Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
P2RY2	5029	broad.mit.edu	37	11	72945937	72945937	+	Missense_Mutation	SNP	C	C	T			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr11:72945937C>T	uc021qna.1	+	0	733	c.733C>T	c.(733-735)Cgc>Tgc	p.R245C	P2RY2_uc001otk.3_Missense_Mutation_p.R245C|P2RY2_uc001otj.3_Missense_Mutation_p.R245C|P2RY2_uc001otl.3_Missense_Mutation_p.R245C	NM_176072	NP_788086	P41231	P2RY2_HUMAN	Homo sapiens purinergic receptor P2Y, G-protein coupled, 2 (P2RY2), transcript variant 1, mRNA.	245					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			endometrium(3)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(3)|lung(8)|ovary(2)|prostate(1)|skin(2)|urinary_tract(2)	25					Suramin(DB04786)	CAAGTCCGTGCGCACCATCGC	0.642000													10	18					0	0	1	0	0
CACNA2D1	781	broad.mit.edu	37	7	81588631	81588631	+	Missense_Mutation	SNP	T	T	G			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr7:81588631T>G	uc003uhr.1	-	37	3375	c.3119A>C	c.(3118-3120)tAc>tCc	p.Y1040S	CACNA2D1_uc011kgy.1_Missense_Mutation_p.Y252S	NM_000722	NP_000713	P54289	CA2D1_HUMAN	Homo sapiens calcium channel, voltage-dependent, alpha 2/delta subunit 1 (CACNA2D1), mRNA.	1052						voltage-gated calcium channel complex	metal ion binding			breast(2)|cervix(1)|endometrium(1)|kidney(2)|large_intestine(15)|liver(1)|lung(42)|ovary(6)|pancreas(1)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	81					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	CCCTTTTCGGTATCTGGGTTG	0.358000													32	105					0	0	1	0	0
ERCC3	2071	broad.mit.edu	37	2	128051174	128051174	+	Missense_Mutation	SNP	C	C	G			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr2:128051174C>G	uc002toh.1	-	1	244	c.149G>C	c.(148-150)gGc>gCc	p.G50A	ERCC3_uc002toe.1_5'Flank|ERCC3_uc002tof.1_5'UTR|ERCC3_uc002tog.1_5'UTR|ERCC3_uc010flx.1_5'UTR|ERCC3_uc010yzh.1_Non-coding_Transcript|ERCC3_uc010fly.3_Missense_Mutation_p.G50A	NM_000122	NP_000113	P19447	ERCC3_HUMAN	Homo sapiens excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) (ERCC3), mRNA.	50					DNA topological change|cell cycle checkpoint|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			breast(2)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(6)|lung(12)|ovary(2)|pancreas(1)|prostate(1)|skin(1)|urinary_tract(1)	31	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		CACTTTGGTGCCTGACTCATC	0.597000			"""Mis, S"""			"""skin basal cell, skin squamous cell, melanoma"""		Nucleotide excision repair (NER)	Xeroderma Pigmentosum				5	65					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195488976	195488976	+	Missense_Mutation	SNP	G	G	A			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr3:195488976G>A	uc021xjp.1	-	13	14650	c.14494C>T	c.(14494-14496)Cgc>Tgc	p.R4832C	MUC4_uc003fuz.3_Missense_Mutation_p.R430C|MUC4_uc003fva.3_Missense_Mutation_p.R312C|MUC4_uc003fvb.3_Missense_Mutation_p.R348C|MUC4_uc003fvc.3_Non-coding_Transcript|MUC4_uc003fvd.3_Non-coding_Transcript|MUC4_uc003fve.3_Missense_Mutation_p.R348C|MUC4_uc010hzr.3_Non-coding_Transcript|MUC4_uc021xjm.1_Missense_Mutation_p.R341C|MUC4_uc021xjn.1_Missense_Mutation_p.R521C|MUC4_uc021xjo.1_Missense_Mutation_p.R312C|MUC4_uc021xjg.1_Missense_Mutation_p.R312C|MUC4_uc021xjh.1_Non-coding_Transcript|MUC4_uc021xji.1_Missense_Mutation_p.R396C|MUC4_uc021xjj.1_Missense_Mutation_p.R396C|MUC4_uc021xjk.1_Missense_Mutation_p.R573C|MUC4_uc021xjl.1_Missense_Mutation_p.R312C|MUC4_uc003fvo.3_Missense_Mutation_p.R596C|MUC4_uc003fvp.3_Missense_Mutation_p.R545C	NM_018406	NP_060876	Q99102	MUC4_HUMAN	Homo sapiens mucin 4, cell surface associated (MUC4), transcript variant 1, mRNA.	1589					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity			NS(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(5)|lung(23)|ovary(3)|prostate(8)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	51	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		CCCTCCGTGCGGTTCTGGTAC	0.741000													3	31					0	0	1	0	0
TSPAN33	340348	broad.mit.edu	37	7	128804350	128804350	+	Silent	SNP	C	C	A			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr7:128804350C>A	uc003vop.2	+	4	508	c.399C>A	c.(397-399)gcC>gcA	p.A133A	TSPAN33_uc003voq.2_5'Flank	NM_178562	NP_848657	Q86UF1	TSN33_HUMAN	Homo sapiens tetraspanin 33 (TSPAN33), mRNA.	133						integral to membrane				NS(1)|endometrium(1)|large_intestine(3)|lung(7)|ovary(1)|prostate(1)	14						TCAACAATGCCATTGTGCACT	0.498000											OREG0018304	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	40	23					1.5731e-28	1.87274e-28	1	1	0
LAMB1	3912	broad.mit.edu	37	7	107569606	107569606	+	Missense_Mutation	SNP	T	T	A			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr7:107569606T>A	uc003vev.2	-	28	5023	c.4862A>T	c.(4861-4863)gAa>gTa	p.E1621V	LAMB1_uc003vew.2_Missense_Mutation_p.E1597V	NM_002291	NP_002282	P07942	LAMB1_HUMAN	Homo sapiens laminin, beta 1 (LAMB1), mRNA.	1597	Domain I.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			NS(3)|breast(1)|central_nervous_system(2)|cervix(1)|endometrium(4)|kidney(4)|large_intestine(11)|lung(37)|ovary(6)|prostate(5)|skin(5)|upper_aerodigestive_tract(3)	82					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTCCAGAGCTTCCTTTACCAT	0.403000													7	218					0	0	1	0	0
AKD1	221264	broad.mit.edu	37	6	109931580	109931580	+	Silent	SNP	T	T	C	rs56107923	byFrequency	TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr6:109931580T>C	uc003ptn.2	-	16	1907	c.1830A>G	c.(1828-1830)gaA>gaG	p.E610E		NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	Homo sapiens adenylate kinase domain containing 1 (AKD1), transcript variant 1, mRNA.	610					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity	p.E610E(1)|p.E130E(1)		endometrium(2)|large_intestine(6)|lung(6)|ovary(1)|skin(1)|stomach(2)|urinary_tract(2)	20						CTCCAAGGACTTCCTGTAAGA	0.328000													3	73					0	0	1	0	0
SMARCC2	6601	broad.mit.edu	37	12	56558430	56558430	+	Silent	SNP	A	A	C			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr12:56558430A>C	uc001skb.3	-	26	3331	c.3225T>G	c.(3223-3225)ggT>ggG	p.G1075G	SMARCC2_uc001skd.3_Splice_Site_p.A1106_splice|SMARCC2_uc001ska.3_Splice_Site_p.D1106_splice|SMARCC2_uc001skc.3_Splice_Site_p.A1105_splice|SMARCC2_uc010sqf.2_Splice_Site_p.D995_splice	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 (SMARCC2), transcript variant 1, mRNA.	1075	Pro-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	SWI/SNF complex|nBAF complex|npBAF complex|nucleoplasm	DNA binding|protein binding|transcription coactivator activity	p.G1075G(3)		breast(1)|central_nervous_system(3)|endometrium(6)|kidney(3)|large_intestine(3)|lung(20)|ovary(1)|skin(2)|soft_tissue(1)|upper_aerodigestive_tract(1)	41			OV - Ovarian serous cystadenocarcinoma(18;0.123)			AAGGAGCATTACCCGCCACGC	0.567000													5	39					0	0	1	0	0
RBM3	5935	broad.mit.edu	37	X	48434994	48434994	+	Splice_Site	SNP	T	T	G			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chrX:48434994T>G	uc004dkf.2	+	5	647	c.413_splice	c.e5+2	p.R138_splice		NM_006743	NP_006734	P98179	RBM3_HUMAN	Homo sapiens RNA binding motif (RNP1, RRM) protein 3 (RBM3), mRNA.	138	Gly-rich.				positive regulation of translation	dendrite|nucleus	RNA binding|nucleotide binding	p.?(1)		endometrium(1)|large_intestine(1)|lung(1)|ovary(1)	4						TAATGGCAGGTGGGTAGCCAA	0.517000													3	19					0	0	1	0	0
OR4N2	390429	broad.mit.edu	37	14	20296302	20296302	+	Missense_Mutation	SNP	C	C	A			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr14:20296302C>A	uc010tkv.2	+	0	695	c.695C>A	c.(694-696)gCa>gAa	p.A232E		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	Homo sapiens olfactory receptor, family 4, subfamily N, member 2 (OR4N2), mRNA.	232					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|liver(1)|lung(32)|ovary(2)|prostate(1)|skin(2)|stomach(2)	52	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCTTCTGAGGCAAAAAACAAG	0.493000													19	98					1.01871e-10	1.18455e-10	1	1	0
ARID1B	57492	broad.mit.edu	37	6	157100005	157100005	+	Silent	SNP	C	C	A			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr6:157100005C>A	uc003qqp.3	+	0	942	c.942C>A	c.(940-942)ggC>ggA	p.G314G	ARID1B_uc003qqo.3_Silent_p.G314G|ARID1B_uc003qqn.3_Silent_p.G314G	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	Homo sapiens AT rich interactive domain 1B (SWI1-like) (ARID1B), transcript variant 1, mRNA.	314	Gly-rich.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			NS(2)|breast(5)|central_nervous_system(4)|endometrium(12)|kidney(4)|large_intestine(11)|lung(30)|ovary(3)|pancreas(1)|prostate(4)|skin(2)|urinary_tract(3)	81		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		gcggcggcggcggaggaggag	0.756000													3	14					2.56e-06	2.84444e-06	1	1	0
EXOC3L4	91828	broad.mit.edu	37	14	103570687	103570687	+	Silent	SNP	G	G	A			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr14:103570687G>A	uc001ymk.3	+	3	1321	c.1245G>A	c.(1243-1245)caG>caA	p.Q415Q		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	Homo sapiens exocyst complex component 3-like 4 (EXOC3L4), mRNA.	415										cervix(2)|endometrium(2)|lung(4)|ovary(1)|skin(1)	10						AGGTGCTGCAGGGCCTCTACC	0.667000													3	52					0	0	1	0	0
AGBL5	60509	broad.mit.edu	37	2	27276801	27276801	+	Missense_Mutation	SNP	G	G	T			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr2:27276801G>T	uc002rie.3	+	3	642	c.425G>T	c.(424-426)cGt>cTt	p.R142L	AGBL5_uc002rid.3_Missense_Mutation_p.R142L|AGBL5_uc002rif.3_Non-coding_Transcript	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	Homo sapiens ATP/GTP binding protein-like 5 (AGBL5), transcript variant 1, mRNA.	142					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding	p.H141Y(1)		breast(2)|central_nervous_system(1)|cervix(1)|endometrium(4)|large_intestine(5)|lung(8)|ovary(3)|pancreas(1)|prostate(2)|skin(1)	28	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTTGTTCATCGTTTCGTGGAG	0.542000													3	73					0.004672	0.00497021	1	1	0
MGC70870	403340	broad.mit.edu	37	GL000205.1	116981	116981	+	RNA	SNP	C	C	T			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chrGL000205.1:116981C>T	uc002kgk.4	+	0		c.359C>T								Homo sapiens C-terminal binding protein 2 pseudogene (MGC70870), non-coding RNA.																		AAACGGGTTTCATCACCTTAA	0.493000													3	8					0	0	1	0	0
TRAPPC8	22878	broad.mit.edu	37	18	29497627	29497627	+	Missense_Mutation	SNP	G	G	T			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr18:29497627G>T	uc002kxc.4	-	2	720	c.356C>A	c.(355-357)aCt>aAt	p.T119N	TRAPPC8_uc002kxb.4_Missense_Mutation_p.T65N|TRAPPC8_uc002kxd.4_Non-coding_Transcript|TRAPPC8_uc021uio.1_Missense_Mutation_p.T119N|TRAPPC8_uc002kxe.2_Missense_Mutation_p.T119N	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	Homo sapiens trafficking protein particle complex 8 (TRAPPC8), mRNA.	119					ER to Golgi vesicle-mediated transport	cis-Golgi network				breast(2)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(6)|large_intestine(7)|liver(2)|lung(13)|ovary(6)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	47						CCATGGAGTAGTGGCTAAAAT	0.318000													3	50					0.115264	0.117616	1	1	0
CRX	1406	broad.mit.edu	37	19	48343201	48343201	+	Missense_Mutation	SNP	G	G	T			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr19:48343201G>T	uc002phq.4	+	3	1081	c.877G>T	c.(877-879)Gcc>Tcc	p.A293S		NM_000554	NP_000545	O43186	CRX_HUMAN	Homo sapiens cone-rod homeobox (CRX), mRNA.	293					organ morphogenesis|response to stimulus|visual perception		leucine zipper domain binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(11)|prostate(2)|urinary_tract(1)	23		all_cancers(25;2.76e-09)|all_epithelial(76;7.01e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000266)|all cancers(93;0.000788)|Epithelial(262;0.0226)|GBM - Glioblastoma multiforme(486;0.0521)		GGATCAGAGTGCCTGGAAGTT	0.537000													3	47					0.184627	0.184627	1	1	0
LMOD2	442721	broad.mit.edu	37	7	123302918	123302918	+	Silent	SNP	T	T	C			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr7:123302918T>C	uc003vky.2	+	1	1435	c.1278T>C	c.(1276-1278)ccT>ccC	p.P426P		NM_207163	NP_997046	Q6P5Q4	LMOD2_HUMAN	Homo sapiens leiomodin 2 (cardiac) (LMOD2), mRNA.	426	Pro-rich.					cytoskeleton	actin binding|tropomyosin binding										ctcctccccctcctcctcctc	0.592000													3	21					0	0	1	0	0
CNOT1	23019	broad.mit.edu	37	16	58566190	58566190	+	Missense_Mutation	SNP	T	T	C			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr16:58566190T>C	uc002env.3	-	40	6298	c.6005A>G	c.(6004-6006)aAt>aGt	p.N2002S	CNOT1_uc002enw.3_Non-coding_Transcript|CNOT1_uc002enu.4_Missense_Mutation_p.N1997S|CNOT1_uc002ent.3_5'UTR|CNOT1_uc010vik.2_Missense_Mutation_p.N959S	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 1, mRNA.	2002					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				breast(1)|central_nervous_system(2)|endometrium(9)|haematopoietic_and_lymphoid_tissue(4)|kidney(7)|large_intestine(24)|lung(25)|ovary(4)|prostate(6)|skin(3)|upper_aerodigestive_tract(2)	87				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		CTCAGGTGCATTGAGTTCCAA	0.398000													4	117					0	0	1	0	0
MAFA	389692	broad.mit.edu	37	8	144511742	144511742	+	Missense_Mutation	SNP	G	G	A			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr8:144511742G>A	uc003yyc.2	-	0	861	c.835C>T	c.(835-837)Cgg>Tgg	p.R279W		NM_201589	NP_963883	Q8NHW3	MAFA_HUMAN	Homo sapiens v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian) (MAFA), mRNA.	279					insulin secretion|nitric oxide mediated signal transduction|response to glucose stimulus	nucleus	protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|lung(1)|upper_aerodigestive_tract(2)	4	all_cancers(97;7.39e-11)|all_epithelial(106;5.44e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.237)			AGAATGTGCCGCTGCTGCACC	0.642000										HNSCC(29;0.082)			3	25					0	0	1	0	0
NKX2-5	1482	broad.mit.edu	37	5	172659920	172659920	+	Silent	SNP	C	C	G			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr5:172659920C>G	uc003mcm.2	-	1	856	c.627G>C	c.(625-627)ccG>ccC	p.P209P	NKX2-5_uc010jjt.2_3'UTR|NKX2-5_uc011dfe.2_3'UTR	NM_004387	NP_004378	P52952	NKX25_HUMAN	Homo sapiens NK2 homeobox 5 (NKX2-5), transcript variant 1, mRNA.	209	Ala/Pro-rich.				adult heart development|atrial cardiac muscle cell development|atrial septum morphogenesis|heart looping|hemopoiesis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell apoptosis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|outflow tract septum morphogenesis|pharyngeal system development|positive regulation of calcium ion transport via voltage-gated calcium channel activity|positive regulation of cardioblast differentiation|positive regulation of cell proliferation|positive regulation of heart contraction|positive regulation of neuron differentiation|positive regulation of sodium ion transport|positive regulation of survival gene product expression|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription via serum response element binding|regulation of cardiac muscle contraction|right ventricular cardiac muscle tissue morphogenesis|septum secundum development|spleen development|thyroid gland development|vasculogenesis|ventricular septum morphogenesis		chromatin binding|protein heterodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|serum response element binding|transcription factor binding			breast(1)|central_nervous_system(1)|large_intestine(2)|lung(7)|prostate(1)	12	Renal(175;0.000159)|Lung NSC(126;0.00229)|all_lung(126;0.004)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			gcggcggcggcgggggcAGCC	0.701000													4	55					0	0	1	0	0
HSFY1P1	27437	broad.mit.edu	37	22	17309566	17309566	+	RNA	SNP	G	G	A			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr22:17309566G>A	uc010gqr.1	+	1		c.722G>A								Homo sapiens heat shock transcription factor, Y-linked 1 pseudogene 1 (HSFY1P1), non-coding RNA.																		CTTTAGAGCAGGGGCTAACAC	0.318000													4	9					0	0	1	0	0
GRIK5	2901	broad.mit.edu	37	19	42525580	42525580	+	Missense_Mutation	SNP	G	G	A			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr19:42525580G>A	uc002osj.1	-	13	1779	c.1744C>T	c.(1744-1746)Cgc>Tgc	p.R582C	GRIK5_uc002osi.1_Missense_Mutation_p.R154C|GRIK5_uc010eib.1_Missense_Mutation_p.R501C	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	Homo sapiens glutamate receptor, ionotropic, kainate 5 (GRIK5), mRNA.	582						cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity	p.R582C(3)		breast(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(8)|liver(1)|lung(11)|ovary(2)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)	35		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	ATGTGGGGGCGTGCCCGCAGG	0.652000													13	33					0	0	1	0	0
LAMB1	3912	broad.mit.edu	37	7	107569607	107569607	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr7:107569607C>A	uc003vev.2	-	28	5022	c.4861G>T	c.(4861-4863)Gaa>Taa	p.E1621*	LAMB1_uc003vew.2_Nonsense_Mutation_p.E1597*	NM_002291	NP_002282	P07942	LAMB1_HUMAN	Homo sapiens laminin, beta 1 (LAMB1), mRNA.	1597	Domain I.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			NS(3)|breast(1)|central_nervous_system(2)|cervix(1)|endometrium(4)|kidney(4)|large_intestine(11)|lung(37)|ovary(6)|prostate(5)|skin(5)|upper_aerodigestive_tract(3)	82					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCCAGAGCTTCCTTTACCATA	0.403000													6	217					2.0095e-06	2.28352e-06	1	1	0
KIF26A	26153	broad.mit.edu	37	14	104639376	104639376	+	Missense_Mutation	SNP	G	G	A			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr14:104639376G>A	uc001yos.4	+	7	1483	c.1483G>A	c.(1483-1485)Gcc>Acc	p.A495T		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	Homo sapiens kinesin family member 26A (KIF26A), mRNA.	495	Kinesin-motor.				blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			autonomic_ganglia(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(8)|pancreas(1)|prostate(2)|skin(4)|upper_aerodigestive_tract(2)	21		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		CGTGCCCTGCGCCATCTCCTG	0.682000													6	59					0	0	1	0	0
UNQ2565	0	broad.mit.edu	37	22	24656905	24656905	+	RNA	SNP	G	G	A			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr22:24656905G>A	uc002zzs.4	+	4		c.2185G>A								Homo sapiens POM121 membrane glycoprotein-like 9, pseudogene (POM121L9P), non-coding RNA.																		CTGTTTCAACGCCACCACCAG	0.602000													6	109					0	0	1	0	0
C10orf140	387640	broad.mit.edu	37	10	21805502	21805502	+	Missense_Mutation	SNP	T	T	C			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr10:21805502T>C	uc009xkd.3	-	3	3503	c.1250A>G	c.(1249-1251)gAg>gGg	p.E417G	AK055656_uc001iqp.1_Non-coding_Transcript|C10orf140_uc021pnx.1_Missense_Mutation_p.E417G	NM_207371	NP_997254	Q1XH10	DLN1_HUMAN	Homo sapiens chromosome 10 open reading frame 140 (C10orf140), mRNA.	336						nucleus	nucleotide binding			kidney(1)|large_intestine(8)|lung(9)|ovary(1)|soft_tissue(1)|urinary_tract(1)	21						ctcctctccctcctcctcctc	0.622000													3	23					0	0	1	0	0
TRIM49C	642612	broad.mit.edu	37	11	89768577	89768577	+	Silent	SNP	C	C	T	rs138885754	by1000genomes	TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr11:89768577C>T	uc010rua.2	+	2	527	c.198C>T	c.(196-198)acC>acT	p.T66T		NM_001195234	NP_001182163	P0CI26	T49L2_HUMAN	Homo sapiens tripartite motif containing 49-like 2 (TRIM49L2), mRNA.	66						intracellular	zinc ion binding			endometrium(3)|kidney(1)|lung(4)	8						ACCTCAAAACCAACATTCATT	0.458000													7	81					0	0	1	0	0
PRIM2	5558	broad.mit.edu	37	6	57393114	57393114	+	Missense_Mutation	SNP	A	A	G			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr6:57393114A>G	uc003pdx.3	+	8	851	c.764A>G	c.(763-765)cAt>cGt	p.H255R		NM_000947	NP_000938	P49643	PRI2_HUMAN	Homo sapiens primase, DNA, polypeptide 2 (58kDa) (PRIM2), mRNA.	255					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding	p.S254S(2)		NS(1)|central_nervous_system(1)|endometrium(2)|kidney(3)|large_intestine(7)|lung(34)|prostate(6)|stomach(4)|upper_aerodigestive_tract(1)	59				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		ttttaaaGTCATTCCTACACT	0.269000													11	65					0	0	1	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274432	39274432	+	Missense_Mutation	SNP	C	C	T			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr17:39274432C>T	uc002hvz.3	-	0	175	c.136G>A	c.(136-138)Gtg>Atg	p.V46M		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	Homo sapiens keratin associated protein 4-11 (KRTAP4-11), mRNA.	46	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].		Missing (in allele KAP4.14).			keratin filament				endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|lung(8)|prostate(5)|skin(1)	33		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			CAGCTGGACACACAGCAGCTG	0.677000													4	72					0	0	1	0	0
MEF2B	100271849	broad.mit.edu	37	19	19258537	19258537	+	Silent	SNP	A	A	C			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr19:19258537A>C	uc002nlp.2	-	5	1090	c.363T>G	c.(361-363)ggT>ggG	p.G121G	MEF2B_uc002nll.2_Silent_p.G121G|MEF2B_uc010xqo.1_Silent_p.G121G|MEF2B_uc010xqp.1_Silent_p.G121G|MEF2B_uc002nlo.2_Silent_p.G121G|MEF2B_uc002nlk.2_Silent_p.G124G	NM_005919	NP_005910			Homo sapiens MEF2BNB-MEF2B readthrough (MEF2BNB-MEF2B), transcript variant 1, mRNA.									p.G120R(1)		breast(1)|haematopoietic_and_lymphoid_tissue(21)|large_intestine(1)|lung(2)|skin(1)|upper_aerodigestive_tract(2)	28			OV - Ovarian serous cystadenocarcinoma(5;0.00011)|Epithelial(12;0.00412)			AGGCCGGATCACCCCCTTCGC	0.627000													5	20					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	11014987	11014987	+	RNA	SNP	A	A	G			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr21:11014987A>G	uc002yis.1	-	6		c.1459T>C						P56180	TPTE_HUMAN	Homo sapiens transmembrane phosphatase with tensin homology (TPTE), transcript variant 2, mRNA.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			NS(1)|breast(1)|central_nervous_system(2)|cervix(2)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(19)|lung(76)|ovary(2)|prostate(2)|skin(8)|urinary_tract(1)	130			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CTATAGTTTCAATAGCAGACT	0.388000													4	83					0	0	1	0	0
SLC22A24	283238	broad.mit.edu	37	11	62911079	62911079	+	Missense_Mutation	SNP	G	G	C	rs1939748	by1000genomes	TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr11:62911079G>C	uc021qkp.1	-	0	615	c.173C>G	c.(172-174)aCt>aGt	p.T58S		NM_001136506	NP_001129978			Homo sapiens solute carrier family 22, member 24 (SLC22A24), mRNA.											kidney(1)|stomach(1)	2						GTCAGACACAGTGTCATTGTC	0.517000													3	71					0	0	1	0	0
ZNF808	388558	broad.mit.edu	37	19	53057180	53057180	+	Silent	SNP	T	T	C			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr19:53057180T>C	uc010epq.1	+	4	1188	c.1011T>C	c.(1009-1011)caT>caC	p.H337H	ZNF808_uc002pzq.2_Non-coding_Transcript|ZNF808_uc010epr.2_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	Homo sapiens zinc finger protein 808 (ZNF808), mRNA.	337					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(8)|kidney(3)|lung(12)|urinary_tract(1)	24				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		AGGCAATTCATACTGGAGAGA	0.393000													4	105					0	0	1	0	0
TM7SF2	7108	broad.mit.edu	37	11	64883476	64883476	+	Missense_Mutation	SNP	A	A	G			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr11:64883476A>G	uc001ocv.3	+	7	1868	c.1271A>G	c.(1270-1272)cAg>cGg	p.Q424R	TM7SF2_uc001oct.3_Missense_Mutation_p.Q403R|TM7SF2_uc010rny.2_Missense_Mutation_p.Q287R|TM7SF2_uc001ocu.3_Missense_Mutation_p.Q376R|BC104003_uc009yqb.1_5'Flank	NM_003273	NP_003264	O76062	ERG24_HUMAN	Homo sapiens transmembrane 7 superfamily member 2 (TM7SF2), mRNA.	403					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane	delta14-sterol reductase activity			lung(14)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	18						CTGGCCTGGCAGGAGTACTGC	0.642000													6	18					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	144615250	144615251	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr1:144615250_144615251insAA	uc009wig.1	+	2	310_311	c.116_117insAA	c.(115-117)agafs	p.R39fs	NBPF10_uc010oxo.1_Intron|NBPF10_uc010oxn.1_Intron|NBPF10_uc021oth.1_Intron|NBPF10_uc021otj.1_Intron|NBPF10_uc021oto.1_Intron|NBPF10_uc021otr.1_Intron|NBPF10_uc021ots.1_Intron|NBPF10_uc021otv.1_Intron|NBPF10_uc001ekk.1_Intron|NBPF10_uc010oyd.1_Intron|NBPF10_uc010oye.2_5'UTR|NBPF10_uc001eli.3_Non-coding_Transcript|NBPF10_uc009wii.1_5'UTR|NBPF10_uc009wif.1_Non-coding_Transcript|PFN1P2_uc001elf.4_5'Flank	NM_001037675	NP_001032764	A6NDV3	A6NDV3_HUMAN	Homo sapiens neuroblastoma breakpoint family, member 9 (NBPF9), mRNA.	39										NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ACCTCAAAGAGATGTTTTCTAA	0.460													3	5	---	---	---	---					
PIK3R4	30849	broad.mit.edu	37	3	130425829	130425831	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr3:130425829_130425831delGAG	uc003enj.3	-	10	3263_3265	c.2682_2684delCTC	c.(2680-2685)tcctct>tct	p.894_895SS>S		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	Homo sapiens phosphoinositide-3-kinase, regulatory subunit 4 (PIK3R4), mRNA.	894					fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			NS(1)|breast(3)|central_nervous_system(1)|endometrium(6)|kidney(6)|large_intestine(16)|lung(28)|ovary(6)|pancreas(1)|prostate(2)|skin(5)|stomach(1)|urinary_tract(1)	77						AATGCCAGCAGAGGACTCGGAAC	0.502													12	103	---	---	---	---					
COPS4	51138	broad.mit.edu	37	4	83996480	83996480	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr4:83996480delA	uc003hoa.3	+	9	1257	c.1118delA	c.(1117-1119)cagfs	p.Q373fs	COPS4_uc010ijx.3_Frame_Shift_Del_p.R345fs	NM_016129	NP_057213	Q9BT78	CSN4_HUMAN	Homo sapiens COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) (COPS4), mRNA.	373					cullin deneddylation	cytoplasm|signalosome	protein binding			endometrium(2)|kidney(2)|large_intestine(3)|lung(4)|urinary_tract(2)	13		Hepatocellular(203;0.114)				TGGGATAAGCAGATCCAATCA	0.403													15	56	---	---	---	---					
TNRC18	84629	broad.mit.edu	37	7	5352666	5352668	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr7:5352666_5352668delGAG	uc003soi.4	-	26	8203_8205	c.7854_7856delCTC	c.(7852-7857)tcctca>tca	p.2618_2619SS>S		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	Homo sapiens trinucleotide repeat containing 18 (TNRC18), mRNA.	2618	Ser-rich.						DNA binding			central_nervous_system(1)|endometrium(1)|large_intestine(1)|lung(8)	11		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		ggaggaggatgaggaggaggagg	0.660													2	4	---	---	---	---					
MCAM	4162	broad.mit.edu	37	11	119187759	119187761	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr11:119187759_119187761delCAG	uc001pwf.3	-	0	80_82	c.51_53delCTG	c.(49-54)tgctgt>tgt	p.17_18CC>C		NM_006500	NP_006491	P43121	MUC18_HUMAN	Homo sapiens melanoma cell adhesion molecule (MCAM), mRNA.	17					anatomical structure morphogenesis|cell adhesion	integral to membrane|plasma membrane				breast(2)|central_nervous_system(2)|endometrium(2)|large_intestine(4)|lung(6)|ovary(2)|prostate(3)|skin(1)	22		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.78e-05)		GACGCGAGGACAGCAGCAGCAGG	0.744													2	4	---	---	---	---					
BPTF	2186	broad.mit.edu	37	17	65905759	65905759	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	g.chr17:65905759delA	uc002jgf.3	+	9	2935	c.2874delA	c.(2872-2874)ccafs	p.P958fs	BPTF_uc002jge.3_Frame_Shift_Del_p.P1084fs	NM_182641	NP_872579	Q12830	BPTF_HUMAN	Homo sapiens bromodomain PHD finger transcription factor (BPTF), transcript variant 1, mRNA.	1084					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex|cytoplasm	sequence-specific DNA binding|transcription factor binding|zinc ion binding			NS(1)|breast(1)|central_nervous_system(3)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(16)|lung(23)|ovary(3)|pancreas(2)|prostate(4)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(2)	78	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			CACGAAGTCCAAAAAAAATAA	0.308													8	236	---	---	---	---					
