG	0.532													6	33					0	0	0	0
NTRK3	4916	broad.mit.edu	37	15	88483978	88483978	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr15:88483978T>C	uc002bme.1	-	14	1754	c.1592A>G	c.(1591-1593)CAG>CGG	p.Q531R	NTRK3_uc002bmh.2_Missense_Mutation_p.Q523R|NTRK3_uc002bmf.1_Missense_Mutation_p.Q531R|NTRK3_uc010upl.1_Missense_Mutation_p.Q433R|NTRK3_uc010bnh.1_Missense_Mutation_p.Q523R	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	531	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			CTTAATGTGCTGCACATCTGT	0.537			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			20	78					0	0	0	0
HAPLN3	145864	broad.mit.edu	37	15	89424833	89424833	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr15:89424833C>T	uc002bnc.2	-	3	376	c.248G>A	c.(247-249)CGT>CAT	p.R83H	HAPLN3_uc002bne.2_RNA|HAPLN3_uc002bnd.2_Missense_Mutation_p.R145H	NM_178232	NP_839946	Q96S86	HPLN3_HUMAN	hyaluronan and proteoglycan link protein 3	83	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	Lung NSC(78;0.0392)|all_lung(78;0.077)					GACACGCACACGCCGCGGGGA	0.657													20	58					0	0	0	0
SYNM	23336	broad.mit.edu	37	15	99672905	99672905	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr15:99672905C>T	uc002bup.2	+	6	4460	c.4340C>T	c.(4339-4341)ACG>ATG	p.T1447M	SYNM_uc002buo.2_Intron|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	1447	Tail.|Interaction with DMD and UTRN.|Interaction with TLN1 and VCL.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						AGCAGCAGAACGCTAAGGCAC	0.542													33	114					0	0	0	0
MEF2A	4205	broad.mit.edu	37	15	100250868	100250868	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr15:100250868G>T	uc010urw.1	+	10	1404	c.1045G>T	c.(1045-1047)GCC>TCC	p.A349S	MEF2A_uc010urv.1_Missense_Mutation_p.A279S|MEF2A_uc010bos.2_Missense_Mutation_p.A339S|MEF2A_uc002bvf.2_Missense_Mutation_p.A341S|MEF2A_uc002bve.2_Missense_Mutation_p.A347S|MEF2A_uc002bvg.2_Missense_Mutation_p.A339S|MEF2A_uc002bvi.2_Missense_Mutation_p.A339S|MEF2A_uc010bot.2_Missense_Mutation_p.A271S	NM_005587	NP_005578	Q02078	MEF2A_HUMAN	myocyte enhancer factor 2A isoform 1	349					apoptosis|BMK cascade|cardiac conduction|cellular response to calcium ion|dendrite morphogenesis|innate immune response|mitochondrial genome maintenance|mitochondrion distribution|muscle organ development|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|ventricular cardiac myofibril development	nuclear chromatin|nucleoplasm	activating transcription factor binding|histone acetyltransferase binding|histone deacetylase binding|protein heterodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|SMAD binding			ovary(1)	1	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00085)			TGACCTGTCAGCCCTTCAAGG	0.527													4	20					0.00909568	0.0092509	1	0
WASH3P	374666	broad.mit.edu	37	15	102515344	102515344	+	Missense_Mutation	SNP	A	C	C	rs141089280	by1000genomes	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr15:102515344A>C	uc002cdi.2	+	9	1988	c.568A>C	c.(568-570)AAG>CAG	p.K190Q	WASH3P_uc002cdl.2_Missense_Mutation_p.K190Q|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.K190Q|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						GCTGGAGAAGAAGCAGCAGAA	0.662													2	11					0	0	0	0
MSLN	10232	broad.mit.edu	37	16	818647	818647	+	Splice_Site	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:818647G>T	uc002cjw.1	+	17	1859	c.1808_splice	c.e17-1	p.E603_splice	MSLN_uc002cjt.1_Splice_Site_p.E595_splice|MSLN_uc002cju.1_Splice_Site_p.E595_splice|MSLN_uc010brd.1_Splice_Site_p.E594_splice|MSLN_uc002cjv.1_Intron|MSLN_uc002cjx.1_Splice_Site_p.E595_splice|MSLN_uc002cjy.1_Missense_Mutation_p.R287I|MIR662_hsa-mir-662|MI0003670_5'Flank	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein						cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				TCTCTCTGTAGAGGCCCTCTC	0.697													12	52					4.3838e-07	4.61616e-07	1	0
GRIN2A	2903	broad.mit.edu	37	16	9934948	9934948	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:9934948C>T	uc002czo.3	-	6	1890	c.1342G>A	c.(1342-1344)GAG>AAG	p.E448K	GRIN2A_uc010uym.1_Missense_Mutation_p.E448K|GRIN2A_uc010uyn.1_Missense_Mutation_p.E291K|GRIN2A_uc002czr.3_Missense_Mutation_p.E448K	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	448	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTCATCCCCTCATTGGTTGAA	0.254													14	60					0	0	0	0
SH2B1	25970	broad.mit.edu	37	16	28883644	28883644	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:28883644C>T	uc002dri.2	+	9	2086	c.1647C>T	c.(1645-1647)CAC>CAT	p.H549H	uc010vct.1_Intron|SH2B1_uc010vdc.1_Silent_p.H239H|SH2B1_uc002drj.2_Silent_p.H549H|SH2B1_uc002drk.2_Silent_p.H549H|SH2B1_uc002drl.2_Silent_p.H549H|SH2B1_uc010vdd.1_Silent_p.H213H|SH2B1_uc010vde.1_Silent_p.H549H|SH2B1_uc002drm.2_Silent_p.H549H	NM_001145795	NP_001139267	Q9NRF2	SH2B1_HUMAN	SH2B adaptor protein 1 isoform 1	549	Interaction with JAK2 (low-affinity binding; independent of JAK2 phosphorylation) (By similarity).|SH2.				blood coagulation|intracellular signal transduction	cytosol|membrane|nucleus	signal transducer activity			ovary(2)	2						CTGGCTCCCACGGTGTCTTCC	0.622													10	37					0	0	0	0
NKD1	85407	broad.mit.edu	37	16	50583366	50583366	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:50583366G>A	uc002egg.1	+	3	316	c.92G>A	c.(91-93)CGG>CAG	p.R31Q		NM_033119	NP_149110	Q969G9	NKD1_HUMAN	naked cuticle homolog 1	31					Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding				0		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		GCCTGGGCTCGGAAGGGCATC	0.692													6	21					0	0	0	0
CNGB1	1258	broad.mit.edu	37	16	58001097	58001097	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:58001097C>G	uc002emt.2	-	2	159	c.94G>C	c.(94-96)GAG>CAG	p.E32Q	CNGB1_uc010cdh.2_Missense_Mutation_p.E32Q|CNGB1_uc002emu.2_Missense_Mutation_p.E32Q	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	32	Glu-rich.				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GCCTCCATCTCTGGCTCTGGT	0.637													10	45					0	0	0	0
CDH11	1009	broad.mit.edu	37	16	65032724	65032724	+	Silent	SNP	A	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:65032724A>G	uc002eoi.2	-	4	698	c.264T>C	c.(262-264)ATT>ATC	p.I88I	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Silent_p.I88I|CDH11_uc010vin.1_5'UTR|CDH11_uc010vio.1_Silent_p.I88I	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	88	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		GAATGTATTTAATGTTCCCAT	0.408			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			7	36					0	0	0	0
NFATC3	4775	broad.mit.edu	37	16	68200760	68200760	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:68200760G>C	uc002evo.1	+	5	1826	c.1616G>C	c.(1615-1617)GGT>GCT	p.G539A	NFATC3_uc010vkl.1_Missense_Mutation_p.G60A|NFATC3_uc010vkm.1_Missense_Mutation_p.G60A|NFATC3_uc010vkn.1_Missense_Mutation_p.G60A|NFATC3_uc010vko.1_Missense_Mutation_p.G60A|NFATC3_uc010vkp.1_Missense_Mutation_p.G60A|NFATC3_uc010vkq.1_Missense_Mutation_p.G60A|NFATC3_uc002evl.2_Missense_Mutation_p.G60A|NFATC3_uc002evk.2_Missense_Mutation_p.G539A|NFATC3_uc002evm.1_Missense_Mutation_p.G539A|NFATC3_uc002evn.1_Missense_Mutation_p.G539A|NFATC3_uc010vkr.1_Missense_Mutation_p.G60A|NFATC3_uc010vks.1_Missense_Mutation_p.G60A|NFATC3_uc010vkt.1_Missense_Mutation_p.G60A|NFATC3_uc010vku.1_Missense_Mutation_p.G60A|NFATC3_uc010vkv.1_Missense_Mutation_p.G60A|NFATC3_uc010vkw.1_Missense_Mutation_p.G60A|NFATC3_uc010vkx.1_Missense_Mutation_p.G60A|NFATC3_uc010vky.1_Missense_Mutation_p.G60A|NFATC3_uc010vkz.1_Missense_Mutation_p.G60A|NFATC3_uc010vla.1_Missense_Mutation_p.G60A|NFATC3_uc010vlb.1_Missense_Mutation_p.G60A|NFATC3_uc010vlc.1_Missense_Mutation_p.G60A	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	539	RHD.				inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		GATTGTGCAGGTATTTTGAAA	0.299													7	19					0	0	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77325197	77325197	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:77325197A>C	uc002ffc.3	-	21	3787	c.3368T>G	c.(3367-3369)ATG>AGG	p.M1123R		NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1123	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TCCAGCTACCATGTTGTACAC	0.502													16	86					0	0	0	0
WFDC1	58189	broad.mit.edu	37	16	84353096	84353096	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:84353096G>A	uc002fhw.2	+	4	658	c.481G>A	c.(481-483)GAG>AAG	p.E161K	WFDC1_uc002fhv.2_Missense_Mutation_p.E161K	NM_021197	NP_067020	Q9HC57	WFDC1_HUMAN	WAP four-disulfide core domain 1 precursor	161					negative regulation of cell growth	extracellular space	serine-type endopeptidase inhibitor activity			breast(1)	1						CTCGGGCTATGAGTGCCACAT	0.667													13	36					0	0	0	0
FOXL1	2300	broad.mit.edu	37	16	86612542	86612542	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:86612542G>A	uc002fjr.2	+	1	428	c.213G>A	c.(211-213)ACG>ACA	p.T71T		NM_005250	NP_005241	Q12952	FOXL1_HUMAN	forkhead box L1	71	Fork-head.				brain development|camera-type eye development|cartilage development|embryo development|forelimb morphogenesis|heart development|organ morphogenesis|pattern specification process|proteoglycan biosynthetic process|regulation of sequence-specific DNA binding transcription factor activity|regulation of Wnt receptor signaling pathway|visceral mesoderm-endoderm interaction involved in midgut development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1						AGAGGGTCACGCTCAACGGCA	0.642													27	72					0	0	0	0
Unknown	0	broad.mit.edu	37	16	88620365	88620365	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:88620365G>A	uc010vox.1	-	2	265	c.265C>T	c.(265-267)CGT>TGT	p.R89C						RecName: Full=Putative uncharacterized protein C16orf85;																		GAGCTGGGACGGACGCCCGCA	0.657													15	84					0	0	0	0
DEF8	54849	broad.mit.edu	37	16	90016035	90016035	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:90016035G>A	uc002fpn.1	+	2	251	c.162G>A	c.(160-162)ACG>ACA	p.T54T	DEF8_uc002fpl.2_Intron|DEF8_uc002fpm.2_Intron|DEF8_uc002fpo.1_Intron|DEF8_uc002fpp.1_Intron|DEF8_uc010vpq.1_Intron|DEF8_uc010vpr.1_Intron	NM_207514	NP_997397	Q6ZN54	DEFI8_HUMAN	differentially expressed in FDCP 8 isoform 1	54					intracellular signal transduction		zinc ion binding			central_nervous_system(1)	1		all_cancers(9;7.59e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.0019)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0274)		CGGGCAGGACGCGGGAGGCCA	0.677													10	48					0	0	0	0
ZNF232	7775	broad.mit.edu	37	17	5009153	5009153	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr17:5009153C>T	uc002gas.2	-	5	1974	c.1220G>A	c.(1219-1221)CGG>CAG	p.R407Q	ZNF232_uc002gar.1_Missense_Mutation_p.R425Q|ZNF232_uc002gat.2_Missense_Mutation_p.R434Q	NM_014519	NP_055334	Q9UNY5	ZN232_HUMAN	zinc finger protein 232	407	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						ATGAACTCTCCGATGTCTAAT	0.433													16	67					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	T	T	rs11540652		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr17:7577538C>T	uc002gim.2	-	7	937	c.743G>A	c.(742-744)CGG>CAG	p.R248Q	TP53_uc002gig.1_Missense_Mutation_p.R248Q|TP53_uc002gih.2_Missense_Mutation_p.R248Q|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R116Q|TP53_uc010cng.1_Missense_Mutation_p.R116Q|TP53_uc002gii.1_Missense_Mutation_p.R116Q|TP53_uc010cnh.1_Missense_Mutation_p.R248Q|TP53_uc010cni.1_Missense_Mutation_p.R248Q|TP53_uc002gij.2_Missense_Mutation_p.R248Q|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R155Q|TP53_uc002gio.2_Missense_Mutation_p.R116Q	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	248	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		R -> W (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> L (in sporadic cancers; somatic mutation).|NR -> KW (in sporadic cancers; somatic mutation).|R -> C (in a sporadic cancer; somatic mutation).|NR -> IP (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R248Q(523)|p.R248W(443)|p.R248L(63)|p.R248P(12)|p.R248G(11)|p.R248R(10)|p.0?(7)|p.R155Q(4)|p.N247_R248delNR(2)|p.N247_R248>KW(2)|p.M246_P250delMNRRP(2)|p.R248fs*97(2)|p.R248_P250delRRP(1)|p.N247_R249delNRR(1)|p.N247_P250delNRRP(1)|p.R249fs*96(1)|p.R248C(1)|p.G245fs*14(1)|p.N247_R248>IP(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GATGGGCCTCCGGTTCATGCC	0.572	R248Q(KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(HS683_CENTRAL_NERVOUS_SYSTEM)|R248Q(NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(HCC1143_BREAST)|R248Q(BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SKUT1_SOFT_TISSUE)|R248Q(HSC4_UPPER_AERODIGESTIVE_TRACT)|R248Q(HEC1A_ENDOMETRIUM)|R248Q(SF295_CENTRAL_NERVOUS_SYSTEM)|R248Q(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NCIN87_STOMACH)|R248Q(P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(RT112_URINARY_TRACT)|R248Q(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(PANC0203_PANCREAS)|R248Q(EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NIHOVCAR3_OVARY)|R248Q(CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SW1463_LARGE_INTESTINE)|R248Q(HCC70_BREAST)|R248Q(KYSE150_OESOPHAGUS)|R248Q(NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NCIH211_LUNG)|R248Q(KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(PC14_LUNG)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			12	16					0	0	0	0
FAM27L	284123	broad.mit.edu	37	17	21825525	21825525	+	RNA	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr17:21825525G>A	uc002gyz.2	+	1		c.156G>A				NR_028336				Homo sapiens family with sequence similarity 27-like, mRNA (cDNA clone MGC:35151 IMAGE:5169482), complete cds.												0				UCEC - Uterine corpus endometrioid carcinoma (53;0.11)|BRCA - Breast invasive adenocarcinoma(1;0.00463)		ggcagagtccggggaagcagc	0													12	40					0	0	0	0
RAB34	83871	broad.mit.edu	37	17	27045165	27045165	+	5'Flank	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr17:27045165G>C	uc002hce.2	-						RAB34_uc002hcg.2_5'Flank|RAB34_uc002hcf.2_5'Flank|RAB34_uc010was.1_Missense_Mutation_p.R41G|RAB34_uc010wat.1_Missense_Mutation_p.R41G|RAB34_uc002hch.2_5'UTR|RAB34_uc010wau.1_5'UTR|RAB34_uc010wav.1_Missense_Mutation_p.R41G|RPL23A_uc002hci.2_5'Flank|SNORD42B_uc002hcj.1_5'Flank|RPL23A_uc002hck.1_5'Flank	NM_031934	NP_114140	Q9BZG1	RAB34_HUMAN	Ras-related protein RAB34 isoform 1						protein transport|small GTPase mediated signal transduction	Golgi apparatus	GTP binding				0	Lung NSC(42;0.00431)					ATGGGGAATCGGAGACTGCTG	0.632													5	12					0	0	0	0
CCL2	6347	broad.mit.edu	37	17	32583342	32583342	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr17:32583342C>A	uc002hhy.2	+	2	251	c.178C>A	c.(178-180)CCC>ACC	p.P60T		NM_002982	NP_002973	P13500	CCL2_HUMAN	small inducible cytokine A2 precursor	60				Missing: 90% reduction in activity.|Missing: 83% reduction in activity.	angiogenesis|anti-apoptosis|apoptotic cell clearance|astrocyte cell migration|cell adhesion|cellular response to interferon-gamma|cellular response to interleukin-1|cellular response to lipopolysaccharide|cellular response to tumor necrosis factor|G-protein signaling, coupled to cyclic nucleotide second messenger|helper T cell extravasation|humoral immune response|inflammatory response|JAK-STAT cascade|macrophage chemotaxis|monocyte chemotaxis|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of T cell activation|viral genome replication	extracellular space	CCR2 chemokine receptor binding|chemokine activity|protein kinase activity|signal transducer activity			pancreas(1)	1	Breast(3;0.00224)	Ovarian(249;0.0694)|Breast(31;0.151)|Lung NSC(157;0.153)		UCEC - Uterine corpus endometrioid carcinoma (308;0.000241)|BRCA - Breast invasive adenocarcinoma(366;0.0103)	Atorvastatin(DB01076)|Danazol(DB01406)|Mimosine(DB01055)|Simvastatin(DB00641)	CAGCAAGTGTCCCAAAGAAGC	0.493													14	30					1.3612e-06	1.4283e-06	1	0
GSDMB	55876	broad.mit.edu	37	17	38073560	38073560	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr17:38073560C>T	uc010cwj.2	-	1	15	c.10G>A	c.(10-12)GTA>ATA	p.V4I	GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_RNA|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Missense_Mutation_p.V4I|GSDMB_uc002hth.2_Missense_Mutation_p.V4I|GSDMB_uc010wem.1_Missense_Mutation_p.V4I	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	4						cytoplasm				breast(1)|pancreas(1)	2						TCCTCAAATACGCTGAACATT	0.433													18	47					0	0	0	0
RPS6KB1	6198	broad.mit.edu	37	17	57990070	57990070	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr17:57990070G>A	uc002ixy.2	+	3	320	c.217G>A	c.(217-219)GAA>AAA	p.E73K	RPS6KB1_uc010ddj.1_Missense_Mutation_p.E73K|RPS6KB1_uc010wom.1_Missense_Mutation_p.E20K|RPS6KB1_uc010won.1_Missense_Mutation_p.E73K|RPS6KB1_uc010woo.1_Missense_Mutation_p.E8K	NM_003161	NP_003152	P23443	KS6B1_HUMAN	ribosomal protein S6 kinase, 70kDa, polypeptide	73					apoptosis|G1/S transition of mitotic cell cycle|insulin receptor signaling pathway|negative regulation of apoptosis|phosphatidylinositol-mediated signaling|positive regulation of mitotic cell cycle|positive regulation of translational initiation|TOR signaling cascade	cell junction|cytoplasm|cytosol|mitochondrial outer membrane|nucleus|nucleus|synapse|synaptosome	ATP binding|protein binding|protein kinase activity			large_intestine(1)	1	all_cancers(5;1.63e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.57e-12)|all cancers(12;6.41e-11)			TGAGAAATTTGAAATCTCAGA	0.373													17	115					0	0	0	0
C17orf28	283987	broad.mit.edu	37	17	72959983	72959983	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr17:72959983C>A	uc002jmj.3	-	3	388	c.239G>T	c.(238-240)GGA>GTA	p.G80V	C17orf28_uc010wrs.1_5'UTR|C17orf28_uc002jmk.2_Missense_Mutation_p.G80V	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	80						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					ACTCTCAGCTCCCTGCACCAG	0.652													12	32					1.15919e-05	1.20782e-05	1	0
EIF4A3	9775	broad.mit.edu	37	17	78120703	78120703	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr17:78120703C>G	uc010wuc.1	-	2	131	c.58G>C	c.(58-60)GAG>CAG	p.E20Q	EIF4A3_uc002jxs.2_Missense_Mutation_p.E20Q	NM_014740	NP_055555	P38919	IF4A3_HUMAN	eukaryotic translation initiation factor 4A,	20					mRNA transport|negative regulation of translation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation|rRNA processing	catalytic step 2 spliceosome|cytoplasm|exon-exon junction complex|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|poly(A) RNA binding|protein binding			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)			ATGTCTTCCTCTTTGAGCAGC	0.592													5	38					0	0	0	0
RPTOR	57521	broad.mit.edu	37	17	78938109	78938109	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr17:78938109G>A	uc002jyt.1	+	34	4792	c.3987G>A	c.(3985-3987)TCG>TCA	p.S1329S	RPTOR_uc010wug.1_Silent_p.S1171S|RPTOR_uc002jyu.1_Silent_p.S222S	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	1329	WD 7.				cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						CCGTGTACTCGGTGGAGAAGC	0.652													19	36					0	0	0	0
ADCYAP1	116	broad.mit.edu	37	18	908272	908272	+	Silent	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr18:908272C>G	uc010dkg.2	+	4	368	c.249C>G	c.(247-249)GTC>GTG	p.V83V	ADCYAP1_uc010dkh.2_Silent_p.V83V	NM_001099733	NP_001093203	P18509	PACA_HUMAN	adenylate cyclase activating polypeptide	83					activation of adenylate cyclase activity|cell-cell signaling|female pregnancy|nerve growth factor receptor signaling pathway|regulation of G-protein coupled receptor protein signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|peptide hormone receptor binding				0						TTAGAGATGTCGCCCACGGGA	0.677													3	20					0	0	0	0
ASXL3	80816	broad.mit.edu	37	18	31325516	31325516	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr18:31325516C>G	uc010dmg.1	+	12	5759	c.5704C>G	c.(5704-5706)CCC>GCC	p.P1902A	ASXL3_uc002kxq.2_Missense_Mutation_p.P1609A	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1902					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GCGGCTGCTCCCCTCGTGTAG	0.498													6	93					0	0	0	0
SETBP1	26040	broad.mit.edu	37	18	42529990	42529990	+	Nonsense_Mutation	SNP	G	T	T	rs143196787		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr18:42529990G>T	uc010dni.2	+	4	981	c.685G>T	c.(685-687)GGA>TGA	p.G229*		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	229						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CTCTGACAGCGGACCCGTCAC	0.547									Schinzel-Giedion_syndrome				7	44					0.000157383	0.000162848	1	0
CXXC1	30827	broad.mit.edu	37	18	47811188	47811188	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr18:47811188C>T	uc002leq.3	-	8	1667	c.934G>A	c.(934-936)GAG>AAG	p.E312K	CXXC1_uc002lep.3_Missense_Mutation_p.E169K|CXXC1_uc002ler.3_Missense_Mutation_p.E312K|CXXC1_uc010doy.2_Missense_Mutation_p.E312K|CXXC1_uc002les.2_Missense_Mutation_p.E312K	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	312	Asp/Glu-rich (acidic).				histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						AATGGGGACTCTTCTGTGTCG	0.493													4	18					0	0	0	0
CXXC1	30827	broad.mit.edu	37	18	47811201	47811201	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr18:47811201C>T	uc002leq.3	-	8	1654	c.921G>A	c.(919-921)ATG>ATA	p.M307I	CXXC1_uc002lep.3_Missense_Mutation_p.M164I|CXXC1_uc002ler.3_Missense_Mutation_p.M307I|CXXC1_uc010doy.2_Missense_Mutation_p.M307I|CXXC1_uc002les.2_Missense_Mutation_p.M307I	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	307	Asp/Glu-rich (acidic).				histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CTGTGTCGCTCATCCAGGGCT	0.527													5	17					0	0	0	0
CCDC68	80323	broad.mit.edu	37	18	52571634	52571634	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr18:52571634G>A	uc002lfs.2	-	12	1135	c.963C>T	c.(961-963)ACC>ACT	p.T321T	CCDC68_uc002lft.2_Silent_p.T321T	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	321										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		AAACACCTTCGGTCTTCAATT	0.368													7	23					0	0	0	0
MED16	10025	broad.mit.edu	37	19	875395	875395	+	Silent	SNP	C	T	T	rs61755331	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:875395C>T	uc002lqd.1	-	10	1771	c.1620G>A	c.(1618-1620)ACG>ACA	p.T540T	MED16_uc010drw.1_Silent_p.T365T|MED16_uc002lqe.2_Silent_p.T529T|MED16_uc002lqf.2_Silent_p.T529T|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Silent_p.T460T|MED16_uc010xfx.1_Silent_p.T385T|MED16_uc010xfy.1_Intron|MED16_uc010xfz.1_5'Flank	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	540					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCGGGTCACCGTGCAGGGCG	0.647													8	31					0	0	0	0
MBD3	53615	broad.mit.edu	37	19	1581180	1581180	+	Silent	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:1581180G>C	uc002ltl.1	-	5	610	c.588C>G	c.(586-588)CTC>CTG	p.L196L	MBD3_uc002ltj.2_Silent_p.L196L|MBD3_uc002ltk.2_Silent_p.L164L	NM_003926	NP_003917	O95983	MBD3_HUMAN	methyl-CpG binding domain protein 3	196					transcription, DNA-dependent	NuRD complex	DNA binding|protein binding			ovary(1)|pancreas(1)|skin(1)	3		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.179)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGCGGCCGAGAGCTGTCCCG	0.652													5	14					0	0	0	0
TNFSF14	8740	broad.mit.edu	37	19	6670018	6670018	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:6670018G>A	uc002mfk.1	-	2	445	c.63C>T	c.(61-63)TTC>TTT	p.F21F	TNFSF14_uc002mfj.1_Silent_p.F21F	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	21	Cytoplasmic (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						CCAGCCTCGTGAATGGGATGT	0.642													19	80					0	0	0	0
NDUFA7	4701	broad.mit.edu	37	19	8381382	8381382	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:8381382C>G	uc002mjm.1	-	3	287	c.249G>C	c.(247-249)GAG>GAC	p.E83D		NM_005001	NP_004992	O95182	NDUA7_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	83					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0					NADH(DB00157)	ATCCTCACCTCTCTGCTGGCT	0.587													15	82					0	0	0	0
KEAP1	9817	broad.mit.edu	37	19	10610149	10610149	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:10610149G>A	uc002moq.1	-	2	717	c.561C>T	c.(559-561)ATC>ATT	p.I187I	KEAP1_uc002mor.1_Silent_p.I187I	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	187	BACK.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			CGAAGTTGGCGATGCCGATGG	0.592													4	44					0	0	0	0
ZNF653	115950	broad.mit.edu	37	19	11598248	11598248	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:11598248C>T	uc002mrz.1	-	4	1083	c.1030G>A	c.(1030-1032)GGT>AGT	p.G344S		NM_138783	NP_620138	Q96CK0	ZN653_HUMAN	zinc finger protein 653	344					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCGGGGACACCGCTGCCTGCT	0.657													26	24					0	0	0	0
SYCE2	256126	broad.mit.edu	37	19	13029104	13029104	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:13029104C>A	uc002mvr.2	-	2	78	c.63G>T	c.(61-63)TTG>TTT	p.L21F		NM_001105578	NP_001099048	Q6PIF2	SYCE2_HUMAN	synaptonemal complex central element protein 2	21					cell division	central element					0						TGCTCTCCCCCAAGGGCTGCG	0.602													13	41					1.05317e-09	1.12087e-09	1	0
B3GNT3	10331	broad.mit.edu	37	19	17922878	17922878	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:17922878G>A	uc002nhk.1	+	3	1151	c.1066G>A	c.(1066-1068)GAT>AAT	p.D356N	B3GNT3_uc002nhl.1_Missense_Mutation_p.D356N|B3GNT3_uc010ebd.1_Missense_Mutation_p.D356N|B3GNT3_uc010ebe.1_Missense_Mutation_p.D356N	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	356	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						GCTCATGTGGGATGCGCTGAA	0.587													21	45					0	0	0	0
LSM4	25804	broad.mit.edu	37	19	18420497	18420497	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:18420497C>T	uc002niq.2	-	4	490	c.319G>A	c.(319-321)GCT>ACT	p.A107T		NM_012321	NP_036453	Q9Y4Z0	LSM4_HUMAN	U6 snRNA-associated Sm-like protein 4	107					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|mRNA processing|RNA splicing	cytosol|U6 snRNP	protein binding|RNA binding				0						CCTCGGCCAGCGCCGCCCATG	0.682													9	40					0	0	0	0
HAPLN4	404037	broad.mit.edu	37	19	19372352	19372352	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:19372352G>A	uc002nmb.2	-	2	79	c.24C>T	c.(22-24)CTC>CTT	p.L8L	HAPLN4_uc002nmc.2_Silent_p.L8L	NM_023002	NP_075378	Q86UW8	HPLN4_HUMAN	hyaluronan and proteoglycan link protein 4	8					cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			pancreas(1)	1			Epithelial(12;0.00575)			CGCCGGGACCGAGGGCCGCCC	0.766													4	10					0	0	0	0
C19orf47	126526	broad.mit.edu	37	19	40842076	40842076	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:40842076C>T	uc002oni.3	-	4	275	c.274G>A	c.(274-276)GTG>ATG	p.V92M	C19orf47_uc002ong.2_Translation_Start_Site|C19orf47_uc002onh.2_Missense_Mutation_p.V25M	NM_178830	NP_849152	Q8N9M1	CS047_HUMAN	hypothetical protein LOC126526	92										ovary(1)|skin(1)	2			Lung(22;0.000636)			ACCACGGTCACGCCCAGCTCA	0.572													6	41					0	0	0	0
CEACAM6	4680	broad.mit.edu	37	19	42260722	42260722	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:42260722C>T	uc002orm.2	+	2	428	c.279C>T	c.(277-279)CCC>CCT	p.P93P		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	93	Ig-like V-type.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		CCCCAGGGCCCGCATACAGTG	0.458													72	103					0	0	0	0
PSG1	5669	broad.mit.edu	37	19	43382154	43382154	+	Missense_Mutation	SNP	C	T	T	rs142473373		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:43382154C>T	uc002ovb.2	-	2	479	c.341G>A	c.(340-342)CGG>CAG	p.R114Q	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.R114Q|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.R114Q|PSG1_uc010eio.1_Missense_Mutation_p.R114Q|PSG1_uc002oux.1_Missense_Mutation_p.R43Q|PSG1_uc002ouy.1_Missense_Mutation_p.R114Q|PSG1_uc002ouz.1_Missense_Mutation_p.R114Q|PSG1_uc002ova.1_Missense_Mutation_p.R114Q|PSG1_uc002ovc.2_Missense_Mutation_p.R114Q|PSG1_uc002ovd.1_Missense_Mutation_p.R114Q	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	114	Ig-like V-type.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				TGCGTCCTCCCGGGTGACATT	0.453													149	136					0	0	0	0
HIF3A	64344	broad.mit.edu	37	19	46832529	46832529	+	Silent	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:46832529C>G	uc002peh.2	+	12	1535	c.1506C>G	c.(1504-1506)CTC>CTG	p.L502L	HIF3A_uc002peg.3_Silent_p.L502L|HIF3A_uc002pei.3_Silent_p.L446L|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Silent_p.L446L|HIF3A_uc010xxy.1_Silent_p.L433L|HIF3A_uc002pel.2_Silent_p.L500L|HIF3A_uc010xxz.1_Silent_p.L451L	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	502	NTAD.|ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		ACTTCCAGCTCAACGCCAGCG	0.587													17	81					0	0	0	0
NUCB1	4924	broad.mit.edu	37	19	49422529	49422529	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:49422529G>A	uc002plb.3	+	10	1060	c.988G>A	c.(988-990)GGG>AGG	p.G330R	NUCB1_uc002pla.2_Missense_Mutation_p.G330R|NUCB1_uc002plc.2_Missense_Mutation_p.G330R|NUCB1_uc002pld.2_5'UTR	NM_006184	NP_006175	Q02818	NUCB1_HUMAN	nucleobindin 1 precursor	330						ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|membrane|microtubule cytoskeleton	calcium ion binding|DNA binding				0		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000171)|all cancers(93;0.000333)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0244)		TGGGGACACCGGGGAGGGCTG	0.577													6	37					0	0	0	0
CCDC155	147872	broad.mit.edu	37	19	49910549	49910549	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:49910549C>T	uc002pnm.1	+	11	1103	c.929C>T	c.(928-930)TCT>TTT	p.S310F	CCDC155_uc010emx.1_Missense_Mutation_p.S283F	NM_144688	NP_653289	Q8N6L0	CC155_HUMAN	coiled-coil domain containing 155	310	Potential.					integral to membrane	calcium ion binding			ovary(1)|central_nervous_system(1)	2						ACCATCCTCTCTGAGGTAAGG	0.572													3	21					0	0	0	0
NAPSA	9476	broad.mit.edu	37	19	50861932	50861932	+	Missense_Mutation	SNP	A	T	T	rs138846093		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:50861932A>T	uc002prx.2	-	9	1194	c.1141T>A	c.(1141-1143)TAT>AAT	p.Y381N	NR1H2_uc002prv.3_Intron	NM_004851	NP_004842	O96009	NAPSA_HUMAN	napsin A preproprotein	381					proteolysis	extracellular region	aspartic-type endopeptidase activity				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00743)|GBM - Glioblastoma multiforme(134;0.0183)		ACGGCCACATACGTCCCCAAG	0.677													4	13					0	0	0	0
ZNF667	63934	broad.mit.edu	37	19	56953259	56953259	+	Silent	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr19:56953259G>T	uc002qnd.2	-	5	1267	c.1105C>A	c.(1105-1107)CGG>AGG	p.R369R	ZNF667_uc010etl.2_Silent_p.R151R|ZNF667_uc002qne.2_Silent_p.R369R|ZNF667_uc010etm.2_Silent_p.R312R	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	369	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		GTTGAAAGCCGCCTGAAGAAC	0.378													24	24					7.92952e-12	8.65567e-12	1	0
ASXL2	55252	broad.mit.edu	37	2	25978930	25978930	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:25978930G>A	uc002rgs.2	-	9	1214	c.993C>T	c.(991-993)TTC>TTT	p.F331F	ASXL2_uc002rgt.1_Silent_p.F71F	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	331					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTGAAGTGAAGAATTCATTGT	0.453													12	76					0	0	0	0
CENPA	1058	broad.mit.edu	37	2	27015013	27015013	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:27015013C>T	uc002rhr.2	+	2	298	c.115C>T	c.(115-117)CAA>TAA	p.Q39*	CENPA_uc002rht.2_RNA|CENPA_uc002rhs.2_Nonsense_Mutation_p.Q39*	NM_001809	NP_001800	P49450	CENPA_HUMAN	centromere protein A isoform a	39					CenH3-containing nucleosome assembly at centromere|establishment of mitotic spindle orientation|interspecies interaction between organisms|kinetochore assembly|mitotic prometaphase|protein localization to chromosome, centromeric region	condensed nuclear chromosome kinetochore|cytosol|nucleoplasm|nucleosome	chromatin binding|DNA binding|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTCCTCCCATCAACACAGTCG	0.512													7	16					0	0	0	0
CAD	790	broad.mit.edu	37	2	27463149	27463149	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:27463149G>A	uc002rji.2	+	35	5675	c.5513G>A	c.(5512-5514)CGC>CAC	p.R1838H	CAD_uc010eyw.2_Missense_Mutation_p.R1775H	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	1838	Linker.				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	GAAAGACCCCGCCGTGGCATC	0.443													15	112					0	0	0	0
SLC30A3	7781	broad.mit.edu	37	2	27480162	27480162	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:27480162C>T	uc002rjk.2	-	5	823	c.637G>A	c.(637-639)GAG>AAG	p.E213K	SLC30A3_uc002rjj.2_Silent_p.Q58Q|SLC30A3_uc010ylh.1_Missense_Mutation_p.E208K	NM_003459	NP_003450	Q99726	ZNT3_HUMAN	solute carrier family 30 (zinc transporter),	213	Cytoplasmic (Potential).				regulation of sequestering of zinc ion	cell junction|integral to plasma membrane|late endosome|membrane fraction|synaptic vesicle membrane	zinc transporting ATPase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGTGCATACTCTGCTCCCCTA	0.672													8	17					0	0	0	0
STRN	6801	broad.mit.edu	37	2	37078179	37078179	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:37078179C>T	uc002rpn.2	-	16	2059	c.2050G>A	c.(2050-2052)GAA>AAA	p.E684K	STRN_uc010ezx.2_Missense_Mutation_p.E647K	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	684	WD 4.				dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				TGCCTGTCTTCATGAGCAGTG	0.328													14	64					0	0	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656665	40656665	+	Silent	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:40656665C>G	uc002rrx.2	-	1	780	c.756G>C	c.(754-756)GCG>GCC	p.A252A	SLC8A1_uc002rry.2_Silent_p.A252A|SLC8A1_uc002rrz.2_Silent_p.A252A|SLC8A1_uc002rsa.2_Silent_p.A252A|SLC8A1_uc002rsd.3_Silent_p.A252A|SLC8A1_uc002rsb.1_Silent_p.A252A|SLC8A1_uc010fan.1_Silent_p.A252A|SLC8A1_uc002rsc.1_Silent_p.A252A	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	252	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GTCTCCTATCCGCTACCCAAG	0.443													18	107					0	0	0	0
ATP6V1E2	90423	broad.mit.edu	37	2	46739793	46739793	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:46739793C>G	uc002ruy.2	-	2	1172	c.58G>C	c.(58-60)GAG>CAG	p.E20Q	ATP6V1E2_uc002ruz.2_Missense_Mutation_p.E20Q	NM_080653	NP_542384	Q96A05	VATE2_HUMAN	ATPase, H+ transporting, lysosomal 31kDa, V1	20					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting two-sector ATPase complex, catalytic domain	proton-transporting ATPase activity, rotational mechanism			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.151)			GCTTCCTGCTCAATGAAAGCC	0.507													10	53					0	0	0	0
MSH2	4436	broad.mit.edu	37	2	47656948	47656948	+	Missense_Mutation	SNP	C	T	T	rs63750496		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:47656948C>T	uc002rvy.1	+	7	1212	c.1144C>T	c.(1144-1146)CGT>TGT	p.R382C	MSH2_uc010yoh.1_Missense_Mutation_p.R316C|MSH2_uc002rvz.2_Missense_Mutation_p.R382C|MSH2_uc010fbg.2_Missense_Mutation_p.R192C	NM_000251	NP_000242	P43246	MSH2_HUMAN	mutS homolog 2	382					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding|Y-form DNA binding	p.?(1)		large_intestine(33)|haematopoietic_and_lymphoid_tissue(6)|endometrium(4)|ovary(3)|cervix(2)|central_nervous_system(2)|stomach(1)|small_intestine(1)|breast(1)|skin(1)|prostate(1)	55		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AGATTTACTTCGTCGATTCCC	0.328			D|Mis|N|F|S		colorectal|endometrial|ovarian	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				10	44					0	0	0	0
LRRTM1	347730	broad.mit.edu	37	2	80530153	80530153	+	Silent	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:80530153C>G	uc002sok.1	-	2	1062	c.792G>C	c.(790-792)TCG>TCC	p.S264S	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	264	LRR 8.|Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						TCTCGTTGCCCGACAAGTCCA	0.607										HNSCC(69;0.2)			8	44					0	0	0	0
LRRTM1	347730	broad.mit.edu	37	2	80530267	80530267	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:80530267G>A	uc002sok.1	-	2	948	c.678C>T	c.(676-678)TTC>TTT	p.F226F	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	226	LRR 6.|Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						GGAAGTGGGCGAAGTTCACCT	0.582										HNSCC(69;0.2)			17	87					0	0	0	0
KYNU	8942	broad.mit.edu	37	2	143798151	143798151	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:143798151G>A	uc002tvl.2	+	13	1326	c.1196G>A	c.(1195-1197)CGG>CAG	p.R399Q	KYNU_uc010fnm.2_Missense_Mutation_p.R399Q	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	399					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	GTAGAGGAGCGGGGGTGCCAG	0.408													9	48					0	0	0	0
RIF1	55183	broad.mit.edu	37	2	152293769	152293769	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:152293769C>T	uc002txm.2	+	13	1517	c.1387C>T	c.(1387-1389)CCG>TCG	p.P463S	RIF1_uc002txl.2_Missense_Mutation_p.P463S|RIF1_uc010fnv.1_Missense_Mutation_p.P427S|RIF1_uc002txn.2_Missense_Mutation_p.P463S|RIF1_uc002txo.2_Missense_Mutation_p.P463S|RIF1_uc010zby.1_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	463					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		ATTGGAACATCCGTTAATCAG	0.338													11	52					0	0	0	0
PLA2R1	22925	broad.mit.edu	37	2	160801458	160801458	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:160801458G>A	uc002ube.1	-	28	4310	c.4103C>T	c.(4102-4104)CCG>CTG	p.P1368L	PLA2R1_uc010zcp.1_Missense_Mutation_p.P1366L	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	1368	Extracellular (Potential).|C-type lectin 8.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						TTCTTGACACGGGGATAGCTG	0.428													12	92					0	0	0	0
SCN1A	6323	broad.mit.edu	37	2	166856246	166856246	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:166856246A>G	uc010zcz.1	-	22	4310	c.4292T>C	c.(4291-4293)GTT>GCT	p.V1431A	SCN1A_uc002udo.3_Missense_Mutation_p.V1311A|SCN1A_uc010fpk.2_Missense_Mutation_p.V1283A	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1442	III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TCTGGAATCAACTGCTGCATA	0.308													12	84					0	0	0	0
LRP2	4036	broad.mit.edu	37	2	170101321	170101321	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:170101321G>A	uc002ues.2	-	22	3525	c.3312C>T	c.(3310-3312)CAC>CAT	p.H1104H	LRP2_uc010zdf.1_Silent_p.H967H	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1104	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AAGCAGGTGCGTGGGTGGGGC	0.537													16	97					0	0	0	0
GORASP2	26003	broad.mit.edu	37	2	171806117	171806117	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:171806117C>G	uc002ugk.2	+	3	353	c.213C>G	c.(211-213)ATC>ATG	p.I71M	GORASP2_uc002ugj.2_Missense_Mutation_p.I3M|GORASP2_uc010zdl.1_Missense_Mutation_p.I83M|GORASP2_uc010zdm.1_Missense_Mutation_p.I27M|GORASP2_uc002ugl.2_Missense_Mutation_p.I3M	NM_015530	NP_056345	Q9H8Y8	GORS2_HUMAN	golgi reassembly stacking protein 2	71	PDZ.					Golgi membrane				breast(1)|central_nervous_system(1)	2						AGATGCTTATCTATAGCAGCA	0.438													9	59					0	0	0	0
HAT1	8520	broad.mit.edu	37	2	172809472	172809472	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:172809472C>T	uc002uhi.2	+	4	338	c.262C>T	c.(262-264)CGT>TGT	p.R88C	HAT1_uc010fqi.2_Intron|HAT1_uc002uhj.2_Missense_Mutation_p.R3C	NM_003642	NP_003633	O14929	HAT1_HUMAN	histone acetyltransferase 1	88					chromatin silencing at telomere|DNA packaging	cytoplasm|nuclear matrix|nucleoplasm	histone acetyltransferase activity|protein binding			large_intestine(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.216)			AACAATGTTCCGTGTTGAATA	0.313													10	45					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179403830	179403830	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:179403830C>G	uc010zfg.1	-	302	91352	c.91128G>C	c.(91126-91128)TGG>TGC	p.W30376C	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.W24071C|TTN_uc010zfi.1_Missense_Mutation_p.W24004C|TTN_uc010zfj.1_Missense_Mutation_p.W23879C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31303							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTGTCTGACCCACTTGTCAG	0.498													9	57					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179424911	179424911	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:179424911A>G	uc010zfg.1	-	275	78468	c.78244T>C	c.(78244-78246)TTC>CTC	p.F26082L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.F19777L|TTN_uc010zfi.1_Missense_Mutation_p.F19710L|TTN_uc010zfj.1_Missense_Mutation_p.F19585L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27009							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGGTAGGAACACTGGATCT	0.463													17	65					0	0	0	0
DNAH7	56171	broad.mit.edu	37	2	196891589	196891589	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:196891589C>G	uc002utj.3	-	7	663	c.562G>C	c.(562-564)GTA>CTA	p.V188L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	188	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AAATCCAGTACGTGTTCTAGC	0.353													3	42					0	0	0	0
PSMD1	5707	broad.mit.edu	37	2	231947609	231947609	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:231947609G>A	uc002vrn.1	+	13	1557	c.1426G>A	c.(1426-1428)GGT>AGT	p.G476S	PSMD1_uc002vrm.1_Missense_Mutation_p.G476S|PSMD1_uc010fxu.1_Missense_Mutation_p.G340S	NM_002807	NP_002798	Q99460	PSMD1_HUMAN	proteasome 26S non-ATPase subunit 1	476	PC 3.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding			ovary(1)|skin(1)	2		Ovarian(221;0.000626)|Medulloblastoma(418;0.0109)|Renal(207;0.0112)|Lung NSC(271;0.0538)|all_lung(227;0.0713)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;4e-26)|LUSC - Lung squamous cell carcinoma(224;0.0138)|Lung(119;0.0168)	Bortezomib(DB00188)	CGTTAGACACGGTGGCAGTCT	0.373													4	28					0	0	0	0
RAMP1	10267	broad.mit.edu	37	2	238785963	238785963	+	Silent	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:238785963C>A	uc002vxj.2	+	2	282	c.150C>A	c.(148-150)GCC>GCA	p.A50A		NM_005855	NP_005846	O60894	RAMP1_HUMAN	receptor activity-modifying protein 1 precursor	50	Extracellular (Potential).				intracellular protein transport|regulation of G-protein coupled receptor protein signaling pathway	integral to plasma membrane	protein transporter activity				0		Breast(86;0.000596)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;9.56e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.49e-11)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;8.49e-08)|BRCA - Breast invasive adenocarcinoma(100;0.00013)|Lung(119;0.0119)|LUSC - Lung squamous cell carcinoma(224;0.0288)	Pramlintide(DB01278)	ACATGGAGGCCGTCGGGGAGA	0.657													19	61					1.01871e-10	1.09991e-10	1	0
SCLY	51540	broad.mit.edu	37	2	239003069	239003069	+	Silent	SNP	C	T	T	rs149428035		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:239003069C>T	uc010fyv.2	+	10	1078	c.1014C>T	c.(1012-1014)TTC>TTT	p.F338F	SCLY_uc002vxm.3_Silent_p.F305F|SCLY_uc002vxn.2_3'UTR|SCLY_uc010znq.1_Silent_p.F132F|SCLY_uc010znr.1_Silent_p.F244F|SCLY_uc002vxp.3_5'Flank	NM_016510	NP_057594	Q96I15	SCLY_HUMAN	selenocysteine lyase	338					cellular amino acid metabolic process	cytosol	pyridoxal phosphate binding|selenocysteine lyase activity|transferase activity			ovary(2)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;1.37e-23)|OV - Ovarian serous cystadenocarcinoma(60;4.6e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;8.25e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000128)|Lung(119;0.0118)|LUSC - Lung squamous cell carcinoma(224;0.0285)		AGGCTGAATTCGGTCAGAAGA	0.448													5	93					0	0	0	0
MYEOV2	150678	broad.mit.edu	37	2	241066179	241066179	+	Missense_Mutation	SNP	C	T	T	rs140948790		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:241066179C>T	uc002vyu.1	-	5	560	c.560G>A	c.(559-561)CGG>CAG	p.R187Q		NM_138336	NP_612209	Q8WXC6	MYOV2_HUMAN	hypothetical protein LOC150678 isoform 1	Error:Variant_position_missing_in_Q8WXC6_after_alignment											0		all_epithelial(40;1.56e-11)|Breast(86;0.0002)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.81e-30)|all cancers(36;1.1e-27)|OV - Ovarian serous cystadenocarcinoma(60;2.74e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.54e-06)|Lung(119;0.00361)|LUSC - Lung squamous cell carcinoma(224;0.0153)|Colorectal(34;0.0202)|COAD - Colon adenocarcinoma(134;0.143)		TTGGTTCTTCCGTAAACTGTT	0.483													17	117					0	0	0	0
SNED1	25992	broad.mit.edu	37	2	241987826	241987826	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr2:241987826C>T	uc002wah.1	+	9	1368	c.1368C>T	c.(1366-1368)CCC>CCT	p.P456P		NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	456	EGF-like 5.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		GCGAGTGCCCCGAAGGCTTCA	0.662													4	9					0	0	0	0
COMMD7	149951	broad.mit.edu	37	20	31291246	31291246	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr20:31291246G>C	uc002wya.3	-	9	1158	c.541C>G	c.(541-543)CAG>GAG	p.Q181E	COMMD7_uc010ged.2_Missense_Mutation_p.Q180E|COMMD7_uc002wyb.2_3'UTR	NM_053041	NP_444269	Q86VX2	COMD7_HUMAN	COMM domain containing 7 isoform 1	181	COMM.				negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|tumor necrosis factor-mediated signaling pathway		NF-kappaB binding			breast(1)	1						CTGTAGAACTGAGGCAAGGTT	0.478													7	46					0	0	0	0
C20orf71	128861	broad.mit.edu	37	20	31813054	31813054	+	Splice_Site	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr20:31813054G>T	uc002wyr.2	+	4	744	c.536_splice	c.e4+1	p.E179_splice	C20orf71_uc002wys.2_Splice_Site_p.E143_splice	NM_178466	NP_848561	Q9BQP9	SPLC3_HUMAN	short long palate, lung and nasal epithelium							extracellular region	lipid binding			ovary(1)|skin(1)	2						TCCTCACTGAGTAAGACCCCA	0.547													9	84					0.00448238	0.00457448	1	0
GSS	2937	broad.mit.edu	37	20	33529522	33529522	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr20:33529522G>A	uc002xbg.2	-	6	682	c.602C>T	c.(601-603)TCA>TTA	p.S201L	GSS_uc010zun.1_Missense_Mutation_p.S73L|GSS_uc010zuo.1_Intron|GSS_uc010zup.1_Missense_Mutation_p.S132L|GSS_uc002xbh.2_RNA|GSS_uc010gez.1_Intron	NM_000178	NP_000169	P48637	GSHB_HUMAN	glutathione synthetase	201					nervous system development|response to oxidative stress|xenobiotic metabolic process	cytosol	ATP binding|glutathione binding|glutathione synthase activity|magnesium ion binding|protein homodimerization activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(18;0.035)		Glutathione(DB00143)|Glycine(DB00145)|L-Cysteine(DB00151)	TTACTTGGGTGAGCCGTAGAG	0.483													11	63					0	0	0	0
SEMG1	6406	broad.mit.edu	37	20	43836743	43836743	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr20:43836743C>G	uc002xni.2	+	2	862	c.805C>G	c.(805-807)CAG>GAG	p.Q269E	SEMG1_uc002xnj.2_Missense_Mutation_p.Q269E|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Missense_Mutation_p.Q269E	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	269	42 AA repeat 2.				insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				GAATCAACACCAGACAAAAAA	0.398													9	63					0	0	0	0
BMP7	655	broad.mit.edu	37	20	55777625	55777625	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr20:55777625G>A	uc010gip.1	-	3	1195	c.666C>T	c.(664-666)GGC>GGT	p.G222G	BMP7_uc010giq.1_Silent_p.G222G|BMP7_uc002xyc.2_Silent_p.G222G	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	222					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			ACACCAGCCAGCCCTCCTCCG	0.627													9	35					0	0	0	0
DSCAM	1826	broad.mit.edu	37	21	41416162	41416162	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr21:41416162C>T	uc002yyq.1	-	31	5678	c.5226G>A	c.(5224-5226)GCG>GCA	p.A1742A	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1742	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGCGGTTTCTCGCTGTGGGCC	0.602													8	24					0	0	0	0
TMPRSS2	7113	broad.mit.edu	37	21	42861456	42861456	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr21:42861456G>A	uc002yzj.2	-	4	437	c.303C>T	c.(301-303)GCC>GCT	p.A101A	TMPRSS2_uc010gor.2_Silent_p.A138A|TMPRSS2_uc010gos.1_Silent_p.A101A	NM_005656	NP_005647	O15393	TMPS2_HUMAN	transmembrane protease, serine 2 isoform 2	101	Helical; Signal-anchor for type II membrane protein; (Potential).				proteolysis	cytoplasm|extracellular region|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity		TMPRSS2/ERG(2499)|TMPRSS2/ETV1(24)	prostate(2523)|central_nervous_system(1)	2524		Prostate(19;4.48e-07)|all_epithelial(19;0.031)				GTAGGCCAGCGGCCAGCGCAG	0.592			T	ERG|ETV1|ETV4|ETV5	prostate 								14	30					0	0	0	0
ADARB1	104	broad.mit.edu	37	21	46596022	46596022	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr21:46596022G>A	uc002zgy.2	+	4	841	c.406G>A	c.(406-408)GAG>AAG	p.E136K	ADARB1_uc002zgr.2_Missense_Mutation_p.E136K|ADARB1_uc002zgs.2_RNA|ADARB1_uc002zgw.2_Missense_Mutation_p.E136K|ADARB1_uc002zgv.2_RNA|ADARB1_uc002zgt.2_Missense_Mutation_p.E136K|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_RNA|ADARB1_uc002zgu.2_RNA|ADARB1_uc011afo.1_Missense_Mutation_p.E185K	NM_015833	NP_056648	P78563	RED1_HUMAN	RNA-specific adenosine deaminase B1 isoform 2	136	DRBM 1.				adenosine to inosine editing|mRNA modification|mRNA processing|RNA processing	nucleoplasm|nucleus	double-stranded RNA adenosine deaminase activity|double-stranded RNA adenosine deaminase activity|double-stranded RNA binding|double-stranded RNA binding|metal ion binding|mRNA binding|RNA binding			skin(1)	1				Colorectal(79;0.115)		CCATGCTGCTGAGAAGGCCTT	0.542													9	43					0	0	0	0
PRAME	23532	broad.mit.edu	37	22	22892745	22892745	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr22:22892745A>C	uc002zwf.2	-	4	512	c.356T>G	c.(355-357)CTT>CGT	p.L119R	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Missense_Mutation_p.L103R|PRAME_uc010gtr.2_Missense_Mutation_p.L119R|PRAME_uc002zwg.2_Missense_Mutation_p.L119R|PRAME_uc002zwh.2_Missense_Mutation_p.L119R|PRAME_uc002zwi.2_Missense_Mutation_p.L119R|PRAME_uc002zwj.2_Missense_Mutation_p.L119R|PRAME_uc002zwk.2_Missense_Mutation_p.L119R	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	119					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		CAGCACTTGAAGTTTCCACCT	0.438													8	60					0	0	0	0
HSCB	150274	broad.mit.edu	37	22	29139936	29139936	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr22:29139936C>T	uc003aea.2	+	2	344	c.303C>T	c.(301-303)GTC>GTT	p.V101V	CHEK2_uc003adt.1_5'Flank|CHEK2_uc003adu.1_5'Flank|CHEK2_uc003adv.1_5'Flank|CHEK2_uc003adw.1_5'Flank|CHEK2_uc003adx.1_5'Flank|CHEK2_uc003ady.1_5'Flank|CHEK2_uc003adz.1_5'Flank	NM_172002	NP_741999	Q8IWL3	HSC20_HUMAN	J-type co-chaperone HSC20 precursor	101	J.				iron-sulfur cluster assembly|protein folding	mitochondrion	chaperone binding|heat shock protein binding|metal ion binding			kidney(1)	1						AGCGTCTTGTCCACCCAGATT	0.483													14	91					0	0	0	0
RFPL2	10739	broad.mit.edu	37	22	32586995	32586995	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr22:32586995G>A	uc003amg.3	-	5	1837	c.901C>T	c.(901-903)CGC>TGC	p.R301C	RFPL2_uc003ame.3_Missense_Mutation_p.R240C|RFPL2_uc003amf.3_Missense_Mutation_p.R211C|RFPL2_uc003amh.3_Missense_Mutation_p.R211C	NM_001098527	NP_001091997	O75678	RFPL2_HUMAN	ret finger protein-like 2 isoform 2	301	B30.2/SPRY.						zinc ion binding			skin(1)	1						TGTAACTTGCGGTCTACGAAG	0.517													12	38					0	0	0	0
TAB1	10454	broad.mit.edu	37	22	39826084	39826084	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr22:39826084G>A	uc003axt.2	+	11	1421	c.1372G>A	c.(1372-1374)GAC>AAC	p.D458N	TAB1_uc003axr.2_Missense_Mutation_p.D534N|TAB1_uc011aok.1_Missense_Mutation_p.D292N|TAB1_uc003axu.1_Intron	NM_006116	NP_006107	Q15750	TAB1_HUMAN	mitogen-activated protein kinase kinase kinase 7	458					activation of MAPK activity|activation of MAPKKK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane	catalytic activity|protein binding			breast(1)	1						CTCCAGCTCTGACGGAGGCCT	0.627													7	86					0	0	0	0
EFCAB6	64800	broad.mit.edu	37	22	44079707	44079707	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr22:44079707C>A	uc003bdy.1	-	12	1386	c.1171G>T	c.(1171-1173)GAA>TAA	p.E391*	EFCAB6_uc003bdz.1_Nonsense_Mutation_p.E239*|EFCAB6_uc010gzi.1_Nonsense_Mutation_p.E239*|EFCAB6_uc010gzk.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Nonsense_Mutation_p.E388*	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	391					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				ATGATGTTTTCCTTGTGAGAT	0.343													21	91					1.28384e-07	1.35668e-07	1	0
TUBGCP6	85378	broad.mit.edu	37	22	50660299	50660299	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr22:50660299G>A	uc003bkb.1	-	16	3001	c.2489C>T	c.(2488-2490)ACG>ATG	p.T830M	TUBGCP6_uc003bka.1_Translation_Start_Site|TUBGCP6_uc010har.1_Missense_Mutation_p.T822M|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_Missense_Mutation_p.T26M	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	830					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GCCCGGAGACGTGACCTGAAA	0.622													6	32					0	0	0	0
SBF1	6305	broad.mit.edu	37	22	50898068	50898068	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr22:50898068C>G	uc003blh.2	-	27	3714	c.3519G>C	c.(3517-3519)CAG>CAC	p.Q1173H	SBF1_uc011arx.1_Missense_Mutation_p.Q837H	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1173	Myotubularin phosphatase.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		CCTGGACACTCTGGGGCACGA	0.701													3	33					0	0	0	0
CAV3	859	broad.mit.edu	37	3	8787388	8787388	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:8787388C>T	uc003bra.2	+	2	358	c.291C>T	c.(289-291)TTC>TTT	p.F97F	C3orf32_uc003bqz.2_5'Flank|CAV3_uc003brb.2_Silent_p.F97F	NM_001234	NP_001225	P56539	CAV3_HUMAN	caveolin 3	97	Required for interaction with DAG1.		F -> C (in LQT9; increase in late sodium current).|Missing (in HYPCK).		cell growth|elevation of cytosolic calcium ion concentration|muscle organ development|negative regulation of cardiac muscle hypertrophy|negative regulation of cell size|negative regulation of MAP kinase activity|negative regulation of sarcomere organization|positive regulation of microtubule polymerization|regulation of skeletal muscle contraction|regulation of ventricular cardiomyocyte membrane repolarization|T-tubule organization	caveola|dystrophin-associated glycoprotein complex|Golgi membrane|neuromuscular junction|T-tubule	protein C-terminus binding|protein complex binding|protein complex scaffold|sodium channel regulator activity			lung(1)|breast(1)	2						GCATCTCCTTCTGCCACATCT	0.582													4	15					0	0	0	0
CACNA1D	776	broad.mit.edu	37	3	53700551	53700551	+	Missense_Mutation	SNP	G	A	A	rs148674323		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:53700551G>A	uc003dgv.3	+	7	1268	c.1105G>A	c.(1105-1107)GTG>ATG	p.V369M	CACNA1D_uc003dgu.3_Missense_Mutation_p.V369M|CACNA1D_uc003dgy.3_Missense_Mutation_p.V369M|CACNA1D_uc003dgw.3_Missense_Mutation_p.V16M	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	369	Extracellular (Potential).|I.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	CTGGACAGATGTGCTCTACTG	0.512													41	64					0	0	0	0
IFT57	55081	broad.mit.edu	37	3	107938325	107938325	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:107938325C>T	uc003dwx.3	-	2	555	c.307G>A	c.(307-309)GAG>AAG	p.E103K		NM_018010	NP_060480	Q9NWB7	IFT57_HUMAN	estrogen-related receptor beta like 1	103					activation of caspase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cilium|microtubule basal body	DNA binding|protein binding			ovary(1)|skin(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(3;0.0428)|Epithelial(53;0.246)			TGAGGCTGCTCAAAGGGACGT	0.418													6	82					0	0	0	0
SLC35A5	55032	broad.mit.edu	37	3	112300018	112300018	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:112300018G>C	uc003dze.2	+	6	1299	c.1054G>C	c.(1054-1056)GAC>CAC	p.D352H		NM_017945	NP_060415	Q9BS91	S35A5_HUMAN	solute carrier family 35, member A5	352						Golgi membrane|integral to membrane	nucleotide-sugar transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1						CCTGGTCTTTGACTTCAGGCC	0.453													12	86					0	0	0	0
RABL3	285282	broad.mit.edu	37	3	120424914	120424914	+	Missense_Mutation	SNP	A	C	C	rs151038439		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:120424914A>C	uc003edx.2	-	4	346	c.316T>G	c.(316-318)TTG>GTG	p.L106V		NM_173825	NP_776186	Q5HYI8	RABL3_HUMAN	RAB, member of RAS oncogene family-like 3	106	Small GTPase-like.				small GTPase mediated signal transduction		GTP binding				0				GBM - Glioblastoma multiforme(114;0.151)		CAACGACGCAAGTTTTGGGAG	0.383													10	39					0	0	0	0
DTX3L	151636	broad.mit.edu	37	3	122287708	122287708	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:122287708G>C	uc003efk.2	+	3	861	c.772G>C	c.(772-774)GAG>CAG	p.E258Q	DTX3L_uc010hrj.2_Intron	NM_138287	NP_612144	Q8TDB6	DTX3L_HUMAN	deltex 3-like	258					histone monoubiquitination|response to DNA damage stimulus	cytoplasm|nucleus	histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)	4				GBM - Glioblastoma multiforme(114;0.0459)		CAACTCAATAGAGAAAAGATT	0.373													3	33					0	0	0	0
CLSTN2	64084	broad.mit.edu	37	3	140167508	140167508	+	Missense_Mutation	SNP	G	A	A	rs148820533		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:140167508G>A	uc003etn.2	+	6	1125	c.935G>A	c.(934-936)CGG>CAG	p.R312Q	CLSTN2_uc003etm.2_Missense_Mutation_p.R312Q	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	312	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GGTTGTGACCGGGAGACCTAC	0.443										HNSCC(16;0.037)			22	236					0	0	0	0
FAM194A	131831	broad.mit.edu	37	3	150377925	150377925	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:150377925C>T	uc003eyg.2	-	14	1803	c.1746G>A	c.(1744-1746)GAG>GAA	p.E582E	FAM194A_uc003eyh.2_Silent_p.E436E	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	582										skin(2)|ovary(1)	3						GGATTGGAATCTCCTCAGGGT	0.463													10	129					0	0	0	0
MED12L	116931	broad.mit.edu	37	3	150908657	150908657	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:150908657G>A	uc003eyp.2	+	13	1945	c.1907G>A	c.(1906-1908)CGG>CAG	p.R636Q	MED12L_uc011bnz.1_Missense_Mutation_p.R496Q|MED12L_uc003eyn.2_Missense_Mutation_p.R636Q|MED12L_uc003eyo.2_Missense_Mutation_p.R636Q	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	636					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ACTCGGCCGCGGTCACCAGTA	0.502													7	62					0	0	0	0
MED12L	116931	broad.mit.edu	37	3	151129190	151129190	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:151129190C>G	uc003eyp.2	+	39	5968	c.5930C>G	c.(5929-5931)TCC>TGC	p.S1977C	MED12L_uc011bnz.1_Intron	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1977	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCCGCACATTCCAACCCCGTG	0.582													13	139					0	0	0	0
KCNAB1	7881	broad.mit.edu	37	3	156175266	156175266	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:156175266G>A	uc003far.2	+	4	446	c.382G>A	c.(382-384)GCC>ACC	p.A128T	KCNAB1_uc011bon.1_Missense_Mutation_p.A128T|KCNAB1_uc003fas.2_Missense_Mutation_p.A117T|KCNAB1_uc003fat.2_Missense_Mutation_p.A110T|KCNAB1_uc010hvt.1_Missense_Mutation_p.A110T|KCNAB1_uc011boo.1_Missense_Mutation_p.A4T	NM_172160	NP_751892	Q14722	KCAB1_HUMAN	potassium voltage-gated channel, shaker-related	128						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			ovary(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			GATGACCATCGCCTATGAAAG	0.473													17	152					0	0	0	0
ECT2	1894	broad.mit.edu	37	3	172474799	172474799	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:172474799G>A	uc003fii.2	+	4	375	c.237G>A	c.(235-237)ATG>ATA	p.M79I	ECT2_uc010hwv.1_Missense_Mutation_p.M110I|ECT2_uc003fih.2_Missense_Mutation_p.M78I|ECT2_uc003fij.1_Missense_Mutation_p.M79I|ECT2_uc003fik.1_Missense_Mutation_p.M79I|ECT2_uc003fil.1_Missense_Mutation_p.M110I	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	79					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			TTGTAAAGATGGAGTCAGTGG	0.328													74	107					0	0	0	0
MAP3K13	9175	broad.mit.edu	37	3	185198087	185198087	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:185198087G>C	uc010hyf.2	+	14	2835	c.2569G>C	c.(2569-2571)GAT>CAT	p.D857H	MAP3K13_uc011brt.1_Missense_Mutation_p.D650H|MAP3K13_uc011bru.1_Missense_Mutation_p.D713H|MAP3K13_uc003fpi.2_Missense_Mutation_p.D857H|MAP3K13_uc010hyg.2_Missense_Mutation_p.D547H	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	857					activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			CTCTGTGTCTGATGGAGAAGA	0.473													16	141					0	0	0	0
SDHAP2	727956	broad.mit.edu	37	3	195391062	195391062	+	Translation_Start_Site	SNP	C	G	G	rs2688562	by1000genomes	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:195391062C>G	uc003fuw.2	+	4	482	c.-712C>G	c.(-714--710)ATCGG>ATGGG		SDHAP2_uc003fut.3_Missense_Mutation_p.R75G|SDHAP2_uc003fuu.3_Missense_Mutation_p.R31G|SDHAP2_uc011btb.1_Translation_Start_Site|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						GCAGGCCCATCGGTGCTGCTG	0.537													4	129					0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195481222	195481222	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:195481222C>T	uc011bto.1	-	20	15266	c.14806G>A	c.(14806-14808)GGG>AGG	p.G4936R	MUC4_uc010hzq.2_5'Flank|MUC4_uc003fuz.2_Missense_Mutation_p.G662R|MUC4_uc003fva.2_Missense_Mutation_p.G544R|MUC4_uc003fvb.2_Missense_Mutation_p.G580R|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Missense_Mutation_p.G580R|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Missense_Mutation_p.G544R|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Missense_Mutation_p.G628R|MUC4_uc011bti.1_Missense_Mutation_p.G628R|MUC4_uc011btj.1_Missense_Mutation_p.G805R|MUC4_uc011btk.1_Missense_Mutation_p.G544R|MUC4_uc011btl.1_Missense_Mutation_p.G573R|MUC4_uc011btm.1_Missense_Mutation_p.G753R|MUC4_uc011btn.1_Missense_Mutation_p.G544R|MUC4_uc003fvo.2_Missense_Mutation_p.G828R|MUC4_uc003fvp.2_Missense_Mutation_p.G777R	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1821					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AAGGTGCCCCCGTCACACTTG	0.652													25	44					0	0	0	0
WHSC2	7469	broad.mit.edu	37	4	1985365	1985365	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr4:1985365G>A	uc003gem.2	-	10	1633	c.1393C>T	c.(1393-1395)CCC>TCC	p.P465S	WHSC2_uc003gek.2_Missense_Mutation_p.P191S|WHSC2_uc003gel.2_Missense_Mutation_p.P379S|WHSC2_uc003gen.2_Missense_Mutation_p.P319S	NM_005663	NP_005654	Q9H3P2	NELFA_HUMAN	Wolf-Hirschhorn syndrome candidate 2 protein	454					multicellular organismal development|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0155)			GCCTTCTCGGGCCGCGTGACT	0.677													11	26					0	0	0	0
C4orf6	10141	broad.mit.edu	37	4	5528029	5528029	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr4:5528029G>A	uc003gii.2	+	2	428	c.253G>A	c.(253-255)GGT>AGT	p.G85S		NM_005750	NP_005741	Q99440	CD006_HUMAN	chromosome 4 open reading frame 6	85					nervous system development						0						GACTGTCTCCGGTGCTCACTC	0.438													6	40					0	0	0	0
EVC2	132884	broad.mit.edu	37	4	5624705	5624705	+	Missense_Mutation	SNP	C	T	T	rs144420242	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr4:5624705C>T	uc003gij.2	-	14	2114	c.2060G>A	c.(2059-2061)CGT>CAT	p.R687H	EVC2_uc011bwb.1_Missense_Mutation_p.R127H|EVC2_uc003gik.2_Missense_Mutation_p.R607H	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	687	Potential.					integral to membrane				large_intestine(3)|ovary(2)	5						CTGCTCCCTACGCTGCTCCCT	0.592													10	29					0	0	0	0
C4orf50	389197	broad.mit.edu	37	4	5961120	5961120	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr4:5961120C>T	uc003git.1	-	7	903	c.813G>A	c.(811-813)CCG>CCA	p.P271P		NM_207405	NP_997288	Q6ZRC1	CD050_HUMAN	hypothetical protein LOC389197	271										pancreas(2)|breast(1)	3						CTAACTCCAGCGGTGATTTAT	0.458													16	100					0	0	0	0
CSN3	1448	broad.mit.edu	37	4	71114847	71114847	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr4:71114847C>G	uc003hfe.3	+	4	278	c.220C>G	c.(220-222)CCA>GCA	p.P74A		NM_005212	NP_005203	P07498	CASK_HUMAN	casein kappa precursor	74						extracellular region	protein binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						AATTAATAATCCATATGTGCC	0.433													8	56					0	0	0	0
FRAS1	80144	broad.mit.edu	37	4	79460452	79460452	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr4:79460452G>A	uc003hlb.2	+	73	11743	c.11303G>A	c.(11302-11304)CGC>CAC	p.R3768H		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3763	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCCTAGGACCGCAATCAGCCA	0.438													14	72					0	0	0	0
GK2	2712	broad.mit.edu	37	4	80327860	80327860	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr4:80327860G>A	uc003hlu.2	-	1	1513	c.1495C>T	c.(1495-1497)CGT>TGT	p.R499C		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	499				R -> C (in Ref. 2; BAF84930).	glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GTGGCATAACGAATTTCACTT	0.478													12	77					0	0	0	0
GRID2	2895	broad.mit.edu	37	4	94377124	94377124	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr4:94377124A>C	uc011cdt.1	+	11	2115	c.1857A>C	c.(1855-1857)CAA>CAC	p.Q619H	GRID2_uc011cdu.1_Missense_Mutation_p.Q524H	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	619	Cytoplasmic (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TTGTACAACAAGGTAAGGAGC	0.353													11	50					0	0	0	0
INTU	27152	broad.mit.edu	37	4	128627931	128627931	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr4:128627931G>A	uc003ifk.1	+	12	2148	c.2078G>A	c.(2077-2079)AGA>AAA	p.R693K	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	693										ovary(1)	1						CCAACATGCAGAAGAACGCTT	0.438													18	85					0	0	0	0
INTU	27152	broad.mit.edu	37	4	128628077	128628077	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr4:128628077G>A	uc003ifk.1	+	12	2294	c.2224G>A	c.(2224-2226)GAA>AAA	p.E742K	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	742										ovary(1)	1						GAAGCAAAGAGAATCTCAGGG	0.473													22	119					0	0	0	0
MAP9	79884	broad.mit.edu	37	4	156281422	156281422	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr4:156281422C>A	uc003ios.2	-	7	1212	c.948G>T	c.(946-948)AAG>AAT	p.K316N	MAP9_uc011cin.1_Missense_Mutation_p.K291N|MAP9_uc010iqa.1_RNA|MAP9_uc003iot.1_Missense_Mutation_p.K315N	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	316	Potential.				cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		CCGCTTTTGCCTTTTCTTCTT	0.378													9	50					2.74318e-10	2.94053e-10	1	0
SEMA5A	9037	broad.mit.edu	37	5	9119159	9119159	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:9119159T>C	uc003jek.2	-	15	2588	c.1876A>G	c.(1876-1878)ACT>GCT	p.T626A		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	626	TSP type-1 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						TGCCTGGGAGTGGGGTTGCTG	0.667													9	38					0	0	0	0
MARCH6	10299	broad.mit.edu	37	5	10407240	10407240	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:10407240G>A	uc003jet.1	+	17	1662	c.1479G>A	c.(1477-1479)CTG>CTA	p.L493L	MARCH6_uc011cmu.1_Silent_p.L445L|MARCH6_uc003jeu.1_Silent_p.L191L|MARCH6_uc011cmv.1_Silent_p.L388L	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	493	Helical; (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						TTGTCCTCCTGATGCTTTGGC	0.408													26	293					0	0	0	0
PRDM9	56979	broad.mit.edu	37	5	23527576	23527576	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:23527576T>A	uc003jgo.2	+	11	2561	c.2379T>A	c.(2377-2379)AGT>AGA	p.S793R		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	793	C2H2-type 11.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ACCTCCTCAGTCACCAGAGGA	0.562										HNSCC(3;0.000094)			5	154					0	0	0	0
TARS	6897	broad.mit.edu	37	5	33448677	33448677	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:33448677C>T	uc003jhy.2	+	3	464	c.169C>T	c.(169-171)CGT>TGT	p.R57C	TARS_uc011cob.1_Missense_Mutation_p.R45C|TARS_uc010iup.1_Translation_Start_Site|TARS_uc011coc.1_Missense_Mutation_p.R45C|TARS_uc003jhz.2_Intron|TARS_uc011cod.1_Translation_Start_Site	NM_152295	NP_689508	P26639	SYTC_HUMAN	threonyl-tRNA synthetase	57					threonyl-tRNA aminoacylation	cytosol	ATP binding|protein homodimerization activity|threonine-tRNA ligase activity			ovary(2)	2					L-Threonine(DB00156)	TATTTACACACGTCTTGAGAT	0.343													8	85					0	0	0	0
SLC1A3	6507	broad.mit.edu	37	5	36686248	36686248	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:36686248G>A	uc003jkj.3	+	10	1982	c.1506G>A	c.(1504-1506)CTG>CTA	p.L502L	SLC1A3_uc011cox.1_Silent_p.L395L|SLC1A3_uc010iuy.2_Silent_p.L457L	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	502					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	GACATGAACTGAAGAACAGAG	0.498													20	198					0	0	0	0
C5orf42	65250	broad.mit.edu	37	5	37108457	37108457	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:37108457G>A	uc011cpa.1	-	51	9586	c.9355C>T	c.(9355-9357)CCC>TCC	p.P3119S	C5orf42_uc003jko.1_Missense_Mutation_p.P150S|C5orf42_uc003jkp.1_RNA|C5orf42_uc011coy.1_Missense_Mutation_p.P1637S|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.P2212S	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	3119										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			ATCGTCCAGGGACTCACCACA	0.423													6	91					0	0	0	0
MAST4	375449	broad.mit.edu	37	5	66398375	66398375	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:66398375C>T	uc003jut.1	+	8	583	c.515C>T	c.(514-516)TCT>TTT	p.S172F	MAST4_uc003jus.2_Missense_Mutation_p.S172F|MAST4_uc003juu.1_Missense_Mutation_p.S182F|MAST4_uc011cra.1_Missense_Mutation_p.S155F|MAST4_uc010ixa.2_RNA|MAST4_uc003juv.2_Missense_Mutation_p.S167F|MAST4_uc003juw.2_Missense_Mutation_p.S167F	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	364						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CCTGGACGTTCTCCCGCCTGC	0.373													16	59					0	0	0	0
TAF9	6880	broad.mit.edu	37	5	68660814	68660814	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:68660814C>T	uc003jwc.1	-	2	1083	c.751G>A	c.(751-753)GAT>AAT	p.D251N	TAF9_uc003jwa.2_Intron|TAF9_uc003jwb.2_Intron|TAF9_uc003jwd.1_Missense_Mutation_p.D251N|TAF9_uc003jwe.1_Missense_Mutation_p.D251N|TAF9_uc003jwf.1_Missense_Mutation_p.D251N	NM_003187	NP_003178	Q16594	TAF9_HUMAN	TAF9 RNA polymerase II, TATA box binding	251	Poly-Asp.				histone H3 acetylation|negative regulation of apoptosis|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of cell growth|positive regulation of response to cytokine stimulus|positive regulation of transcription from RNA polymerase II promoter|response to interleukin-1|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	MLL1 complex|PCAF complex|pre-snoRNP complex|STAGA complex|transcription factor TFIID complex|transcription factor TFTC complex	activating transcription factor binding|C2H2 zinc finger domain binding|p53 binding|transcription coactivator activity|transcription regulatory region DNA binding				0		Lung NSC(167;7.26e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.1e-56)|Epithelial(20;9.54e-53)|all cancers(19;2.2e-48)|Lung(70;0.0176)		tcatcatcatcatcttcaCGT	0.249													7	49					0	0	0	0
DMGDH	29958	broad.mit.edu	37	5	78338269	78338269	+	Nonsense_Mutation	SNP	G	A	A	rs143021634	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:78338269G>A	uc003kfs.2	-	7	1036	c.1030C>T	c.(1030-1032)CGA>TGA	p.R344*	DMGDH_uc011cte.1_Nonsense_Mutation_p.R194*|DMGDH_uc011ctf.1_Nonsense_Mutation_p.R143*|DMGDH_uc011ctg.1_Intron	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	344					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		TCCATGATTCGATCTAGATCA	0.423													11	64					0	0	0	0
ANKRD32	84250	broad.mit.edu	37	5	94014548	94014548	+	Silent	SNP	A	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:94014548A>G	uc003kkr.3	+	15	1943	c.1863A>G	c.(1861-1863)GGA>GGG	p.G621G	ANKRD32_uc003kks.2_5'UTR	NM_032290	NP_115666	Q9BQI6	ANR32_HUMAN	ankyrin repeat domain 32	621										ovary(2)	2		all_cancers(142;1.51e-09)|all_epithelial(76;4.68e-12)|all_lung(232;5.94e-05)|Ovarian(174;0.000953)|Lung NSC(167;0.00105)|Colorectal(57;0.122)|Lung SC(612;0.152)		all cancers(79;3.88e-18)		TATTGGCTGGAATTCTTGGAG	0.308													10	54					0	0	0	0
LNPEP	4012	broad.mit.edu	37	5	96314937	96314937	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:96314937C>G	uc003kmv.1	+	2	629	c.115C>G	c.(115-117)CTA>GTA	p.L39V	LNPEP_uc003kmw.1_Missense_Mutation_p.L25V	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	39	Cytoplasmic (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		TTTACATCCTCTAGAGCCTGA	0.498													11	74					0	0	0	0
FSTL4	23105	broad.mit.edu	37	5	132652228	132652228	+	Missense_Mutation	SNP	G	A	A	rs139711882	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:132652228G>A	uc003kyn.1	-	5	744	c.526C>T	c.(526-528)CGC>TGC	p.R176C		NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	176	EF-hand.					extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ACCAGGAGGCGCTTCTGGGAG	0.587											OREG0016777	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	38					0	0	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140769023	140769023	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:140769023C>T	uc003lkc.1	+	1	1572	c.1572C>T	c.(1570-1572)CGC>CGT	p.R524R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.R524R	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	524	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCAGCTGCGCGCCTTCGAAC	0.672													21	39					0	0	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140769043	140769043	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:140769043A>T	uc003lkc.1	+	1	1592	c.1592A>T	c.(1591-1593)CAG>CTG	p.Q531L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.Q531L	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	531	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCACACTGCAGGCCCGCGAC	0.677													18	31					0	0	0	0
TTC1	7265	broad.mit.edu	37	5	159437549	159437549	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:159437549C>T	uc003lxu.2	+	2	64	c.14C>T	c.(13-15)TCA>TTA	p.S5L		NM_003314	NP_003305	Q99614	TTC1_HUMAN	tetratricopeptide repeat domain 1	5					protein folding		unfolded protein binding			skin(1)	1	Renal(175;0.00196)	all_hematologic(541;0.00014)|Breast(839;0.0101)|all_neural(177;0.0281)|Medulloblastoma(196;0.0425)|Lung NSC(249;0.119)|all_lung(500;0.163)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	Epithelial(171;8.37e-05)|all cancers(165;0.000694)|OV - Ovarian serous cystadenocarcinoma(192;0.0402)		GGGGAGAAGTCAGAGAACTGT	0.463													7	44					0	0	0	0
OR2H2	7932	broad.mit.edu	37	6	29556072	29556072	+	Silent	SNP	T	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr6:29556072T>C	uc003nmr.1	+	1	390	c.351T>C	c.(349-351)GCT>GCC	p.A117A	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	117	Helical; Name=3; (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAGTGATGGCTTTTGATCGCT	0.587													3	86					0	0	0	0
PACSIN1	29993	broad.mit.edu	37	6	34499521	34499521	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr6:34499521C>T	uc003ojo.2	+	9	1388	c.1182C>T	c.(1180-1182)TAC>TAT	p.Y394Y	PACSIN1_uc003ojp.2_Silent_p.Y394Y	NM_020804	NP_065855	Q9BY11	PACN1_HUMAN	protein kinase C and casein kinase substrate in	394	SH3.				endocytosis		protein kinase activity				0						GGGCACTCTACGACTATGACG	0.647													30	135					0	0	0	0
ZNF76	7629	broad.mit.edu	37	6	35260716	35260716	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr6:35260716G>A	uc003oki.1	+	11	1429	c.1224G>A	c.(1222-1224)TCG>TCA	p.S408S	ZNF76_uc003okj.1_Silent_p.S408S	NM_003427	NP_003418	P36508	ZNF76_HUMAN	zinc finger protein 76 (expressed in testis)	408					regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTACCTTTCGGAGGTGAAGG	0.612													55	55					0	0	0	0
CPNE5	57699	broad.mit.edu	37	6	36714277	36714277	+	Missense_Mutation	SNP	C	T	T	rs150078502	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr6:36714277C>T	uc003omr.1	-	16	1163	c.1096G>A	c.(1096-1098)GTC>ATC	p.V366I	CPNE5_uc003omp.1_Missense_Mutation_p.V74I|CPNE5_uc010jwn.1_Missense_Mutation_p.V16I|CPNE5_uc003omq.1_Missense_Mutation_p.V16I	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	366	VWFA.									skin(1)	1						ATCTCTCCGACGGCAGTCAGC	0.622													4	59					0	0	0	0
ZNF292	23036	broad.mit.edu	37	6	87966228	87966228	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr6:87966228G>A	uc003plm.3	+	8	2922	c.2881G>A	c.(2881-2883)GGC>AGC	p.G961S		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	961					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		AACTGTGGAAGGCAGTGGTGA	0.428													18	47					0	0	0	0
C6orf165	154313	broad.mit.edu	37	6	88126412	88126412	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr6:88126412G>A	uc003plv.2	+	6	590	c.498G>A	c.(496-498)CAG>CAA	p.Q166Q	C6orf165_uc003plw.2_5'UTR|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Silent_p.Q166Q	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	166										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		TTTTTCCTCAGGCAGAGCTTG	0.338													25	12					0	0	0	0
GOPC	57120	broad.mit.edu	37	6	117890830	117890830	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr6:117890830C>T	uc003pxu.2	-	7	1212	c.982G>A	c.(982-984)GGA>AGA	p.G328R	GOPC_uc003pxq.1_Missense_Mutation_p.G101R|DCBLD1_uc003pxs.2_3'UTR|GOPC_uc003pxv.2_Missense_Mutation_p.G320R	NM_020399	NP_065132	Q9HD26	GOPC_HUMAN	golgi associated PDZ and coiled-coil motif	328	PDZ.				apical protein localization|cytoplasmic sequestering of CFTR protein|ER to Golgi vesicle-mediated transport|Golgi to plasma membrane transport|protein homooligomerization|protein transport	cell junction|dendrite|Golgi membrane|postsynaptic density|postsynaptic membrane|trans-Golgi network transport vesicle	cystic fibrosis transmembrane conductance regulator binding			ovary(1)	1		all_cancers(87;0.00844)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0363)|OV - Ovarian serous cystadenocarcinoma(136;0.0821)|all cancers(137;0.0976)		TGCAGCCCTCCGCATCTATCA	0.458			O	ROS1	glioblastoma								31	96					0	0	0	0
EYA4	2070	broad.mit.edu	37	6	133783571	133783571	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr6:133783571C>A	uc003qec.3	+	8	994	c.536C>A	c.(535-537)ACA>AAA	p.T179K	EYA4_uc011ecq.1_Missense_Mutation_p.T125K|EYA4_uc011ecr.1_Missense_Mutation_p.T125K|EYA4_uc003qed.3_Missense_Mutation_p.T179K|EYA4_uc003qee.3_Missense_Mutation_p.T156K|EYA4_uc011ecs.1_Missense_Mutation_p.T179K|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	179					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		GCCGTCTACACAGCCTACTCA	0.507													9	55					0.000274275	0.000281841	1	0
AMZ1	155185	broad.mit.edu	37	7	2752042	2752042	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr7:2752042A>C	uc003smr.1	+	7	1388	c.1027A>C	c.(1027-1029)ACC>CCC	p.T343P	AMZ1_uc003sms.1_Missense_Mutation_p.H286P|AMZ1_uc011jwa.1_Missense_Mutation_p.T92P	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	343							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		GTGGGAGGACACCCCGCCTGC	0.672													3	8					0	0	0	0
SDK1	221935	broad.mit.edu	37	7	4272924	4272924	+	Silent	SNP	G	A	A	rs144472783		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr7:4272924G>A	uc003smx.2	+	41	6004	c.5865G>A	c.(5863-5865)CCG>CCA	p.P1955P	SDK1_uc010kso.2_Silent_p.P1211P|SDK1_uc003smy.2_Silent_p.P442P|SDK1_uc003smz.2_Silent_p.P15P	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1955	Fibronectin type-III 13.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		AGGACATCCCGCGGAGCGCCA	0.597													10	50					0	0	0	0
C7orf31	136895	broad.mit.edu	37	7	25175685	25175685	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr7:25175685G>A	uc003sxn.1	-	10	2240	c.1679C>T	c.(1678-1680)TCA>TTA	p.S560L	C7orf31_uc003sxm.1_Missense_Mutation_p.S402L	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	560											0						TTCTAGAATTGATTTATGGAA	0.403													16	83					0	0	0	0
STARD3NL	83930	broad.mit.edu	37	7	38259205	38259205	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr7:38259205T>G	uc003tfr.2	+	7	741	c.593T>G	c.(592-594)CTT>CGT	p.L198R	STARD3NL_uc003tfs.2_Missense_Mutation_p.L198R|STARD3NL_uc003tft.2_Missense_Mutation_p.L180R	NM_032016	NP_114405	O95772	MENTO_HUMAN	MLN64 N-terminal homolog	198	Cytoplasmic (Potential).|MENTAL.					integral to membrane|late endosome membrane				ovary(1)	1						AGGGCAGCACTTATACCTGGT	0.418													8	84					0	0	0	0
MYL7	58498	broad.mit.edu	37	7	44179945	44179945	+	Missense_Mutation	SNP	G	A	A	rs142668114		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr7:44179945G>A	uc003tkg.2	-	4	287	c.275C>T	c.(274-276)ACG>ATG	p.T92M		NM_021223	NP_067046	Q01449	MLRA_HUMAN	myosin light chain 2a	92					actin filament-based movement|smooth muscle contraction	A band|myosin complex	ATPase activity, coupled|calcium ion binding|microfilament motor activity				0						CCCAAAGAGCGTGAGGAAGAC	0.527													10	71					0	0	0	0
CCT6A	908	broad.mit.edu	37	7	56124052	56124052	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr7:56124052G>C	uc003trl.1	+	5	723	c.559G>C	c.(559-561)GAT>CAT	p.D187H	PSPH_uc003trj.2_Intron|CCT6A_uc003trm.1_Missense_Mutation_p.D142H|CCT6A_uc011kcu.1_Missense_Mutation_p.D156H	NM_001762	NP_001753	P40227	TCPZ_HUMAN	chaperonin containing TCP1, subunit 6A isoform	187					'de novo' posttranslational protein folding	cytosol	ATP binding|unfolded protein binding			upper_aerodigestive_tract(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TGAACCTATTGATCTCTTCAT	0.343													10	68					0	0	0	0
SLC25A40	55972	broad.mit.edu	37	7	87476268	87476268	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr7:87476268G>A	uc003uje.2	-	8	978	c.627C>T	c.(625-627)TTC>TTT	p.F209F		NM_018843	NP_061331	Q8TBP6	S2540_HUMAN	mitochondrial carrier family protein	209	Helical; Name=4; (Potential).|Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			haematopoietic_and_lymphoid_tissue(1)	1	Esophageal squamous(14;0.00202)					TCCTACCTGAGAAAGGTACAT	0.378													11	56					0	0	0	0
PEX1	5189	broad.mit.edu	37	7	92136441	92136441	+	Splice_Site	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr7:92136441C>T	uc003uly.2	-	10	1767	c.1671_splice	c.e10-1	p.G557_splice	PEX1_uc011khr.1_Splice_Site_p.G349_splice|PEX1_uc010ley.2_Splice_Site_p.G557_splice|PEX1_uc011khs.1_Splice_Site_p.G235_splice|PEX1_uc011kht.1_Splice_Site	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1						microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			ATTCACTCCTCTGTAAAAAAT	0.403													4	21					0	0	0	0
COG5	10466	broad.mit.edu	37	7	107053006	107053006	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr7:107053006C>T	uc003ved.2	-	7	1228	c.703G>A	c.(703-705)GCC>ACC	p.A235T	COG5_uc003vec.2_Missense_Mutation_p.A235T|COG5_uc003vee.2_Missense_Mutation_p.A235T	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	235					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						TCAAGTCGGGCTCTTGCAATA	0.328													18	51					0	0	0	0
WNT16	51384	broad.mit.edu	37	7	120979112	120979112	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr7:120979112G>C	uc003vjw.2	+	4	1068	c.811G>C	c.(811-813)GAA>CAA	p.E271Q	WNT16_uc003vjv.2_Missense_Mutation_p.E261Q|WNT16_uc010lkl.2_Missense_Mutation_p.E55Q	NM_057168	NP_476509	Q9UBV4	WNT16_HUMAN	wingless-type MMTV integration site family,	271					anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|keratinocyte differentiation|keratinocyte proliferation|negative regulation of cell death|optic cup formation involved in camera-type eye development|oxidative stress-induced premature senescence|positive regulation of gene expression|positive regulation of JNK cascade|positive regulation of phosphatidylinositol 3-kinase cascade|replicative senescence|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			lung(2)|ovary(2)|large_intestine(1)	5	all_neural(327;0.117)					GCGCAGGAGAGAAAAAGATCA	0.368													6	24					0	0	0	0
PRKAG2	51422	broad.mit.edu	37	7	151261269	151261269	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr7:151261269C>T	uc003wkk.2	-	14	2090	c.1479G>A	c.(1477-1479)ACG>ACA	p.T493T	PRKAG2_uc003wki.2_Silent_p.T252T|PRKAG2_uc011kvl.1_Silent_p.T368T|PRKAG2_uc003wkj.2_Silent_p.T449T|PRKAG2_uc003wkl.2_Silent_p.T41T	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	493					ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		CCTGGGTCACCGTGATATCTA	0.398													5	91					0	0	0	0
SFTPC	6440	broad.mit.edu	37	8	22019379	22019379	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr8:22019379C>T	uc003xax.3	+	1	196	c.38C>T	c.(37-39)CCG>CTG	p.P13L	SFTPC_uc003xaw.3_Missense_Mutation_p.P62L|SFTPC_uc011kza.1_Missense_Mutation_p.P13L|SFTPC_uc003xaz.2_Missense_Mutation_p.P13L|SFTPC_uc003xay.3_Missense_Mutation_p.P13L	NM_003018	NP_003009	P11686	PSPC_HUMAN	surfactant protein C precursor	13					respiratory gaseous exchange	extracellular space					0				Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		ATGGAGAGCCCGCCGgtgagt	0.433													13	53					0	0	0	0
SLC39A14	23516	broad.mit.edu	37	8	22266000	22266000	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr8:22266000G>A	uc003xbq.3	+	3	623	c.448G>A	c.(448-450)GCT>ACT	p.A150T	SLC39A14_uc011kzg.1_Missense_Mutation_p.A150T|SLC39A14_uc003xbp.3_Missense_Mutation_p.A150T|SLC39A14_uc011kzh.1_Missense_Mutation_p.A150T	NM_001128431	NP_001121903	Q15043	S39AE_HUMAN	solute carrier family 39 (zinc transporter),	150	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lamellipodium|plasma membrane	zinc ion transmembrane transporter activity				0				Colorectal(74;0.019)|COAD - Colon adenocarcinoma(73;0.0731)		GCGGCCAAGCGCTGTTGAAGG	0.642													4	19					0	0	0	0
PRKDC	5591	broad.mit.edu	37	8	48798673	48798673	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr8:48798673C>T	uc003xqi.2	-	37	4665	c.4608G>A	c.(4606-4608)GCG>GCA	p.A1536A	PRKDC_uc003xqj.2_Silent_p.A1536A|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1536	Interaction with C1D.|Leucine-zipper.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TGGACAGCACCGCTGGGTTCA	0.527								NHEJ					17	23					0	0	0	0
XKR4	114786	broad.mit.edu	37	8	56436657	56436657	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr8:56436657G>C	uc003xsf.2	+	3	1856	c.1824G>C	c.(1822-1824)GAG>GAC	p.E608D		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	608						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CAGCATGGGAGAGACATGTTT	0.488													7	28					0	0	0	0
CHD7	55636	broad.mit.edu	37	8	61765187	61765187	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr8:61765187G>A	uc003xue.2	+	30	6502	c.6025G>A	c.(6025-6027)GAG>AAG	p.E2009K		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2009					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AAAATCTGATGAGAGTTTGGA	0.438													9	22					0	0	0	0
NACAP1	83955	broad.mit.edu	37	8	102381483	102381483	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr8:102381483C>T	uc003ykc.1	+	1	363	c.346C>T	c.(346-348)CGG>TGG	p.R116W	NACAP1_uc010mbs.1_RNA	NR_002182				SubName: Full=NACAP1 protein;												0						GAGCCCGCTTCGGATACCTAC	0.438													16	84					0	0	0	0
KIFC2	90990	broad.mit.edu	37	8	145698053	145698053	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr8:145698053C>T	uc003zcz.2	+	16	1890	c.1825C>T	c.(1825-1827)CGC>TGC	p.R609C	KIFC2_uc003zda.2_5'UTR	NM_145754	NP_665697	Q96AC6	KIFC2_HUMAN	kinesin family member C2	609	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GCTGACGCTGCGCGCGGCGTC	0.721													4	27					0	0	0	0
ANKRD19	138649	broad.mit.edu	37	9	95576181	95576181	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr9:95576181G>T	uc011lua.1	+	3	401	c.347G>T	c.(346-348)TGT>TTT	p.C116F	ANKRD19_uc004ass.2_RNA|ANKRD19_uc004asr.3_RNA					SubName: Full=ANKRD19 protein; SubName: Full=cDNA FLJ77364, highly similar to Homo sapiens ankyrin repeat domain 19 (ANKRD19), mRNA; SubName: Full=Ankyrin repeat domain 19, isoform CRA_a;												0						GAAGAGGCTTGTGCCATTATT	0.398													6	12					5.16669e-11	5.61924e-11	1	0
PHF2	5253	broad.mit.edu	37	9	96435940	96435940	+	Missense_Mutation	SNP	G	A	A	rs145764244	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr9:96435940G>A	uc004aub.2	+	18	2569	c.2422G>A	c.(2422-2424)GAC>AAC	p.D808N	PHF2_uc011lug.1_Missense_Mutation_p.D691N|PHF2_uc004auc.2_Missense_Mutation_p.D228N	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	808					liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		GCAGGCCTCCGACTCCTGCCT	0.667													8	55					0	0	0	0
GSN	2934	broad.mit.edu	37	9	124073041	124073041	+	Missense_Mutation	SNP	G	A	A	rs144099356	by1000genomes	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr9:124073041G>A	uc004blf.1	+	4	645	c.584G>A	c.(583-585)CGG>CAG	p.R195Q	GSN_uc004bld.1_Missense_Mutation_p.R144Q|GSN_uc010mvq.1_Missense_Mutation_p.R155Q|GSN_uc010mvr.1_Missense_Mutation_p.R155Q|GSN_uc010mvu.1_Missense_Mutation_p.R144Q|GSN_uc010mvt.1_Missense_Mutation_p.R144Q|GSN_uc010mvs.1_Missense_Mutation_p.R144Q|GSN_uc004ble.1_Missense_Mutation_p.R144Q|GSN_uc010mvv.1_Missense_Mutation_p.R144Q|GSN_uc011lyh.1_Missense_Mutation_p.R161Q|GSN_uc011lyi.1_Missense_Mutation_p.R144Q|GSN_uc011lyj.1_Missense_Mutation_p.R168Q|GSN_uc004blg.1_5'Flank	NM_000177	NP_000168	P06396	GELS_HUMAN	gelsolin isoform a precursor	195	Polyphosphoinositide binding (By similarity).				actin filament polymerization|actin filament severing|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|cilium morphogenesis	actin cytoskeleton|cytosol	actin binding|calcium ion binding|protein binding			breast(2)|ovary(1)	3						GTCAAAGGGCGGCGTGTGGTC	0.587													8	47					0	0	0	0
FCN2	2220	broad.mit.edu	37	9	137779204	137779204	+	Silent	SNP	G	A	A	rs150154280	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr9:137779204G>A	uc004cfg.1	+	8	895	c.885G>A	c.(883-885)TCG>TCA	p.S295S	FCN2_uc004cfh.1_Silent_p.S257S	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	295	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		ACTGGAAGTCGGGGAAAGGAT	0.537													45	16					0	0	0	0
KIAA0649	9858	broad.mit.edu	37	9	138376726	138376726	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr9:138376726G>C	uc004cfr.1	+	4	919	c.370G>C	c.(370-372)GAC>CAC	p.D124H		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	124						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		GCTAGATTCAGACAGTGATGA	0.612													71	49					0	0	0	0
SHROOM2	357	broad.mit.edu	37	X	9863269	9863269	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chrX:9863269G>A	uc004csu.1	+	4	1411	c.1321G>A	c.(1321-1323)GAC>AAC	p.D441N		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	441					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				CCTCTGTGCTGACAGCCTTGG	0.652													18	16					0	0	0	0
SCML2	10389	broad.mit.edu	37	X	18283829	18283829	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chrX:18283829A>G	uc004cyl.2	-	8	981	c.824T>C	c.(823-825)TTA>TCA	p.L275S	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_Missense_Mutation_p.L275S|SCML2_uc011miz.1_Missense_Mutation_p.L209S|SCML2_uc010nfc.2_Missense_Mutation_p.L11S	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	275					anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					CTGTGTTGGTAATATTAGAGT	0.418													13	27					0	0	0	0
CXorf58	254158	broad.mit.edu	37	X	23928433	23928433	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chrX:23928433C>T	uc004daz.1	+	2	358	c.14C>T	c.(13-15)TCA>TTA	p.S5L	APOO_uc004dax.2_5'Flank|APOO_uc004day.3_5'Flank|CXorf58_uc011mju.1_Missense_Mutation_p.S5L	NM_152761	NP_689974	Q96LI9	CX058_HUMAN	hypothetical protein LOC254158	5											0						AATCGTTCCTCAAATGTACCA	0.348													7	10					0	0	0	0
BRS3	680	broad.mit.edu	37	X	135572633	135572633	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chrX:135572633C>T	uc004ezv.1	+	2	925	c.776C>T	c.(775-777)GCC>GTC	p.A259V		NM_001727	NP_001718	P32247	BRS3_HUMAN	bombesin-like receptor 3	259	Cytoplasmic (Potential).				adult feeding behavior|glucose metabolic process|regulation of blood pressure	integral to membrane|plasma membrane	bombesin receptor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CAAAGCCATGCCCGTAAGCAG	0.388													3	42					0	0	0	0
AFF2	2334	broad.mit.edu	37	X	147924495	147924495	+	Silent	SNP	G	A	A	rs149177157	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chrX:147924495G>A	uc004fcp.2	+	6	1658	c.1179G>A	c.(1177-1179)TCG>TCA	p.S393S	AFF2_uc004fco.2_Silent_p.S360S|AFF2_uc004fcq.2_Silent_p.S389S|AFF2_uc004fcr.2_Silent_p.S360S|AFF2_uc011mxb.1_Silent_p.S364S|AFF2_uc004fcs.2_Silent_p.S360S|AFF2_uc011mxc.1_Silent_p.S34S	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	393					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					TATAGGAATCGCAGCATCTGA	0.333													41	23					0	0	0	0
SLC45A1	50651	broad.mit.edu	37	1	8390837	8390837	+	Silent	SNP	C	T	T	rs149921947	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:8390837C>T	uc001apb.2	+	4	1284	c.1284C>T	c.(1282-1284)TCC>TCT	p.S428S	SLC45A1_uc001apc.2_Silent_p.S126S	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	428					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		CCCTGACCTCCGGCTGTGACG	0.657													12	82					0	0	0	0
TARDBP	23435	broad.mit.edu	37	1	11080498	11080498	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:11080498G>C	uc001art.2	+	5	690	c.556G>C	c.(556-558)GAG>CAG	p.E186Q	TARDBP_uc010oap.1_Missense_Mutation_p.E70Q	NM_007375	NP_031401	Q13148	TADBP_HUMAN	TAR DNA binding protein	186	RRM 1.				3'-UTR-mediated mRNA stabilization|cell death|mRNA processing|negative regulation by host of viral transcription|RNA splicing|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|mRNA 3'-UTR binding|nucleotide binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0578)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.37e-07)|COAD - Colon adenocarcinoma(227;7.38e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)		AAGCCAAGATGAGCCTTTGAG	0.398													11	74					0	0	0	0
CROCCL1	84809	broad.mit.edu	37	1	16974010	16974010	+	5'Flank	SNP	G	C	C	rs139681601	by1000genomes	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:16974010G>C	uc001azg.1	-						CROCCL1_uc001azi.1_5'Flank|MST1P2_uc009vow.2_RNA|MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						TGACGGCTCCGAGCGGCCATG	0.627													4	24					0	0	0	0
PINK1	65018	broad.mit.edu	37	1	20975048	20975048	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:20975048G>A	uc001bdm.2	+	6	1268	c.1174G>A	c.(1174-1176)GAG>AAG	p.E392K	PINK1_uc001bdn.2_Missense_Mutation_p.E85K	NM_032409	NP_115785	Q9BXM7	PINK1_HUMAN	PTEN induced putative kinase 1 precursor	392	Protein kinase.|Cytoplasmic (Potential).				cell death|intracellular protein kinase cascade|mitochondrion degradation|peptidyl-serine phosphorylation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of release of cytochrome c from mitochondria|regulation of protein complex assembly|regulation of protein ubiquitination|response to stress	cytosol|integral to membrane|mitochondrial outer membrane	ATP binding|C3HC4-type RING finger domain binding|calcium-dependent protein kinase activity|magnesium ion binding|protein serine/threonine kinase activity|ubiquitin protein ligase binding			ovary(2)|central_nervous_system(1)	3		all_lung(284;2.72e-05)|Lung NSC(340;2.94e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.21e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000146)|Kidney(64;0.000182)|GBM - Glioblastoma multiforme(114;0.000497)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CCTGGCTGATGAGAGCATCGG	0.612													3	29					0	0	0	0
HP1BP3	50809	broad.mit.edu	37	1	21103166	21103166	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:21103166C>T	uc001bdw.1	-	4	414	c.274G>A	c.(274-276)GAG>AAG	p.E92K	HP1BP3_uc001bdv.1_Missense_Mutation_p.E54K|HP1BP3_uc010odh.1_Missense_Mutation_p.E54K|HP1BP3_uc001bdy.1_Missense_Mutation_p.E92K|HP1BP3_uc001bdz.2_RNA|HP1BP3_uc001bea.2_Missense_Mutation_p.E91K|HP1BP3_uc001beb.2_Missense_Mutation_p.E92K	NM_016287	NP_057371	Q5SSJ5	HP1B3_HUMAN	HP1-BP74	92					nucleosome assembly	nucleosome|nucleus	DNA binding			central_nervous_system(1)|skin(1)	2		all_lung(284;6.55e-06)|Lung NSC(340;6.59e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.26e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00015)|GBM - Glioblastoma multiforme(114;0.000521)|Kidney(64;0.000529)|STAD - Stomach adenocarcinoma(196;0.00311)|KIRC - Kidney renal clear cell carcinoma(64;0.00687)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.201)		TGCTCTGCCTCACTCGAAGTA	0.423													21	102					0	0	0	0
SRRM1	10250	broad.mit.edu	37	1	24978971	24978971	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:24978971G>C	uc001bjm.2	+	7	996	c.772G>C	c.(772-774)GAA>CAA	p.E258Q	SRRM1_uc010oel.1_Missense_Mutation_p.E258Q|SRRM1_uc009vrh.1_Missense_Mutation_p.E219Q|SRRM1_uc009vri.1_Missense_Mutation_p.E175Q|SRRM1_uc010oem.1_RNA	NM_005839	NP_005830	Q8IYB3	SRRM1_HUMAN	serine/arginine repetitive matrix 1	258	Pro-rich.|Arg-rich.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nuclear matrix|nuclear speck	DNA binding|protein binding|RNA binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;1.01e-24)|Colorectal(126;5.95e-08)|COAD - Colon adenocarcinoma(152;3.24e-06)|GBM - Glioblastoma multiforme(114;0.000148)|BRCA - Breast invasive adenocarcinoma(304;0.00177)|KIRC - Kidney renal clear cell carcinoma(1967;0.00348)|STAD - Stomach adenocarcinoma(196;0.00483)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		AGAGCCTAAAGAACCTTCTCC	0.443													3	25					0	0	0	0
TIE1	7075	broad.mit.edu	37	1	43778831	43778831	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:43778831C>T	uc001ciu.2	+	13	2032	c.1953C>T	c.(1951-1953)CAC>CAT	p.H651H	TIE1_uc010okd.1_Silent_p.H651H|TIE1_uc010oke.1_Silent_p.H606H|TIE1_uc009vwq.2_Silent_p.H607H|TIE1_uc010okf.1_Silent_p.H296H|TIE1_uc010okg.1_Silent_p.H296H	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	651	Fibronectin type-III 3.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GACACCTCCACGCCCAGGCCC	0.637													6	45					0	0	0	0
ST3GAL3	6487	broad.mit.edu	37	1	44303969	44303969	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:44303969G>A	uc001ckc.2	+	5	465	c.288G>A	c.(286-288)ACG>ACA	p.T96T	ST3GAL3_uc009vwu.1_RNA|ST3GAL3_uc010okj.1_RNA|ST3GAL3_uc001cjz.2_Silent_p.T111T|ST3GAL3_uc001cka.2_Silent_p.T80T|ST3GAL3_uc001ckb.2_Silent_p.T165T|ST3GAL3_uc001ckd.2_Silent_p.T150T|ST3GAL3_uc001cke.2_Silent_p.T80T|ST3GAL3_uc001ckf.2_Silent_p.T134T|ST3GAL3_uc001ckg.2_Silent_p.T96T|ST3GAL3_uc001ckh.2_Silent_p.T111T|ST3GAL3_uc001cki.2_Silent_p.T96T|ST3GAL3_uc009vwv.2_Silent_p.T96T|ST3GAL3_uc001ckj.2_RNA|ST3GAL3_uc009vww.2_RNA|ST3GAL3_uc001ckk.2_Intron|ST3GAL3_uc009vwy.2_Silent_p.T2T|ST3GAL3_uc009vwx.2_RNA|ST3GAL3_uc001ckm.2_Silent_p.T95T|ST3GAL3_uc001ckl.2_Silent_p.T96T|ST3GAL3_uc009vwz.2_5'UTR|ST3GAL3_uc001ckn.2_RNA|ST3GAL3_uc001ckp.2_Silent_p.T95T|ST3GAL3_uc001cko.2_Silent_p.T80T|ST3GAL3_uc009vxa.2_Intron|ST3GAL3_uc001ckq.2_Silent_p.T80T|ST3GAL3_uc001ckr.2_Intron|ST3GAL3_uc009vxb.2_Silent_p.T80T	NM_006279	NP_006270	Q11203	SIAT6_HUMAN	sialyltransferase 6 isoform j	96	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	N-acetyllactosaminide alpha-2,3-sialyltransferase activity			ovary(3)	3	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0518)				CCTTGATGACGGCCATCTTCC	0.542													28	170					0	0	0	0
CDCP2	200008	broad.mit.edu	37	1	54610233	54610233	+	Silent	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:54610233C>G	uc001cwv.1	-	2	1181	c.333G>C	c.(331-333)CCG>CCC	p.P111P		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	111	CUB 1.					extracellular region				ovary(1)	1						TGAAGGGCGGCGGGGGCACCT	0.587													9	33					0	0	0	0
LRRC40	55631	broad.mit.edu	37	1	70618219	70618219	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:70618219C>G	uc001der.1	-	12	1388	c.1336G>C	c.(1336-1338)GAA>CAA	p.E446Q		NM_017768	NP_060238	Q9H9A6	LRC40_HUMAN	leucine rich repeat containing 40	446	LRR 14.									ovary(1)	1						TCCTTCAGTTCTACCATCCTG	0.323													7	35					0	0	0	0
AK5	26289	broad.mit.edu	37	1	77806120	77806120	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:77806120G>C	uc001dhn.2	+	6	1015	c.758G>C	c.(757-759)AGA>ACA	p.R253T	AK5_uc001dho.2_Missense_Mutation_p.R227T	NM_174858	NP_777283	Q9Y6K8	KAD5_HUMAN	adenylate kinase 5 isoform 1	253					ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	adenylate kinase activity|ATP binding|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			skin(1)	1						CTCAAAGAAAGATTACTGAAG	0.458													11	80					0	0	0	0
HSD3B2	3284	broad.mit.edu	37	1	119964589	119964589	+	Silent	SNP	G	A	A	rs114527791	by1000genomes	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:119964589G>A	uc001ehs.2	+	3	1238	c.465G>A	c.(463-465)CCG>CCA	p.P155P	HSD3B2_uc001eht.2_Silent_p.P155P|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	155			P -> L (in AH2; nonsalt-wasting form).		androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	CTCCATACCCGTACAGCAAAA	0.498													21	74					0	0	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145473612	145473612	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:145473612C>T	uc001enq.1	+	4	1577	c.284C>T	c.(283-285)TCG>TTG	p.S95L	NBPF10_uc001emp.3_Intron	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	95	ANK 3.										0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCGGTGGCCTCGCTGCTCCTT	0.721													9	47					0	0	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145473671	145473671	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:145473671C>G	uc001enq.1	+	4	1636	c.343C>G	c.(343-345)CTT>GTT	p.L115V	NBPF10_uc001emp.3_Intron	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	115	ANK 4.										0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CGCCTCGGCTCTTGTCCACGC	0.701													8	38					0	0	0	0
MUC1	4582	broad.mit.edu	37	1	155160217	155160217	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:155160217C>T	uc010pfj.1	-	4	1093	c.687G>A	c.(685-687)CTG>CTA	p.L229L	RAG1AP1_uc010pey.1_Intron|MUC1_uc001fhy.2_Silent_p.L59L|MUC1_uc001fhz.2_Silent_p.L59L|MUC1_uc010pfb.1_Silent_p.L59L|MUC1_uc010pfc.1_RNA|MUC1_uc009wph.2_Silent_p.L59L|MUC1_uc010pfd.1_Intron|MUC1_uc010pfe.1_RNA|MUC1_uc010pff.1_Intron|MUC1_uc009wpi.2_Silent_p.L59L|MUC1_uc010pfg.1_Intron|MUC1_uc010pfh.1_Silent_p.L205L|MUC1_uc010pfi.1_Silent_p.L205L|MUC1_uc010pfk.1_RNA|MUC1_uc010pfl.1_RNA|MUC1_uc001fin.2_Intron|MUC1_uc009wpk.2_Silent_p.L81L|MUC1_uc001fip.2_Intron|MUC1_uc009wqg.2_Silent_p.L90L|MUC1_uc009wpo.2_Silent_p.L96L|MUC1_uc009wps.2_Silent_p.L117L|MUC1_uc009wpt.2_Silent_p.L120L|MUC1_uc001fic.2_Silent_p.L108L|MUC1_uc009wpu.2_Intron|MUC1_uc009wpq.2_Silent_p.L122L|MUC1_uc009wpv.2_Intron|MUC1_uc001fim.2_Intron|MUC1_uc001fib.2_Intron|MUC1_uc009wpw.2_Intron|MUC1_uc001fie.2_Intron|MUC1_uc009wpr.2_Intron|MUC1_uc001fig.2_Intron|MUC1_uc001fif.2_Intron|MUC1_uc009wpx.2_Silent_p.L118L|MUC1_uc001fid.2_Silent_p.L109L|MUC1_uc009wpj.2_Intron|MUC1_uc001fij.2_Silent_p.L143L|MUC1_uc009wpy.2_Intron|MUC1_uc010pfm.1_Silent_p.L59L|MUC1_uc001fiq.2_Silent_p.L59L|MUC1_uc009wpz.2_Silent_p.L161L|MUC1_uc010pfn.1_Silent_p.L134L|MUC1_uc009wqa.2_Silent_p.L217L|MUC1_uc010pfo.1_Intron|MUC1_uc010pfp.1_Intron|MUC1_uc001fii.2_Intron|MUC1_uc001fih.2_Intron|MUC1_uc001fia.2_Silent_p.L134L|MUC1_uc009wqc.2_Silent_p.L131L|MUC1_uc009wqd.2_Silent_p.L155L|MUC1_uc009wqb.2_Silent_p.L59L|MUC1_uc010pfq.1_Silent_p.L131L|MUC1_uc010pfr.1_Intron|MUC1_uc001fit.2_Silent_p.L59L|MUC1_uc009wqe.2_Intron|MUC1_uc001fil.2_Intron|MUC1_uc009wpm.2_Silent_p.L152L|MUC1_uc009wpp.2_Intron|MUC1_uc010pfs.1_RNA|MUC1_uc001fik.2_Silent_p.L152L|MUC1_uc001fio.2_Intron|MUC1_uc009wqf.2_Intron|MUC1_uc009wpl.2_Intron|MUC1_uc009wpn.2_Silent_p.L143L|MUC1_uc001fis.1_Intron			P15941	MUC1_HUMAN	SubName: Full=Mucin 1, cell surface associated;	1134	Extracellular (Potential).|SEA.					apical plasma membrane|cell surface|cytoplasm|extracellular region|integral to plasma membrane|nucleus	protein binding			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;5.31e-10)|all cancers(21;2.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CTGAGATCGTCAGGTTATATC	0.552			T	IGH@	B-NHL								7	23					0	0	0	0
Unknown	0	broad.mit.edu	37	1	165678677	165678677	+	RNA	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:165678677G>C	uc001gdi.2	+	4		c.688G>C								Homo sapiens carbonic anhydrase XIV (CA14) pseudogene, mRNA (cDNA clone IMAGE:4643256).																		TTCATGGCTAGAAGGCTTCAG	0.483													5	15					0	0	0	0
CRB1	23418	broad.mit.edu	37	1	197396601	197396601	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:197396601T>C	uc001gtz.2	+	7	2281	c.2146T>C	c.(2146-2148)TTT>CTT	p.F716L	CRB1_uc010poz.1_Missense_Mutation_p.F647L|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.F604L|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.F197L|CRB1_uc001gub.1_Missense_Mutation_p.F365L	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	716	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GGCAGGCAGATTTGGCCAGGA	0.433													5	31					0	0	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204408140	204408140	+	Missense_Mutation	SNP	C	T	T	rs75201325		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:204408140C>T	uc001haw.2	-	24	3918	c.3439G>A	c.(3439-3441)GTG>ATG	p.V1147M	PIK3C2B_uc010pqv.1_Missense_Mutation_p.V1119M	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	1147	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GAGCCGGTCACCCCATGCTCC	0.592													9	19					0	0	0	0
NID1	4811	broad.mit.edu	37	1	236189239	236189239	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:236189239C>A	uc001hxo.2	-	8	2043	c.1941G>T	c.(1939-1941)AAG>AAT	p.K647N	NID1_uc009xgd.2_Missense_Mutation_p.K647N	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	647	Nidogen G2 beta-barrel.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	AGCGCAAGATCTTCTCCTCCT	0.577													39	174					5.59293e-11	6.03782e-11	1	0
PITRM1	10531	broad.mit.edu	37	10	3189404	3189404	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr10:3189404G>C	uc010qah.1	-	17	2012	c.1980C>G	c.(1978-1980)ATC>ATG	p.I660M	PITRM1_uc001igr.1_Missense_Mutation_p.I758M|PITRM1_uc001igs.1_5'Flank|PITRM1_uc001igt.1_Missense_Mutation_p.I758M|PITRM1_uc009xhv.1_Missense_Mutation_p.I324M|PITRM1_uc001igu.1_Missense_Mutation_p.I684M|PITRM1_uc010qai.1_Missense_Mutation_p.I729M|uc001igv.1_RNA			E7ES23	E7ES23_HUMAN	SubName: Full=cDNA FLJ54065, moderately similar to Mus musculus pitrilysin metallepetidase 1 (Pitrm1), mRNA;	660					proteolysis		metalloendopeptidase activity|zinc ion binding			pancreas(1)	1						GGATGGGTTTGATATCTGTCA	0.438													8	49					0	0	0	0
SFMBT2	57713	broad.mit.edu	37	10	7409703	7409703	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr10:7409703C>T	uc009xio.1	-	4	435	c.344G>A	c.(343-345)CGC>CAC	p.R115H	SFMBT2_uc001ijn.1_Missense_Mutation_p.R115H|SFMBT2_uc010qay.1_Missense_Mutation_p.R115H|SFMBT2_uc001ijo.1_Missense_Mutation_p.R115H	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	115	MBT 1.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						GTCGGCCCTGCGGTCCTCCCC	0.612													7	35					0	0	0	0
GDF2	2658	broad.mit.edu	37	10	48414496	48414496	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr10:48414496C>T	uc001jfa.1	-	2	535	c.372G>A	c.(370-372)GAG>GAA	p.E124E		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	124					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						AGGGGAAGTCCTCTGTGGCAG	0.507													3	21					0	0	0	0
JMJD1C	221037	broad.mit.edu	37	10	64979732	64979732	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr10:64979732G>C	uc001jmn.2	-	4	759	c.459C>G	c.(457-459)GAC>GAG	p.D153E	JMJD1C_uc001jml.2_Intron|JMJD1C_uc001jmm.2_5'UTR|JMJD1C_uc010qiq.1_5'UTR|JMJD1C_uc009xpi.2_5'UTR|JMJD1C_uc009xpj.1_Intron|JMJD1C_uc001jmp.1_Intron	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	153					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					GGTTTAGGCTGTCTATGTCGT	0.423													17	70					0	0	0	0
LRRTM3	347731	broad.mit.edu	37	10	68857399	68857399	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr10:68857399A>C	uc001jmz.1	+	3	2141	c.1591A>C	c.(1591-1593)AGT>CGT	p.S531R	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	531	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						GCCCACAATAAGTTACTGTGG	0.418													9	87					0	0	0	0
ENTPD7	57089	broad.mit.edu	37	10	101439180	101439180	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr10:101439180G>A	uc001kqa.3	+	4	532	c.354G>A	c.(352-354)ATG>ATA	p.M118I	ENTPD7_uc009xwl.2_Missense_Mutation_p.M120I	NM_020354	NP_065087	Q9NQZ7	ENTP7_HUMAN	ectonucleoside triphosphate diphosphohydrolase	118	Vesicular (Potential).					cytoplasmic vesicle membrane|integral to membrane	hydrolase activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;4.72e-10)|all cancers(201;3.75e-08)		TCAAACAGATGAGAGACCGCA	0.428													4	28					0	0	0	0
ITPRIP	85450	broad.mit.edu	37	10	106075039	106075039	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr10:106075039G>A	uc001kye.2	-	2	844	c.771C>T	c.(769-771)TGC>TGT	p.C257C	ITPRIP_uc001kyf.2_Silent_p.C257C|ITPRIP_uc001kyg.2_Silent_p.C257C	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	257						plasma membrane					0						TGGTCTTGCCGCAGATGCAGC	0.647													24	51					0	0	0	0
COPB1	1315	broad.mit.edu	37	11	14490304	14490304	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:14490304G>A	uc001mli.2	-	16	2375	c.2068C>T	c.(2068-2070)CAG>TAG	p.Q690*	COPB1_uc001mlg.2_Nonsense_Mutation_p.Q690*|COPB1_uc001mlh.2_Nonsense_Mutation_p.Q690*	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	690					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						AAACTCAGCTGAAACTGATCT	0.423													18	149					0	0	0	0
ELP4	26610	broad.mit.edu	37	11	31805046	31805046	+	Missense_Mutation	SNP	G	A	A	rs3026403		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:31805046G>A	uc001mtb.2	+	10	1284	c.1249G>A	c.(1249-1251)GGA>AGA	p.G417R	ELP4_uc001mtc.2_3'UTR|ELP4_uc010rdz.1_Missense_Mutation_p.R464Q	NM_019040	NP_061913	Q96EB1	ELP4_HUMAN	elongation protein 4 homolog	417					histone acetylation|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|Elongator holoenzyme complex|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|prostate(1)	3	Lung SC(675;0.225)					CATGATGGCCGGAGGCAAGAA	0.498													3	74					0	0	0	0
OR4A15	81328	broad.mit.edu	37	11	55135812	55135812	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:55135812C>A	uc010rif.1	+	1	453	c.453C>A	c.(451-453)TAC>TAA	p.Y151*		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	151	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATGATCGATACATGGCCATCT	0.438													35	154					4.3181e-19	4.71517e-19	1	0
OR5AS1	219447	broad.mit.edu	37	11	55798369	55798369	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:55798369C>T	uc010riw.1	+	1	475	c.475C>T	c.(475-477)CAT>TAT	p.H159Y		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					ATCACTGGTCCATGTGTGCCT	0.438													66	107					0	0	0	0
C11orf10	746	broad.mit.edu	37	11	61558011	61558011	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:61558011C>T	uc001nsf.2	-	2	122	c.67G>A	c.(67-69)GTG>ATG	p.V23M	FEN1_uc001nsg.2_5'Flank	NM_014206	NP_055021	P61165	CK010_HUMAN	hypothetical protein LOC746	23	Helical; (Potential).					integral to membrane				breast(1)	1						AAAAGCACCACGGTCAGATGG	0.527													8	13					0	0	0	0
CCDC88B	283234	broad.mit.edu	37	11	64120247	64120247	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:64120247G>A	uc001nzy.2	+	20	3432	c.3388G>A	c.(3388-3390)GTG>ATG	p.V1130M	CCDC88B_uc009ypo.1_Missense_Mutation_p.V1127M|CCDC88B_uc001oaa.2_Missense_Mutation_p.V282M|CCDC88B_uc001oab.1_5'Flank|CCDC88B_uc001oac.2_5'Flank	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	1130	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GCGGGCCAGCGTGGAGGCACA	0.657													4	63					0	0	0	0
ATG2A	23130	broad.mit.edu	37	11	64678743	64678743	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:64678743C>T	uc001obx.2	-	10	1348	c.1233G>A	c.(1231-1233)AAG>AAA	p.K411K		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	411							protein binding			ovary(1)|central_nervous_system(1)	2						TGGGGGCCATCTTGCCTGAGG	0.632													28	46					0	0	0	0
NAALADL1	10004	broad.mit.edu	37	11	64825688	64825688	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:64825688G>A	uc001ocn.2	-	2	236	c.220C>T	c.(220-222)CCT>TCT	p.P74S	NAALADL1_uc010rnw.1_5'UTR	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	74	Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						TCATCCCGAGGGCTGGAGGCC	0.677													5	40					0	0	0	0
LRP5	4041	broad.mit.edu	37	11	68131338	68131338	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:68131338G>A	uc001ont.2	+	4	885	c.810G>A	c.(808-810)AAG>AAA	p.K270K	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	270	LDL-receptor class B 5.|Beta-propeller 1.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CTGGGGGGAAGAGGAAGGAGA	0.587													7	63					0	0	0	0
CTTN	2017	broad.mit.edu	37	11	70281261	70281261	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:70281261G>A	uc001opv.3	+	18	1852	c.1646G>A	c.(1645-1647)CGG>CAG	p.R549Q	CTTN_uc001opu.2_Intron|CTTN_uc001opw.3_Missense_Mutation_p.R512Q|CTTN_uc010rqm.1_Intron|CTTN_uc001opx.2_Missense_Mutation_p.R233Q	NM_005231	NP_005222	Q14247	SRC8_HUMAN	cortactin isoform a	549	SH3.					cell cortex|cytoskeleton|lamellipodium|ruffle|soluble fraction	protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(2;4.34e-41)|LUSC - Lung squamous cell carcinoma(11;1.51e-13)|STAD - Stomach adenocarcinoma(18;0.0513)	Lung(977;0.0234)|LUSC - Lung squamous cell carcinoma(976;0.133)		GTGGAGCTGCGGCAGTAGGGC	0.587													11	36					0	0	0	0
MAP6	4135	broad.mit.edu	37	11	75299192	75299192	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:75299192G>A	uc001owu.2	-	4	1419	c.1354C>T	c.(1354-1356)CAA>TAA	p.Q452*		NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	452						Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					ACAGGACCTTGAGTCTTACTT	0.537													16	53					0	0	0	0
INTS4	92105	broad.mit.edu	37	11	77590009	77590009	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:77590009G>C	uc001oys.2	-	23	2906	c.2878C>G	c.(2878-2880)CCT>GCT	p.P960A	C11orf67_uc001oyp.2_Intron|C11orf67_uc001oyr.1_Intron|INTS4_uc001oyt.2_RNA	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	960					snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			CGCCGTGCAGGTTTGGGCATT	0.527													8	76					0	0	0	0
CCDC89	220388	broad.mit.edu	37	11	85396236	85396236	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr11:85396236C>T	uc001pau.1	-	1	1085	c.938G>A	c.(937-939)CGG>CAG	p.R313Q		NM_152723	NP_689936	Q8N998	CCD89_HUMAN	coiled-coil domain containing 89	313	Potential.					cytoplasm|nucleus					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				TTGCTCAAACCGCTCCAGCGC	0.512													14	51					0	0	0	0
EFCAB4B	84766	broad.mit.edu	37	12	3757747	3757747	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:3757747C>T	uc001qmj.2	-	11	1651	c.1079G>A	c.(1078-1080)CGT>CAT	p.R360H	EFCAB4B_uc010sen.1_Missense_Mutation_p.R360H|EFCAB4B_uc010seo.1_Missense_Mutation_p.R360H|EFCAB4B_uc001qmi.1_RNA	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	360	Potential.				activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			GGCCTTCTCACGCTGTAGACT	0.622													5	36					0	0	0	0
VWF	7450	broad.mit.edu	37	12	6135131	6135131	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:6135131C>T	uc001qnn.1	-	23	3299	c.3049G>A	c.(3049-3051)GAC>AAC	p.D1017N	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1017	VWFD 3.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TCCACAGGGTCTTCCTCCACT	0.527													13	63					0	0	0	0
CHD4	1108	broad.mit.edu	37	12	6688057	6688057	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:6688057C>T	uc001qpo.2	-	34	5100	c.4936G>A	c.(4936-4938)GAA>AAA	p.E1646K	CHD4_uc001qpn.2_Missense_Mutation_p.E1639K|CHD4_uc001qpp.2_Missense_Mutation_p.E1671K|uc001qpq.1_Intron	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1646	Required for interaction with PCNT.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						GCTGACTTTTCCTCCACCTTC	0.413													6	24					0	0	0	0
CHD4	1108	broad.mit.edu	37	12	6690555	6690555	+	Splice_Site	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:6690555C>G	uc001qpo.2	-	32	4846	c.4682_splice	c.e32-1	p.E1561_splice	CHD4_uc001qpn.2_Splice_Site_p.E1554_splice|CHD4_uc001qpp.2_Splice_Site_p.E1586_splice|uc001qpq.1_Intron	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4						chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						ATCCCATCTTCTGCAGAACAA	0.403													5	67					0	0	0	0
TPI1	7167	broad.mit.edu	37	12	6979473	6979473	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:6979473G>A	uc001qrk.2	+	7	714	c.676G>A	c.(676-678)GAT>AAT	p.D226N	TPI1_uc010sfo.1_Missense_Mutation_p.D144N	NM_000365	NP_000356	P60174	TPIS_HUMAN	triosephosphate isomerase 1 isoform 1	226					fatty acid biosynthetic process|gluconeogenesis|glycolysis|pentose-phosphate shunt	cytosol	triose-phosphate isomerase activity				0						CAGCCAGCCTGATGTGGATGG	0.572											OREG0021638	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	24					0	0	0	0
PZP	5858	broad.mit.edu	37	12	9349219	9349219	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:9349219C>T	uc001qvl.2	-	9	959	c.930G>A	c.(928-930)ACG>ACA	p.T310T	PZP_uc009zgl.2_Silent_p.T179T	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TTTCAAAGCCCGTATTTGTAA	0.393													13	70					0	0	0	0
BCL2L14	79370	broad.mit.edu	37	12	12232347	12232347	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:12232347C>G	uc001rac.2	+	2	309	c.108C>G	c.(106-108)TTC>TTG	p.F36L	ETV6_uc001raa.1_Intron|BCL2L14_uc001raf.1_RNA|BCL2L14_uc001rad.2_Missense_Mutation_p.F36L|BCL2L14_uc001rae.2_Missense_Mutation_p.F36L	NM_138723	NP_620049	Q9BZR8	B2L14_HUMAN	BCL2-like 14 isoform 1	36					apoptosis|regulation of apoptosis	cytosol|endomembrane system|intracellular organelle|membrane	protein binding			skin(1)	1		Prostate(47;0.0872)		BRCA - Breast invasive adenocarcinoma(232;0.154)		ATCATGTCTTCAAGAGCACCC	0.493													13	38					0	0	0	0
PPFIBP1	8496	broad.mit.edu	37	12	27841992	27841992	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:27841992G>A	uc001ric.1	+	26	2936	c.2559G>A	c.(2557-2559)TTG>TTA	p.L853L	PPFIBP1_uc010sjr.1_Silent_p.L684L|PPFIBP1_uc001rib.1_Silent_p.L847L|PPFIBP1_uc001ria.2_Silent_p.L822L|PPFIBP1_uc001rid.1_Silent_p.L700L|PPFIBP1_uc001rif.1_Silent_p.L360L	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	853	SAM 3.				cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					CTCAGTTATTGAACATCCCAC	0.408													10	68					0	0	0	0
Unknown	0	broad.mit.edu	37	12	31301769	31301769	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:31301769C>G	uc010sjy.1	-	10	1183	c.1183G>C	c.(1183-1185)GAT>CAT	p.D395H						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		AACTCTGGATCAAATATGTCT	0.363													2	3					0	0	0	0
ANO6	196527	broad.mit.edu	37	12	45810577	45810577	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:45810577G>A	uc001roo.2	+	17	2442	c.2107G>A	c.(2107-2109)GCA>ACA	p.A703T	ANO6_uc010sld.1_Missense_Mutation_p.A703T|ANO6_uc010sle.1_Missense_Mutation_p.A703T|ANO6_uc010slf.1_Missense_Mutation_p.A724T|ANO6_uc010slg.1_Missense_Mutation_p.A685T	NM_001025356	NP_001020527	Q4KMQ2	ANO6_HUMAN	anoctamin 6 isoform a	703	Cytoplasmic (Potential).				activation of blood coagulation via clotting cascade|phosphatidylserine exposure on blood platelet	chloride channel complex|plasma membrane	chloride channel activity			ovary(1)|kidney(1)	2						AAGAGTGGACGCATGGAAACT	0.483													9	28					0	0	0	0
COL2A1	1280	broad.mit.edu	37	12	48367873	48367873	+	Missense_Mutation	SNP	G	A	A	rs121912886		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:48367873G>A	uc001rqu.2	-	53	4497	c.4316C>T	c.(4315-4317)ACG>ATG	p.T1439M	COL2A1_uc001rqt.2_Missense_Mutation_p.T220M|COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.T1370M	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	1439	Fibrillar collagen NC1.		T -> M (in SEDC).		axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	CCCACTCACCGTGCAGCCATC	0.617													7	52					0	0	0	0
LIMA1	51474	broad.mit.edu	37	12	50616056	50616056	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:50616056G>A	uc001rwj.3	-	4	552	c.378C>T	c.(376-378)CCC>CCT	p.P126P	LIMA1_uc001rwh.3_5'UTR|LIMA1_uc001rwi.3_5'UTR|LIMA1_uc001rwk.3_Silent_p.P126P|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	126					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						GTCTAGATCTGGGGTGGATTT	0.512													11	60					0	0	0	0
KRT79	338785	broad.mit.edu	37	12	53227934	53227934	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:53227934C>T	uc001sbb.2	-	1	144	c.111G>A	c.(109-111)ACG>ACA	p.T37T		NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	37	Head.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						TCCGAGACACCGTCACTGAGC	0.637													5	53					0	0	0	0
NAV3	89795	broad.mit.edu	37	12	78531084	78531084	+	Silent	SNP	T	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:78531084T>G	uc001syp.2	+	19	4742	c.4569T>G	c.(4567-4569)TCT>TCG	p.S1523S	NAV3_uc001syo.2_Silent_p.S1523S|NAV3_uc010sub.1_Silent_p.S1009S|NAV3_uc009zsf.2_Silent_p.S354S	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1523	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GTGCCACTTCTCTGGAGGAAA	0.512										HNSCC(70;0.22)			8	48					0	0	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85554449	85554449	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:85554449A>C	uc001tac.2	+	24	4890	c.4779A>C	c.(4777-4779)AAA>AAC	p.K1593N		NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1593										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		CTCTTCCAAAATCACCAAAGA	0.338													5	58					0	0	0	0
VEZT	55591	broad.mit.edu	37	12	95694420	95694420	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:95694420G>C	uc001tdz.2	+	12	2416	c.2311G>C	c.(2311-2313)GAA>CAA	p.E771Q	VEZT_uc009ztb.1_RNA|VEZT_uc009ztc.1_Missense_Mutation_p.E136Q|VEZT_uc001tdy.2_RNA	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	771						acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						AATAATAGAAGAAAATAAAAA	0.383													4	23					0	0	0	0
NEDD1	121441	broad.mit.edu	37	12	97328772	97328772	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:97328772T>C	uc001teu.3	+	7	847	c.508T>C	c.(508-510)TAC>CAC	p.Y170H	NEDD1_uc001tev.3_Missense_Mutation_p.Y170H|NEDD1_uc010svc.1_Missense_Mutation_p.Y81H|NEDD1_uc001tew.2_Missense_Mutation_p.Y177H|NEDD1_uc001tex.2_Missense_Mutation_p.Y81H	NM_152905	NP_690869	Q8NHV4	NEDD1_HUMAN	neural precursor cell expressed, developmentally	170	WD 5.			Y -> C (in Ref. 1; BAC04099).	cell division|G2/M transition of mitotic cell cycle|mitosis	cytosol					0						GCACTTGAAGTACTCCTTGTT	0.328													13	75					0	0	0	0
UBE3B	89910	broad.mit.edu	37	12	109972546	109972546	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:109972546C>T	uc001top.2	+	28	3769	c.3166C>T	c.(3166-3168)CGC>TGC	p.R1056C	UBE3B_uc001toq.2_Missense_Mutation_p.R1056C|UBE3B_uc001tos.2_Missense_Mutation_p.R483C|UBE3B_uc001tot.2_Missense_Mutation_p.R174C|UBE3B_uc010sxp.1_3'UTR	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	1056	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						CGAGAAGCTGCGCTACGCCAT	0.642													9	51					0	0	0	0
RPLP0	6175	broad.mit.edu	37	12	120636693	120636693	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:120636693G>A	uc001txp.2	-	5	666	c.429C>T	c.(427-429)ATC>ATT	p.I143I	RPLP0_uc001txq.2_Silent_p.I143I|RPLP0_uc001txr.2_Silent_p.I143I|uc001txs.1_5'Flank	NM_053275	NP_444505	P05388	RLA0_HUMAN	ribosomal protein P0	143					endocrine pancreas development|interspecies interaction between organisms|ribosome biogenesis|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleus	protein binding|RNA binding|structural constituent of ribosome			ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTTTAGTGGTGATACCTAAAG	0.552													5	32					0	0	0	0
GPR133	283383	broad.mit.edu	37	12	131498863	131498863	+	Missense_Mutation	SNP	C	T	T	rs149266247	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:131498863C>T	uc001uit.3	+	13	2010	c.1451C>T	c.(1450-1452)ACG>ATG	p.T484M	GPR133_uc010tbm.1_Missense_Mutation_p.T516M	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	484	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		CCACTCATTACGGTCCACCTC	0.587													10	47					0	0	0	0
PCDH17	27253	broad.mit.edu	37	13	58208055	58208055	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr13:58208055G>T	uc001vhq.1	+	1	2267	c.1375G>T	c.(1375-1377)GCG>TCG	p.A459S	PCDH17_uc010aec.1_Missense_Mutation_p.A459S	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	459	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CAAGTCGTTCGCGATCAAGAT	0.607													3	19					2.56e-06	2.67253e-06	1	0
GPR18	2841	broad.mit.edu	37	13	99907960	99907960	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr13:99907960G>A	uc001voe.3	-	3	668	c.167C>T	c.(166-168)ACG>ATG	p.T56M	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron|GPR18_uc010afv.2_Missense_Mutation_p.T56M	NM_005292	NP_005283	Q14330	GPR18_HUMAN	G protein-coupled receptor 18	56	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Glycine(DB00145)	GATGGTTACCGTGGTTCTCTT	0.348													28	56					0	0	0	0
PCID2	55795	broad.mit.edu	37	13	113832567	113832567	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr13:113832567T>A	uc010tju.1	-	14	1226	c.1145A>T	c.(1144-1146)CAG>CTG	p.Q382L	PCID2_uc001vtb.2_Missense_Mutation_p.Q215L|PCID2_uc010tjv.1_Missense_Mutation_p.Q382L|PCID2_uc010tjw.1_Missense_Mutation_p.Q382L|PCID2_uc001vte.2_Missense_Mutation_p.Q275L|PCID2_uc001vtd.2_Missense_Mutation_p.Q275L|PCID2_uc001vtf.2_Missense_Mutation_p.Q275L	NM_001127203	NP_001120675	Q5JVF3	PCID2_HUMAN	PCI domain containing 2	382	PCI.				negative regulation of apoptosis|negative regulation of cysteine-type endopeptidase activity|positive regulation of mitotic cell cycle spindle assembly checkpoint|positive regulation of transcription, DNA-dependent|regulation of mRNA stability|spleen development		protein binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.216)|all_epithelial(44;0.234)	all cancers(43;0.104)			CACCAGCTTCTGATGCTGATG	0.522													25	26					0	0	0	0
DHRS4	10901	broad.mit.edu	37	14	24424278	24424278	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr14:24424278G>T	uc001wla.2	+	2	196	c.163G>T	c.(163-165)GAC>TAC	p.D55Y	C14orf167_uc001wkz.2_5'Flank|C14orf167_uc001wky.2_5'Flank|C14orf167_uc001wkx.2_5'Flank|C14orf167_uc010akx.1_RNA|DHRS4_uc010aky.2_Missense_Mutation_p.D55Y|DHRS4_uc001wlb.2_Missense_Mutation_p.D55Y|DHRS4_uc010akz.2_Missense_Mutation_p.D55Y|DHRS4_uc001wlc.3_Missense_Mutation_p.D55Y|DHRS4L2_uc001wld.3_Missense_Mutation_p.D55Y|DHRS4L2_uc001wle.3_Missense_Mutation_p.D55Y	NM_021004	NP_066284	Q9BTZ2	DHRS4_HUMAN	peroxisomal short-chain alcohol dehydrogenase	55	NADP (By similarity).					mitochondrion|nuclear membrane|peroxisome	binding|carbonyl reductase (NADPH) activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.00962)	Vitamin A(DB00162)	TTTGGCCCAGGACGGGGCCCA	0.557													15	81					8.60227e-14	9.35744e-14	1	0
CPNE6	9362	broad.mit.edu	37	14	24546188	24546188	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr14:24546188G>A	uc001wll.2	+	14	1365	c.1266G>A	c.(1264-1266)CCG>CCA	p.P422P	CPNE6_uc010tnv.1_Silent_p.P477P|CPNE6_uc001wlm.2_Silent_p.P247P|CPNE6_uc001wln.2_Silent_p.P90P	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	422	VWFA.				lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		TGGCTGAGCCGGCCCAGCGGG	0.637													5	24					0	0	0	0
SDCCAG1	9147	broad.mit.edu	37	14	50262630	50262630	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr14:50262630G>C	uc001wxc.2	-	26	2566	c.2498C>G	c.(2497-2499)TCA>TGA	p.S833*	SDCCAG1_uc010anj.1_Nonsense_Mutation_p.S833*|SDCCAG1_uc001wwz.2_Nonsense_Mutation_p.S33*|SDCCAG1_uc001wxa.2_Nonsense_Mutation_p.S113*|SDCCAG1_uc010tqi.1_Nonsense_Mutation_p.S812*|SDCCAG1_uc001wxe.2_Nonsense_Mutation_p.S791*|SDCCAG1_uc001wxd.1_Nonsense_Mutation_p.S238*	NM_004713	NP_004704	O60524	NEMF_HUMAN	serologically defined colon cancer antigen 1	833						cytoplasm|nucleus					0	all_epithelial(31;0.000822)|Breast(41;0.0117)	all_lung(585;1.02e-05)		OV - Ovarian serous cystadenocarcinoma(311;5.99e-34)		TAAATCTCCTGAGTCACTTGG	0.338													7	45					0	0	0	0
C14orf101	54916	broad.mit.edu	37	14	57101623	57101623	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr14:57101623T>G	uc001xcm.2	+	14	1853	c.1731T>G	c.(1729-1731)GAT>GAG	p.D577E	C14orf101_uc001xcj.2_RNA|C14orf101_uc001xcl.1_RNA|C14orf101_uc001xcn.2_RNA|C14orf101_uc010trf.1_Missense_Mutation_p.D110E|C14orf101_uc001xco.2_Missense_Mutation_p.D110E	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916	577						integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		ACAGGTTTGATCCATCTTCTT	0.294													20	62					0	0	0	0
NEK9	91754	broad.mit.edu	37	14	75567725	75567725	+	Missense_Mutation	SNP	C	T	T	rs151072111		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr14:75567725C>T	uc001xrl.2	-	16	2126	c.1972G>A	c.(1972-1974)GGT>AGT	p.G658S	NEK9_uc001xrk.2_Missense_Mutation_p.G158S	NM_033116	NP_149107	Q8TD19	NEK9_HUMAN	NIMA-related kinase 9	658	RCC1 5.				cell division|mitosis	mitochondrion|nucleus	ATP binding|metal ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(2)|stomach(2)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00718)		AACTCATCACCGCAGGAGACC	0.517													21	33					0	0	0	0
ISM2	145501	broad.mit.edu	37	14	77942421	77942421	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr14:77942421C>G	uc001xtz.2	-	7	1307	c.1233G>C	c.(1231-1233)AAG>AAC	p.K411N	ISM2_uc001xua.2_3'UTR|ISM2_uc001xty.2_Missense_Mutation_p.K323N|ISM2_uc010tvl.1_Missense_Mutation_p.K330N	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	411	AMOP.					extracellular region				skin(1)	1						GGAAGTCGCTCTTGCAGTTCA	0.612													9	46					0	0	0	0
SNORD113-7	767567	broad.mit.edu	37	14	101407483	101407483	+	RNA	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr14:101407483G>A	uc001yio.2	+	1		c.21G>A				NR_003235				Homo sapiens small nucleolar RNA, C/D box 113-7 (SNORD113-7), non-coding RNA.												0						ATGAGTATGCGTGGGGCATCT	0.363													18	48					0	0	0	0
ARHGAP11B	89839	broad.mit.edu	37	15	30938440	30938440	+	RNA	SNP	A	G	G	rs115448147	by1000genomes	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr15:30938440A>G	uc010azv.1	+	11		c.1250A>G			ARHGAP11B_uc001zeu.2_RNA			Q3KRB8	RHGBB_HUMAN	Homo sapiens cDNA, FLJ17072.						regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		all_lung(180;2.71e-09)|Breast(32;0.00116)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		CTCCTTTGCTATTTGTGCATG	0.493													3	26					0	0	0	0
ARHGAP11B	89839	broad.mit.edu	37	15	30938448	30938448	+	RNA	SNP	A	G	G	rs146574312	by1000genomes	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr15:30938448A>G	uc010azv.1	+	11		c.1258A>G			ARHGAP11B_uc001zeu.2_RNA			Q3KRB8	RHGBB_HUMAN	Homo sapiens cDNA, FLJ17072.						regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		all_lung(180;2.71e-09)|Breast(32;0.00116)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		CTATTTGTGCATGGTGGCTGG	0.483													3	24					0	0	0	0
TRPM1	4308	broad.mit.edu	37	15	31295039	31295039	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr15:31295039G>A	uc001zfm.2	-	27	3926	c.3798C>T	c.(3796-3798)AGC>AGT	p.S1266S	TRPM1_uc010azy.2_Silent_p.S1173S|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	1266	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		AGCCATCAGCGCTATTGATGC	0.488													13	56					0	0	0	0
ZNF592	9640	broad.mit.edu	37	15	85327115	85327115	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr15:85327115G>C	uc002bld.2	+	4	1545	c.1209G>C	c.(1207-1209)AAG>AAC	p.K403N	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	403					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			ATCCAAGTAAGTCCCCTGTTG	0.532													6	33					0	0	0	0
NTRK3	4916	broad.mit.edu	37	15	88483978	88483978	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr15:88483978T>C	uc002bme.1	-	14	1754	c.1592A>G	c.(1591-1593)CAG>CGG	p.Q531R	NTRK3_uc002bmh.2_Missense_Mutation_p.Q523R|NTRK3_uc002bmf.1_Missense_Mutation_p.Q531R|NTRK3_uc010upl.1_Missense_Mutation_p.Q433R|NTRK3_uc010bnh.1_Missense_Mutation_p.Q523R	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	531	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			CTTAATGTGCTGCACATCTGT	0.537			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			20	78					0	0	0	0
HAPLN3	145864	broad.mit.edu	37	15	89424833	89424833	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr15:89424833C>T	uc002bnc.2	-	3	376	c.248G>A	c.(247-249)CGT>CAT	p.R83H	HAPLN3_uc002bne.2_RNA|HAPLN3_uc002bnd.2_Missense_Mutation_p.R145H	NM_178232	NP_839946	Q96S86	HPLN3_HUMAN	hyaluronan and proteoglycan link protein 3	83	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	Lung NSC(78;0.0392)|all_lung(78;0.077)					GACACGCACACGCCGCGGGGA	0.657													20	58					0	0	0	0
SYNM	23336	broad.mit.edu	37	15	99672905	99672905	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr15:99672905C>T	uc002bup.2	+	6	4460	c.4340C>T	c.(4339-4341)ACG>ATG	p.T1447M	SYNM_uc002buo.2_Intron|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	1447	Tail.|Interaction with DMD and UTRN.|Interaction with TLN1 and VCL.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						AGCAGCAGAACGCTAAGGCAC	0.542													33	114					0	0	0	0
MEF2A	4205	broad.mit.edu	37	15	100250868	100250868	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr15:100250868G>T	uc010urw.1	+	10	1404	c.1045G>T	c.(1045-1047)GCC>TCC	p.A349S	MEF2A_uc010urv.1_Missense_Mutation_p.A279S|MEF2A_uc010bos.2_Missense_Mutation_p.A339S|MEF2A_uc002bvf.2_Missense_Mutation_p.A341S|MEF2A_uc002bve.2_Missense_Mutation_p.A347S|MEF2A_uc002bvg.2_Missense_Mutation_p.A339S|MEF2A_uc002bvi.2_Missense_Mutation_p.A339S|MEF2A_uc010bot.2_Missense_Mutation_p.A271S	NM_005587	NP_005578	Q02078	MEF2A_HUMAN	myocyte enhancer factor 2A isoform 1	349					apoptosis|BMK cascade|cardiac conduction|cellular response to calcium ion|dendrite morphogenesis|innate immune response|mitochondrial genome maintenance|mitochondrion distribution|muscle organ development|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|ventricular cardiac myofibril development	nuclear chromatin|nucleoplasm	activating transcription factor binding|histone acetyltransferase binding|histone deacetylase binding|protein heterodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|SMAD binding			ovary(1)	1	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00085)			TGACCTGTCAGCCCTTCAAGG	0.527													4	20					0.00909568	0.0092581	1	0
MSLN	10232	broad.mit.edu	37	16	818647	818647	+	Splice_Site	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:818647G>T	uc002cjw.1	+	17	1859	c.1808_splice	c.e17-1	p.E603_splice	MSLN_uc002cjt.1_Splice_Site_p.E595_splice|MSLN_uc002cju.1_Splice_Site_p.E595_splice|MSLN_uc010brd.1_Splice_Site_p.E594_splice|MSLN_uc002cjv.1_Intron|MSLN_uc002cjx.1_Splice_Site_p.E595_splice|MSLN_uc002cjy.1_Missense_Mutation_p.R287I|MIR662_hsa-mir-662|MI0003670_5'Flank	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein						cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				TCTCTCTGTAGAGGCCCTCTC	0.697													12	52					4.3838e-07	4.61027e-07	1	0
GRIN2A	2903	broad.mit.edu	37	16	9934948	9934948	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:9934948C>T	uc002czo.3	-	6	1890	c.1342G>A	c.(1342-1344)GAG>AAG	p.E448K	GRIN2A_uc010uym.1_Missense_Mutation_p.E448K|GRIN2A_uc010uyn.1_Missense_Mutation_p.E291K|GRIN2A_uc002czr.3_Missense_Mutation_p.E448K	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	448	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTCATCCCCTCATTGGTTGAA	0.254													14	60					0	0	0	0
SH2B1	25970	broad.mit.edu	37	16	28883644	28883644	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:28883644C>T	uc002dri.2	+	9	2086	c.1647C>T	c.(1645-1647)CAC>CAT	p.H549H	uc010vct.1_Intron|SH2B1_uc010vdc.1_Silent_p.H239H|SH2B1_uc002drj.2_Silent_p.H549H|SH2B1_uc002drk.2_Silent_p.H549H|SH2B1_uc002drl.2_Silent_p.H549H|SH2B1_uc010vdd.1_Silent_p.H213H|SH2B1_uc010vde.1_Silent_p.H549H|SH2B1_uc002drm.2_Silent_p.H549H	NM_001145795	NP_001139267	Q9NRF2	SH2B1_HUMAN	SH2B adaptor protein 1 isoform 1	549	Interaction with JAK2 (low-affinity binding; independent of JAK2 phosphorylation) (By similarity).|SH2.				blood coagulation|intracellular signal transduction	cytosol|membrane|nucleus	signal transducer activity			ovary(2)	2						CTGGCTCCCACGGTGTCTTCC	0.622													10	37					0	0	0	0
NKD1	85407	broad.mit.edu	37	16	50583366	50583366	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:50583366G>A	uc002egg.1	+	3	316	c.92G>A	c.(91-93)CGG>CAG	p.R31Q		NM_033119	NP_149110	Q969G9	NKD1_HUMAN	naked cuticle homolog 1	31					Wnt receptor signaling pathway	cytoplasm|plasma membrane	calcium ion binding|protein binding				0		all_cancers(37;0.229)		GBM - Glioblastoma multiforme(240;0.243)		GCCTGGGCTCGGAAGGGCATC	0.692													6	21					0	0	0	0
CNGB1	1258	broad.mit.edu	37	16	58001097	58001097	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:58001097C>G	uc002emt.2	-	2	159	c.94G>C	c.(94-96)GAG>CAG	p.E32Q	CNGB1_uc010cdh.2_Missense_Mutation_p.E32Q|CNGB1_uc002emu.2_Missense_Mutation_p.E32Q	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	32	Glu-rich.				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GCCTCCATCTCTGGCTCTGGT	0.637													10	45					0	0	0	0
CDH11	1009	broad.mit.edu	37	16	65032724	65032724	+	Silent	SNP	A	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:65032724A>G	uc002eoi.2	-	4	698	c.264T>C	c.(262-264)ATT>ATC	p.I88I	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Silent_p.I88I|CDH11_uc010vin.1_5'UTR|CDH11_uc010vio.1_Silent_p.I88I	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	88	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		GAATGTATTTAATGTTCCCAT	0.408			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			7	36					0	0	0	0
NFATC3	4775	broad.mit.edu	37	16	68200760	68200760	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:68200760G>C	uc002evo.1	+	5	1826	c.1616G>C	c.(1615-1617)GGT>GCT	p.G539A	NFATC3_uc010vkl.1_Missense_Mutation_p.G60A|NFATC3_uc010vkm.1_Missense_Mutation_p.G60A|NFATC3_uc010vkn.1_Missense_Mutation_p.G60A|NFATC3_uc010vko.1_Missense_Mutation_p.G60A|NFATC3_uc010vkp.1_Missense_Mutation_p.G60A|NFATC3_uc010vkq.1_Missense_Mutation_p.G60A|NFATC3_uc002evl.2_Missense_Mutation_p.G60A|NFATC3_uc002evk.2_Missense_Mutation_p.G539A|NFATC3_uc002evm.1_Missense_Mutation_p.G539A|NFATC3_uc002evn.1_Missense_Mutation_p.G539A|NFATC3_uc010vkr.1_Missense_Mutation_p.G60A|NFATC3_uc010vks.1_Missense_Mutation_p.G60A|NFATC3_uc010vkt.1_Missense_Mutation_p.G60A|NFATC3_uc010vku.1_Missense_Mutation_p.G60A|NFATC3_uc010vkv.1_Missense_Mutation_p.G60A|NFATC3_uc010vkw.1_Missense_Mutation_p.G60A|NFATC3_uc010vkx.1_Missense_Mutation_p.G60A|NFATC3_uc010vky.1_Missense_Mutation_p.G60A|NFATC3_uc010vkz.1_Missense_Mutation_p.G60A|NFATC3_uc010vla.1_Missense_Mutation_p.G60A|NFATC3_uc010vlb.1_Missense_Mutation_p.G60A|NFATC3_uc010vlc.1_Missense_Mutation_p.G60A	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	539	RHD.				inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		GATTGTGCAGGTATTTTGAAA	0.299													7	19					0	0	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77325197	77325197	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:77325197A>C	uc002ffc.3	-	21	3787	c.3368T>G	c.(3367-3369)ATG>AGG	p.M1123R		NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1123	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TCCAGCTACCATGTTGTACAC	0.502													16	86					0	0	0	0
WFDC1	58189	broad.mit.edu	37	16	84353096	84353096	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:84353096G>A	uc002fhw.2	+	4	658	c.481G>A	c.(481-483)GAG>AAG	p.E161K	WFDC1_uc002fhv.2_Missense_Mutation_p.E161K	NM_021197	NP_067020	Q9HC57	WFDC1_HUMAN	WAP four-disulfide core domain 1 precursor	161					negative regulation of cell growth	extracellular space	serine-type endopeptidase inhibitor activity			breast(1)	1						CTCGGGCTATGAGTGCCACAT	0.667													13	36					0	0	0	0
FOXL1	2300	broad.mit.edu	37	16	86612542	86612542	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:86612542G>A	uc002fjr.2	+	1	428	c.213G>A	c.(211-213)ACG>ACA	p.T71T		NM_005250	NP_005241	Q12952	FOXL1_HUMAN	forkhead box L1	71	Fork-head.				brain development|camera-type eye development|cartilage development|embryo development|forelimb morphogenesis|heart development|organ morphogenesis|pattern specification process|proteoglycan biosynthetic process|regulation of sequence-specific DNA binding transcription factor activity|regulation of Wnt receptor signaling pathway|visceral mesoderm-endoderm interaction involved in midgut development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1						AGAGGGTCACGCTCAACGGCA	0.642													27	72					0	0	0	0
Unknown	0	broad.mit.edu	37	16	88620365	88620365	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:88620365G>A	uc010vox.1	-	2	265	c.265C>T	c.(265-267)CGT>TGT	p.R89C						RecName: Full=Putative uncharacterized protein C16orf85;																		GAGCTGGGACGGACGCCCGCA	0.657													15	84					0	0	0	0
DEF8	54849	broad.mit.edu	37	16	90016035	90016035	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:90016035G>A	uc002fpn.1	+	2	251	c.162G>A	c.(160-162)ACG>ACA	p.T54T	DEF8_uc002fpl.2_Intron|DEF8_uc002fpm.2_Intron|DEF8_uc002fpo.1_Intron|DEF8_uc002fpp.1_Intron|DEF8_uc010vpq.1_Intron|DEF8_uc010vpr.1_Intron	NM_207514	NP_997397	Q6ZN54	DEFI8_HUMAN	differentially expressed in FDCP 8 isoform 1	54					intracellular signal transduction		zinc ion binding			central_nervous_system(1)	1		all_cancers(9;7.59e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.0019)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0274)		CGGGCAGGACGCGGGAGGCCA	0.677													10	48					0	0	0	0
ZNF232	7775	broad.mit.edu	37	17	5009153	5009153	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr17:5009153C>T	uc002gas.2	-	5	1974	c.1220G>A	c.(1219-1221)CGG>CAG	p.R407Q	ZNF232_uc002gar.1_Missense_Mutation_p.R425Q|ZNF232_uc002gat.2_Missense_Mutation_p.R434Q	NM_014519	NP_055334	Q9UNY5	ZN232_HUMAN	zinc finger protein 232	407	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						ATGAACTCTCCGATGTCTAAT	0.433													16	67					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	T	T	rs11540652		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr17:7577538C>T	uc002gim.2	-	7	937	c.743G>A	c.(742-744)CGG>CAG	p.R248Q	TP53_uc002gig.1_Missense_Mutation_p.R248Q|TP53_uc002gih.2_Missense_Mutation_p.R248Q|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R116Q|TP53_uc010cng.1_Missense_Mutation_p.R116Q|TP53_uc002gii.1_Missense_Mutation_p.R116Q|TP53_uc010cnh.1_Missense_Mutation_p.R248Q|TP53_uc010cni.1_Missense_Mutation_p.R248Q|TP53_uc002gij.2_Missense_Mutation_p.R248Q|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R155Q|TP53_uc002gio.2_Missense_Mutation_p.R116Q	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	248	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		R -> W (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> L (in sporadic cancers; somatic mutation).|NR -> KW (in sporadic cancers; somatic mutation).|R -> C (in a sporadic cancer; somatic mutation).|NR -> IP (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R248Q(523)|p.R248W(443)|p.R248L(63)|p.R248P(12)|p.R248G(11)|p.R248R(10)|p.0?(7)|p.R155Q(4)|p.N247_R248delNR(2)|p.N247_R248>KW(2)|p.M246_P250delMNRRP(2)|p.R248fs*97(2)|p.R248_P250delRRP(1)|p.N247_R249delNRR(1)|p.N247_P250delNRRP(1)|p.R249fs*96(1)|p.R248C(1)|p.G245fs*14(1)|p.N247_R248>IP(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GATGGGCCTCCGGTTCATGCC	0.572	R248Q(KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(HS683_CENTRAL_NERVOUS_SYSTEM)|R248Q(NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(HCC1143_BREAST)|R248Q(BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SKUT1_SOFT_TISSUE)|R248Q(HSC4_UPPER_AERODIGESTIVE_TRACT)|R248Q(HEC1A_ENDOMETRIUM)|R248Q(SF295_CENTRAL_NERVOUS_SYSTEM)|R248Q(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NCIN87_STOMACH)|R248Q(P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(RT112_URINARY_TRACT)|R248Q(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(PANC0203_PANCREAS)|R248Q(EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NIHOVCAR3_OVARY)|R248Q(CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SW1463_LARGE_INTESTINE)|R248Q(HCC70_BREAST)|R248Q(KYSE150_OESOPHAGUS)|R248Q(NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NCIH211_LUNG)|R248Q(KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(PC14_LUNG)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			12	16					0	0	0	0
FAM27L	284123	broad.mit.edu	37	17	21825525	21825525	+	RNA	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr17:21825525G>A	uc002gyz.2	+	1		c.156G>A				NR_028336				Homo sapiens family with sequence similarity 27-like, mRNA (cDNA clone MGC:35151 IMAGE:5169482), complete cds.												0				UCEC - Uterine corpus endometrioid carcinoma (53;0.11)|BRCA - Breast invasive adenocarcinoma(1;0.00463)		ggcagagtccggggaagcagc	0													12	40					0	0	0	0
RAB34	83871	broad.mit.edu	37	17	27045165	27045165	+	5'Flank	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr17:27045165G>C	uc002hce.2	-						RAB34_uc002hcg.2_5'Flank|RAB34_uc002hcf.2_5'Flank|RAB34_uc010was.1_Missense_Mutation_p.R41G|RAB34_uc010wat.1_Missense_Mutation_p.R41G|RAB34_uc002hch.2_5'UTR|RAB34_uc010wau.1_5'UTR|RAB34_uc010wav.1_Missense_Mutation_p.R41G|RPL23A_uc002hci.2_5'Flank|SNORD42B_uc002hcj.1_5'Flank|RPL23A_uc002hck.1_5'Flank	NM_031934	NP_114140	Q9BZG1	RAB34_HUMAN	Ras-related protein RAB34 isoform 1						protein transport|small GTPase mediated signal transduction	Golgi apparatus	GTP binding				0	Lung NSC(42;0.00431)					ATGGGGAATCGGAGACTGCTG	0.632													5	12					0	0	0	0
CCL2	6347	broad.mit.edu	37	17	32583342	32583342	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr17:32583342C>A	uc002hhy.2	+	2	251	c.178C>A	c.(178-180)CCC>ACC	p.P60T		NM_002982	NP_002973	P13500	CCL2_HUMAN	small inducible cytokine A2 precursor	60				Missing: 90% reduction in activity.|Missing: 83% reduction in activity.	angiogenesis|anti-apoptosis|apoptotic cell clearance|astrocyte cell migration|cell adhesion|cellular response to interferon-gamma|cellular response to interleukin-1|cellular response to lipopolysaccharide|cellular response to tumor necrosis factor|G-protein signaling, coupled to cyclic nucleotide second messenger|helper T cell extravasation|humoral immune response|inflammatory response|JAK-STAT cascade|macrophage chemotaxis|monocyte chemotaxis|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of T cell activation|viral genome replication	extracellular space	CCR2 chemokine receptor binding|chemokine activity|protein kinase activity|signal transducer activity			pancreas(1)	1	Breast(3;0.00224)	Ovarian(249;0.0694)|Breast(31;0.151)|Lung NSC(157;0.153)		UCEC - Uterine corpus endometrioid carcinoma (308;0.000241)|BRCA - Breast invasive adenocarcinoma(366;0.0103)	Atorvastatin(DB01076)|Danazol(DB01406)|Mimosine(DB01055)|Simvastatin(DB00641)	CAGCAAGTGTCCCAAAGAAGC	0.493													14	30					1.3612e-06	1.42626e-06	1	0
GSDMB	55876	broad.mit.edu	37	17	38073560	38073560	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr17:38073560C>T	uc010cwj.2	-	1	15	c.10G>A	c.(10-12)GTA>ATA	p.V4I	GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_RNA|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Missense_Mutation_p.V4I|GSDMB_uc002hth.2_Missense_Mutation_p.V4I|GSDMB_uc010wem.1_Missense_Mutation_p.V4I	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	4						cytoplasm				breast(1)|pancreas(1)	2						TCCTCAAATACGCTGAACATT	0.433													18	47					0	0	0	0
RPS6KB1	6198	broad.mit.edu	37	17	57990070	57990070	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr17:57990070G>A	uc002ixy.2	+	3	320	c.217G>A	c.(217-219)GAA>AAA	p.E73K	RPS6KB1_uc010ddj.1_Missense_Mutation_p.E73K|RPS6KB1_uc010wom.1_Missense_Mutation_p.E20K|RPS6KB1_uc010won.1_Missense_Mutation_p.E73K|RPS6KB1_uc010woo.1_Missense_Mutation_p.E8K	NM_003161	NP_003152	P23443	KS6B1_HUMAN	ribosomal protein S6 kinase, 70kDa, polypeptide	73					apoptosis|G1/S transition of mitotic cell cycle|insulin receptor signaling pathway|negative regulation of apoptosis|phosphatidylinositol-mediated signaling|positive regulation of mitotic cell cycle|positive regulation of translational initiation|TOR signaling cascade	cell junction|cytoplasm|cytosol|mitochondrial outer membrane|nucleus|nucleus|synapse|synaptosome	ATP binding|protein binding|protein kinase activity			large_intestine(1)	1	all_cancers(5;1.63e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.57e-12)|all cancers(12;6.41e-11)			TGAGAAATTTGAAATCTCAGA	0.373													17	115					0	0	0	0
C17orf28	283987	broad.mit.edu	37	17	72959983	72959983	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr17:72959983C>A	uc002jmj.3	-	3	388	c.239G>T	c.(238-240)GGA>GTA	p.G80V	C17orf28_uc010wrs.1_5'UTR|C17orf28_uc002jmk.2_Missense_Mutation_p.G80V	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	80						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					ACTCTCAGCTCCCTGCACCAG	0.652													12	32					1.15919e-05	1.20572e-05	1	0
EIF4A3	9775	broad.mit.edu	37	17	78120703	78120703	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr17:78120703C>G	uc010wuc.1	-	2	131	c.58G>C	c.(58-60)GAG>CAG	p.E20Q	EIF4A3_uc002jxs.2_Missense_Mutation_p.E20Q	NM_014740	NP_055555	P38919	IF4A3_HUMAN	eukaryotic translation initiation factor 4A,	20					mRNA transport|negative regulation of translation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation|rRNA processing	catalytic step 2 spliceosome|cytoplasm|exon-exon junction complex|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|poly(A) RNA binding|protein binding			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)			ATGTCTTCCTCTTTGAGCAGC	0.592													5	38					0	0	0	0
RPTOR	57521	broad.mit.edu	37	17	78938109	78938109	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr17:78938109G>A	uc002jyt.1	+	34	4792	c.3987G>A	c.(3985-3987)TCG>TCA	p.S1329S	RPTOR_uc010wug.1_Silent_p.S1171S|RPTOR_uc002jyu.1_Silent_p.S222S	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	1329	WD 7.				cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						CCGTGTACTCGGTGGAGAAGC	0.652													19	36					0	0	0	0
ADCYAP1	116	broad.mit.edu	37	18	908272	908272	+	Silent	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr18:908272C>G	uc010dkg.2	+	4	368	c.249C>G	c.(247-249)GTC>GTG	p.V83V	ADCYAP1_uc010dkh.2_Silent_p.V83V	NM_001099733	NP_001093203	P18509	PACA_HUMAN	adenylate cyclase activating polypeptide	83					activation of adenylate cyclase activity|cell-cell signaling|female pregnancy|nerve growth factor receptor signaling pathway|regulation of G-protein coupled receptor protein signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|peptide hormone receptor binding				0						TTAGAGATGTCGCCCACGGGA	0.677													3	20					0	0	0	0
ASXL3	80816	broad.mit.edu	37	18	31325516	31325516	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr18:31325516C>G	uc010dmg.1	+	12	5759	c.5704C>G	c.(5704-5706)CCC>GCC	p.P1902A	ASXL3_uc002kxq.2_Missense_Mutation_p.P1609A	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1902					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GCGGCTGCTCCCCTCGTGTAG	0.498													6	93					0	0	0	0
SETBP1	26040	broad.mit.edu	37	18	42529990	42529990	+	Nonsense_Mutation	SNP	G	T	T	rs143196787		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr18:42529990G>T	uc010dni.2	+	4	981	c.685G>T	c.(685-687)GGA>TGA	p.G229*		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	229						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CTCTGACAGCGGACCCGTCAC	0.547									Schinzel-Giedion_syndrome				7	44					0.000157383	0.000162515	1	0
CXXC1	30827	broad.mit.edu	37	18	47811188	47811188	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr18:47811188C>T	uc002leq.3	-	8	1667	c.934G>A	c.(934-936)GAG>AAG	p.E312K	CXXC1_uc002lep.3_Missense_Mutation_p.E169K|CXXC1_uc002ler.3_Missense_Mutation_p.E312K|CXXC1_uc010doy.2_Missense_Mutation_p.E312K|CXXC1_uc002les.2_Missense_Mutation_p.E312K	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	312	Asp/Glu-rich (acidic).				histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						AATGGGGACTCTTCTGTGTCG	0.493													4	18					0	0	0	0
CXXC1	30827	broad.mit.edu	37	18	47811201	47811201	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr18:47811201C>T	uc002leq.3	-	8	1654	c.921G>A	c.(919-921)ATG>ATA	p.M307I	CXXC1_uc002lep.3_Missense_Mutation_p.M164I|CXXC1_uc002ler.3_Missense_Mutation_p.M307I|CXXC1_uc010doy.2_Missense_Mutation_p.M307I|CXXC1_uc002les.2_Missense_Mutation_p.M307I	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	307	Asp/Glu-rich (acidic).				histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CTGTGTCGCTCATCCAGGGCT	0.527													5	17					0	0	0	0
CCDC68	80323	broad.mit.edu	37	18	52571634	52571634	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr18:52571634G>A	uc002lfs.2	-	12	1135	c.963C>T	c.(961-963)ACC>ACT	p.T321T	CCDC68_uc002lft.2_Silent_p.T321T	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	321										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		AAACACCTTCGGTCTTCAATT	0.368													7	23					0	0	0	0
MED16	10025	broad.mit.edu	37	19	875395	875395	+	Silent	SNP	C	T	T	rs61755331	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:875395C>T	uc002lqd.1	-	10	1771	c.1620G>A	c.(1618-1620)ACG>ACA	p.T540T	MED16_uc010drw.1_Silent_p.T365T|MED16_uc002lqe.2_Silent_p.T529T|MED16_uc002lqf.2_Silent_p.T529T|MED16_uc010xfv.1_Intron|MED16_uc010xfw.1_Silent_p.T460T|MED16_uc010xfx.1_Silent_p.T385T|MED16_uc010xfy.1_Intron|MED16_uc010xfz.1_5'Flank	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	540					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCGGGTCACCGTGCAGGGCG	0.647													8	31					0	0	0	0
MBD3	53615	broad.mit.edu	37	19	1581180	1581180	+	Silent	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:1581180G>C	uc002ltl.1	-	5	610	c.588C>G	c.(586-588)CTC>CTG	p.L196L	MBD3_uc002ltj.2_Silent_p.L196L|MBD3_uc002ltk.2_Silent_p.L164L	NM_003926	NP_003917	O95983	MBD3_HUMAN	methyl-CpG binding domain protein 3	196					transcription, DNA-dependent	NuRD complex	DNA binding|protein binding			ovary(1)|pancreas(1)|skin(1)	3		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.179)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGCGGCCGAGAGCTGTCCCG	0.652													5	14					0	0	0	0
TNFSF14	8740	broad.mit.edu	37	19	6670018	6670018	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:6670018G>A	uc002mfk.1	-	2	445	c.63C>T	c.(61-63)TTC>TTT	p.F21F	TNFSF14_uc002mfj.1_Silent_p.F21F	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	21	Cytoplasmic (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						CCAGCCTCGTGAATGGGATGT	0.642													19	80					0	0	0	0
NDUFA7	4701	broad.mit.edu	37	19	8381382	8381382	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:8381382C>G	uc002mjm.1	-	3	287	c.249G>C	c.(247-249)GAG>GAC	p.E83D		NM_005001	NP_004992	O95182	NDUA7_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	83					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0					NADH(DB00157)	ATCCTCACCTCTCTGCTGGCT	0.587													15	82					0	0	0	0
KEAP1	9817	broad.mit.edu	37	19	10610149	10610149	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:10610149G>A	uc002moq.1	-	2	717	c.561C>T	c.(559-561)ATC>ATT	p.I187I	KEAP1_uc002mor.1_Silent_p.I187I	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	187	BACK.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			CGAAGTTGGCGATGCCGATGG	0.592													4	44					0	0	0	0
ZNF653	115950	broad.mit.edu	37	19	11598248	11598248	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:11598248C>T	uc002mrz.1	-	4	1083	c.1030G>A	c.(1030-1032)GGT>AGT	p.G344S		NM_138783	NP_620138	Q96CK0	ZN653_HUMAN	zinc finger protein 653	344					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCGGGGACACCGCTGCCTGCT	0.657													26	24					0	0	0	0
SYCE2	256126	broad.mit.edu	37	19	13029104	13029104	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:13029104C>A	uc002mvr.2	-	2	78	c.63G>T	c.(61-63)TTG>TTT	p.L21F		NM_001105578	NP_001099048	Q6PIF2	SYCE2_HUMAN	synaptonemal complex central element protein 2	21					cell division	central element					0						TGCTCTCCCCCAAGGGCTGCG	0.602													13	41					1.05317e-09	1.11998e-09	1	0
B3GNT3	10331	broad.mit.edu	37	19	17922878	17922878	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:17922878G>A	uc002nhk.1	+	3	1151	c.1066G>A	c.(1066-1068)GAT>AAT	p.D356N	B3GNT3_uc002nhl.1_Missense_Mutation_p.D356N|B3GNT3_uc010ebd.1_Missense_Mutation_p.D356N|B3GNT3_uc010ebe.1_Missense_Mutation_p.D356N	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	356	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						GCTCATGTGGGATGCGCTGAA	0.587													21	45					0	0	0	0
LSM4	25804	broad.mit.edu	37	19	18420497	18420497	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:18420497C>T	uc002niq.2	-	4	490	c.319G>A	c.(319-321)GCT>ACT	p.A107T		NM_012321	NP_036453	Q9Y4Z0	LSM4_HUMAN	U6 snRNA-associated Sm-like protein 4	107					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|mRNA processing|RNA splicing	cytosol|U6 snRNP	protein binding|RNA binding				0						CCTCGGCCAGCGCCGCCCATG	0.682													9	40					0	0	0	0
HAPLN4	404037	broad.mit.edu	37	19	19372352	19372352	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:19372352G>A	uc002nmb.2	-	2	79	c.24C>T	c.(22-24)CTC>CTT	p.L8L	HAPLN4_uc002nmc.2_Silent_p.L8L	NM_023002	NP_075378	Q86UW8	HPLN4_HUMAN	hyaluronan and proteoglycan link protein 4	8					cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			pancreas(1)	1			Epithelial(12;0.00575)			CGCCGGGACCGAGGGCCGCCC	0.766													4	10					0	0	0	0
C19orf47	126526	broad.mit.edu	37	19	40842076	40842076	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:40842076C>T	uc002oni.3	-	4	275	c.274G>A	c.(274-276)GTG>ATG	p.V92M	C19orf47_uc002ong.2_Translation_Start_Site|C19orf47_uc002onh.2_Missense_Mutation_p.V25M	NM_178830	NP_849152	Q8N9M1	CS047_HUMAN	hypothetical protein LOC126526	92										ovary(1)|skin(1)	2			Lung(22;0.000636)			ACCACGGTCACGCCCAGCTCA	0.572													6	41					0	0	0	0
CEACAM6	4680	broad.mit.edu	37	19	42260722	42260722	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:42260722C>T	uc002orm.2	+	2	428	c.279C>T	c.(277-279)CCC>CCT	p.P93P		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	93	Ig-like V-type.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		CCCCAGGGCCCGCATACAGTG	0.458													72	103					0	0	0	0
PSG1	5669	broad.mit.edu	37	19	43382154	43382154	+	Missense_Mutation	SNP	C	T	T	rs142473373		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:43382154C>T	uc002ovb.2	-	2	479	c.341G>A	c.(340-342)CGG>CAG	p.R114Q	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.R114Q|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.R114Q|PSG1_uc010eio.1_Missense_Mutation_p.R114Q|PSG1_uc002oux.1_Missense_Mutation_p.R43Q|PSG1_uc002ouy.1_Missense_Mutation_p.R114Q|PSG1_uc002ouz.1_Missense_Mutation_p.R114Q|PSG1_uc002ova.1_Missense_Mutation_p.R114Q|PSG1_uc002ovc.2_Missense_Mutation_p.R114Q|PSG1_uc002ovd.1_Missense_Mutation_p.R114Q	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	114	Ig-like V-type.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				TGCGTCCTCCCGGGTGACATT	0.453													149	136					0	0	0	0
HIF3A	64344	broad.mit.edu	37	19	46832529	46832529	+	Silent	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:46832529C>G	uc002peh.2	+	12	1535	c.1506C>G	c.(1504-1506)CTC>CTG	p.L502L	HIF3A_uc002peg.3_Silent_p.L502L|HIF3A_uc002pei.3_Silent_p.L446L|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Silent_p.L446L|HIF3A_uc010xxy.1_Silent_p.L433L|HIF3A_uc002pel.2_Silent_p.L500L|HIF3A_uc010xxz.1_Silent_p.L451L	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	502	NTAD.|ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		ACTTCCAGCTCAACGCCAGCG	0.587													17	81					0	0	0	0
NUCB1	4924	broad.mit.edu	37	19	49422529	49422529	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:49422529G>A	uc002plb.3	+	10	1060	c.988G>A	c.(988-990)GGG>AGG	p.G330R	NUCB1_uc002pla.2_Missense_Mutation_p.G330R|NUCB1_uc002plc.2_Missense_Mutation_p.G330R|NUCB1_uc002pld.2_5'UTR	NM_006184	NP_006175	Q02818	NUCB1_HUMAN	nucleobindin 1 precursor	330						ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|membrane|microtubule cytoskeleton	calcium ion binding|DNA binding				0		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000171)|all cancers(93;0.000333)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0244)		TGGGGACACCGGGGAGGGCTG	0.577													6	37					0	0	0	0
CCDC155	147872	broad.mit.edu	37	19	49910549	49910549	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:49910549C>T	uc002pnm.1	+	11	1103	c.929C>T	c.(928-930)TCT>TTT	p.S310F	CCDC155_uc010emx.1_Missense_Mutation_p.S283F	NM_144688	NP_653289	Q8N6L0	CC155_HUMAN	coiled-coil domain containing 155	310	Potential.					integral to membrane	calcium ion binding			ovary(1)|central_nervous_system(1)	2						ACCATCCTCTCTGAGGTAAGG	0.572													3	21					0	0	0	0
NAPSA	9476	broad.mit.edu	37	19	50861932	50861932	+	Missense_Mutation	SNP	A	T	T	rs138846093		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:50861932A>T	uc002prx.2	-	9	1194	c.1141T>A	c.(1141-1143)TAT>AAT	p.Y381N	NR1H2_uc002prv.3_Intron	NM_004851	NP_004842	O96009	NAPSA_HUMAN	napsin A preproprotein	381					proteolysis	extracellular region	aspartic-type endopeptidase activity				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00743)|GBM - Glioblastoma multiforme(134;0.0183)		ACGGCCACATACGTCCCCAAG	0.677													4	13					0	0	0	0
ZNF667	63934	broad.mit.edu	37	19	56953259	56953259	+	Silent	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr19:56953259G>T	uc002qnd.2	-	5	1267	c.1105C>A	c.(1105-1107)CGG>AGG	p.R369R	ZNF667_uc010etl.2_Silent_p.R151R|ZNF667_uc002qne.2_Silent_p.R369R|ZNF667_uc010etm.2_Silent_p.R312R	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	369	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		GTTGAAAGCCGCCTGAAGAAC	0.378													24	24					7.92952e-12	8.59283e-12	1	0
ASXL2	55252	broad.mit.edu	37	2	25978930	25978930	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:25978930G>A	uc002rgs.2	-	9	1214	c.993C>T	c.(991-993)TTC>TTT	p.F331F	ASXL2_uc002rgt.1_Silent_p.F71F	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	331					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTGAAGTGAAGAATTCATTGT	0.453													12	76					0	0	0	0
CENPA	1058	broad.mit.edu	37	2	27015013	27015013	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:27015013C>T	uc002rhr.2	+	2	298	c.115C>T	c.(115-117)CAA>TAA	p.Q39*	CENPA_uc002rht.2_RNA|CENPA_uc002rhs.2_Nonsense_Mutation_p.Q39*	NM_001809	NP_001800	P49450	CENPA_HUMAN	centromere protein A isoform a	39					CenH3-containing nucleosome assembly at centromere|establishment of mitotic spindle orientation|interspecies interaction between organisms|kinetochore assembly|mitotic prometaphase|protein localization to chromosome, centromeric region	condensed nuclear chromosome kinetochore|cytosol|nucleoplasm|nucleosome	chromatin binding|DNA binding|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTCCTCCCATCAACACAGTCG	0.512													7	16					0	0	0	0
CAD	790	broad.mit.edu	37	2	27463149	27463149	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:27463149G>A	uc002rji.2	+	35	5675	c.5513G>A	c.(5512-5514)CGC>CAC	p.R1838H	CAD_uc010eyw.2_Missense_Mutation_p.R1775H	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	1838	Linker.				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	GAAAGACCCCGCCGTGGCATC	0.443													15	112					0	0	0	0
SLC30A3	7781	broad.mit.edu	37	2	27480162	27480162	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:27480162C>T	uc002rjk.2	-	5	823	c.637G>A	c.(637-639)GAG>AAG	p.E213K	SLC30A3_uc002rjj.2_Silent_p.Q58Q|SLC30A3_uc010ylh.1_Missense_Mutation_p.E208K	NM_003459	NP_003450	Q99726	ZNT3_HUMAN	solute carrier family 30 (zinc transporter),	213	Cytoplasmic (Potential).				regulation of sequestering of zinc ion	cell junction|integral to plasma membrane|late endosome|membrane fraction|synaptic vesicle membrane	zinc transporting ATPase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGTGCATACTCTGCTCCCCTA	0.672													8	17					0	0	0	0
STRN	6801	broad.mit.edu	37	2	37078179	37078179	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:37078179C>T	uc002rpn.2	-	16	2059	c.2050G>A	c.(2050-2052)GAA>AAA	p.E684K	STRN_uc010ezx.2_Missense_Mutation_p.E647K	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	684	WD 4.				dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				TGCCTGTCTTCATGAGCAGTG	0.328													14	64					0	0	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656665	40656665	+	Silent	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:40656665C>G	uc002rrx.2	-	1	780	c.756G>C	c.(754-756)GCG>GCC	p.A252A	SLC8A1_uc002rry.2_Silent_p.A252A|SLC8A1_uc002rrz.2_Silent_p.A252A|SLC8A1_uc002rsa.2_Silent_p.A252A|SLC8A1_uc002rsd.3_Silent_p.A252A|SLC8A1_uc002rsb.1_Silent_p.A252A|SLC8A1_uc010fan.1_Silent_p.A252A|SLC8A1_uc002rsc.1_Silent_p.A252A	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	252	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GTCTCCTATCCGCTACCCAAG	0.443													18	107					0	0	0	0
ATP6V1E2	90423	broad.mit.edu	37	2	46739793	46739793	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:46739793C>G	uc002ruy.2	-	2	1172	c.58G>C	c.(58-60)GAG>CAG	p.E20Q	ATP6V1E2_uc002ruz.2_Missense_Mutation_p.E20Q	NM_080653	NP_542384	Q96A05	VATE2_HUMAN	ATPase, H+ transporting, lysosomal 31kDa, V1	20					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting two-sector ATPase complex, catalytic domain	proton-transporting ATPase activity, rotational mechanism			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.151)			GCTTCCTGCTCAATGAAAGCC	0.507													10	53					0	0	0	0
MSH2	4436	broad.mit.edu	37	2	47656948	47656948	+	Missense_Mutation	SNP	C	T	T	rs63750496		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:47656948C>T	uc002rvy.1	+	7	1212	c.1144C>T	c.(1144-1146)CGT>TGT	p.R382C	MSH2_uc010yoh.1_Missense_Mutation_p.R316C|MSH2_uc002rvz.2_Missense_Mutation_p.R382C|MSH2_uc010fbg.2_Missense_Mutation_p.R192C	NM_000251	NP_000242	P43246	MSH2_HUMAN	mutS homolog 2	382					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding|Y-form DNA binding	p.?(1)		large_intestine(33)|haematopoietic_and_lymphoid_tissue(6)|endometrium(4)|ovary(3)|cervix(2)|central_nervous_system(2)|stomach(1)|small_intestine(1)|breast(1)|skin(1)|prostate(1)	55		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AGATTTACTTCGTCGATTCCC	0.328			D|Mis|N|F|S		colorectal|endometrial|ovarian	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				10	44					0	0	0	0
LRRTM1	347730	broad.mit.edu	37	2	80530153	80530153	+	Silent	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:80530153C>G	uc002sok.1	-	2	1062	c.792G>C	c.(790-792)TCG>TCC	p.S264S	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	264	LRR 8.|Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						TCTCGTTGCCCGACAAGTCCA	0.607										HNSCC(69;0.2)			8	44					0	0	0	0
LRRTM1	347730	broad.mit.edu	37	2	80530267	80530267	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:80530267G>A	uc002sok.1	-	2	948	c.678C>T	c.(676-678)TTC>TTT	p.F226F	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	226	LRR 6.|Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						GGAAGTGGGCGAAGTTCACCT	0.582										HNSCC(69;0.2)			17	87					0	0	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612													3	7					0	0	0	0
KYNU	8942	broad.mit.edu	37	2	143798151	143798151	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:143798151G>A	uc002tvl.2	+	13	1326	c.1196G>A	c.(1195-1197)CGG>CAG	p.R399Q	KYNU_uc010fnm.2_Missense_Mutation_p.R399Q	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	399					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	GTAGAGGAGCGGGGGTGCCAG	0.408													9	48					0	0	0	0
RIF1	55183	broad.mit.edu	37	2	152293769	152293769	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:152293769C>T	uc002txm.2	+	13	1517	c.1387C>T	c.(1387-1389)CCG>TCG	p.P463S	RIF1_uc002txl.2_Missense_Mutation_p.P463S|RIF1_uc010fnv.1_Missense_Mutation_p.P427S|RIF1_uc002txn.2_Missense_Mutation_p.P463S|RIF1_uc002txo.2_Missense_Mutation_p.P463S|RIF1_uc010zby.1_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	463					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		ATTGGAACATCCGTTAATCAG	0.338													11	52					0	0	0	0
PLA2R1	22925	broad.mit.edu	37	2	160801458	160801458	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:160801458G>A	uc002ube.1	-	28	4310	c.4103C>T	c.(4102-4104)CCG>CTG	p.P1368L	PLA2R1_uc010zcp.1_Missense_Mutation_p.P1366L	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	1368	Extracellular (Potential).|C-type lectin 8.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						TTCTTGACACGGGGATAGCTG	0.428													12	92					0	0	0	0
SCN1A	6323	broad.mit.edu	37	2	166856246	166856246	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:166856246A>G	uc010zcz.1	-	22	4310	c.4292T>C	c.(4291-4293)GTT>GCT	p.V1431A	SCN1A_uc002udo.3_Missense_Mutation_p.V1311A|SCN1A_uc010fpk.2_Missense_Mutation_p.V1283A	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1442	III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TCTGGAATCAACTGCTGCATA	0.308													12	84					0	0	0	0
LRP2	4036	broad.mit.edu	37	2	170101321	170101321	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:170101321G>A	uc002ues.2	-	22	3525	c.3312C>T	c.(3310-3312)CAC>CAT	p.H1104H	LRP2_uc010zdf.1_Silent_p.H967H	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1104	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AAGCAGGTGCGTGGGTGGGGC	0.537													16	97					0	0	0	0
HAT1	8520	broad.mit.edu	37	2	172809472	172809472	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:172809472C>T	uc002uhi.2	+	4	338	c.262C>T	c.(262-264)CGT>TGT	p.R88C	HAT1_uc010fqi.2_Intron|HAT1_uc002uhj.2_Missense_Mutation_p.R3C	NM_003642	NP_003633	O14929	HAT1_HUMAN	histone acetyltransferase 1	88					chromatin silencing at telomere|DNA packaging	cytoplasm|nuclear matrix|nucleoplasm	histone acetyltransferase activity|protein binding			large_intestine(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.216)			AACAATGTTCCGTGTTGAATA	0.313													10	45					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179403830	179403830	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:179403830C>G	uc010zfg.1	-	302	91352	c.91128G>C	c.(91126-91128)TGG>TGC	p.W30376C	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.W24071C|TTN_uc010zfi.1_Missense_Mutation_p.W24004C|TTN_uc010zfj.1_Missense_Mutation_p.W23879C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31303							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTGTCTGACCCACTTGTCAG	0.498													9	57					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179424911	179424911	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:179424911A>G	uc010zfg.1	-	275	78468	c.78244T>C	c.(78244-78246)TTC>CTC	p.F26082L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.F19777L|TTN_uc010zfi.1_Missense_Mutation_p.F19710L|TTN_uc010zfj.1_Missense_Mutation_p.F19585L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27009							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGGTAGGAACACTGGATCT	0.463													17	65					0	0	0	0
DNAH7	56171	broad.mit.edu	37	2	196891589	196891589	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:196891589C>G	uc002utj.3	-	7	663	c.562G>C	c.(562-564)GTA>CTA	p.V188L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	188	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AAATCCAGTACGTGTTCTAGC	0.353													3	42					0	0	0	0
PSMD1	5707	broad.mit.edu	37	2	231947609	231947609	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:231947609G>A	uc002vrn.1	+	13	1557	c.1426G>A	c.(1426-1428)GGT>AGT	p.G476S	PSMD1_uc002vrm.1_Missense_Mutation_p.G476S|PSMD1_uc010fxu.1_Missense_Mutation_p.G340S	NM_002807	NP_002798	Q99460	PSMD1_HUMAN	proteasome 26S non-ATPase subunit 1	476	PC 3.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding			ovary(1)|skin(1)	2		Ovarian(221;0.000626)|Medulloblastoma(418;0.0109)|Renal(207;0.0112)|Lung NSC(271;0.0538)|all_lung(227;0.0713)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;4e-26)|LUSC - Lung squamous cell carcinoma(224;0.0138)|Lung(119;0.0168)	Bortezomib(DB00188)	CGTTAGACACGGTGGCAGTCT	0.373													4	28					0	0	0	0
RAMP1	10267	broad.mit.edu	37	2	238785963	238785963	+	Silent	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:238785963C>A	uc002vxj.2	+	2	282	c.150C>A	c.(148-150)GCC>GCA	p.A50A		NM_005855	NP_005846	O60894	RAMP1_HUMAN	receptor activity-modifying protein 1 precursor	50	Extracellular (Potential).				intracellular protein transport|regulation of G-protein coupled receptor protein signaling pathway	integral to plasma membrane	protein transporter activity				0		Breast(86;0.000596)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;9.56e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.49e-11)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;8.49e-08)|BRCA - Breast invasive adenocarcinoma(100;0.00013)|Lung(119;0.0119)|LUSC - Lung squamous cell carcinoma(224;0.0288)	Pramlintide(DB01278)	ACATGGAGGCCGTCGGGGAGA	0.657													19	61					1.01871e-10	1.0956e-10	1	0
SCLY	51540	broad.mit.edu	37	2	239003069	239003069	+	Silent	SNP	C	T	T	rs149428035		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:239003069C>T	uc010fyv.2	+	10	1078	c.1014C>T	c.(1012-1014)TTC>TTT	p.F338F	SCLY_uc002vxm.3_Silent_p.F305F|SCLY_uc002vxn.2_3'UTR|SCLY_uc010znq.1_Silent_p.F132F|SCLY_uc010znr.1_Silent_p.F244F|SCLY_uc002vxp.3_5'Flank	NM_016510	NP_057594	Q96I15	SCLY_HUMAN	selenocysteine lyase	338					cellular amino acid metabolic process	cytosol	pyridoxal phosphate binding|selenocysteine lyase activity|transferase activity			ovary(2)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;1.37e-23)|OV - Ovarian serous cystadenocarcinoma(60;4.6e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;8.25e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000128)|Lung(119;0.0118)|LUSC - Lung squamous cell carcinoma(224;0.0285)		AGGCTGAATTCGGTCAGAAGA	0.448													5	93					0	0	0	0
MYEOV2	150678	broad.mit.edu	37	2	241066179	241066179	+	Missense_Mutation	SNP	C	T	T	rs140948790		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:241066179C>T	uc002vyu.1	-	5	560	c.560G>A	c.(559-561)CGG>CAG	p.R187Q		NM_138336	NP_612209	Q8WXC6	MYOV2_HUMAN	hypothetical protein LOC150678 isoform 1	Error:Variant_position_missing_in_Q8WXC6_after_alignment											0		all_epithelial(40;1.56e-11)|Breast(86;0.0002)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.81e-30)|all cancers(36;1.1e-27)|OV - Ovarian serous cystadenocarcinoma(60;2.74e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.54e-06)|Lung(119;0.00361)|LUSC - Lung squamous cell carcinoma(224;0.0153)|Colorectal(34;0.0202)|COAD - Colon adenocarcinoma(134;0.143)		TTGGTTCTTCCGTAAACTGTT	0.483													17	117					0	0	0	0
SNED1	25992	broad.mit.edu	37	2	241987826	241987826	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:241987826C>T	uc002wah.1	+	9	1368	c.1368C>T	c.(1366-1368)CCC>CCT	p.P456P		NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	456	EGF-like 5.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		GCGAGTGCCCCGAAGGCTTCA	0.662													4	9					0	0	0	0
COMMD7	149951	broad.mit.edu	37	20	31291246	31291246	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr20:31291246G>C	uc002wya.3	-	9	1158	c.541C>G	c.(541-543)CAG>GAG	p.Q181E	COMMD7_uc010ged.2_Missense_Mutation_p.Q180E|COMMD7_uc002wyb.2_3'UTR	NM_053041	NP_444269	Q86VX2	COMD7_HUMAN	COMM domain containing 7 isoform 1	181	COMM.				negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|tumor necrosis factor-mediated signaling pathway		NF-kappaB binding			breast(1)	1						CTGTAGAACTGAGGCAAGGTT	0.478													7	46					0	0	0	0
C20orf71	128861	broad.mit.edu	37	20	31813054	31813054	+	Splice_Site	SNP	G	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr20:31813054G>T	uc002wyr.2	+	4	744	c.536_splice	c.e4+1	p.E179_splice	C20orf71_uc002wys.2_Splice_Site_p.E143_splice	NM_178466	NP_848561	Q9BQP9	SPLC3_HUMAN	short long palate, lung and nasal epithelium							extracellular region	lipid binding			ovary(1)|skin(1)	2						TCCTCACTGAGTAAGACCCCA	0.547													9	84					0.00448238	0.00457878	1	0
GSS	2937	broad.mit.edu	37	20	33529522	33529522	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr20:33529522G>A	uc002xbg.2	-	6	682	c.602C>T	c.(601-603)TCA>TTA	p.S201L	GSS_uc010zun.1_Missense_Mutation_p.S73L|GSS_uc010zuo.1_Intron|GSS_uc010zup.1_Missense_Mutation_p.S132L|GSS_uc002xbh.2_RNA|GSS_uc010gez.1_Intron	NM_000178	NP_000169	P48637	GSHB_HUMAN	glutathione synthetase	201					nervous system development|response to oxidative stress|xenobiotic metabolic process	cytosol	ATP binding|glutathione binding|glutathione synthase activity|magnesium ion binding|protein homodimerization activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(18;0.035)		Glutathione(DB00143)|Glycine(DB00145)|L-Cysteine(DB00151)	TTACTTGGGTGAGCCGTAGAG	0.483													11	63					0	0	0	0
SEMG1	6406	broad.mit.edu	37	20	43836743	43836743	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr20:43836743C>G	uc002xni.2	+	2	862	c.805C>G	c.(805-807)CAG>GAG	p.Q269E	SEMG1_uc002xnj.2_Missense_Mutation_p.Q269E|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Missense_Mutation_p.Q269E	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	269	42 AA repeat 2.				insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				GAATCAACACCAGACAAAAAA	0.398													9	63					0	0	0	0
BMP7	655	broad.mit.edu	37	20	55777625	55777625	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr20:55777625G>A	uc010gip.1	-	3	1195	c.666C>T	c.(664-666)GGC>GGT	p.G222G	BMP7_uc010giq.1_Silent_p.G222G|BMP7_uc002xyc.2_Silent_p.G222G	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	222					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			ACACCAGCCAGCCCTCCTCCG	0.627													9	35					0	0	0	0
DSCAM	1826	broad.mit.edu	37	21	41416162	41416162	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr21:41416162C>T	uc002yyq.1	-	31	5678	c.5226G>A	c.(5224-5226)GCG>GCA	p.A1742A	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1742	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGCGGTTTCTCGCTGTGGGCC	0.602													8	24					0	0	0	0
TMPRSS2	7113	broad.mit.edu	37	21	42861456	42861456	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr21:42861456G>A	uc002yzj.2	-	4	437	c.303C>T	c.(301-303)GCC>GCT	p.A101A	TMPRSS2_uc010gor.2_Silent_p.A138A|TMPRSS2_uc010gos.1_Silent_p.A101A	NM_005656	NP_005647	O15393	TMPS2_HUMAN	transmembrane protease, serine 2 isoform 2	101	Helical; Signal-anchor for type II membrane protein; (Potential).				proteolysis	cytoplasm|extracellular region|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity		TMPRSS2/ERG(2499)|TMPRSS2/ETV1(24)	prostate(2523)|central_nervous_system(1)	2524		Prostate(19;4.48e-07)|all_epithelial(19;0.031)				GTAGGCCAGCGGCCAGCGCAG	0.592			T	ERG|ETV1|ETV4|ETV5	prostate 								14	30					0	0	0	0
ADARB1	104	broad.mit.edu	37	21	46596022	46596022	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr21:46596022G>A	uc002zgy.2	+	4	841	c.406G>A	c.(406-408)GAG>AAG	p.E136K	ADARB1_uc002zgr.2_Missense_Mutation_p.E136K|ADARB1_uc002zgs.2_RNA|ADARB1_uc002zgw.2_Missense_Mutation_p.E136K|ADARB1_uc002zgv.2_RNA|ADARB1_uc002zgt.2_Missense_Mutation_p.E136K|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_RNA|ADARB1_uc002zgu.2_RNA|ADARB1_uc011afo.1_Missense_Mutation_p.E185K	NM_015833	NP_056648	P78563	RED1_HUMAN	RNA-specific adenosine deaminase B1 isoform 2	136	DRBM 1.				adenosine to inosine editing|mRNA modification|mRNA processing|RNA processing	nucleoplasm|nucleus	double-stranded RNA adenosine deaminase activity|double-stranded RNA adenosine deaminase activity|double-stranded RNA binding|double-stranded RNA binding|metal ion binding|mRNA binding|RNA binding			skin(1)	1				Colorectal(79;0.115)		CCATGCTGCTGAGAAGGCCTT	0.542													9	43					0	0	0	0
PRAME	23532	broad.mit.edu	37	22	22892745	22892745	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr22:22892745A>C	uc002zwf.2	-	4	512	c.356T>G	c.(355-357)CTT>CGT	p.L119R	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Missense_Mutation_p.L103R|PRAME_uc010gtr.2_Missense_Mutation_p.L119R|PRAME_uc002zwg.2_Missense_Mutation_p.L119R|PRAME_uc002zwh.2_Missense_Mutation_p.L119R|PRAME_uc002zwi.2_Missense_Mutation_p.L119R|PRAME_uc002zwj.2_Missense_Mutation_p.L119R|PRAME_uc002zwk.2_Missense_Mutation_p.L119R	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	119					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		CAGCACTTGAAGTTTCCACCT	0.438													8	60					0	0	0	0
HSCB	150274	broad.mit.edu	37	22	29139936	29139936	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr22:29139936C>T	uc003aea.2	+	2	344	c.303C>T	c.(301-303)GTC>GTT	p.V101V	CHEK2_uc003adt.1_5'Flank|CHEK2_uc003adu.1_5'Flank|CHEK2_uc003adv.1_5'Flank|CHEK2_uc003adw.1_5'Flank|CHEK2_uc003adx.1_5'Flank|CHEK2_uc003ady.1_5'Flank|CHEK2_uc003adz.1_5'Flank	NM_172002	NP_741999	Q8IWL3	HSC20_HUMAN	J-type co-chaperone HSC20 precursor	101	J.				iron-sulfur cluster assembly|protein folding	mitochondrion	chaperone binding|heat shock protein binding|metal ion binding			kidney(1)	1						AGCGTCTTGTCCACCCAGATT	0.483													14	91					0	0	0	0
RFPL2	10739	broad.mit.edu	37	22	32586995	32586995	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr22:32586995G>A	uc003amg.3	-	5	1837	c.901C>T	c.(901-903)CGC>TGC	p.R301C	RFPL2_uc003ame.3_Missense_Mutation_p.R240C|RFPL2_uc003amf.3_Missense_Mutation_p.R211C|RFPL2_uc003amh.3_Missense_Mutation_p.R211C	NM_001098527	NP_001091997	O75678	RFPL2_HUMAN	ret finger protein-like 2 isoform 2	301	B30.2/SPRY.						zinc ion binding			skin(1)	1						TGTAACTTGCGGTCTACGAAG	0.517													12	38					0	0	0	0
TAB1	10454	broad.mit.edu	37	22	39826084	39826084	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr22:39826084G>A	uc003axt.2	+	11	1421	c.1372G>A	c.(1372-1374)GAC>AAC	p.D458N	TAB1_uc003axr.2_Missense_Mutation_p.D534N|TAB1_uc011aok.1_Missense_Mutation_p.D292N|TAB1_uc003axu.1_Intron	NM_006116	NP_006107	Q15750	TAB1_HUMAN	mitogen-activated protein kinase kinase kinase 7	458					activation of MAPK activity|activation of MAPKKK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane	catalytic activity|protein binding			breast(1)	1						CTCCAGCTCTGACGGAGGCCT	0.627													7	86					0	0	0	0
EFCAB6	64800	broad.mit.edu	37	22	44079707	44079707	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr22:44079707C>A	uc003bdy.1	-	12	1386	c.1171G>T	c.(1171-1173)GAA>TAA	p.E391*	EFCAB6_uc003bdz.1_Nonsense_Mutation_p.E239*|EFCAB6_uc010gzi.1_Nonsense_Mutation_p.E239*|EFCAB6_uc010gzk.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Nonsense_Mutation_p.E388*	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	391					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				ATGATGTTTTCCTTGTGAGAT	0.343													21	91					1.28384e-07	1.35516e-07	1	0
TUBGCP6	85378	broad.mit.edu	37	22	50660299	50660299	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr22:50660299G>A	uc003bkb.1	-	16	3001	c.2489C>T	c.(2488-2490)ACG>ATG	p.T830M	TUBGCP6_uc003bka.1_Translation_Start_Site|TUBGCP6_uc010har.1_Missense_Mutation_p.T822M|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hat.1_Missense_Mutation_p.T26M	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	830					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GCCCGGAGACGTGACCTGAAA	0.622													6	32					0	0	0	0
SBF1	6305	broad.mit.edu	37	22	50898068	50898068	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr22:50898068C>G	uc003blh.2	-	27	3714	c.3519G>C	c.(3517-3519)CAG>CAC	p.Q1173H	SBF1_uc011arx.1_Missense_Mutation_p.Q837H	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1173	Myotubularin phosphatase.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		CCTGGACACTCTGGGGCACGA	0.701													3	33					0	0	0	0
CAV3	859	broad.mit.edu	37	3	8787388	8787388	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:8787388C>T	uc003bra.2	+	2	358	c.291C>T	c.(289-291)TTC>TTT	p.F97F	C3orf32_uc003bqz.2_5'Flank|CAV3_uc003brb.2_Silent_p.F97F	NM_001234	NP_001225	P56539	CAV3_HUMAN	caveolin 3	97	Required for interaction with DAG1.		F -> C (in LQT9; increase in late sodium current).|Missing (in HYPCK).		cell growth|elevation of cytosolic calcium ion concentration|muscle organ development|negative regulation of cardiac muscle hypertrophy|negative regulation of cell size|negative regulation of MAP kinase activity|negative regulation of sarcomere organization|positive regulation of microtubule polymerization|regulation of skeletal muscle contraction|regulation of ventricular cardiomyocyte membrane repolarization|T-tubule organization	caveola|dystrophin-associated glycoprotein complex|Golgi membrane|neuromuscular junction|T-tubule	protein C-terminus binding|protein complex binding|protein complex scaffold|sodium channel regulator activity			lung(1)|breast(1)	2						GCATCTCCTTCTGCCACATCT	0.582													4	15					0	0	0	0
CACNA1D	776	broad.mit.edu	37	3	53700551	53700551	+	Missense_Mutation	SNP	G	A	A	rs148674323		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:53700551G>A	uc003dgv.3	+	7	1268	c.1105G>A	c.(1105-1107)GTG>ATG	p.V369M	CACNA1D_uc003dgu.3_Missense_Mutation_p.V369M|CACNA1D_uc003dgy.3_Missense_Mutation_p.V369M|CACNA1D_uc003dgw.3_Missense_Mutation_p.V16M	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	369	Extracellular (Potential).|I.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	CTGGACAGATGTGCTCTACTG	0.512													41	64					0	0	0	0
IFT57	55081	broad.mit.edu	37	3	107938325	107938325	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:107938325C>T	uc003dwx.3	-	2	555	c.307G>A	c.(307-309)GAG>AAG	p.E103K		NM_018010	NP_060480	Q9NWB7	IFT57_HUMAN	estrogen-related receptor beta like 1	103					activation of caspase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cilium|microtubule basal body	DNA binding|protein binding			ovary(1)|skin(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(3;0.0428)|Epithelial(53;0.246)			TGAGGCTGCTCAAAGGGACGT	0.418													6	82					0	0	0	0
SLC35A5	55032	broad.mit.edu	37	3	112300018	112300018	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:112300018G>C	uc003dze.2	+	6	1299	c.1054G>C	c.(1054-1056)GAC>CAC	p.D352H		NM_017945	NP_060415	Q9BS91	S35A5_HUMAN	solute carrier family 35, member A5	352						Golgi membrane|integral to membrane	nucleotide-sugar transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1						CCTGGTCTTTGACTTCAGGCC	0.453													12	86					0	0	0	0
RABL3	285282	broad.mit.edu	37	3	120424914	120424914	+	Missense_Mutation	SNP	A	C	C	rs151038439		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:120424914A>C	uc003edx.2	-	4	346	c.316T>G	c.(316-318)TTG>GTG	p.L106V		NM_173825	NP_776186	Q5HYI8	RABL3_HUMAN	RAB, member of RAS oncogene family-like 3	106	Small GTPase-like.				small GTPase mediated signal transduction		GTP binding				0				GBM - Glioblastoma multiforme(114;0.151)		CAACGACGCAAGTTTTGGGAG	0.383													10	39					0	0	0	0
DTX3L	151636	broad.mit.edu	37	3	122287708	122287708	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:122287708G>C	uc003efk.2	+	3	861	c.772G>C	c.(772-774)GAG>CAG	p.E258Q	DTX3L_uc010hrj.2_Intron	NM_138287	NP_612144	Q8TDB6	DTX3L_HUMAN	deltex 3-like	258					histone monoubiquitination|response to DNA damage stimulus	cytoplasm|nucleus	histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)	4				GBM - Glioblastoma multiforme(114;0.0459)		CAACTCAATAGAGAAAAGATT	0.373													3	33					0	0	0	0
CLSTN2	64084	broad.mit.edu	37	3	140167508	140167508	+	Missense_Mutation	SNP	G	A	A	rs148820533		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:140167508G>A	uc003etn.2	+	6	1125	c.935G>A	c.(934-936)CGG>CAG	p.R312Q	CLSTN2_uc003etm.2_Missense_Mutation_p.R312Q	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	312	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GGTTGTGACCGGGAGACCTAC	0.443										HNSCC(16;0.037)			22	236					0	0	0	0
FAM194A	131831	broad.mit.edu	37	3	150377925	150377925	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:150377925C>T	uc003eyg.2	-	14	1803	c.1746G>A	c.(1744-1746)GAG>GAA	p.E582E	FAM194A_uc003eyh.2_Silent_p.E436E	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	582										skin(2)|ovary(1)	3						GGATTGGAATCTCCTCAGGGT	0.463													10	129					0	0	0	0
MED12L	116931	broad.mit.edu	37	3	150908657	150908657	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:150908657G>A	uc003eyp.2	+	13	1945	c.1907G>A	c.(1906-1908)CGG>CAG	p.R636Q	MED12L_uc011bnz.1_Missense_Mutation_p.R496Q|MED12L_uc003eyn.2_Missense_Mutation_p.R636Q|MED12L_uc003eyo.2_Missense_Mutation_p.R636Q	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	636					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ACTCGGCCGCGGTCACCAGTA	0.502													7	62					0	0	0	0
MED12L	116931	broad.mit.edu	37	3	151129190	151129190	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:151129190C>G	uc003eyp.2	+	39	5968	c.5930C>G	c.(5929-5931)TCC>TGC	p.S1977C	MED12L_uc011bnz.1_Intron	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1977	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCCGCACATTCCAACCCCGTG	0.582													13	139					0	0	0	0
KCNAB1	7881	broad.mit.edu	37	3	156175266	156175266	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:156175266G>A	uc003far.2	+	4	446	c.382G>A	c.(382-384)GCC>ACC	p.A128T	KCNAB1_uc011bon.1_Missense_Mutation_p.A128T|KCNAB1_uc003fas.2_Missense_Mutation_p.A117T|KCNAB1_uc003fat.2_Missense_Mutation_p.A110T|KCNAB1_uc010hvt.1_Missense_Mutation_p.A110T|KCNAB1_uc011boo.1_Missense_Mutation_p.A4T	NM_172160	NP_751892	Q14722	KCAB1_HUMAN	potassium voltage-gated channel, shaker-related	128						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			ovary(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			GATGACCATCGCCTATGAAAG	0.473													17	152					0	0	0	0
ECT2	1894	broad.mit.edu	37	3	172474799	172474799	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:172474799G>A	uc003fii.2	+	4	375	c.237G>A	c.(235-237)ATG>ATA	p.M79I	ECT2_uc010hwv.1_Missense_Mutation_p.M110I|ECT2_uc003fih.2_Missense_Mutation_p.M78I|ECT2_uc003fij.1_Missense_Mutation_p.M79I|ECT2_uc003fik.1_Missense_Mutation_p.M79I|ECT2_uc003fil.1_Missense_Mutation_p.M110I	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	79					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			TTGTAAAGATGGAGTCAGTGG	0.328													74	107					0	0	0	0
MAP3K13	9175	broad.mit.edu	37	3	185198087	185198087	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:185198087G>C	uc010hyf.2	+	14	2835	c.2569G>C	c.(2569-2571)GAT>CAT	p.D857H	MAP3K13_uc011brt.1_Missense_Mutation_p.D650H|MAP3K13_uc011bru.1_Missense_Mutation_p.D713H|MAP3K13_uc003fpi.2_Missense_Mutation_p.D857H|MAP3K13_uc010hyg.2_Missense_Mutation_p.D547H	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	857					activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			CTCTGTGTCTGATGGAGAAGA	0.473													16	141					0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195481222	195481222	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:195481222C>T	uc011bto.1	-	20	15266	c.14806G>A	c.(14806-14808)GGG>AGG	p.G4936R	MUC4_uc010hzq.2_5'Flank|MUC4_uc003fuz.2_Missense_Mutation_p.G662R|MUC4_uc003fva.2_Missense_Mutation_p.G544R|MUC4_uc003fvb.2_Missense_Mutation_p.G580R|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Missense_Mutation_p.G580R|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Missense_Mutation_p.G544R|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Missense_Mutation_p.G628R|MUC4_uc011bti.1_Missense_Mutation_p.G628R|MUC4_uc011btj.1_Missense_Mutation_p.G805R|MUC4_uc011btk.1_Missense_Mutation_p.G544R|MUC4_uc011btl.1_Missense_Mutation_p.G573R|MUC4_uc011btm.1_Missense_Mutation_p.G753R|MUC4_uc011btn.1_Missense_Mutation_p.G544R|MUC4_uc003fvo.2_Missense_Mutation_p.G828R|MUC4_uc003fvp.2_Missense_Mutation_p.G777R	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1821					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AAGGTGCCCCCGTCACACTTG	0.652													25	44					0	0	0	0
WHSC2	7469	broad.mit.edu	37	4	1985365	1985365	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr4:1985365G>A	uc003gem.2	-	10	1633	c.1393C>T	c.(1393-1395)CCC>TCC	p.P465S	WHSC2_uc003gek.2_Missense_Mutation_p.P191S|WHSC2_uc003gel.2_Missense_Mutation_p.P379S|WHSC2_uc003gen.2_Missense_Mutation_p.P319S	NM_005663	NP_005654	Q9H3P2	NELFA_HUMAN	Wolf-Hirschhorn syndrome candidate 2 protein	454					multicellular organismal development|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0155)			GCCTTCTCGGGCCGCGTGACT	0.677													11	26					0	0	0	0
C4orf6	10141	broad.mit.edu	37	4	5528029	5528029	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr4:5528029G>A	uc003gii.2	+	2	428	c.253G>A	c.(253-255)GGT>AGT	p.G85S		NM_005750	NP_005741	Q99440	CD006_HUMAN	chromosome 4 open reading frame 6	85					nervous system development						0						GACTGTCTCCGGTGCTCACTC	0.438													6	40					0	0	0	0
EVC2	132884	broad.mit.edu	37	4	5624705	5624705	+	Missense_Mutation	SNP	C	T	T	rs144420242	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr4:5624705C>T	uc003gij.2	-	14	2114	c.2060G>A	c.(2059-2061)CGT>CAT	p.R687H	EVC2_uc011bwb.1_Missense_Mutation_p.R127H|EVC2_uc003gik.2_Missense_Mutation_p.R607H	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	687	Potential.					integral to membrane				large_intestine(3)|ovary(2)	5						CTGCTCCCTACGCTGCTCCCT	0.592													10	29					0	0	0	0
C4orf50	389197	broad.mit.edu	37	4	5961120	5961120	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr4:5961120C>T	uc003git.1	-	7	903	c.813G>A	c.(811-813)CCG>CCA	p.P271P		NM_207405	NP_997288	Q6ZRC1	CD050_HUMAN	hypothetical protein LOC389197	271										pancreas(2)|breast(1)	3						CTAACTCCAGCGGTGATTTAT	0.458													16	100					0	0	0	0
CSN3	1448	broad.mit.edu	37	4	71114847	71114847	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr4:71114847C>G	uc003hfe.3	+	4	278	c.220C>G	c.(220-222)CCA>GCA	p.P74A		NM_005212	NP_005203	P07498	CASK_HUMAN	casein kappa precursor	74						extracellular region	protein binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						AATTAATAATCCATATGTGCC	0.433													8	56					0	0	0	0
FRAS1	80144	broad.mit.edu	37	4	79460452	79460452	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr4:79460452G>A	uc003hlb.2	+	73	11743	c.11303G>A	c.(11302-11304)CGC>CAC	p.R3768H		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3763	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCCTAGGACCGCAATCAGCCA	0.438													14	72					0	0	0	0
GK2	2712	broad.mit.edu	37	4	80327860	80327860	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr4:80327860G>A	uc003hlu.2	-	1	1513	c.1495C>T	c.(1495-1497)CGT>TGT	p.R499C		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	499				R -> C (in Ref. 2; BAF84930).	glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GTGGCATAACGAATTTCACTT	0.478													12	77					0	0	0	0
GRID2	2895	broad.mit.edu	37	4	94377124	94377124	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr4:94377124A>C	uc011cdt.1	+	11	2115	c.1857A>C	c.(1855-1857)CAA>CAC	p.Q619H	GRID2_uc011cdu.1_Missense_Mutation_p.Q524H	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	619	Cytoplasmic (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TTGTACAACAAGGTAAGGAGC	0.353													11	50					0	0	0	0
INTU	27152	broad.mit.edu	37	4	128627931	128627931	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr4:128627931G>A	uc003ifk.1	+	12	2148	c.2078G>A	c.(2077-2079)AGA>AAA	p.R693K	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	693										ovary(1)	1						CCAACATGCAGAAGAACGCTT	0.438													18	85					0	0	0	0
INTU	27152	broad.mit.edu	37	4	128628077	128628077	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr4:128628077G>A	uc003ifk.1	+	12	2294	c.2224G>A	c.(2224-2226)GAA>AAA	p.E742K	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	742										ovary(1)	1						GAAGCAAAGAGAATCTCAGGG	0.473													22	119					0	0	0	0
MAP9	79884	broad.mit.edu	37	4	156281422	156281422	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr4:156281422C>A	uc003ios.2	-	7	1212	c.948G>T	c.(946-948)AAG>AAT	p.K316N	MAP9_uc011cin.1_Missense_Mutation_p.K291N|MAP9_uc010iqa.1_RNA|MAP9_uc003iot.1_Missense_Mutation_p.K315N	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	316	Potential.				cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		CCGCTTTTGCCTTTTCTTCTT	0.378													9	50					2.74318e-10	2.93912e-10	1	0
SDHAP3	728609	broad.mit.edu	37	5	1574406	1574406	+	RNA	SNP	T	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:1574406T>C	uc011cmd.1	-	3		c.440A>G			SDHAP3_uc011cme.1_RNA					Homo sapiens cDNA FLJ58919 complete cds, moderately similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC1.3.5.1).												0						CTCATCAATCTGCACCTGAGG	0.478													3	15					0	0	0	0
SEMA5A	9037	broad.mit.edu	37	5	9119159	9119159	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:9119159T>C	uc003jek.2	-	15	2588	c.1876A>G	c.(1876-1878)ACT>GCT	p.T626A		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	626	TSP type-1 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						TGCCTGGGAGTGGGGTTGCTG	0.667													9	38					0	0	0	0
MARCH6	10299	broad.mit.edu	37	5	10407240	10407240	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:10407240G>A	uc003jet.1	+	17	1662	c.1479G>A	c.(1477-1479)CTG>CTA	p.L493L	MARCH6_uc011cmu.1_Silent_p.L445L|MARCH6_uc003jeu.1_Silent_p.L191L|MARCH6_uc011cmv.1_Silent_p.L388L	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	493	Helical; (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						TTGTCCTCCTGATGCTTTGGC	0.408													26	293					0	0	0	0
PRDM9	56979	broad.mit.edu	37	5	23527576	23527576	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:23527576T>A	uc003jgo.2	+	11	2561	c.2379T>A	c.(2377-2379)AGT>AGA	p.S793R		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	793	C2H2-type 11.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ACCTCCTCAGTCACCAGAGGA	0.562										HNSCC(3;0.000094)			5	154					0	0	0	0
TARS	6897	broad.mit.edu	37	5	33448677	33448677	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:33448677C>T	uc003jhy.2	+	3	464	c.169C>T	c.(169-171)CGT>TGT	p.R57C	TARS_uc011cob.1_Missense_Mutation_p.R45C|TARS_uc010iup.1_Translation_Start_Site|TARS_uc011coc.1_Missense_Mutation_p.R45C|TARS_uc003jhz.2_Intron|TARS_uc011cod.1_Translation_Start_Site	NM_152295	NP_689508	P26639	SYTC_HUMAN	threonyl-tRNA synthetase	57					threonyl-tRNA aminoacylation	cytosol	ATP binding|protein homodimerization activity|threonine-tRNA ligase activity			ovary(2)	2					L-Threonine(DB00156)	TATTTACACACGTCTTGAGAT	0.343													8	85					0	0	0	0
SLC1A3	6507	broad.mit.edu	37	5	36686248	36686248	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:36686248G>A	uc003jkj.3	+	10	1982	c.1506G>A	c.(1504-1506)CTG>CTA	p.L502L	SLC1A3_uc011cox.1_Silent_p.L395L|SLC1A3_uc010iuy.2_Silent_p.L457L	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	502					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	GACATGAACTGAAGAACAGAG	0.498													20	198					0	0	0	0
C5orf42	65250	broad.mit.edu	37	5	37108457	37108457	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:37108457G>A	uc011cpa.1	-	51	9586	c.9355C>T	c.(9355-9357)CCC>TCC	p.P3119S	C5orf42_uc003jko.1_Missense_Mutation_p.P150S|C5orf42_uc003jkp.1_RNA|C5orf42_uc011coy.1_Missense_Mutation_p.P1637S|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.P2212S	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	3119										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			ATCGTCCAGGGACTCACCACA	0.423													6	91					0	0	0	0
MAST4	375449	broad.mit.edu	37	5	66398375	66398375	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:66398375C>T	uc003jut.1	+	8	583	c.515C>T	c.(514-516)TCT>TTT	p.S172F	MAST4_uc003jus.2_Missense_Mutation_p.S172F|MAST4_uc003juu.1_Missense_Mutation_p.S182F|MAST4_uc011cra.1_Missense_Mutation_p.S155F|MAST4_uc010ixa.2_RNA|MAST4_uc003juv.2_Missense_Mutation_p.S167F|MAST4_uc003juw.2_Missense_Mutation_p.S167F	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	364						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CCTGGACGTTCTCCCGCCTGC	0.373													16	59					0	0	0	0
TAF9	6880	broad.mit.edu	37	5	68660814	68660814	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:68660814C>T	uc003jwc.1	-	2	1083	c.751G>A	c.(751-753)GAT>AAT	p.D251N	TAF9_uc003jwa.2_Intron|TAF9_uc003jwb.2_Intron|TAF9_uc003jwd.1_Missense_Mutation_p.D251N|TAF9_uc003jwe.1_Missense_Mutation_p.D251N|TAF9_uc003jwf.1_Missense_Mutation_p.D251N	NM_003187	NP_003178	Q16594	TAF9_HUMAN	TAF9 RNA polymerase II, TATA box binding	251	Poly-Asp.				histone H3 acetylation|negative regulation of apoptosis|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of cell growth|positive regulation of response to cytokine stimulus|positive regulation of transcription from RNA polymerase II promoter|response to interleukin-1|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	MLL1 complex|PCAF complex|pre-snoRNP complex|STAGA complex|transcription factor TFIID complex|transcription factor TFTC complex	activating transcription factor binding|C2H2 zinc finger domain binding|p53 binding|transcription coactivator activity|transcription regulatory region DNA binding				0		Lung NSC(167;7.26e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.1e-56)|Epithelial(20;9.54e-53)|all cancers(19;2.2e-48)|Lung(70;0.0176)		tcatcatcatcatcttcaCGT	0.249													7	49					0	0	0	0
DMGDH	29958	broad.mit.edu	37	5	78338269	78338269	+	Nonsense_Mutation	SNP	G	A	A	rs143021634	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:78338269G>A	uc003kfs.2	-	7	1036	c.1030C>T	c.(1030-1032)CGA>TGA	p.R344*	DMGDH_uc011cte.1_Nonsense_Mutation_p.R194*|DMGDH_uc011ctf.1_Nonsense_Mutation_p.R143*|DMGDH_uc011ctg.1_Intron	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	344					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		TCCATGATTCGATCTAGATCA	0.423													11	64					0	0	0	0
ANKRD32	84250	broad.mit.edu	37	5	94014548	94014548	+	Silent	SNP	A	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:94014548A>G	uc003kkr.3	+	15	1943	c.1863A>G	c.(1861-1863)GGA>GGG	p.G621G	ANKRD32_uc003kks.2_5'UTR	NM_032290	NP_115666	Q9BQI6	ANR32_HUMAN	ankyrin repeat domain 32	621										ovary(2)	2		all_cancers(142;1.51e-09)|all_epithelial(76;4.68e-12)|all_lung(232;5.94e-05)|Ovarian(174;0.000953)|Lung NSC(167;0.00105)|Colorectal(57;0.122)|Lung SC(612;0.152)		all cancers(79;3.88e-18)		TATTGGCTGGAATTCTTGGAG	0.308													10	54					0	0	0	0
LNPEP	4012	broad.mit.edu	37	5	96314937	96314937	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:96314937C>G	uc003kmv.1	+	2	629	c.115C>G	c.(115-117)CTA>GTA	p.L39V	LNPEP_uc003kmw.1_Missense_Mutation_p.L25V	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	39	Cytoplasmic (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		TTTACATCCTCTAGAGCCTGA	0.498													11	74					0	0	0	0
FSTL4	23105	broad.mit.edu	37	5	132652228	132652228	+	Missense_Mutation	SNP	G	A	A	rs139711882	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:132652228G>A	uc003kyn.1	-	5	744	c.526C>T	c.(526-528)CGC>TGC	p.R176C		NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	176	EF-hand.					extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ACCAGGAGGCGCTTCTGGGAG	0.587											OREG0016777	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	38					0	0	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140769023	140769023	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:140769023C>T	uc003lkc.1	+	1	1572	c.1572C>T	c.(1570-1572)CGC>CGT	p.R524R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.R524R	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	524	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCAGCTGCGCGCCTTCGAAC	0.672													21	39					0	0	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140769043	140769043	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:140769043A>T	uc003lkc.1	+	1	1592	c.1592A>T	c.(1591-1593)CAG>CTG	p.Q531L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.Q531L	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	531	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCACACTGCAGGCCCGCGAC	0.677													18	31					0	0	0	0
TTC1	7265	broad.mit.edu	37	5	159437549	159437549	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:159437549C>T	uc003lxu.2	+	2	64	c.14C>T	c.(13-15)TCA>TTA	p.S5L		NM_003314	NP_003305	Q99614	TTC1_HUMAN	tetratricopeptide repeat domain 1	5					protein folding		unfolded protein binding			skin(1)	1	Renal(175;0.00196)	all_hematologic(541;0.00014)|Breast(839;0.0101)|all_neural(177;0.0281)|Medulloblastoma(196;0.0425)|Lung NSC(249;0.119)|all_lung(500;0.163)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	Epithelial(171;8.37e-05)|all cancers(165;0.000694)|OV - Ovarian serous cystadenocarcinoma(192;0.0402)		GGGGAGAAGTCAGAGAACTGT	0.463													7	44					0	0	0	0
OR2H2	7932	broad.mit.edu	37	6	29556072	29556072	+	Silent	SNP	T	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr6:29556072T>C	uc003nmr.1	+	1	390	c.351T>C	c.(349-351)GCT>GCC	p.A117A	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	117	Helical; Name=3; (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAGTGATGGCTTTTGATCGCT	0.587													3	86					0	0	0	0
PACSIN1	29993	broad.mit.edu	37	6	34499521	34499521	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr6:34499521C>T	uc003ojo.2	+	9	1388	c.1182C>T	c.(1180-1182)TAC>TAT	p.Y394Y	PACSIN1_uc003ojp.2_Silent_p.Y394Y	NM_020804	NP_065855	Q9BY11	PACN1_HUMAN	protein kinase C and casein kinase substrate in	394	SH3.				endocytosis		protein kinase activity				0						GGGCACTCTACGACTATGACG	0.647													30	135					0	0	0	0
ZNF76	7629	broad.mit.edu	37	6	35260716	35260716	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr6:35260716G>A	uc003oki.1	+	11	1429	c.1224G>A	c.(1222-1224)TCG>TCA	p.S408S	ZNF76_uc003okj.1_Silent_p.S408S	NM_003427	NP_003418	P36508	ZNF76_HUMAN	zinc finger protein 76 (expressed in testis)	408					regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTACCTTTCGGAGGTGAAGG	0.612													55	55					0	0	0	0
CPNE5	57699	broad.mit.edu	37	6	36714277	36714277	+	Missense_Mutation	SNP	C	T	T	rs150078502	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr6:36714277C>T	uc003omr.1	-	16	1163	c.1096G>A	c.(1096-1098)GTC>ATC	p.V366I	CPNE5_uc003omp.1_Missense_Mutation_p.V74I|CPNE5_uc010jwn.1_Missense_Mutation_p.V16I|CPNE5_uc003omq.1_Missense_Mutation_p.V16I	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	366	VWFA.									skin(1)	1						ATCTCTCCGACGGCAGTCAGC	0.622													4	59					0	0	0	0
ZNF292	23036	broad.mit.edu	37	6	87966228	87966228	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr6:87966228G>A	uc003plm.3	+	8	2922	c.2881G>A	c.(2881-2883)GGC>AGC	p.G961S		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	961					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		AACTGTGGAAGGCAGTGGTGA	0.428													18	47					0	0	0	0
C6orf165	154313	broad.mit.edu	37	6	88126412	88126412	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr6:88126412G>A	uc003plv.2	+	6	590	c.498G>A	c.(496-498)CAG>CAA	p.Q166Q	C6orf165_uc003plw.2_5'UTR|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Silent_p.Q166Q	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	166										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		TTTTTCCTCAGGCAGAGCTTG	0.338													25	12					0	0	0	0
GOPC	57120	broad.mit.edu	37	6	117890830	117890830	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr6:117890830C>T	uc003pxu.2	-	7	1212	c.982G>A	c.(982-984)GGA>AGA	p.G328R	GOPC_uc003pxq.1_Missense_Mutation_p.G101R|DCBLD1_uc003pxs.2_3'UTR|GOPC_uc003pxv.2_Missense_Mutation_p.G320R	NM_020399	NP_065132	Q9HD26	GOPC_HUMAN	golgi associated PDZ and coiled-coil motif	328	PDZ.				apical protein localization|cytoplasmic sequestering of CFTR protein|ER to Golgi vesicle-mediated transport|Golgi to plasma membrane transport|protein homooligomerization|protein transport	cell junction|dendrite|Golgi membrane|postsynaptic density|postsynaptic membrane|trans-Golgi network transport vesicle	cystic fibrosis transmembrane conductance regulator binding			ovary(1)	1		all_cancers(87;0.00844)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0363)|OV - Ovarian serous cystadenocarcinoma(136;0.0821)|all cancers(137;0.0976)		TGCAGCCCTCCGCATCTATCA	0.458			O	ROS1	glioblastoma								31	96					0	0	0	0
EYA4	2070	broad.mit.edu	37	6	133783571	133783571	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr6:133783571C>A	uc003qec.3	+	8	994	c.536C>A	c.(535-537)ACA>AAA	p.T179K	EYA4_uc011ecq.1_Missense_Mutation_p.T125K|EYA4_uc011ecr.1_Missense_Mutation_p.T125K|EYA4_uc003qed.3_Missense_Mutation_p.T179K|EYA4_uc003qee.3_Missense_Mutation_p.T156K|EYA4_uc011ecs.1_Missense_Mutation_p.T179K|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	179					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		GCCGTCTACACAGCCTACTCA	0.507													9	55					0.000274275	0.000281181	1	0
AMZ1	155185	broad.mit.edu	37	7	2752042	2752042	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr7:2752042A>C	uc003smr.1	+	7	1388	c.1027A>C	c.(1027-1029)ACC>CCC	p.T343P	AMZ1_uc003sms.1_Missense_Mutation_p.H286P|AMZ1_uc011jwa.1_Missense_Mutation_p.T92P	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	343							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		GTGGGAGGACACCCCGCCTGC	0.672													3	8					0	0	0	0
SDK1	221935	broad.mit.edu	37	7	4272924	4272924	+	Silent	SNP	G	A	A	rs144472783		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr7:4272924G>A	uc003smx.2	+	41	6004	c.5865G>A	c.(5863-5865)CCG>CCA	p.P1955P	SDK1_uc010kso.2_Silent_p.P1211P|SDK1_uc003smy.2_Silent_p.P442P|SDK1_uc003smz.2_Silent_p.P15P	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1955	Fibronectin type-III 13.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		AGGACATCCCGCGGAGCGCCA	0.597													10	50					0	0	0	0
C7orf31	136895	broad.mit.edu	37	7	25175685	25175685	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr7:25175685G>A	uc003sxn.1	-	10	2240	c.1679C>T	c.(1678-1680)TCA>TTA	p.S560L	C7orf31_uc003sxm.1_Missense_Mutation_p.S402L	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	560											0						TTCTAGAATTGATTTATGGAA	0.403													16	83					0	0	0	0
STARD3NL	83930	broad.mit.edu	37	7	38259205	38259205	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr7:38259205T>G	uc003tfr.2	+	7	741	c.593T>G	c.(592-594)CTT>CGT	p.L198R	STARD3NL_uc003tfs.2_Missense_Mutation_p.L198R|STARD3NL_uc003tft.2_Missense_Mutation_p.L180R	NM_032016	NP_114405	O95772	MENTO_HUMAN	MLN64 N-terminal homolog	198	Cytoplasmic (Potential).|MENTAL.					integral to membrane|late endosome membrane				ovary(1)	1						AGGGCAGCACTTATACCTGGT	0.418													8	84					0	0	0	0
MYL7	58498	broad.mit.edu	37	7	44179945	44179945	+	Missense_Mutation	SNP	G	A	A	rs142668114		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr7:44179945G>A	uc003tkg.2	-	4	287	c.275C>T	c.(274-276)ACG>ATG	p.T92M		NM_021223	NP_067046	Q01449	MLRA_HUMAN	myosin light chain 2a	92					actin filament-based movement|smooth muscle contraction	A band|myosin complex	ATPase activity, coupled|calcium ion binding|microfilament motor activity				0						CCCAAAGAGCGTGAGGAAGAC	0.527													10	71					0	0	0	0
CCT6A	908	broad.mit.edu	37	7	56124052	56124052	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr7:56124052G>C	uc003trl.1	+	5	723	c.559G>C	c.(559-561)GAT>CAT	p.D187H	PSPH_uc003trj.2_Intron|CCT6A_uc003trm.1_Missense_Mutation_p.D142H|CCT6A_uc011kcu.1_Missense_Mutation_p.D156H	NM_001762	NP_001753	P40227	TCPZ_HUMAN	chaperonin containing TCP1, subunit 6A isoform	187					'de novo' posttranslational protein folding	cytosol	ATP binding|unfolded protein binding			upper_aerodigestive_tract(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TGAACCTATTGATCTCTTCAT	0.343													10	68					0	0	0	0
SLC25A40	55972	broad.mit.edu	37	7	87476268	87476268	+	Silent	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr7:87476268G>A	uc003uje.2	-	8	978	c.627C>T	c.(625-627)TTC>TTT	p.F209F		NM_018843	NP_061331	Q8TBP6	S2540_HUMAN	mitochondrial carrier family protein	209	Helical; Name=4; (Potential).|Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			haematopoietic_and_lymphoid_tissue(1)	1	Esophageal squamous(14;0.00202)					TCCTACCTGAGAAAGGTACAT	0.378													11	56					0	0	0	0
PEX1	5189	broad.mit.edu	37	7	92136441	92136441	+	Splice_Site	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr7:92136441C>T	uc003uly.2	-	10	1767	c.1671_splice	c.e10-1	p.G557_splice	PEX1_uc011khr.1_Splice_Site_p.G349_splice|PEX1_uc010ley.2_Splice_Site_p.G557_splice|PEX1_uc011khs.1_Splice_Site_p.G235_splice|PEX1_uc011kht.1_Splice_Site	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1						microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			ATTCACTCCTCTGTAAAAAAT	0.403													4	21					0	0	0	0
COG5	10466	broad.mit.edu	37	7	107053006	107053006	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr7:107053006C>T	uc003ved.2	-	7	1228	c.703G>A	c.(703-705)GCC>ACC	p.A235T	COG5_uc003vec.2_Missense_Mutation_p.A235T|COG5_uc003vee.2_Missense_Mutation_p.A235T	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	235					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						TCAAGTCGGGCTCTTGCAATA	0.328													18	51					0	0	0	0
WNT16	51384	broad.mit.edu	37	7	120979112	120979112	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr7:120979112G>C	uc003vjw.2	+	4	1068	c.811G>C	c.(811-813)GAA>CAA	p.E271Q	WNT16_uc003vjv.2_Missense_Mutation_p.E261Q|WNT16_uc010lkl.2_Missense_Mutation_p.E55Q	NM_057168	NP_476509	Q9UBV4	WNT16_HUMAN	wingless-type MMTV integration site family,	271					anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|keratinocyte differentiation|keratinocyte proliferation|negative regulation of cell death|optic cup formation involved in camera-type eye development|oxidative stress-induced premature senescence|positive regulation of gene expression|positive regulation of JNK cascade|positive regulation of phosphatidylinositol 3-kinase cascade|replicative senescence|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			lung(2)|ovary(2)|large_intestine(1)	5	all_neural(327;0.117)					GCGCAGGAGAGAAAAAGATCA	0.368													6	24					0	0	0	0
PRKAG2	51422	broad.mit.edu	37	7	151261269	151261269	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr7:151261269C>T	uc003wkk.2	-	14	2090	c.1479G>A	c.(1477-1479)ACG>ACA	p.T493T	PRKAG2_uc003wki.2_Silent_p.T252T|PRKAG2_uc011kvl.1_Silent_p.T368T|PRKAG2_uc003wkj.2_Silent_p.T449T|PRKAG2_uc003wkl.2_Silent_p.T41T	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	493					ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		CCTGGGTCACCGTGATATCTA	0.398													5	91					0	0	0	0
SFTPC	6440	broad.mit.edu	37	8	22019379	22019379	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr8:22019379C>T	uc003xax.3	+	1	196	c.38C>T	c.(37-39)CCG>CTG	p.P13L	SFTPC_uc003xaw.3_Missense_Mutation_p.P62L|SFTPC_uc011kza.1_Missense_Mutation_p.P13L|SFTPC_uc003xaz.2_Missense_Mutation_p.P13L|SFTPC_uc003xay.3_Missense_Mutation_p.P13L	NM_003018	NP_003009	P11686	PSPC_HUMAN	surfactant protein C precursor	13					respiratory gaseous exchange	extracellular space					0				Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		ATGGAGAGCCCGCCGgtgagt	0.433													13	53					0	0	0	0
SLC39A14	23516	broad.mit.edu	37	8	22266000	22266000	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr8:22266000G>A	uc003xbq.3	+	3	623	c.448G>A	c.(448-450)GCT>ACT	p.A150T	SLC39A14_uc011kzg.1_Missense_Mutation_p.A150T|SLC39A14_uc003xbp.3_Missense_Mutation_p.A150T|SLC39A14_uc011kzh.1_Missense_Mutation_p.A150T	NM_001128431	NP_001121903	Q15043	S39AE_HUMAN	solute carrier family 39 (zinc transporter),	150	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lamellipodium|plasma membrane	zinc ion transmembrane transporter activity				0				Colorectal(74;0.019)|COAD - Colon adenocarcinoma(73;0.0731)		GCGGCCAAGCGCTGTTGAAGG	0.642													4	19					0	0	0	0
PRKDC	5591	broad.mit.edu	37	8	48798673	48798673	+	Silent	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr8:48798673C>T	uc003xqi.2	-	37	4665	c.4608G>A	c.(4606-4608)GCG>GCA	p.A1536A	PRKDC_uc003xqj.2_Silent_p.A1536A|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1536	Interaction with C1D.|Leucine-zipper.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TGGACAGCACCGCTGGGTTCA	0.527								NHEJ					17	23					0	0	0	0
XKR4	114786	broad.mit.edu	37	8	56436657	56436657	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr8:56436657G>C	uc003xsf.2	+	3	1856	c.1824G>C	c.(1822-1824)GAG>GAC	p.E608D		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	608						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CAGCATGGGAGAGACATGTTT	0.488													7	28					0	0	0	0
CHD7	55636	broad.mit.edu	37	8	61765187	61765187	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr8:61765187G>A	uc003xue.2	+	30	6502	c.6025G>A	c.(6025-6027)GAG>AAG	p.E2009K		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2009					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AAAATCTGATGAGAGTTTGGA	0.438													9	22					0	0	0	0
NACAP1	83955	broad.mit.edu	37	8	102381483	102381483	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr8:102381483C>T	uc003ykc.1	+	1	363	c.346C>T	c.(346-348)CGG>TGG	p.R116W	NACAP1_uc010mbs.1_RNA	NR_002182				SubName: Full=NACAP1 protein;												0						GAGCCCGCTTCGGATACCTAC	0.438													16	84					0	0	0	0
KIFC2	90990	broad.mit.edu	37	8	145698053	145698053	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr8:145698053C>T	uc003zcz.2	+	16	1890	c.1825C>T	c.(1825-1827)CGC>TGC	p.R609C	KIFC2_uc003zda.2_5'UTR	NM_145754	NP_665697	Q96AC6	KIFC2_HUMAN	kinesin family member C2	609	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GCTGACGCTGCGCGCGGCGTC	0.721													4	27					0	0	0	0
PHF2	5253	broad.mit.edu	37	9	96435940	96435940	+	Missense_Mutation	SNP	G	A	A	rs145764244	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr9:96435940G>A	uc004aub.2	+	18	2569	c.2422G>A	c.(2422-2424)GAC>AAC	p.D808N	PHF2_uc011lug.1_Missense_Mutation_p.D691N|PHF2_uc004auc.2_Missense_Mutation_p.D228N	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	808					liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		GCAGGCCTCCGACTCCTGCCT	0.667													8	55					0	0	0	0
GSN	2934	broad.mit.edu	37	9	124073041	124073041	+	Missense_Mutation	SNP	G	A	A	rs144099356	by1000genomes	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr9:124073041G>A	uc004blf.1	+	4	645	c.584G>A	c.(583-585)CGG>CAG	p.R195Q	GSN_uc004bld.1_Missense_Mutation_p.R144Q|GSN_uc010mvq.1_Missense_Mutation_p.R155Q|GSN_uc010mvr.1_Missense_Mutation_p.R155Q|GSN_uc010mvu.1_Missense_Mutation_p.R144Q|GSN_uc010mvt.1_Missense_Mutation_p.R144Q|GSN_uc010mvs.1_Missense_Mutation_p.R144Q|GSN_uc004ble.1_Missense_Mutation_p.R144Q|GSN_uc010mvv.1_Missense_Mutation_p.R144Q|GSN_uc011lyh.1_Missense_Mutation_p.R161Q|GSN_uc011lyi.1_Missense_Mutation_p.R144Q|GSN_uc011lyj.1_Missense_Mutation_p.R168Q|GSN_uc004blg.1_5'Flank	NM_000177	NP_000168	P06396	GELS_HUMAN	gelsolin isoform a precursor	195	Polyphosphoinositide binding (By similarity).				actin filament polymerization|actin filament severing|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|cilium morphogenesis	actin cytoskeleton|cytosol	actin binding|calcium ion binding|protein binding			breast(2)|ovary(1)	3						GTCAAAGGGCGGCGTGTGGTC	0.587													8	47					0	0	0	0
FCN2	2220	broad.mit.edu	37	9	137779204	137779204	+	Silent	SNP	G	A	A	rs150154280	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr9:137779204G>A	uc004cfg.1	+	8	895	c.885G>A	c.(883-885)TCG>TCA	p.S295S	FCN2_uc004cfh.1_Silent_p.S257S	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	295	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		ACTGGAAGTCGGGGAAAGGAT	0.537													45	16					0	0	0	0
KIAA0649	9858	broad.mit.edu	37	9	138376726	138376726	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr9:138376726G>C	uc004cfr.1	+	4	919	c.370G>C	c.(370-372)GAC>CAC	p.D124H		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	124						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		GCTAGATTCAGACAGTGATGA	0.612													71	49					0	0	0	0
SHROOM2	357	broad.mit.edu	37	X	9863269	9863269	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chrX:9863269G>A	uc004csu.1	+	4	1411	c.1321G>A	c.(1321-1323)GAC>AAC	p.D441N		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	441					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				CCTCTGTGCTGACAGCCTTGG	0.652													18	16					0	0	0	0
SCML2	10389	broad.mit.edu	37	X	18283829	18283829	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chrX:18283829A>G	uc004cyl.2	-	8	981	c.824T>C	c.(823-825)TTA>TCA	p.L275S	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_Missense_Mutation_p.L275S|SCML2_uc011miz.1_Missense_Mutation_p.L209S|SCML2_uc010nfc.2_Missense_Mutation_p.L11S	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	275					anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					CTGTGTTGGTAATATTAGAGT	0.418													13	27					0	0	0	0
CXorf58	254158	broad.mit.edu	37	X	23928433	23928433	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chrX:23928433C>T	uc004daz.1	+	2	358	c.14C>T	c.(13-15)TCA>TTA	p.S5L	APOO_uc004dax.2_5'Flank|APOO_uc004day.3_5'Flank|CXorf58_uc011mju.1_Missense_Mutation_p.S5L	NM_152761	NP_689974	Q96LI9	CX058_HUMAN	hypothetical protein LOC254158	5											0						AATCGTTCCTCAAATGTACCA	0.348													7	10					0	0	0	0
BRS3	680	broad.mit.edu	37	X	135572633	135572633	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chrX:135572633C>T	uc004ezv.1	+	2	925	c.776C>T	c.(775-777)GCC>GTC	p.A259V		NM_001727	NP_001718	P32247	BRS3_HUMAN	bombesin-like receptor 3	259	Cytoplasmic (Potential).				adult feeding behavior|glucose metabolic process|regulation of blood pressure	integral to membrane|plasma membrane	bombesin receptor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CAAAGCCATGCCCGTAAGCAG	0.388													3	42					0	0	0	0
AFF2	2334	broad.mit.edu	37	X	147924495	147924495	+	Silent	SNP	G	A	A	rs149177157	byFrequency	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chrX:147924495G>A	uc004fcp.2	+	6	1658	c.1179G>A	c.(1177-1179)TCG>TCA	p.S393S	AFF2_uc004fco.2_Silent_p.S360S|AFF2_uc004fcq.2_Silent_p.S389S|AFF2_uc004fcr.2_Silent_p.S360S|AFF2_uc011mxb.1_Silent_p.S364S|AFF2_uc004fcs.2_Silent_p.S360S|AFF2_uc011mxc.1_Silent_p.S34S	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	393					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					TATAGGAATCGCAGCATCTGA	0.333													41	23					0	0	0	0
TARBP1	6894	broad.mit.edu	37	1	234565343	234565358	+	Frame_Shift_Del	DEL	GAGAGGCACACCCATT	-	-			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr1:234565343_234565358delGAGAGGCACACCCATT	uc001hwd.2	-	16	2675_2690	c.2675_2690delAATGGGTGTGCCTCTC	c.(2674-2691)CAATGGGTGTGCCTCTCTfs	p.Q892fs		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	892_897					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity	p.W893*(1)		ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			CAACAGGAAAGAGAGGCACACCCATTGATCATGAAT	0.398													---	---	---							
Unknown	0	broad.mit.edu	37	12	24737258	24737263	+	5'Flank	DEL	CCCCCA	-	-			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:24737258_24737263delCCCCCA	uc001rgb.1	-											Homo sapiens cDNA FLJ32894 fis, clone TESTI2004994.																		CTTCGATTAGcccccacccccacccc	0.432													---	---	---							
PRICKLE1	144165	broad.mit.edu	37	12	42853994	42854008	+	In_Frame_Del	DEL	TGTACAGCCGCAGTC	-	-			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr12:42853994_42854008delTGTACAGCCGCAGTC	uc010skv.1	-	8	2386_2400	c.2099_2113delGACTGCGGCTGTACA	c.(2098-2115)AGACTGCGGCTGTACACC>ACC	p.RLRLY700del	PRICKLE1_uc001rnl.2_In_Frame_Del_p.RLRLY700del|PRICKLE1_uc010skw.1_In_Frame_Del_p.RLRLY700del|PRICKLE1_uc001rnm.2_In_Frame_Del_p.RLRLY700del|PRICKLE1_uc001rnk.1_5'Flank	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	700_704					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		TTATCGGGGGTGTACAGCCGCAGTCTGTCCTTGGG	0.502													---	---	---							
ZNF598	90850	broad.mit.edu	37	16	2049882	2049883	+	In_Frame_Ins	INS	-	TCC	TCC	rs141374045	by1000genomes	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:2049882_2049883insTCC	uc002cof.1	-	11	1682_1683	c.1667_1668insGGA	c.(1666-1668)GAC>GAGGAC	p.555_556insE	ZNF598_uc002coe.1_5'UTR	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	555_556						intracellular	zinc ion binding			lung(1)|breast(1)	2						CCGGGCCGCCGTCCTCCTCCTC	0.703													---	---	---							
HYDIN	54768	broad.mit.edu	37	16	70952161	70952162	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr16:70952161_70952162insT	uc002ezr.2	-	47	8081_8082	c.7953_7954insA	c.(7951-7956)AAAGAAfs	p.K2651fs		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2652_2653										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ATTTCCATTTCTTTTTTTTCAT	0.450													---	---	---							
CBX4	8535	broad.mit.edu	37	17	77808241	77808243	+	In_Frame_Del	DEL	GTG	-	-	rs3833850		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr17:77808241_77808243delGTG	uc002jxe.2	-	5	1361_1363	c.1198_1200delCAC	c.(1198-1200)CACdel	p.H400del		NM_003655	NP_003646	O00257	CBX4_HUMAN	chromobox homolog 4	400	His-rich.|Interaction with BMI1.				anti-apoptosis|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|PcG protein complex	enzyme binding|transcription corepressor activity			skin(2)	2			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			GGCCGACGGCgtggtggtggtgg	0.507													---	---	---							
Unknown	0	broad.mit.edu	37	18	14998942	14998942	+	IGR	DEL	G	-	-			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr18:14998942delG								ANKRD30B (146205 upstream) : LOC644669 (314613 downstream)																							GGGGCCCGTAGGGCAGGCCGT	0.657													---	---	---							
Unknown	0	broad.mit.edu	37	3	187141215	187141216	+	IGR	INS	-	A	A	rs80024997		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr3:187141215_187141216insA								RTP4 (51848 upstream) : SST (245480 downstream)																							acctgaaaaggaaaaaaaaagg	0.000													---	---	---							
FAM53C	51307	broad.mit.edu	37	5	137680780	137680781	+	Frame_Shift_Ins	INS	-	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr5:137680780_137680781insG	uc003lcv.2	+	4	873_874	c.403_404insG	c.(403-405)CGGfs	p.R135fs	FAM53C_uc003lcw.2_Frame_Shift_Ins_p.R135fs|FAM53C_uc011cyq.1_Intron|FAM53C_uc011cyr.1_Intron	NM_001135647	NP_001129119	Q9NYF3	FA53C_HUMAN	hypothetical protein LOC51307	135										ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			GCCGGTGTGGCGGCCCGCCCCC	0.683													---	---	---							
STK19	8859	broad.mit.edu	37	6	31939825	31939826	+	Frame_Shift_Ins	INS	-	G	G			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr6:31939825_31939826insG	uc003nyv.2	+	1	180_181	c.52_53insG	c.(52-54)CGGfs	p.R18fs	DOM3Z_uc003nyo.1_5'UTR|DOM3Z_uc003nyp.1_5'UTR|DOM3Z_uc003nyq.1_5'UTR|DOM3Z_uc003nyr.1_5'UTR|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'UTR|STK19_uc003nyt.2_5'UTR|DOM3Z_uc003nyu.1_5'UTR|STK19_uc011dow.1_Frame_Shift_Ins_p.R18fs|STK19_uc011dox.1_5'UTR|STK19_uc003nyw.2_Frame_Shift_Ins_p.R18fs|STK19_uc010jtn.1_5'Flank	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	18						nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			skin(4)	4						GCGACAGTGGCGGGCAAACCCC	0.634													---	---	---							
TNRC18	84629	broad.mit.edu	37	7	5401259	5401259	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	f32b53d5-28b2-4d09-bff7-af5bca3d3e33	g.chr7:5401259delG	uc003soi.3	-	14	4976	c.4627delC	c.(4627-4629)CGCfs	p.R1543fs		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	1543							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		CCTCTCTTGCGGGGGGGCGAC	0.692													---	---	---							
TARBP1	6894	broad.mit.edu	37	1	234565343	234565358	+	Frame_Shift_Del	DEL	GAGAGGCACACCCATT	-	-			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr1:234565343_234565358delGAGAGGCACACCCATT	uc001hwd.2	-	16	2675_2690	c.2675_2690delAATGGGTGTGCCTCTC	c.(2674-2691)CAATGGGTGTGCCTCTCTfs	p.Q892fs		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	892_897					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity	p.W893*(1)		ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			CAACAGGAAAGAGAGGCACACCCATTGATCATGAAT	0.398													---	---	---							
PRICKLE1	144165	broad.mit.edu	37	12	42853994	42854008	+	In_Frame_Del	DEL	TGTACAGCCGCAGTC	-	-			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:42853994_42854008delTGTACAGCCGCAGTC	uc010skv.1	-	8	2386_2400	c.2099_2113delGACTGCGGCTGTACA	c.(2098-2115)AGACTGCGGCTGTACACC>ACC	p.RLRLY700del	PRICKLE1_uc001rnl.2_In_Frame_Del_p.RLRLY700del|PRICKLE1_uc010skw.1_In_Frame_Del_p.RLRLY700del|PRICKLE1_uc001rnm.2_In_Frame_Del_p.RLRLY700del|PRICKLE1_uc001rnk.1_5'Flank	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	700_704					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		TTATCGGGGGTGTACAGCCGCAGTCTGTCCTTGGG	0.502													---	---	---							
Unknown	0	broad.mit.edu	37	12	80729949	80729949	+	IGR	DEL	T	-	-			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr12:80729949delT								PPP1R12A (400714 upstream) : PTPRQ (108177 downstream)																							AGCGGTGATCTTTTTTTTTTT	0.373													---	---	---							
ZNF219	51222	broad.mit.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	-	-	rs3841049		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr14:21560753_21560758delGAGGCT	uc001vzr.2	-	3	1119_1124	c.698_703delAGCCTC	c.(697-705)CAGCCTCCA>CCA	p.QP233del	ZNF219_uc001vzs.2_In_Frame_Del_p.QP233del|ZNF219_uc010aik.1_In_Frame_Del_p.QP233del	NM_016423	NP_057507	Q9P2Y4	ZN219_HUMAN	zinc finger protein 219	233_234					negative regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|histamine receptor activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;9.86e-11)|Epithelial(56;1.27e-08)|all cancers(55;6.06e-08)	GBM - Glioblastoma multiforme(265;0.0191)		ggctggggtggaggctgaggctgagg	0.335											OREG0022565	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	---	---	---							
HYDIN	54768	broad.mit.edu	37	16	70952161	70952162	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr16:70952161_70952162insT	uc002ezr.2	-	47	8081_8082	c.7953_7954insA	c.(7951-7956)AAAGAAfs	p.K2651fs		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2652_2653										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ATTTCCATTTCTTTTTTTTCAT	0.450													---	---	---							
Unknown	0	broad.mit.edu	37	17	76488937	76488938	+	IGR	INS	-	TTTTTTTTT	TTTTTTTTT	rs35406046		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr17:76488937_76488938insTTTTTTTTT								DNAH17 (20081 upstream) : CYTH1 (181193 downstream)																							GGCCTGGATGGttttttttttt	0.307													---	---	---							
CBX4	8535	broad.mit.edu	37	17	77808241	77808243	+	In_Frame_Del	DEL	GTG	-	-	rs3833850		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr17:77808241_77808243delGTG	uc002jxe.2	-	5	1361_1363	c.1198_1200delCAC	c.(1198-1200)CACdel	p.H400del		NM_003655	NP_003646	O00257	CBX4_HUMAN	chromobox homolog 4	400	His-rich.|Interaction with BMI1.				anti-apoptosis|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|PcG protein complex	enzyme binding|transcription corepressor activity			skin(2)	2			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			GGCCGACGGCgtggtggtggtgg	0.507													---	---	---							
Unknown	0	broad.mit.edu	37	18	14998942	14998942	+	IGR	DEL	G	-	-			TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr18:14998942delG								ANKRD30B (146205 upstream) : LOC644669 (314613 downstream)																							GGGGCCCGTAGGGCAGGCCGT	0.657													---	---	---							
Unknown	0	broad.mit.edu	37	2	206981155	206981155	+	RNA	DEL	C	-	-	rs71410864		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr2:206981155delC	uc002vbc.1	-	1		c.1134delG								Homo sapiens cDNA FLJ35491 fis, clone SMINT2008625, moderately similar to GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR.																		AGGCAGGGCGCGGCAGGTGCC	0.627													---	---	---							
Unknown	0	broad.mit.edu	37	3	190433401	190433402	+	IGR	INS	-	AG	AG	rs146341792	by1000genomes	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr3:190433401_190433402insAG								IL1RAP (57558 upstream) : LOC647309 (137124 downstream)																							TAAAATCAGAAAAAGTTCATTG	0.297													---	---	---							
Unknown	0	broad.mit.edu	37	4	19815895	19815895	+	IGR	DEL	A	-	-	rs145239076		TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr4:19815895delA								None (None upstream) : SLIT2 (439340 downstream)																							TCTGGGCTGTaaaaaaaaaaa	0.214													---	---	---							
Unknown	0	broad.mit.edu	37	5	180165983	180165984	+	IGR	INS	-	C	C	rs2054696	by1000genomes	TCGA-CV-5970-01A-11D-1683-08	TCGA-CV-5970-11A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	a52dc15f-d06d-46ed-a73e-aa004a2a736a	6499af1c-b9e1-461b-a24b-fc5619748717	g.chr5:180165983_180165984insC								FLT4 (89359 upstream) : OR2Y1 (139 downstream)																							tgttccccccgccaccaaaaaa	0.188													---	---	---							
