Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	6417314	6417314	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	6484277	6484277	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	6569959	6569959	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7138735	7138735	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7176392	7176392	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7208726	7208729	+	Intron	DEL	TGTT	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	8975980	8975980	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	8990976	8990976	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	9002792	9002792	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9222545	9222545	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AAA1	404744	broad.mit.edu	37	7	34446076	34446076	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AAA1	404744	broad.mit.edu	37	7	34530445	34530447	+	Intron	DEL	AAT	-	-	rs10564848		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARS2	57505	broad.mit.edu	37	6	44270607	44270607	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARSD1	80755	broad.mit.edu	37	17	41107743	41107743	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASDHPPT	60496	broad.mit.edu	37	11	105962339	105962339	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215819926	215819926	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48285074	48285074	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48288997	48288997	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48311973	48311973	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48352833	48352833	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48545803	48545803	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48596924	48596925	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107594092	107594092	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94502167	94502167	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94521033	94521033	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94553395	94553395	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67247941	67247941	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67080687	67080687	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67081858	67081858	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67098978	67098978	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67130984	67130984	+	Intron	SNP	C	A	A	rs71357714		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66878643	66878643	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66883268	66883268	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66902052	66902052	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67004494	67004494	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67022356	67022356	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB10	23456	broad.mit.edu	37	1	229676403	229676403	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169791965	169791965	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169826478	169826478	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87144768	87144768	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87146093	87146093	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87148758	87148758	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87150937	87150937	+	Intron	SNP	G	T	T	rs17131983	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87170520	87170520	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87170602	87170602	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87069063	87069063	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87074148	87074148	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87076410	87076410	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87104814	87104814	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20691042	20691042	+	Splice_Site	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20706408	20706408	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB6	10058	broad.mit.edu	37	2	220077171	220077171	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB8	11194	broad.mit.edu	37	7	150737525	150737525	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB8	11194	broad.mit.edu	37	7	150741097	150741097	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB9	23457	broad.mit.edu	37	12	123414455	123414455	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48201679	48201679	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48212534	48212534	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48117462	48117462	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48138318	48138318	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101590300	101590300	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48734622	48734622	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48753029	48753029	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC4	10257	broad.mit.edu	37	13	95723836	95723836	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC4	10257	broad.mit.edu	37	13	95830321	95830321	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17419841	17419841	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	21957992	21957992	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	21965128	21965128	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD4	5826	broad.mit.edu	37	14	74760070	74760070	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF1	23	broad.mit.edu	37	6	30553991	30553991	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF2	10061	broad.mit.edu	37	7	150912582	150912582	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF2	10061	broad.mit.edu	37	7	150920972	150920972	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF2	10061	broad.mit.edu	37	7	150921000	150921000	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF3	55324	broad.mit.edu	37	3	183911183	183911183	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD12B	145447	broad.mit.edu	37	14	51355443	51355443	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD5	51099	broad.mit.edu	37	3	43744131	43744131	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100527187	100527187	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100530061	100530061	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100554509	100554509	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100569622	100569622	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100630786	100630786	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL1	25	broad.mit.edu	37	9	133738224	133738224	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179081426	179081426	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM1	3983	broad.mit.edu	37	10	116203838	116203838	+	Missense_Mutation	SNP	C	A	A	rs143955890	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADL	33	broad.mit.edu	37	2	211057678	211057678	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADM	34	broad.mit.edu	37	1	76208926	76208926	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADM	34	broad.mit.edu	37	1	76210390	76210390	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89386934	89386934	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89401263	89401263	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP2	23527	broad.mit.edu	37	3	195027169	195027169	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP2	23527	broad.mit.edu	37	3	195029512	195029512	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD4	79777	broad.mit.edu	37	17	43214816	43214816	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD7	414149	broad.mit.edu	37	10	15060056	15060056	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD7	414149	broad.mit.edu	37	10	15082105	15082105	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31351763	31351763	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31352338	31352338	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31421189	31421189	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31565680	31565680	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31585619	31585619	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31618338	31618338	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31618817	31618817	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31652781	31652781	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31705454	31705454	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31827363	31827363	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31881791	31881791	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32102602	32102602	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32102721	32102721	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCSL	390110	broad.mit.edu	37	11	44074273	44074273	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACD	65057	broad.mit.edu	37	16	67692248	67692248	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER2	340485	broad.mit.edu	37	9	19424711	19424711	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT11	26027	broad.mit.edu	37	1	55072770	55072770	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT11	26027	broad.mit.edu	37	1	55081929	55081929	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80639814	80639814	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX3	8310	broad.mit.edu	37	4	8372793	8372793	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSBG2	81616	broad.mit.edu	37	19	6187495	6187495	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSF3	197322	broad.mit.edu	37	16	89212441	89212441	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL5	51703	broad.mit.edu	37	10	114176519	114176519	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20559516	20559516	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM4	341392	broad.mit.edu	37	12	7476108	7476108	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20422935	20422935	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS2	55902	broad.mit.edu	37	20	33464093	33464093	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS2	55902	broad.mit.edu	37	20	33513944	33513944	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA1	58	broad.mit.edu	37	1	229567625	229567625	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTC1	70	broad.mit.edu	37	15	35082644	35082644	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN1	87	broad.mit.edu	37	14	69376405	69376405	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236894539	236894539	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236922967	236922967	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN3	89	broad.mit.edu	37	11	66321682	66321682	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN3	89	broad.mit.edu	37	11	66326838	66326838	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT1	139741	broad.mit.edu	37	X	127186093	127186093	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1C	130399	broad.mit.edu	37	2	158406903	158406903	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1C	130399	broad.mit.edu	37	2	158412629	158412629	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1	90	broad.mit.edu	37	2	158595116	158595116	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACY3	91703	broad.mit.edu	37	11	67410235	67410235	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39508586	39508586	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156851969	156851969	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156889933	156889933	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156917449	156917449	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87737491	87737491	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39602147	39602147	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM30	11085	broad.mit.edu	37	1	120437196	120437197	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM30	11085	broad.mit.edu	37	1	120437565	120437565	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM30	11085	broad.mit.edu	37	1	120438854	120438854	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM32	203102	broad.mit.edu	37	8	39016089	39016089	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM3A	1587	broad.mit.edu	37	8	39327504	39327504	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106109868	106109868	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106111174	106111174	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106236928	106236928	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106237790	106237790	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106444691	106444691	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106444865	106444865	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106579346	106579346	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106610262	106610262	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106721410	106721410	+	RNA	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106721564	106721564	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106733774	106733774	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106743821	106743821	+	Intron	SNP	G	A	A	rs145879126	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106757832	106757832	+	RNA	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106774282	106774282	+	RNA	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106800353	106800353	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106805594	106805594	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106849015	106849015	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106852914	106852914	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106859310	106859310	+	Intron	SNP	T	C	C	rs79463788		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106926522	106926522	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106962926	106962926	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106963112	106963112	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106974613	106974613	+	RNA	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106993960	106993960	+	RNA	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107062123	107062123	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107095469	107095469	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS10	81794	broad.mit.edu	37	19	8654053	8654053	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS10	81794	broad.mit.edu	37	19	8668562	8668562	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33614247	33614247	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33648771	33648771	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33665990	33665990	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33672271	33672271	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33689517	33689518	+	Intron	INS	-	A	A	rs113093925		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33815899	33815899	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136298373	136298373	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS15	170689	broad.mit.edu	37	11	130319699	130319699	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS15	170689	broad.mit.edu	37	11	130341207	130341208	+	Missense_Mutation	DNP	CG	TT	TT	rs139750111	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5186188	5186188	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5239336	5239336	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100537704	100537704	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100673391	100673391	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100871001	100871001	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77356277	77356277	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128920765	128920765	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	129001264	129001264	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	129030496	129030496	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43769737	43769737	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43826341	43826341	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43856708	43856708	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43862300	43862300	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43884264	43884264	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178541398	178541398	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178554939	178554939	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178585742	178585742	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28296937	28296937	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64644259	64644259	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64672312	64672312	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18474374	18474375	+	Intron	DEL	TG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18657596	18657596	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18706942	18706942	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18776831	18776831	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84359097	84359097	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84373112	84373112	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84408942	84408942	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84657463	84657463	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84660025	84660025	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84676632	84676632	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB1	104	broad.mit.edu	37	21	46591511	46591511	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1622346	1622346	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1667989	1667989	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADA	100	broad.mit.edu	37	20	43255112	43255112	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK2	90956	broad.mit.edu	37	7	140379229	140379229	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167803366	167803366	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167815160	167815160	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167825445	167825445	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167829163	167829163	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7698554	7698554	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7727311	7727311	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7804840	7804840	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY3	109	broad.mit.edu	37	2	25045374	25045374	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24791135	24791135	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24791486	24791486	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24794888	24794888	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24798698	24798698	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49166296	49166296	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50324504	50324504	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131902040	131902040	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131909166	131909166	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31132262	31132262	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111880292	111880292	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100205397	100205397	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100207910	100207910	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100242642	100242642	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1C	126	broad.mit.edu	37	4	100260803	100260803	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH4	127	broad.mit.edu	37	4	100063887	100063887	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH6	130	broad.mit.edu	37	4	100129911	100129911	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADHFE1	137872	broad.mit.edu	37	8	67356585	67356585	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADK	132	broad.mit.edu	37	10	76104249	76104249	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADK	132	broad.mit.edu	37	10	76187486	76187487	+	Intron	DEL	TG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADNP	23394	broad.mit.edu	37	20	49510781	49510781	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADORA3	140	broad.mit.edu	37	1	112028472	112028472	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPRHL2	54936	broad.mit.edu	37	1	36558942	36558942	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPRH	141	broad.mit.edu	37	3	119306347	119306347	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPRH	141	broad.mit.edu	37	3	119306361	119306361	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA2C	152	broad.mit.edu	37	4	3768794	3768794	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRBK2	157	broad.mit.edu	37	22	26074939	26074939	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AEBP1	165	broad.mit.edu	37	7	44153188	44153188	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L1	134265	broad.mit.edu	37	5	148679973	148679973	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147919381	147919381	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100444957	100444957	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74361153	74361153	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFP	174	broad.mit.edu	37	4	74309266	74309266	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFP	174	broad.mit.edu	37	4	74315230	74315230	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236659003	236659003	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP2	116986	broad.mit.edu	37	12	58126860	58126860	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86697684	86697684	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86725559	86725559	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86807601	86807601	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86823292	86823292	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87097715	87097715	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87135801	87135801	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87182480	87182480	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87235392	87235392	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87437826	87437826	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87572167	87572167	+	3'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL2	79841	broad.mit.edu	37	11	47681650	47681650	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL2	79841	broad.mit.edu	37	11	47698822	47698822	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49290406	49290406	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49442413	49442413	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49464574	49464574	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49575806	49575806	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49947089	49947089	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100382214	100382214	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT4	56895	broad.mit.edu	37	6	161557463	161557463	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT9	84803	broad.mit.edu	37	4	84457904	84457904	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPHD1	123688	broad.mit.edu	37	15	78825798	78825798	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTR1	185	broad.mit.edu	37	3	148458772	148458772	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTR1	185	broad.mit.edu	37	3	148459428	148459428	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109684040	109684040	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2	64902	broad.mit.edu	37	5	35013906	35013906	+	Intron	DEL	G	-	-	rs79432192		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247025437	247025437	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247048798	247048798	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105412494	105412494	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105414042	105414042	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62289878	62289878	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHRR	57491	broad.mit.edu	37	5	424176	424176	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHRR	57491	broad.mit.edu	37	5	434498	434498	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHR	196	broad.mit.edu	37	7	17379180	17379180	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSP	51327	broad.mit.edu	37	16	31539908	31539908	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIDA	64853	broad.mit.edu	37	1	222867507	222867507	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIG1	51390	broad.mit.edu	37	6	143486448	143486448	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIG1	51390	broad.mit.edu	37	6	143654272	143654272	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1L	55057	broad.mit.edu	37	1	26665911	26665911	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1L	55057	broad.mit.edu	37	1	26672495	26672495	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4832306	4832306	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77784044	77784044	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77873469	77873469	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77914115	77914116	+	Intron	DNP	GG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86050257	86050260	+	Intron	DEL	TGGG	-	-	rs71813519		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP3	10566	broad.mit.edu	37	12	4735925	4735925	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP3	10566	broad.mit.edu	37	12	4737038	4737038	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP4	8852	broad.mit.edu	37	X	49961636	49961636	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	32834587	32834588	+	Intron	INS	-	AC	AC	rs140800805	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91645288	91645288	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91647754	91647757	+	Intron	DEL	ACAG	-	-	rs66773601	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKD1	221264	broad.mit.edu	37	6	109819103	109819103	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKD1	221264	broad.mit.edu	37	6	109954560	109954560	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNA	80709	broad.mit.edu	37	9	117129925	117129925	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B1	231	broad.mit.edu	37	7	134131868	134131868	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1E2	83592	broad.mit.edu	37	10	4932286	4932286	+	Intron	SNP	T	C	C	rs71499610		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR7L	246181	broad.mit.edu	37	1	19597088	19597088	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALAS2	212	broad.mit.edu	37	X	55041505	55041505	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74280832	74280832	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105188012	105188012	+	Intron	DEL	G	-	-	rs78637040		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH16A1	126133	broad.mit.edu	37	19	49967889	49967889	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58302865	58302865	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125874333	125874333	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDOB	229	broad.mit.edu	37	9	104187073	104187073	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29445299	29445299	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29455249	29455249	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29551311	29551311	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29867888	29867888	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	30072494	30072494	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73678173	73678173	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73717143	73717143	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX12B	242	broad.mit.edu	37	17	7979126	7979126	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX12P2	245	broad.mit.edu	37	17	6798388	6798390	+	Intron	DEL	TCT	-	-	rs139475307		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX12	239	broad.mit.edu	37	17	6913862	6913862	+	3'UTR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPI	248	broad.mit.edu	37	2	233321600	233321600	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113333030	113333030	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113362410	113362410	+	3'UTR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK3	57538	broad.mit.edu	37	15	85366383	85366383	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPP	250	broad.mit.edu	37	2	233244940	233244941	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CL	259173	broad.mit.edu	37	3	46725216	46725216	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMAC1L2	83650	broad.mit.edu	37	8	11188962	11188962	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMAC1L2	83650	broad.mit.edu	37	8	11188988	11188988	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMBRA1	55626	broad.mit.edu	37	11	46534124	46534124	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMFR	267	broad.mit.edu	37	16	56417038	56417038	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMICA1	120425	broad.mit.edu	37	11	118076486	118076486	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38424287	38424287	+	3'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38485542	38485543	+	Intron	INS	-	CT	CT	rs143683786	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY1A	276	broad.mit.edu	37	1	104234063	104234063	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC1	64682	broad.mit.edu	37	2	112625739	112625739	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT1	284	broad.mit.edu	37	8	108367416	108367416	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPTL5	253935	broad.mit.edu	37	11	101762169	101762169	+	Missense_Mutation	SNP	G	T	T	rs139900371	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41513328	41513328	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41519214	41519214	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41591283	41591283	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41665477	41665477	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114266929	114266929	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114279001	114279001	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKDD1A	348094	broad.mit.edu	37	15	65212125	65212125	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139907771	139907771	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKIB1	54467	broad.mit.edu	37	7	91972513	91972513	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKK1	255239	broad.mit.edu	37	11	113270007	113270007	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241469379	241469381	+	Intron	DEL	GAG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRA2	57763	broad.mit.edu	37	5	72848696	72848696	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	74005688	74005688	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	74014779	74014779	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95649963	95649963	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95481179	95481179	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95488809	95488809	+	RNA	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95515029	95515029	+	RNA	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD26	22852	broad.mit.edu	37	10	27301833	27301833	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37414841	37414841	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37422768	37422768	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37423101	37423101	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37433998	37433998	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37451510	37451510	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37490217	37490217	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD32	84250	broad.mit.edu	37	5	94031053	94031053	+	3'UTR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36B	57730	broad.mit.edu	37	2	98177030	98177030	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD44	91526	broad.mit.edu	37	2	197990268	197990268	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD45	339416	broad.mit.edu	37	1	173628467	173628467	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD7	56311	broad.mit.edu	37	7	117874591	117874591	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	100169283	100169283	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	100200223	100200223	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99166695	99166695	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99194797	99194797	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS4B	257629	broad.mit.edu	37	16	21261872	21261872	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS6	203286	broad.mit.edu	37	9	101544820	101544820	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5685159	5685159	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5747267	5747267	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5801778	5801778	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26510767	26510767	+	Intron	DEL	C	-	-	rs76942738		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45663410	45663410	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45667478	45667479	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO7	50636	broad.mit.edu	37	2	242162555	242162555	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANUBL1	93550	broad.mit.edu	37	10	46159186	46159186	+	5'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA2P3	305	broad.mit.edu	37	10	66586387	66586387	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA8	653145	broad.mit.edu	37	10	47037056	47037056	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA8	653145	broad.mit.edu	37	10	47092609	47092609	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA8	653145	broad.mit.edu	37	10	47124583	47124584	+	Intron	DNP	GG	AA	AA	rs147420428	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36677629	36677629	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36698634	36698634	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36734496	36734496	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201534460	201534460	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1B1	162	broad.mit.edu	37	22	29727688	29727688	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1B1	162	broad.mit.edu	37	22	29735199	29735199	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2B1	163	broad.mit.edu	37	17	33977324	33977324	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2B1	163	broad.mit.edu	37	17	33997831	33997831	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3D1	8943	broad.mit.edu	37	19	2115419	2115419	+	Splice_Site	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3M2	10947	broad.mit.edu	37	8	42027723	42027723	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3S1	1176	broad.mit.edu	37	5	115205762	115205762	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3S1	1176	broad.mit.edu	37	5	115238581	115238581	+	Splice_Site	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4E1	23431	broad.mit.edu	37	15	51237100	51237100	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4E1	23431	broad.mit.edu	37	15	51240291	51240291	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA1	320	broad.mit.edu	37	9	72046047	72046047	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29368378	29368378	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26781334	26781334	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26848943	26848943	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1	322	broad.mit.edu	37	11	6432455	6432455	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLP2	334	broad.mit.edu	37	11	129996650	129996650	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOA4	337	broad.mit.edu	37	11	116691565	116691565	+	3'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB48R	55911	broad.mit.edu	37	16	28508886	28508886	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21226177	21226177	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC2	344	broad.mit.edu	37	19	45452237	45452237	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC3	345	broad.mit.edu	37	11	116703474	116703474	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOE	348	broad.mit.edu	37	19	45409792	45409792	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOE	348	broad.mit.edu	37	19	45412583	45412583	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APPBP2	10513	broad.mit.edu	37	17	58529351	58529351	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APP	351	broad.mit.edu	37	21	27254076	27254076	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APP	351	broad.mit.edu	37	21	27425354	27425354	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP6	363	broad.mit.edu	37	12	50367074	50367074	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7P1	375719	broad.mit.edu	37	9	67273587	67273587	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7P1	375719	broad.mit.edu	37	9	67281744	67281744	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7P1	375719	broad.mit.edu	37	9	67285320	67285320	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7P1	375719	broad.mit.edu	37	9	67287998	67287998	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33385507	33385507	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33395300	33395300	+	Intron	DEL	C	-	-	rs77570582		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115327725	115327725	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115346608	115346608	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115350326	115350326	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP1	116985	broad.mit.edu	37	11	72398509	72398509	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP1	116985	broad.mit.edu	37	11	72418409	72418409	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	35978531	35978531	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36150175	36150175	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36163086	36163086	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141044448	141044448	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68138279	68138279	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68226679	68226679	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP10	79658	broad.mit.edu	37	4	148823166	148823166	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144179629	144179629	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144329408	144329408	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144344513	144344513	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144344606	144344606	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144467603	144467603	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP20	57569	broad.mit.edu	37	11	110451883	110451883	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP20	57569	broad.mit.edu	37	11	110462454	110462454	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP20	57569	broad.mit.edu	37	11	110505892	110505892	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128932360	128932360	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128947484	128947484	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128994765	128994766	+	Missense_Mutation	DNP	TC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36269543	36269543	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36271419	36271419	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36276318	36276318	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36276429	36276429	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130217303	130217303	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11316437	11316437	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF12	23365	broad.mit.edu	37	11	120298878	120298878	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF15	22899	broad.mit.edu	37	17	8216578	8216578	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF19	128272	broad.mit.edu	37	1	16528824	16528843	+	Intron	DEL	CCATGGGGACGGGGTGCCCA	-	-	rs147970267	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF3	50650	broad.mit.edu	37	3	56788998	56788998	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27088771	27088771	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27105553	27105553	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3C	138715	broad.mit.edu	37	9	34627681	34627681	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4A	5926	broad.mit.edu	37	14	58817917	58817917	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARIH2	10425	broad.mit.edu	37	3	48965034	48965034	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARIH2	10425	broad.mit.edu	37	3	48998965	48998965	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC8	25852	broad.mit.edu	37	3	137989096	137989096	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX5	64860	broad.mit.edu	37	X	101858468	101858468	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35729177	35729177	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35748563	35748563	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35785526	35785527	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC4	91947	broad.mit.edu	37	15	98497441	98497442	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3002284	3002284	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSG	22901	broad.mit.edu	37	17	66303864	66303864	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSI	340075	broad.mit.edu	37	5	149677043	149677043	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARV1	64801	broad.mit.edu	37	1	231115007	231115007	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AS3MT	57412	broad.mit.edu	37	10	104638361	104638361	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP2	8853	broad.mit.edu	37	2	9437490	9437490	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP3	55616	broad.mit.edu	37	1	23759550	23759550	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB10	136371	broad.mit.edu	37	7	150883752	150883752	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB13	79754	broad.mit.edu	37	10	5690477	5690477	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB17	127247	broad.mit.edu	37	1	76384631	76384631	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB4	51666	broad.mit.edu	37	7	95143524	95143524	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101090599	101090599	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101215276	101215276	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155448223	155448223	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMTL	8623	broad.mit.edu	37	X	1554611	1554611	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1743181	1743181	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1746597	1746597	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASNS	440	broad.mit.edu	37	7	97481701	97481701	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62430001	62430001	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62559278	62559278	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62602342	62602342	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASS1	445	broad.mit.edu	37	9	133359187	133359187	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176833058	176833058	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176847250	176847250	+	Intron	SNP	G	T	T	rs151190335	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176853573	176853573	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176857284	176857284	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176863991	176863991	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176883691	176883691	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176900223	176900223	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176904352	176904353	+	Intron	DNP	GA	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176927331	176927331	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176977999	176977999	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176983956	176983957	+	Nonsense_Mutation	DNP	GC	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176992529	176992529	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177133590	177133590	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119526274	119526274	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119737595	119737595	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119748289	119748289	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119837791	119837791	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119879671	119879671	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119909770	119909770	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120063985	120063985	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120100667	120100667	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120115357	120115357	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31230326	31230326	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31305439	31305439	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31306801	31306801	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31306911	31306911	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASZ1	136991	broad.mit.edu	37	7	117024926	117024926	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96758240	96758240	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG5	9474	broad.mit.edu	37	6	106634247	106634247	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG9A	79065	broad.mit.edu	37	2	220085570	220085570	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG9B	285973	broad.mit.edu	37	7	150720433	150720433	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATIC	471	broad.mit.edu	37	2	216195134	216195134	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108098693	108098693	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATN1	1822	broad.mit.edu	37	12	7050065	7050065	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10A	57194	broad.mit.edu	37	15	25932590	25932590	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47537490	47537490	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47563059	47563059	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47574026	47574026	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113526215	113526215	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113527471	113527471	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11B	23200	broad.mit.edu	37	3	182602614	182602614	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A1	57130	broad.mit.edu	37	19	19756677	19756677	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A1	57130	broad.mit.edu	37	19	19770477	19770477	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A1	57130	broad.mit.edu	37	19	19770519	19770519	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A1	57130	broad.mit.edu	37	19	19770556	19770556	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A2	23400	broad.mit.edu	37	1	17331103	17331103	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193158420	193158420	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193210605	193210605	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A1	476	broad.mit.edu	37	1	116943370	116943370	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42489950	42489950	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160143215	160143215	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119504440	119504440	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A3	489	broad.mit.edu	37	17	3850917	3850917	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10428294	10428294	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10689069	10689069	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10689619	10689619	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B3	492	broad.mit.edu	37	X	152825187	152825187	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203690707	203690707	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203709150	203709151	+	3'UTR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36053977	36053977	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A1	535	broad.mit.edu	37	17	40673156	40673156	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A2	23545	broad.mit.edu	37	12	124209428	124209428	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A4	50617	broad.mit.edu	37	7	138453945	138453945	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A4	50617	broad.mit.edu	37	7	138456103	138456103	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0D2	245972	broad.mit.edu	37	8	87155213	87155213	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1B1	525	broad.mit.edu	37	2	71190182	71190182	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1C1	528	broad.mit.edu	37	8	104078760	104078760	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1C2	245973	broad.mit.edu	37	2	10911864	10911864	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7B	540	broad.mit.edu	37	13	52548913	52548913	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42580345	42580345	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26411085	26411085	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26417366	26417366	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26424474	26424474	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26477559	26477559	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B2	57198	broad.mit.edu	37	1	154321236	154321236	+	Intron	SNP	G	T	T	rs80098983	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50154462	50154462	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50399200	50399200	+	5'UTR	SNP	G	T	T	rs148895992	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50346334	50346334	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9B	374868	broad.mit.edu	37	18	76906392	76906392	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	116919961	116919961	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117309038	117309038	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN7L1	222255	broad.mit.edu	37	7	105447456	105447456	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AURKB	9212	broad.mit.edu	37	17	8110582	8110582	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	69840994	69840994	+	Intron	DEL	T	-	-	rs149649407		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	69871192	69871192	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70107689	70107689	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVP	551	broad.mit.edu	37	20	3065349	3065349	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AWAT1	158833	broad.mit.edu	37	X	69454624	69454624	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AWAT2	158835	broad.mit.edu	37	X	69264267	69264267	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXIN2	8313	broad.mit.edu	37	17	63545568	63545568	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALNT2	148789	broad.mit.edu	37	1	235611629	235611629	+	3'UTR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALT2	8707	broad.mit.edu	37	1	193150639	193150640	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALT5	10317	broad.mit.edu	37	21	41033394	41033394	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALTL	145173	broad.mit.edu	37	13	31843330	31843330	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT2	124872	broad.mit.edu	37	17	47236186	47236186	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT2	124872	broad.mit.edu	37	17	47237781	47237781	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT2	124872	broad.mit.edu	37	17	47247031	47247031	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT2	124872	broad.mit.edu	37	17	47247044	47247044	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT1	2683	broad.mit.edu	37	9	33135908	33135909	+	Intron	DEL	TA	-	-	rs34931533		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B9D1	27077	broad.mit.edu	37	17	19250477	19250477	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAAT	570	broad.mit.edu	37	9	104125270	104125270	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACH1	571	broad.mit.edu	37	21	30701774	30701774	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACH2	60468	broad.mit.edu	37	6	90661200	90661200	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACH2	60468	broad.mit.edu	37	6	90704634	90704634	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACH2	60468	broad.mit.edu	37	6	90778720	90778720	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAG1	573	broad.mit.edu	37	9	33257016	33257016	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11047607	11047607	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11050982	11050982	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11067160	11067160	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11067162	11067162	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11094575	11094575	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAHD1	22893	broad.mit.edu	37	15	40757559	40757559	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI1	575	broad.mit.edu	37	8	143561119	143561119	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69349325	69349325	+	Splice_Site	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69483649	69483649	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69511372	69511372	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69666448	69666448	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1394694	1394694	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANK1	55024	broad.mit.edu	37	4	102946314	102946314	+	Intron	SNP	G	A	A	rs114425058	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARHL2	343472	broad.mit.edu	37	1	91182574	91182574	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARHL2	343472	broad.mit.edu	37	1	91182817	91182817	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BASP1	10409	broad.mit.edu	37	5	17275491	17275491	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT1	7919	broad.mit.edu	37	6	31498927	31498927	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT1	7919	broad.mit.edu	37	6	31499075	31499075	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171501704	171501704	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31600616	31600616	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160239263	160239263	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBOX1	8424	broad.mit.edu	37	11	27114954	27114954	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS10	79738	broad.mit.edu	37	12	76740920	76740920	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAR1	9564	broad.mit.edu	37	16	75263684	75263684	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAR3	8412	broad.mit.edu	37	1	94107969	94107969	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAR3	8412	broad.mit.edu	37	1	94140198	94140199	+	Missense_Mutation	DNP	CC	AT	AT	rs112584760	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS1	8537	broad.mit.edu	37	20	52570011	52570011	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	58757070	58757070	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11B	64919	broad.mit.edu	37	14	99708627	99708627	+	Intron	SNP	C	A	A	rs76492138		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL8	606	broad.mit.edu	37	15	20874895	20874895	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL8	606	broad.mit.edu	37	15	20876598	20876598	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL8	606	broad.mit.edu	37	15	20935307	20935307	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL8	606	broad.mit.edu	37	15	20964411	20964411	+	5'Flank	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCOR	54880	broad.mit.edu	37	X	39932963	39932963	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCOR	54880	broad.mit.edu	37	X	39934292	39934293	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70785278	70785278	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70797398	70797398	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND5	79656	broad.mit.edu	37	1	49193631	49193631	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BGLAP	632	broad.mit.edu	37	1	156212028	156212028	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICD1	636	broad.mit.edu	37	12	32458750	32458750	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN2	51411	broad.mit.edu	37	12	51717924	51717924	+	5'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC5	332	broad.mit.edu	37	17	76210464	76210464	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32724733	32724733	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32836451	32836451	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLCAP	10904	broad.mit.edu	37	20	36147141	36147141	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLNK	29760	broad.mit.edu	37	10	97967483	97967483	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLVRA	644	broad.mit.edu	37	7	43830765	43830765	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP10	27302	broad.mit.edu	37	2	69092671	69092671	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP5	653	broad.mit.edu	37	6	55659147	55659147	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP5	653	broad.mit.edu	37	6	55739649	55739649	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP6	654	broad.mit.edu	37	6	7791716	7791716	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP7	655	broad.mit.edu	37	20	55748466	55748466	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34014328	34014328	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	96025611	96025611	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	96025725	96025725	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR2	659	broad.mit.edu	37	2	203329572	203329572	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43293750	43293750	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC1	646	broad.mit.edu	37	15	83931885	83931885	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16436590	16436590	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16451689	16451689	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16789457	16789457	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112999848	112999848	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOLL	66037	broad.mit.edu	37	2	198636675	198636675	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL1	80341	broad.mit.edu	37	20	31608083	31608084	+	Intron	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL3	128859	broad.mit.edu	37	20	31624177	31624177	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL3	128859	broad.mit.edu	37	20	31627895	31627895	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36954950	36954950	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD4	23476	broad.mit.edu	37	19	15383965	15383965	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRE	9577	broad.mit.edu	37	2	28352283	28352283	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRE	9577	broad.mit.edu	37	2	28467721	28467721	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRF2	55290	broad.mit.edu	37	8	37704706	37704707	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRMS1L	84312	broad.mit.edu	37	14	36334993	36334993	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSND	7809	broad.mit.edu	37	1	55472900	55472900	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49689788	49689788	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93711234	93711234	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107713182	107713182	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107886968	107886968	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108004204	108004204	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108011113	108011113	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD16	118663	broad.mit.edu	37	10	124036380	124036380	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD16	118663	broad.mit.edu	37	10	124066899	124066899	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD9	114781	broad.mit.edu	37	6	38255915	38255915	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTG4	54766	broad.mit.edu	37	11	111368797	111368797	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A1	11119	broad.mit.edu	37	6	26411915	26411915	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A3	10384	broad.mit.edu	37	6	26444084	26444084	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL3	10917	broad.mit.edu	37	5	180430646	180430646	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTRC	8945	broad.mit.edu	37	10	103294633	103294633	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUB1B	701	broad.mit.edu	37	15	40512981	40512981	+	3'UTR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZW2	28969	broad.mit.edu	37	7	16705174	16705174	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZW2	28969	broad.mit.edu	37	7	16721015	16721015	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf129	142827	broad.mit.edu	37	10	96955475	96955475	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf137	26098	broad.mit.edu	37	10	127408457	127408457	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf137	26098	broad.mit.edu	37	10	127438099	127438099	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf18	54906	broad.mit.edu	37	10	5788150	5788150	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf27	219793	broad.mit.edu	37	10	72531449	72531449	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf71	118461	broad.mit.edu	37	10	50531556	50531556	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf81	79949	broad.mit.edu	37	10	115526456	115526456	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf90	118611	broad.mit.edu	37	10	128114359	128114359	+	3'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf90	118611	broad.mit.edu	37	10	128326955	128326955	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf96	374355	broad.mit.edu	37	10	118100281	118100281	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33583363	33583363	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33596337	33596337	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf53	341032	broad.mit.edu	37	11	111154754	111154754	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf70	85016	broad.mit.edu	37	11	101953855	101953855	+	Silent	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf80	79703	broad.mit.edu	37	11	66555568	66555568	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf26	84190	broad.mit.edu	37	12	82824651	82824651	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40040149	40040149	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40066087	40066087	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf42	374470	broad.mit.edu	37	12	103699929	103699929	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf50	160419	broad.mit.edu	37	12	88390524	88390524	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97112455	97112455	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf18	80183	broad.mit.edu	37	13	46942721	46942721	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf26	122046	broad.mit.edu	37	13	31513948	31513948	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf33	84935	broad.mit.edu	37	13	31498618	31498618	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf148	122945	broad.mit.edu	37	14	77888906	77888906	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf149	112849	broad.mit.edu	37	14	59939672	59939672	+	3'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf166	51637	broad.mit.edu	37	14	52458077	52458077	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf177	283598	broad.mit.edu	37	14	99175155	99175158	+	5'Flank	DEL	CTTC	-	-	rs34060029		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf182	283551	broad.mit.edu	37	14	50459177	50459177	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf43	91748	broad.mit.edu	37	14	74204052	74204052	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf45	80127	broad.mit.edu	37	14	74523820	74523820	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95909453	95909453	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf64	388011	broad.mit.edu	37	14	98442576	98442576	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf64	388011	broad.mit.edu	37	14	98443576	98443576	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf64	388011	broad.mit.edu	37	14	98445929	98445929	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf73	91828	broad.mit.edu	37	14	103574772	103574772	+	Missense_Mutation	SNP	G	T	T	rs142666277	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf26	161502	broad.mit.edu	37	15	81440257	81440257	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921603	24921603	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf33	196951	broad.mit.edu	37	15	49650396	49650396	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf44	81556	broad.mit.edu	37	15	65899626	65899626	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100341798	100341798	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf52	388115	broad.mit.edu	37	15	40630806	40630806	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34640339	34640339	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf59	388135	broad.mit.edu	37	15	74032670	74032670	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf59	388135	broad.mit.edu	37	15	74043310	74043310	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf60	283677	broad.mit.edu	37	15	73766187	73766187	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf79	283870	broad.mit.edu	37	16	2259431	2259431	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf28	283987	broad.mit.edu	37	17	72954413	72954413	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf39	79018	broad.mit.edu	37	17	17965141	17965141	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf47	284083	broad.mit.edu	37	17	56620460	56620460	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf66	256957	broad.mit.edu	37	17	34185940	34185940	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf66	256957	broad.mit.edu	37	17	34191159	34191159	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf74	201243	broad.mit.edu	37	17	7330130	7330130	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf80	55028	broad.mit.edu	37	17	71238241	71238241	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf2	56651	broad.mit.edu	37	18	1302360	1302360	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf45	85019	broad.mit.edu	37	18	20896907	20896907	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30441308	30441308	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30447653	30447653	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf52	90580	broad.mit.edu	37	19	11040235	11040235	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf59	199675	broad.mit.edu	37	19	7743311	7743311	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf69	100170765	broad.mit.edu	37	19	41950079	41950079	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QB	713	broad.mit.edu	37	1	22986051	22986051	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QC	714	broad.mit.edu	37	1	22970634	22970634	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF7	114905	broad.mit.edu	37	4	15444437	15444437	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF9B	387911	broad.mit.edu	37	13	24468217	24468217	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF9	338872	broad.mit.edu	37	13	24895697	24895697	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf103	55791	broad.mit.edu	37	1	111494009	111494009	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf106	55765	broad.mit.edu	37	1	200882535	200882535	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf107	27042	broad.mit.edu	37	1	210003483	210003483	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf114	57821	broad.mit.edu	37	1	169383666	169383666	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179503848	179503848	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170981919	170981919	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf144	26099	broad.mit.edu	37	1	16721475	16721475	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf150	148823	broad.mit.edu	37	1	247719776	247719776	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf150	148823	broad.mit.edu	37	1	247737828	247737828	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12806518	12806518	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12819346	12819346	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12819516	12819516	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57185863	57185863	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57254435	57254435	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75044403	75044403	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55118378	55118378	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55161094	55161094	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf180	439927	broad.mit.edu	37	1	85097365	85097365	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf185	284546	broad.mit.edu	37	1	51572785	51572785	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf26	54823	broad.mit.edu	37	1	185171771	185171771	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf52	148423	broad.mit.edu	37	1	85725170	85725170	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf57	84284	broad.mit.edu	37	1	233086347	233086347	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf64	149563	broad.mit.edu	37	1	16332318	16332318	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34672498	34672498	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf9	51430	broad.mit.edu	37	1	172501625	172501625	+	5'Flank	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31879819	31879819	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31879849	31879849	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31887530	31887530	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31891579	31891579	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf117	140710	broad.mit.edu	37	20	35437112	35437112	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf132	140699	broad.mit.edu	37	20	35788620	35788621	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf152	140894	broad.mit.edu	37	20	34572863	34572863	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31643444	31643444	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf186	149954	broad.mit.edu	37	20	31680473	31680473	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf186	149954	broad.mit.edu	37	20	31685514	31685514	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf194	25943	broad.mit.edu	37	20	3305421	3305421	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf200	253868	broad.mit.edu	37	20	61143800	61143800	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf24	55969	broad.mit.edu	37	20	35238010	35238010	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf54	113278	broad.mit.edu	37	20	746024	746024	+	Missense_Mutation	SNP	C	T	T	rs142157418		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf70	140683	broad.mit.edu	37	20	31763078	31763078	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf96	140680	broad.mit.edu	37	20	270053	270053	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf34	388815	broad.mit.edu	37	21	17592947	17592947	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf81	391267	broad.mit.edu	37	21	15317468	15317468	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf99	149992	broad.mit.edu	37	21	14414913	14414913	+	RNA	SNP	C	A	A	rs2821610	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf99	149992	broad.mit.edu	37	21	14424213	14424213	+	RNA	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf33	339669	broad.mit.edu	37	22	37387169	37387169	+	3'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf18	54978	broad.mit.edu	37	2	27001345	27001345	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf51	200523	broad.mit.edu	37	2	88828648	88828648	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf51	200523	broad.mit.edu	37	2	88828921	88828921	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf56	55471	broad.mit.edu	37	2	37458822	37458822	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf61	285051	broad.mit.edu	37	2	47382496	47382496	+	5'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf62	375307	broad.mit.edu	37	2	219221640	219221640	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf62	375307	broad.mit.edu	37	2	219222789	219222789	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf62	375307	broad.mit.edu	37	2	219232596	219232596	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf70	339778	broad.mit.edu	37	2	26800283	26800283	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf83	56918	broad.mit.edu	37	2	228475984	228475984	+	3'UTR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf85	285093	broad.mit.edu	37	2	242815135	242815135	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3P1	388503	broad.mit.edu	37	19	10169093	10169093	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf16	389161	broad.mit.edu	37	3	149482081	149482081	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf17	25871	broad.mit.edu	37	3	112736109	112736109	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf20	84077	broad.mit.edu	37	3	14746196	14746196	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf21	152002	broad.mit.edu	37	3	194833606	194833607	+	Intron	DEL	AT	-	-	rs145315677		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf21	152002	broad.mit.edu	37	3	194840394	194840396	+	Intron	DEL	GAG	-	-	rs147025961		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf30	152405	broad.mit.edu	37	3	118870228	118870228	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf66	677779	broad.mit.edu	37	3	108896906	108896906	+	5'Flank	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPA	722	broad.mit.edu	37	1	207289901	207289902	+	Intron	INS	-	TATGTATA	TATGTATA	rs60509489		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81307588	81307588	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81308393	81308393	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81780681	81780681	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf23	152992	broad.mit.edu	37	4	8472625	8472625	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf37	285555	broad.mit.edu	37	4	98720423	98720423	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf37	285555	broad.mit.edu	37	4	99055654	99055654	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf40	401137	broad.mit.edu	37	4	71023590	71023590	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf40	401137	broad.mit.edu	37	4	71024621	71024621	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf45	152940	broad.mit.edu	37	4	159836423	159836423	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf13	9315	broad.mit.edu	37	5	111312052	111312052	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf25	375484	broad.mit.edu	37	5	175717056	175717056	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37210301	37210301	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf51	285636	broad.mit.edu	37	5	41904451	41904451	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41203063	41203063	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf105	84830	broad.mit.edu	37	6	11759245	11759245	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf105	84830	broad.mit.edu	37	6	11779697	11779697	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47846647	47846647	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47976478	47976478	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47989349	47989349	+	Intron	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	53974388	53974388	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	53980876	53980876	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf162	57150	broad.mit.edu	37	6	88049910	88049910	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf165	154313	broad.mit.edu	37	6	88136356	88136356	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf168	84553	broad.mit.edu	37	6	99727531	99727531	+	3'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf168	84553	broad.mit.edu	37	6	99736994	99736994	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121530726	121530726	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121642648	121642648	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf191	253582	broad.mit.edu	37	6	130154670	130154670	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf191	253582	broad.mit.edu	37	6	130182488	130182488	+	5'Flank	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf204	387119	broad.mit.edu	37	6	118898050	118898052	+	Intron	DEL	CAT	-	-	rs57886944		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf204	387119	broad.mit.edu	37	6	118965648	118965648	+	Intron	DEL	C	-	-	rs34474283		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf217	100131814	broad.mit.edu	37	6	135941017	135941017	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf35	729515	broad.mit.edu	37	6	157721107	157721107	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf58	352999	broad.mit.edu	37	6	127898552	127898552	+	Nonsense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf81	221481	broad.mit.edu	37	6	35705695	35705695	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf97	80129	broad.mit.edu	37	6	151939225	151939225	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40868735	40868735	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf16	10842	broad.mit.edu	37	7	31734972	31734972	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf16	10842	broad.mit.edu	37	7	31736880	31736880	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf31	136895	broad.mit.edu	37	7	25219018	25219018	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf34	135927	broad.mit.edu	37	7	142637627	142637627	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf46	340277	broad.mit.edu	37	7	23724320	23724320	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120737676	120737676	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120797604	120797604	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120797635	120797635	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120841958	120841958	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120884572	120884572	+	Intron	SNP	C	A	A	rs139350642	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120887602	120887602	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120906837	120906837	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120935783	120935783	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89900878	89900878	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89939357	89939357	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf66	154907	broad.mit.edu	37	7	108524515	108524516	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57347195	57347195	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf42	157695	broad.mit.edu	37	8	442737	442737	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf74	203076	broad.mit.edu	37	8	10557834	10557834	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf11	54586	broad.mit.edu	37	9	27286203	27286203	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf144B	259308	broad.mit.edu	37	9	34729283	34729283	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf144	389715	broad.mit.edu	37	9	34837087	34837087	+	5'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf41	138199	broad.mit.edu	37	9	77598671	77598671	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49726546	49726546	+	Missense_Mutation	SNP	T	C	C	rs71713990		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	50145427	50145427	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA2	760	broad.mit.edu	37	8	86393054	86393055	+	3'UTR	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA5BP	340591	broad.mit.edu	37	X	15711239	15711239	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA9	768	broad.mit.edu	37	9	35680958	35680958	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAB39L	81617	broad.mit.edu	37	13	49913921	49913921	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24451651	24451651	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP1	9478	broad.mit.edu	37	12	121093820	121093820	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65124290	65124290	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13373748	13373748	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13419011	13419011	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13603864	13603864	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13606628	13606628	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140943792	140943792	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2332197	2332197	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2387058	2387058	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2482751	2482751	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2566635	2566635	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2656655	2656655	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2659199	2659199	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2675717	2675717	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2711898	2711898	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2721178	2721178	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2727481	2727481	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53707833	53707833	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53778922	53778922	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53809960	53809960	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181548540	181548540	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181548570	181548570	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181570137	181570137	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181649627	181649627	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181684348	181684348	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181685136	181685136	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181701863	181701863	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181702956	181702956	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181727059	181727059	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181732422	181732422	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181755039	181755039	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181767893	181767893	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49068471	49068471	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48703714	48703714	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1245994	1245994	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201021903	201021903	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201041853	201041853	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201061223	201061223	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81624234	81624234	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81997678	81997678	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54254728	54254728	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54616024	54616024	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54644686	54644686	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54715760	54715760	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	55038927	55038927	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	55043458	55043458	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1950072	1950072	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1963309	1963309	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1983750	1983750	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18569360	18569360	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18795324	18795324	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18807514	18807514	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG2	10369	broad.mit.edu	37	22	36976258	36976258	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG5	27091	broad.mit.edu	37	17	64880797	64880797	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	85030536	85030536	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	85703531	85703531	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	85740247	85740247	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86061750	86061750	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86063813	86063813	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159161833	159161833	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159163278	159163278	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62450149	62450149	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62485033	62485033	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62830056	62830056	+	Intron	SNP	T	C	C	rs114031366	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27446888	27446888	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27465161	27465161	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALB2	794	broad.mit.edu	37	16	71423612	71423612	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188211006	188211006	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188280235	188280235	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188280419	188280419	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93063363	93063363	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93090015	93090015	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALHM2	51063	broad.mit.edu	37	10	105209246	105209246	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALN1	83698	broad.mit.edu	37	7	71488712	71488712	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44294082	44294082	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2D	817	broad.mit.edu	37	4	114468842	114468842	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2D	817	broad.mit.edu	37	4	114682095	114682095	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110733684	110733684	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110819971	110819971	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKK2	10645	broad.mit.edu	37	12	121691374	121691374	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMSAP1L1	23271	broad.mit.edu	37	1	200816329	200816329	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAND2	23066	broad.mit.edu	37	3	12854739	12854739	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPG	822	broad.mit.edu	37	2	85628550	85628550	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN13	92291	broad.mit.edu	37	2	30955290	30955290	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN13	92291	broad.mit.edu	37	2	30980755	30980755	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN1	823	broad.mit.edu	37	11	64972339	64972339	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN2	824	broad.mit.edu	37	1	223943328	223943328	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110494645	110494645	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN8	388743	broad.mit.edu	37	1	223831909	223831909	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN9	10753	broad.mit.edu	37	1	230916350	230916350	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN9	10753	broad.mit.edu	37	1	230927500	230927500	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPNS2	84290	broad.mit.edu	37	16	55601073	55601073	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN2	65981	broad.mit.edu	37	12	30863016	30863016	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPS2	84698	broad.mit.edu	37	12	75784752	75784752	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPZA3	93661	broad.mit.edu	37	12	18891236	18891236	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2972090	2972090	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2976629	2976629	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD14	79092	broad.mit.edu	37	17	78156517	78156517	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARKD	55739	broad.mit.edu	37	13	111289371	111289371	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC1	55259	broad.mit.edu	37	12	25315929	25315929	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC5	57082	broad.mit.edu	37	15	40954257	40954258	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASKIN1	57524	broad.mit.edu	37	16	2237394	2237394	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASK	8573	broad.mit.edu	37	X	41604855	41604855	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104963856	104963856	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP2	835	broad.mit.edu	37	7	142991517	142991517	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP5	838	broad.mit.edu	37	11	104879789	104879789	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP7	840	broad.mit.edu	37	10	115485261	115485261	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP7	840	broad.mit.edu	37	10	115489003	115489003	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP8AP2	9994	broad.mit.edu	37	6	90577112	90577112	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55012178	55012178	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55027392	55027392	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASZ1	54897	broad.mit.edu	37	1	10720693	10720693	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER1	117144	broad.mit.edu	37	11	65793318	65793318	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER2P1	440278	broad.mit.edu	37	15	44028264	44028264	+	RNA	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER3	347732	broad.mit.edu	37	5	134332105	134332105	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92139240	92139240	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERG	57828	broad.mit.edu	37	19	38857880	38857880	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAV1	857	broad.mit.edu	37	7	116091080	116091080	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105422977	105422977	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105489450	105489450	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN4	140689	broad.mit.edu	37	20	54573438	54573438	+	3'UTR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBWD2	150472	broad.mit.edu	37	2	114202811	114202811	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1A	54862	broad.mit.edu	37	19	14034455	14034455	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL1	883	broad.mit.edu	37	9	131596097	131596097	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC102B	79839	broad.mit.edu	37	18	66564821	66564821	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC105	126402	broad.mit.edu	37	19	15131385	15131385	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219888941	219888941	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC113	29070	broad.mit.edu	37	16	58287845	58287845	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC11	220136	broad.mit.edu	37	18	47777800	47777800	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31614412	31614412	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92938261	92938261	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128455530	128455530	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC13	152206	broad.mit.edu	37	3	42784191	42784191	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179710512	179710512	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106139908	106139908	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC150	284992	broad.mit.edu	37	2	197504376	197504376	+	5'UTR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC150	284992	broad.mit.edu	37	2	197578192	197578192	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC151	115948	broad.mit.edu	37	19	11541569	11541569	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC158	339965	broad.mit.edu	37	4	77290615	77290615	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC163P	126661	broad.mit.edu	37	1	45962398	45962398	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC17	149483	broad.mit.edu	37	1	46086298	46086298	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC18	343099	broad.mit.edu	37	1	93646040	93646040	+	5'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC38	120935	broad.mit.edu	37	12	96282315	96282315	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180366116	180366116	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC40	55036	broad.mit.edu	37	17	78073265	78073265	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	63997027	63997027	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC54	84692	broad.mit.edu	37	3	107096340	107096340	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119893743	119893746	+	Intron	DEL	AGAG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119966691	119966691	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC64	92558	broad.mit.edu	37	12	120502555	120502555	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC66	285331	broad.mit.edu	37	3	56627994	56627994	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC67	159989	broad.mit.edu	37	11	93088627	93088627	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC76	54482	broad.mit.edu	37	1	100605185	100605185	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC79	283847	broad.mit.edu	37	16	66804219	66804219	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC7	221016	broad.mit.edu	37	10	32806872	32806872	+	Splice_Site	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC80	151887	broad.mit.edu	37	3	112328923	112328923	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85613891	85613891	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85623917	85623917	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC87	55231	broad.mit.edu	37	11	66358815	66358815	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC87	55231	broad.mit.edu	37	11	66359146	66359146	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55563918	55563918	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88C	440193	broad.mit.edu	37	14	91804492	91804492	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC90A	63933	broad.mit.edu	37	6	13792272	13792272	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC94	55702	broad.mit.edu	37	19	4251212	4251212	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC9	26093	broad.mit.edu	37	19	47761465	47761465	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL13	6357	broad.mit.edu	37	17	32683575	32683575	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL20	6364	broad.mit.edu	37	2	228681090	228681090	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL23	6368	broad.mit.edu	37	17	34344969	34344969	+	5'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL3	6348	broad.mit.edu	37	17	34416174	34416174	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL5	6352	broad.mit.edu	37	17	34207333	34207333	+	5'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCND2	894	broad.mit.edu	37	12	4387871	4387871	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNY	219771	broad.mit.edu	37	10	35842023	35842023	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR7	1236	broad.mit.edu	37	17	38721638	38721638	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6A	908	broad.mit.edu	37	7	56128690	56128690	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33281507	33281507	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74476802	74476802	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74512893	74512893	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74520922	74520922	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7531839	7531839	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7551765	7551765	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD177	57126	broad.mit.edu	37	19	43865899	43865899	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158224512	158224512	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158227028	158227028	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158298932	158298932	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158300659	158300659	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158300748	158300748	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1C	911	broad.mit.edu	37	1	158259571	158259571	+	5'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1L	344807	broad.mit.edu	37	3	112534583	112534583	+	3'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1L	344807	broad.mit.edu	37	3	112545933	112545933	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1	131450	broad.mit.edu	37	3	112644089	112644089	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD209	30835	broad.mit.edu	37	19	7809108	7809109	+	Intron	DNP	GG	CT	CT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67592967	67592967	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35832179	35832179	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD244	51744	broad.mit.edu	37	1	160801396	160801396	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD2	914	broad.mit.edu	37	1	117297470	117297470	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD2	914	broad.mit.edu	37	1	117311047	117311047	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300LB	124599	broad.mit.edu	37	17	72522097	72522097	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD33	945	broad.mit.edu	37	19	51728727	51728727	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80118075	80118075	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80165959	80165959	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80166532	80166532	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80193074	80193074	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80299343	80299343	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40	958	broad.mit.edu	37	20	44751503	44751503	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD48	962	broad.mit.edu	37	1	160650908	160650908	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD4	920	broad.mit.edu	37	12	6926530	6926530	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157804351	157804351	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD6	923	broad.mit.edu	37	11	60783032	60783032	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD70	970	broad.mit.edu	37	19	6591093	6591093	+	5'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD79B	974	broad.mit.edu	37	17	62007104	62007104	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD80	941	broad.mit.edu	37	3	119255889	119255889	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD83	9308	broad.mit.edu	37	6	14134055	14134055	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD86	942	broad.mit.edu	37	3	121805446	121805446	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD86	942	broad.mit.edu	37	3	121822855	121822855	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD86	942	broad.mit.edu	37	3	121836852	121836852	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD8A	925	broad.mit.edu	37	2	87013028	87013028	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD8B	926	broad.mit.edu	37	2	87042596	87042596	+	3'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD97	976	broad.mit.edu	37	19	14515372	14515372	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14A	8556	broad.mit.edu	37	1	100874165	100874165	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC16	8881	broad.mit.edu	37	13	115016178	115016178	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20B	166979	broad.mit.edu	37	5	54410353	54410353	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20B	166979	broad.mit.edu	37	5	54415560	54415561	+	Intron	DNP	GG	CT	CT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20B	166979	broad.mit.edu	37	5	54415663	54415663	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC73	79577	broad.mit.edu	37	1	193091533	193091533	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC73	79577	broad.mit.edu	37	1	193190084	193190085	+	Intron	DEL	AT	-	-	rs147182466		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCP1	64866	broad.mit.edu	37	3	45132961	45132961	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24488111	24488112	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24491640	24491640	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24491723	24491723	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24511552	24511552	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65006665	65006665	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65020306	65020306	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65038540	65038540	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65101831	65101831	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65109524	65109524	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21751862	21751862	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21884546	21884546	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21975282	21975282	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21975417	21975418	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22142659	22142659	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	82732878	82732878	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	82813117	82813117	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83151461	83151461	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83597571	83597571	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83598683	83598683	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95186160	95186160	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59059275	59059275	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44815306	44815306	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44815719	44815719	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44846967	44846967	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44850045	44850045	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44852722	44852722	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44884198	44884198	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44889375	44889375	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44938568	44938568	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73195484	73195484	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73485098	73485098	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73544806	73544806	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25532211	25532211	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25543473	25543473	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25555616	25555616	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25591687	25591688	+	Intron	DEL	TA	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH3	1001	broad.mit.edu	37	16	68713832	68713832	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60416915	60416915	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH5	1003	broad.mit.edu	37	16	66424286	66424286	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH5	1003	broad.mit.edu	37	16	66424346	66424346	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31226646	31226647	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31316245	31316245	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31316247	31316247	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31317742	31317742	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63476886	63476886	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63489524	63489524	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63526210	63526210	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61687535	61687535	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61687698	61687698	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61761241	61761241	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61793359	61793359	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61854963	61854963	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26962180	26962180	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176002107	176002107	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176016154	176016154	+	Silent	SNP	C	A	A	rs116761490	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK11A	728642	broad.mit.edu	37	1	1636273	1636273	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202689436	202689436	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK3	1018	broad.mit.edu	37	17	74001319	74001319	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123166239	123166239	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK6	1021	broad.mit.edu	37	7	92403901	92403901	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK6	1021	broad.mit.edu	37	7	92423854	92423854	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKAL1	54901	broad.mit.edu	37	6	20584823	20584823	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKAL1	54901	broad.mit.edu	37	6	21038864	21038864	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL1	8814	broad.mit.edu	37	14	50845129	50845129	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDON	50937	broad.mit.edu	37	11	125871775	125871775	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDRT4	284040	broad.mit.edu	37	17	15353681	15353681	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDX1	1044	broad.mit.edu	37	5	149563052	149563052	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDX4	1046	broad.mit.edu	37	X	72673314	72673314	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL2	124359	broad.mit.edu	37	16	80758153	80758153	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM18	729767	broad.mit.edu	37	19	51979989	51979989	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM19	56971	broad.mit.edu	37	19	45175829	45175829	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM20	125931	broad.mit.edu	37	19	45024771	45024771	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM5	1048	broad.mit.edu	37	19	42222341	42222341	+	Intron	SNP	C	A	A	rs79835792	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA1	1990	broad.mit.edu	37	12	51723338	51723338	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3B	23436	broad.mit.edu	37	1	22310525	22310525	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF2	10659	broad.mit.edu	37	10	11112293	11112294	+	Intron	DNP	GG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34853144	34853144	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34887079	34887079	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	35047119	35047119	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	35060240	35060240	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	35062483	35062483	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	35064496	35064496	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	35141987	35141987	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR2	1952	broad.mit.edu	37	1	109795318	109795318	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR2	1952	broad.mit.edu	37	1	109795370	109795370	+	Missense_Mutation	SNP	G	A	A	rs138048818	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR2	1952	broad.mit.edu	37	1	109805604	109805604	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48697556	48697556	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104066267	104066267	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117265080	117265080	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117278678	117278678	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13042501	13042501	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP250	11190	broad.mit.edu	37	20	34091361	34091361	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP350	9857	broad.mit.edu	37	1	180006108	180006108	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP63	80254	broad.mit.edu	37	3	134264753	134264753	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55856682	55856682	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55862837	55862837	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55864685	55864686	+	Intron	INS	-	GAAG	GAAG	rs71898769		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55890240	55890240	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55890296	55890296	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETP	1071	broad.mit.edu	37	16	57003747	57003748	+	Intron	DNP	CT	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31910936	31910936	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR1	3078	broad.mit.edu	37	1	196797377	196797377	+	Splice_Site	SNP	G	T	T	rs112994000		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR3	10878	broad.mit.edu	37	1	196749059	196749059	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR4	10877	broad.mit.edu	37	1	196874425	196874425	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFTR	1080	broad.mit.edu	37	7	117175518	117175518	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGNL1	84952	broad.mit.edu	37	15	57767589	57767589	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD3	54927	broad.mit.edu	37	7	132493216	132493216	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD1	1105	broad.mit.edu	37	5	98193850	98193850	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6190453	6190454	+	Intron	DNP	TG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6212594	6212594	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40033947	40033947	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40049655	40049655	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40102043	40102043	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61749598	61749598	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHERP	10523	broad.mit.edu	37	19	16648022	16648022	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHI3L2	1117	broad.mit.edu	37	1	111781621	111781621	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHID1	66005	broad.mit.edu	37	11	903072	903072	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIT1	1118	broad.mit.edu	37	1	203188234	203188235	+	Intron	DNP	GG	CT	CT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	424321	424321	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	443448	443448	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	447494	447494	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHML	1122	broad.mit.edu	37	1	241798502	241798502	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHODL	140578	broad.mit.edu	37	21	19629135	19629135	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136662861	136662861	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136700640	136700640	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	239762382	239762382	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	239936009	239936009	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	240070781	240070781	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	240071185	240071185	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA1	1134	broad.mit.edu	37	2	175618462	175618462	+	Missense_Mutation	SNP	C	G	G	rs145421881		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB4	1143	broad.mit.edu	37	15	78917398	78917398	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST11	50515	broad.mit.edu	37	12	104900457	104900457	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST11	50515	broad.mit.edu	37	12	104918395	104918395	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST11	50515	broad.mit.edu	37	12	105151495	105151495	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST6	4166	broad.mit.edu	37	16	75512678	75512678	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHSY3	337876	broad.mit.edu	37	5	129476986	129476986	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIAPIN1	57019	broad.mit.edu	37	16	57464047	57464047	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIDEC	63924	broad.mit.edu	37	3	10035779	10035783	+	Intron	DEL	AGTCT	-	-	rs35714562		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIR1	9541	broad.mit.edu	37	2	175252567	175252567	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120214606	120214606	+	Missense_Mutation	SNP	T	A	A	rs149250142	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP2L	150468	broad.mit.edu	37	2	113514405	113514405	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46829544	46829544	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKLF	51192	broad.mit.edu	37	16	66586477	66586477	+	5'UTR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA1	1179	broad.mit.edu	37	1	86942072	86942072	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA1	1179	broad.mit.edu	37	1	86952762	86952762	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA1	1179	broad.mit.edu	37	1	86960013	86960013	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87040320	87040320	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN3	1182	broad.mit.edu	37	4	170601243	170601243	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN6	1185	broad.mit.edu	37	1	11898367	11898367	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN11	5010	broad.mit.edu	37	3	170441957	170441957	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN16	10686	broad.mit.edu	37	3	190126181	190126181	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN17	26285	broad.mit.edu	37	21	31538609	31538609	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN17	26285	broad.mit.edu	37	21	31538616	31538616	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN17	26285	broad.mit.edu	37	21	31538712	31538712	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN8	9073	broad.mit.edu	37	21	31588216	31588216	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN9	9080	broad.mit.edu	37	16	3063874	3063874	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDND1	56650	broad.mit.edu	37	3	98244083	98244083	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC12A	160364	broad.mit.edu	37	12	10133380	10133380	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC16A	23274	broad.mit.edu	37	16	11056252	11056252	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC17A	388512	broad.mit.edu	37	19	14707557	14707557	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC18B	497190	broad.mit.edu	37	16	74444941	74444942	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC18C	283971	broad.mit.edu	37	16	70013124	70013124	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC18C	283971	broad.mit.edu	37	16	70013160	70013160	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4F	165530	broad.mit.edu	37	2	71037053	71037053	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC5A	23601	broad.mit.edu	37	7	141633911	141633911	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC6A	93978	broad.mit.edu	37	12	8628802	8628802	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC9A	283420	broad.mit.edu	37	12	10217499	10217499	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122763534	122763534	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73811555	73811555	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP3	25999	broad.mit.edu	37	19	36508196	36508196	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN5	1203	broad.mit.edu	37	13	77565586	77565587	+	5'Flank	DEL	GG	-	-	rs67752342		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPB	81570	broad.mit.edu	37	11	72074248	72074248	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	139713234	139713234	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140122633	140122633	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140124854	140124854	+	Intron	DEL	A	-	-	rs34368982		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN3	9746	broad.mit.edu	37	12	7284340	7284341	+	Intron	INS	-	GCCTCCTA	GCCTCCTA	rs139362595	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN3	9746	broad.mit.edu	37	12	7301414	7301414	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTA	1211	broad.mit.edu	37	9	36197460	36197460	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLUL1	27098	broad.mit.edu	37	18	619382	619382	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123384699	123384699	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMKLR1	1240	broad.mit.edu	37	12	108686013	108686013	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMTM1	113540	broad.mit.edu	37	16	66612743	66612743	+	Missense_Mutation	SNP	C	G	G	rs150823211		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMTM5	116173	broad.mit.edu	37	14	23847948	23847948	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79028116	79028116	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79058792	79058792	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP1	84735	broad.mit.edu	37	18	72226588	72226588	+	Missense_Mutation	SNP	G	T	T	rs142534952		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP1	84735	broad.mit.edu	37	18	72226763	72226763	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA1	1259	broad.mit.edu	37	4	47942862	47942862	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99012599	99012599	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99013354	99013354	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57953129	57953129	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87670413	87670413	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87674106	87674106	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNIH3	149111	broad.mit.edu	37	1	224922382	224922383	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNIH4	29097	broad.mit.edu	37	1	224563574	224563574	+	3'UTR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21666912	21666913	+	Intron	INS	-	T	T	rs5901679		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR3	154043	broad.mit.edu	37	6	154763079	154763079	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNN1	1264	broad.mit.edu	37	19	11657608	11657608	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNNM1	26507	broad.mit.edu	37	10	101136906	101136907	+	Nonsense_Mutation	DNP	CA	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNNM2	54805	broad.mit.edu	37	10	104679104	104679104	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT10	25904	broad.mit.edu	37	3	32761609	32761609	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT2	4848	broad.mit.edu	37	12	70723271	70723271	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT3	4849	broad.mit.edu	37	19	54649193	54649193	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT4	4850	broad.mit.edu	37	7	135047791	135047791	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTD1	124817	broad.mit.edu	37	17	40956051	40956051	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTFR	1271	broad.mit.edu	37	9	34556335	34556335	+	Missense_Mutation	SNP	G	A	A	rs145978650		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTFR	1271	broad.mit.edu	37	9	34580072	34580072	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17463043	17463043	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17493128	17493129	+	Intron	INS	-	A	A	rs142848712	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41199120	41199120	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41323558	41323558	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41323682	41323682	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41410621	41410621	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41422924	41422924	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41441374	41441374	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41463718	41463719	+	Intron	DEL	TG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74350660	74350660	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74420602	74420602	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2389059	2389060	+	Intron	INS	-	ATGG	ATGG	rs144545653		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2967492	2967492	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100114241	100114241	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	98942681	98942681	+	Intron	DEL	A	-	-	rs35059303		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99223662	99223662	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99786983	99786983	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99959983	99959983	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99993507	99993507	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	145944603	145944603	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146288187	146288187	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146805468	146805468	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146864426	146864426	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147259199	147259199	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147336298	147336298	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147384392	147384392	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147482453	147482453	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147600746	147600746	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147930398	147930398	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147942361	147942361	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39086799	39086799	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39171285	39171285	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39176063	39176063	+	Silent	SNP	G	T	T	rs142785222	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76382501	76382501	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76555866	76555866	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	124854406	124854406	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125083729	125083729	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125285190	125285190	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125367303	125367303	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125498123	125498123	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125516320	125516320	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125526947	125526947	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125611007	125611007	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125611470	125611470	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125611661	125611661	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125624066	125624066	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125627248	125627248	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125660604	125660604	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBLL1	22837	broad.mit.edu	37	2	165559819	165559819	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51095861	51095861	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG6	57511	broad.mit.edu	37	13	40342257	40342258	+	Intron	DEL	AT	-	-	rs142546274		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COIL	8161	broad.mit.edu	37	17	55038405	55038405	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103352455	103352455	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103427665	103427665	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103427757	103427757	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103453106	103453106	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103470072	103470072	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103492005	103492005	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33153417	33153417	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75798880	75798880	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75804746	75804746	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75840942	75840942	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75843928	75843928	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75856113	75856113	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75898087	75898087	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71654423	71654423	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121138171	121138171	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121239508	121239508	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121379503	121379503	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101751637	101751637	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101767101	101767101	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101784856	101784856	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32130960	32130960	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32167843	32167843	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105794590	105794590	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105799241	105799241	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70745795	70745795	+	Splice_Site	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70778423	70778423	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70847823	70847823	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70861423	70861424	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70866215	70866215	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70886533	70886533	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70897851	70897851	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	55924148	55924148	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	56021648	56021648	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	56044485	56044485	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	56079884	56079885	+	Intron	DEL	TG	-	-	rs142467983		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	56178021	56178021	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	56259084	56259084	+	5'Flank	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139629199	139629199	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139774752	139774752	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139819870	139819870	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139877741	139877741	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139885028	139885028	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86252220	86252220	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86282459	86282459	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86324325	86324325	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86529438	86529438	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109810736	109810736	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7476218	7476218	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7491812	7491812	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7572451	7572451	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130162166	130162166	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48370314	48370314	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48375878	48375878	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48391620	48391620	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189856420	189856420	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189856422	189856422	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189866155	189866155	+	Silent	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189866206	189866206	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189868724	189868724	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110807605	110807605	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110822021	110822021	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110838702	110838702	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111008128	111008128	+	Intron	DEL	T	-	-	rs67063831		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111143618	111143618	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227912134	227912134	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107863584	107863584	+	Missense_Mutation	SNP	G	A	A	rs104886189		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107408244	107408244	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107479355	107479355	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137704366	137704366	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189898752	189898752	+	3'UTR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189914108	189914108	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189926206	189926206	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189931133	189931133	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189944597	189944597	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10071663	10071664	+	Intron	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10084199	10084199	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10087928	10087928	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238243552	238243552	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238257321	238257321	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238283544	238283544	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238287348	238287348	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238289978	238289978	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48627953	48627953	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70935491	70935491	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70949038	70949038	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70965173	70965173	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	71004046	71004046	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61468494	61468494	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3682638	3682638	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC12	81035	broad.mit.edu	37	18	460317	460317	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLQ	8292	broad.mit.edu	37	3	15505645	15505646	+	Intron	INS	-	G	G	rs138820065	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLQ	8292	broad.mit.edu	37	3	15515465	15515465	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD10	51397	broad.mit.edu	37	5	115617619	115617619	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160287043	160287044	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160304968	160304968	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG2	26958	broad.mit.edu	37	7	130295855	130295855	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG	22820	broad.mit.edu	37	3	128995987	128995987	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ2	27235	broad.mit.edu	37	4	84200090	84200090	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ5	84274	broad.mit.edu	37	12	120960118	120960118	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ6	51004	broad.mit.edu	37	14	74422031	74422031	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47605192	47605192	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47667172	47667172	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47788873	47788873	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO2B	10391	broad.mit.edu	37	15	68976816	68976816	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO6	84940	broad.mit.edu	37	17	27946258	27946258	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORT	1325	broad.mit.edu	37	1	10510335	10510335	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX18	285521	broad.mit.edu	37	4	73930892	73930893	+	Intron	INS	-	G	G	rs79402424		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX7A2L	9167	broad.mit.edu	37	2	42579417	42579417	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX8C	341947	broad.mit.edu	37	14	93813686	93813686	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130021212	130021212	+	Intron	SNP	G	T	T	rs34470117		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148586791	148586791	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	129986523	129986523	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	130007797	130007797	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA6	57094	broad.mit.edu	37	8	68397076	68397076	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPAMD8	27151	broad.mit.edu	37	19	17039981	17039981	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPAMD8	27151	broad.mit.edu	37	19	17057974	17057974	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166322204	166322205	+	Intron	INS	-	T	T	rs147334562	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPLX2	10814	broad.mit.edu	37	5	175306055	175306055	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPM	1368	broad.mit.edu	37	12	69349285	69349285	+	Intron	DEL	G	-	-	rs66949427		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN1	1369	broad.mit.edu	37	10	101808580	101808580	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN2	1370	broad.mit.edu	37	3	194062798	194062798	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN2	1370	broad.mit.edu	37	3	194062982	194062982	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE2	221184	broad.mit.edu	37	16	57149361	57149361	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131320629	131320629	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131807560	131807564	+	Intron	DEL	AGGGG	-	-	rs6439342		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131875127	131875127	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131894741	131894741	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE5	57699	broad.mit.edu	37	6	36711568	36711568	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE8	144402	broad.mit.edu	37	12	39266773	39266774	+	Intron	DNP	CC	GA	GA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE9	151835	broad.mit.edu	37	3	9771458	9771458	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211465309	211465309	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211477065	211477065	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211521386	211521386	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211527882	211527882	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211539832	211539832	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF2	53981	broad.mit.edu	37	14	92625723	92625723	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF3	51692	broad.mit.edu	37	2	9606390	9606403	+	Intron	DEL	CACAAAGACGCACG	-	-	rs60696786	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1A	1374	broad.mit.edu	37	11	68552485	68552485	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPVL	54504	broad.mit.edu	37	7	29111658	29111658	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPVL	54504	broad.mit.edu	37	7	29111968	29111968	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2778897	2778897	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125554942	125554942	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CP	1356	broad.mit.edu	37	3	148928163	148928163	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207867583	207867584	+	Intron	DNP	CT	TA	TA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207680057	207680057	+	Splice_Site	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207696917	207696917	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207726002	207726002	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207800118	207800118	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRADD	8738	broad.mit.edu	37	12	94157148	94157149	+	Intron	INS	-	A	A	rs145672453	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197297505	197297505	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28731184	28731184	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3860403	3860403	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43907345	43907345	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIP3	401262	broad.mit.edu	37	6	43274275	43274275	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIPAK	285464	broad.mit.edu	37	4	1389117	1389118	+	Frame_Shift_Ins	INS	-	AT	AT	rs148256082	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP1	167	broad.mit.edu	37	6	49803073	49803073	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP2	7180	broad.mit.edu	37	6	49677086	49677086	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP3	10321	broad.mit.edu	37	6	49704449	49704449	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD1	83690	broad.mit.edu	37	8	75929681	75929681	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRMP1	1400	broad.mit.edu	37	4	5859836	5859836	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16952769	16952769	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16956821	16956821	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16960418	16960418	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17266478	17266478	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAM	56253	broad.mit.edu	37	11	122720757	122720757	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC2	200186	broad.mit.edu	37	1	153920923	153920923	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF1R	1436	broad.mit.edu	37	5	149456850	149456850	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF3R	1441	broad.mit.edu	37	1	36937562	36937562	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT1	55790	broad.mit.edu	37	8	19315715	19315715	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT1	55790	broad.mit.edu	37	8	19328723	19328723	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2855626	2855626	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2876216	2876216	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3045484	3045485	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3046426	3046426	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3046430	3046430	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3165098	3165098	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4757713	4757713	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34006578	34006578	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34066735	34066735	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34067958	34067958	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34242967	34242967	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34254402	34254402	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34260576	34260576	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34261232	34261232	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34275344	34275345	+	Intron	INS	-	T	T	rs138924595	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34404788	34404788	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34450513	34450513	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34452428	34452428	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34470531	34470531	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113293389	113293389	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113323366	113323366	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113326625	113326625	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113662443	113662443	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113697652	113697652	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114389030	114389030	+	Intron	SNP	C	T	T	rs34910338		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114389069	114389069	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114389078	114389078	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114389149	114389149	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK2A1P	283106	broad.mit.edu	37	11	11373804	11373804	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPG4	1464	broad.mit.edu	37	15	75983079	75983079	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRNP3	80034	broad.mit.edu	37	2	166532870	166532870	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRNP3	80034	broad.mit.edu	37	2	166535163	166535163	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP2BP	57325	broad.mit.edu	37	20	18143407	18143407	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP2BP	57325	broad.mit.edu	37	20	18168094	18168094	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST11	140880	broad.mit.edu	37	20	23433449	23433449	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST4	1472	broad.mit.edu	37	20	23669238	23669238	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST8	10047	broad.mit.edu	37	20	23472165	23472165	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST9L	128821	broad.mit.edu	37	20	23548945	23548946	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST9	128822	broad.mit.edu	37	20	23584119	23584119	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF1	1477	broad.mit.edu	37	20	54974030	54974030	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39784077	39784077	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTBP2	1488	broad.mit.edu	37	10	126715712	126715712	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTH	1491	broad.mit.edu	37	1	70904437	70904437	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA1	1495	broad.mit.edu	37	5	138266022	138266022	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	79463062	79463062	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	79596602	79596602	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	79634828	79634828	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	79812877	79812877	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80085187	80085187	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80097065	80097065	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80751240	80751241	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68979338	68979338	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	69011415	69011415	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNBL1	56259	broad.mit.edu	37	20	36390243	36390243	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNBL1	56259	broad.mit.edu	37	20	36396332	36396332	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNBL1	56259	broad.mit.edu	37	20	36476650	36476650	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND1	1500	broad.mit.edu	37	11	57578823	57578823	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11012511	11012511	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11098682	11098682	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11159704	11159704	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11181868	11181868	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11223074	11223074	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11236872	11236872	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11346382	11346382	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11586618	11586618	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSE	1510	broad.mit.edu	37	1	206318450	206318450	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSL2	1515	broad.mit.edu	37	9	99799465	99799465	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16932541	16932541	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16960652	16960652	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16970062	16970062	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16970399	16970399	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUEDC1	404093	broad.mit.edu	37	17	55945054	55945054	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43164002	43164002	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43168743	43168743	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUTC	51076	broad.mit.edu	37	10	101502997	101502997	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUTC	51076	broad.mit.edu	37	10	101515326	101515326	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111655648	111655648	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWF19L2	143884	broad.mit.edu	37	11	107274415	107274415	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWF19L2	143884	broad.mit.edu	37	11	107288935	107288935	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	48994268	48994268	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADRP2	646243	broad.mit.edu	37	15	22016307	22016307	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL3	2921	broad.mit.edu	37	4	74902951	74902951	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR5	643	broad.mit.edu	37	11	118764713	118764713	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR7	57007	broad.mit.edu	37	2	237490011	237490011	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf40B	541578	broad.mit.edu	37	X	149101815	149101815	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf40B	541578	broad.mit.edu	37	X	149101928	149101928	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf57	55086	broad.mit.edu	37	X	105921297	105921297	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf66	347487	broad.mit.edu	37	X	139038576	139038576	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22963965	22963965	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143955642	143955642	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143994156	143994157	+	Intron	DNP	CA	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143995867	143995867	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143996514	143996514	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP17A1	1586	broad.mit.edu	37	10	104592983	104592983	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP19A1	1588	broad.mit.edu	37	15	51539284	51539284	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP19A1	1588	broad.mit.edu	37	15	51555471	51555471	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP19A1	1588	broad.mit.edu	37	15	51605091	51605091	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1A1	1543	broad.mit.edu	37	15	75013378	75013378	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27A1	1593	broad.mit.edu	37	2	219674535	219674535	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27C1	339761	broad.mit.edu	37	2	127945071	127945071	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27C1	339761	broad.mit.edu	37	2	127960975	127960975	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A6	1548	broad.mit.edu	37	19	41356192	41356192	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41387381	41387381	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41456995	41456995	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41482807	41482808	+	Intron	DNP	CC	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41521167	41521167	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41521197	41521197	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C18	1562	broad.mit.edu	37	10	96447796	96447796	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	42014979	42014979	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2U1	113612	broad.mit.edu	37	4	108868577	108868579	+	In_Frame_Del	DEL	CTC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A5	1577	broad.mit.edu	37	7	99261766	99261766	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A5	1577	broad.mit.edu	37	7	99277430	99277430	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP46A1	10858	broad.mit.edu	37	14	100166295	100166295	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4A11	1579	broad.mit.edu	37	1	47394997	47394997	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4A11	1579	broad.mit.edu	37	1	47403054	47403054	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4B1	1580	broad.mit.edu	37	1	47284381	47284381	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4B1	1580	broad.mit.edu	37	1	47284599	47284599	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4B1	1580	broad.mit.edu	37	1	47284638	47284638	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F11	57834	broad.mit.edu	37	19	16025117	16025117	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F22	126410	broad.mit.edu	37	19	15640433	15640433	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	15995803	15995807	+	Intron	DEL	CCAGC	-	-	rs75726977	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F3	4051	broad.mit.edu	37	19	15760797	15760797	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F3	4051	broad.mit.edu	37	19	15764686	15764686	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F8	11283	broad.mit.edu	37	19	15726377	15726377	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4V2	285440	broad.mit.edu	37	4	187122322	187122322	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP8B1	1582	broad.mit.edu	37	3	42917361	42917361	+	5'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH4	27128	broad.mit.edu	37	22	37690552	37690552	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH4	27128	broad.mit.edu	37	22	37695347	37695348	+	Splice_Site	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTSB	92521	broad.mit.edu	37	17	20108291	20108291	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM2	23500	broad.mit.edu	37	6	39811616	39811616	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57969041	57969041	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57969281	57969281	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57970257	57970257	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58203356	58203356	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58231321	58231321	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58301328	58301328	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58403282	58403282	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58503090	58503090	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58514271	58514271	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58514842	58514842	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58694436	58694436	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58895869	58895869	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2IP	153090	broad.mit.edu	37	9	124528955	124528955	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39377118	39377118	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39383268	39383268	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72049785	72049785	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85559581	85559581	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85769279	85769279	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAGLB	221955	broad.mit.edu	37	7	6474681	6474681	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAGLB	221955	broad.mit.edu	37	7	6476347	6476347	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAK	26007	broad.mit.edu	37	11	61106796	61106796	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DARC	2532	broad.mit.edu	37	1	159175960	159175960	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DARC	2532	broad.mit.edu	37	1	159176115	159176115	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZL	1618	broad.mit.edu	37	3	16633460	16633460	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBN1	1627	broad.mit.edu	37	5	176893512	176893512	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBN1	1627	broad.mit.edu	37	5	176894570	176894570	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBX1	120237	broad.mit.edu	37	11	20178296	20178296	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885654	88885654	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L2	347442	broad.mit.edu	37	X	27766465	27766465	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L2	347442	broad.mit.edu	37	X	27766653	27766653	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCBLD1	285761	broad.mit.edu	37	6	117860647	117860647	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCBLD1	285761	broad.mit.edu	37	6	117890661	117890661	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	49913910	49913910	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	49954300	49954300	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50197688	50197688	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50432543	50432543	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50705443	50705443	+	Frame_Shift_Del	DEL	G	-	-	rs151271207		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50742046	50742046	+	Intron	SNP	G	A	A	rs139122378	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31230285	31230285	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31327937	31327937	+	Splice_Site	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCD	117159	broad.mit.edu	37	12	55038903	55038903	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6653761	6653761	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155155626	155155626	+	3'UTR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155180878	155180878	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36443353	36443353	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36759400	36759400	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36767928	36767928	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36768151	36768151	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP1B	196513	broad.mit.edu	37	12	2064388	2064388	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST1	149095	broad.mit.edu	37	1	155006731	155006731	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D1	54165	broad.mit.edu	37	3	182665025	182665025	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D4	23142	broad.mit.edu	37	4	52740376	52740376	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D4	23142	broad.mit.edu	37	4	52757001	52757001	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDAH1	23576	broad.mit.edu	37	1	85791038	85791039	+	Intron	DEL	GC	-	-	rs71783231		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61088907	61088907	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDC	1644	broad.mit.edu	37	7	50531141	50531141	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI2	84301	broad.mit.edu	37	1	15970134	15970134	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDOST	1650	broad.mit.edu	37	1	20979549	20979549	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX10	1662	broad.mit.edu	37	11	108752962	108752962	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX21	9188	broad.mit.edu	37	10	70726924	70726924	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX23	9416	broad.mit.edu	37	12	49231390	49231390	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX25	29118	broad.mit.edu	37	11	125780320	125780320	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX41	51428	broad.mit.edu	37	5	176938993	176938993	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX41	51428	broad.mit.edu	37	5	176940670	176940670	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX4	54514	broad.mit.edu	37	5	55086696	55086696	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX58	23586	broad.mit.edu	37	9	32481382	32481382	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX58	23586	broad.mit.edu	37	9	32492368	32492368	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169296600	169296600	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169343778	169343778	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DECR1	1666	broad.mit.edu	37	8	91040322	91040322	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEF8	54849	broad.mit.edu	37	16	90028048	90028048	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEF8	54849	broad.mit.edu	37	16	90028216	90028216	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEF8	54849	broad.mit.edu	37	16	90028277	90028277	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB110	245913	broad.mit.edu	37	6	49989677	49989677	+	5'UTR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB115	245929	broad.mit.edu	37	20	29847318	29847318	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB118	117285	broad.mit.edu	37	20	29956750	29956750	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB122	245935	broad.mit.edu	37	20	30009273	30009273	+	RNA	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEM1	64789	broad.mit.edu	37	1	40980948	40980948	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126605807	126605807	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197479707	197479707	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197515799	197515799	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197611788	197611788	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140285649	140285649	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2C	163259	broad.mit.edu	37	1	115153635	115153635	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND3	22898	broad.mit.edu	37	8	142162069	142162069	+	Intron	SNP	G	T	T	rs77041703	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4A	10260	broad.mit.edu	37	15	65998502	65998502	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4A	10260	broad.mit.edu	37	15	66044686	66044686	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31566440	31566441	+	Silent	DNP	TT	GA	GA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC6	64798	broad.mit.edu	37	8	120977584	120977584	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DET1	55070	broad.mit.edu	37	15	89073702	89073702	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB59	494513	broad.mit.edu	37	2	179323189	179323189	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKA	1606	broad.mit.edu	37	12	56333546	56333546	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14378218	14378218	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14453374	14453374	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14620456	14620456	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14722442	14722442	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14733684	14733684	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKD	8527	broad.mit.edu	37	2	234297019	234297019	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKD	8527	broad.mit.edu	37	2	234356867	234356867	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137170043	137170043	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137198676	137198676	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137266580	137266580	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137330148	137330148	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137374814	137374814	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137406805	137406805	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50133271	50133271	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50167246	50167246	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHCR24	1718	broad.mit.edu	37	1	55337000	55337000	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS3	9249	broad.mit.edu	37	1	12632723	12632723	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS7B	25979	broad.mit.edu	37	17	21075495	21075495	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS7	51635	broad.mit.edu	37	14	60619815	60619815	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHTKD1	55526	broad.mit.edu	37	10	12131232	12131232	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX34	9704	broad.mit.edu	37	19	47879292	47879292	+	Missense_Mutation	SNP	G	T	T	rs144080741		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX37	57647	broad.mit.edu	37	12	125432557	125432557	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182847117	182847117	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO2	1734	broad.mit.edu	37	14	80669222	80669222	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO2	1734	broad.mit.edu	37	14	80677838	80677838	+	5'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO3	1735	broad.mit.edu	37	14	102028809	102028809	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	370974	370974	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC1	116093	broad.mit.edu	37	2	189628869	189628869	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC2	84925	broad.mit.edu	37	3	122575375	122575375	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC3	729582	broad.mit.edu	37	2	218550870	218550871	+	Intron	DEL	AT	-	-	rs56996717		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC3	729582	broad.mit.edu	37	2	218571638	218571638	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3	22894	broad.mit.edu	37	13	73334092	73334092	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3	22894	broad.mit.edu	37	13	73347171	73347171	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISC1	27185	broad.mit.edu	37	1	231829629	231829629	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISC1	27185	broad.mit.edu	37	1	231829710	231829710	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISC1	27185	broad.mit.edu	37	1	232042116	232042116	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP2	85455	broad.mit.edu	37	15	40657944	40657944	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107859456	107859456	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK3	27122	broad.mit.edu	37	11	11989878	11989878	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLC1	10395	broad.mit.edu	37	8	13357088	13357088	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83203845	83203845	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83361200	83361200	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83601878	83601878	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83929401	83929402	+	Intron	DEL	GC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84642381	84642381	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84726237	84726237	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	85296881	85296881	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG3	1741	broad.mit.edu	37	X	69698879	69698879	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG4	1742	broad.mit.edu	37	17	7107081	7107081	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3847434	3847434	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	4175828	4175828	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	4260258	4260258	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP3	58512	broad.mit.edu	37	1	35367527	35367527	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124389538	124389538	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31224699	31224699	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31986449	31986449	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32466604	32466604	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32536046	32536046	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMKN	93099	broad.mit.edu	37	19	35991573	35991573	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT2	10655	broad.mit.edu	37	9	1053646	1053646	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT2	10655	broad.mit.edu	37	9	1056572	1056572	+	Missense_Mutation	SNP	G	A	A	rs142906421		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT2	10655	broad.mit.edu	37	9	1057311	1057311	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT3	58524	broad.mit.edu	37	9	990458	990458	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118469760	118469760	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL2	23312	broad.mit.edu	37	15	51830521	51830521	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL2	23312	broad.mit.edu	37	15	51839695	51839695	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124418218	124418218	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21599337	21599337	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21631259	21631259	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21698649	21698650	+	Splice_Site	DNP	GG	CT	CT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21723605	21723605	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21760405	21760405	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21760504	21760504	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21760641	21760641	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21781538	21781538	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21826206	21826206	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21826313	21826313	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21858139	21858139	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH12	201625	broad.mit.edu	37	3	57356409	57356409	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH14	127602	broad.mit.edu	37	1	225152315	225152317	+	Intron	DEL	TTG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH17	8632	broad.mit.edu	37	17	76558088	76558088	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52384214	52384214	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52392660	52392660	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52394113	52394113	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7704685	7704685	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH6	1768	broad.mit.edu	37	2	84924788	84924788	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196699047	196699047	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196722071	196722071	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196729269	196729269	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196749218	196749218	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196787589	196787589	+	Intron	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196791236	196791236	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196852571	196852571	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196852575	196852575	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196874831	196874831	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196917862	196917862	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38891042	38891042	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38954419	38954419	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38998255	38998255	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11511758	11511758	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11550653	11550653	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11647993	11647993	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11684290	11684290	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11725498	11725498	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI1	27019	broad.mit.edu	37	9	34483302	34483302	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB3	414061	broad.mit.edu	37	2	234652531	234652531	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB8	165721	broad.mit.edu	37	3	128181684	128181684	+	Silent	SNP	C	A	A	rs148940950	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132172986	132172986	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132203429	132203429	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC16	23341	broad.mit.edu	37	1	15874838	15874838	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC1	64215	broad.mit.edu	37	10	22209839	22209839	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC27	51277	broad.mit.edu	37	2	25174051	25174051	+	Intron	SNP	C	A	A	rs149300945	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC5B	85479	broad.mit.edu	37	8	66963826	66963826	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC5B	85479	broad.mit.edu	37	8	66992566	66992566	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC7	7266	broad.mit.edu	37	17	40152439	40152439	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230231585	230231585	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230298008	230298008	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230305798	230305798	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNHD1	144132	broad.mit.edu	37	11	6592889	6592889	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM1	1759	broad.mit.edu	37	9	130982360	130982360	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3L	29947	broad.mit.edu	37	21	45671573	45671573	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98087245	98087245	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225638017	225638018	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225714117	225714117	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117810668	117810668	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169108836	169108836	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169126557	169126557	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169135313	169135313	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169141280	169141280	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169141688	169141688	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169157525	169157525	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169172900	169172900	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169402164	169402164	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169402166	169402166	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169504618	169504618	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111424283	111424283	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111575871	111575871	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63113986	63113986	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	340350	340350	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	420997	420997	+	Silent	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK5	55816	broad.mit.edu	37	20	53208123	53208123	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK6	220164	broad.mit.edu	37	18	67085034	67085034	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPCD	25911	broad.mit.edu	37	10	103348126	103348126	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP2	64174	broad.mit.edu	37	16	68023168	68023168	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP3	64180	broad.mit.edu	37	16	68011701	68011701	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF3	8110	broad.mit.edu	37	14	73353392	73353392	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	115990125	115990125	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116456143	116456143	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116456152	116456152	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116538575	116538575	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP3	10072	broad.mit.edu	37	11	66262853	66262853	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162875432	162875432	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	153639633	153639633	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	153653489	153653489	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	153654667	153654667	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154384372	154384372	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154595515	154595515	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154684299	154684299	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA2	151871	broad.mit.edu	37	3	109019205	109019205	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA3	359787	broad.mit.edu	37	12	7869550	7869550	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA4	55211	broad.mit.edu	37	3	109050771	109050771	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA5	340168	broad.mit.edu	37	6	74063590	74063590	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35131338	35131338	+	Intron	SNP	C	A	A	rs140174950	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P2	349152	broad.mit.edu	37	7	102825874	102825874	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P2	349152	broad.mit.edu	37	7	102835782	102835782	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32945898	32945898	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32971438	32971438	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL3	1809	broad.mit.edu	37	5	146792222	146792222	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27165429	27165429	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105393457	105393457	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113850265	113850265	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC2	1824	broad.mit.edu	37	18	28672253	28672253	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28574419	28574419	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28598167	28598167	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117310621	117310621	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117376665	117376665	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41451740	41451740	+	Intron	DEL	G	-	-	rs5843997		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41550754	41550754	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41555291	41555291	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28910039	28910039	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28934679	28934679	+	Silent	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28968492	28968492	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28980940	28980940	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28986360	28986360	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSPP	1834	broad.mit.edu	37	4	88534363	88534363	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7556093	7556093	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56335963	56335963	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56433135	56433135	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56444790	56444790	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56462535	56462535	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56495287	56495287	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56765077	56765077	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTHD1	401124	broad.mit.edu	37	4	36296478	36296478	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTHD1	401124	broad.mit.edu	37	4	36340355	36340355	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTL	51514	broad.mit.edu	37	1	212240075	212240075	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32428261	32428261	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX3L	151636	broad.mit.edu	37	3	122289383	122289383	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP11	8446	broad.mit.edu	37	2	73993913	73993913	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP11	8446	broad.mit.edu	37	2	74001052	74001052	+	Splice_Site	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP12	11266	broad.mit.edu	37	1	161726734	161726734	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP15	128853	broad.mit.edu	37	20	30436419	30436419	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP19	142679	broad.mit.edu	37	2	183948215	183948215	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167083060	167083060	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167096180	167096180	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167097596	167097596	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95457225	95457225	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95616619	95616619	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1LI1	51143	broad.mit.edu	37	3	32586318	32586318	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103023009	103023009	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2LI1	51626	broad.mit.edu	37	2	44010776	44010776	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2LI1	51626	broad.mit.edu	37	2	44028653	44028653	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2LI1	51626	broad.mit.edu	37	2	44028817	44028817	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96237243	96237243	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108356315	108356315	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108392776	108392776	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F7	144455	broad.mit.edu	37	12	77421834	77421834	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F8	79733	broad.mit.edu	37	11	19261656	19261656	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158522598	158522598	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBP	10682	broad.mit.edu	37	X	48385768	48385768	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	184002974	184002974	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECEL1	9427	broad.mit.edu	37	2	233345122	233345122	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECM1	1893	broad.mit.edu	37	1	150483446	150483446	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECM2	1842	broad.mit.edu	37	9	95276838	95276838	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2	1894	broad.mit.edu	37	3	172537829	172537829	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDEM2	55741	broad.mit.edu	37	20	33722428	33722428	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83259139	83259139	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN3	1908	broad.mit.edu	37	20	57876461	57876461	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1	1915	broad.mit.edu	37	6	74228007	74228007	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2K	29904	broad.mit.edu	37	16	22284810	22284810	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEFSEC	60678	broad.mit.edu	37	3	128060514	128060514	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEPD1	80820	broad.mit.edu	37	7	36327311	36327312	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB2	84288	broad.mit.edu	37	1	245266399	245266399	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44151498	44151498	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFEMP2	30008	broad.mit.edu	37	11	65638652	65638652	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFR3A	23167	broad.mit.edu	37	8	133014173	133014173	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFL6	25975	broad.mit.edu	37	X	13596328	13596329	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFL6	25975	broad.mit.edu	37	X	13645250	13645250	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38337593	38337593	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38406921	38406921	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110884342	110884342	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1	23301	broad.mit.edu	37	2	62934444	62934444	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140637941	140637941	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140682477	140682477	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK4	440275	broad.mit.edu	37	15	40231674	40231674	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B3	8891	broad.mit.edu	37	1	45341247	45341247	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36358858	36358858	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36380999	36380999	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C3	192669	broad.mit.edu	37	1	36505660	36505660	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3B	8662	broad.mit.edu	37	7	2403421	2403421	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3E	3646	broad.mit.edu	37	8	109240540	109240540	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3H	8667	broad.mit.edu	37	8	117671153	117671153	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3H	8667	broad.mit.edu	37	8	117768099	117768099	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3IP1	442720	broad.mit.edu	37	7	109599298	109599298	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3I	8668	broad.mit.edu	37	1	32687933	32687933	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3L	51386	broad.mit.edu	37	22	38245948	38245948	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4A1	1973	broad.mit.edu	37	17	7476069	7476069	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4A3	9775	broad.mit.edu	37	17	78113719	78113720	+	Intron	DNP	CC	TA	TA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184039242	184039242	+	Missense_Mutation	SNP	G	C	C	rs144947145	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21186698	21186698	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21220026	21220026	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAC1	55520	broad.mit.edu	37	18	48513120	48513120	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL2	1993	broad.mit.edu	37	9	23762137	23762137	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL4	1996	broad.mit.edu	37	1	50610203	50610203	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL4	1996	broad.mit.edu	37	1	50610781	50610781	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL4	1996	broad.mit.edu	37	1	50653491	50653491	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELF2	1998	broad.mit.edu	37	4	140046387	140046387	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELF3	1999	broad.mit.edu	37	1	201981952	201981952	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	36901124	36901124	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37307001	37307001	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37355347	37355347	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37382418	37382418	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO2	63916	broad.mit.edu	37	20	45003281	45003281	+	Splice_Site	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107463302	107463302	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107501118	107501118	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL4	6785	broad.mit.edu	37	6	80626596	80626596	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELSPBP1	64100	broad.mit.edu	37	19	48523048	48523048	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN3	90187	broad.mit.edu	37	20	39991417	39991417	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML1	2009	broad.mit.edu	37	14	100406459	100406459	+	3'UTR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML3	256364	broad.mit.edu	37	11	62375672	62375672	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML4	27436	broad.mit.edu	37	2	42483790	42483790	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMP2	2013	broad.mit.edu	37	16	10626928	10626930	+	In_Frame_Del	DEL	GCC	-	-	rs147528512		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6894707	6894707	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6898657	6898657	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENC1	8507	broad.mit.edu	37	5	73931166	73931166	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENDOD1	23052	broad.mit.edu	37	11	94862456	94862456	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENO1	2023	broad.mit.edu	37	1	8926469	8926469	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	43865871	43865871	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111397573	111397573	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111441430	111441430	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132181434	132181434	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	131996593	131996593	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	131998973	131998973	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132448040	132448040	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132502647	132502647	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132529576	132529576	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46596975	46596975	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46607812	46607812	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46609131	46609131	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34761755	34761755	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L2	2037	broad.mit.edu	37	6	131277553	131277553	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5397212	5397212	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4A	64097	broad.mit.edu	37	5	111570404	111570404	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4A	64097	broad.mit.edu	37	5	111601918	111601918	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	111944832	111944832	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L5	57669	broad.mit.edu	37	2	120885441	120885441	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPC2	26122	broad.mit.edu	37	2	149519400	149519400	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89353714	89353714	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89391202	89391202	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89468559	89468559	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA4	2043	broad.mit.edu	37	2	222307503	222307503	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA4	2043	broad.mit.edu	37	2	222307584	222307584	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA4	2043	broad.mit.edu	37	2	222428328	222428328	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96706580	96706580	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96790661	96790661	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93965499	93965500	+	Intron	DEL	AA	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	94120810	94120810	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134859777	134859777	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134911723	134911723	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB2	2048	broad.mit.edu	37	1	23101737	23101737	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB2	2048	broad.mit.edu	37	1	23240069	23240069	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB3	2049	broad.mit.edu	37	3	184295275	184295275	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB3	2049	broad.mit.edu	37	3	184297520	184297520	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX2	2053	broad.mit.edu	37	8	27373193	27373193	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPOR	2057	broad.mit.edu	37	19	11493829	11493829	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPO	2056	broad.mit.edu	37	7	100319630	100319630	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPPK1	83481	broad.mit.edu	37	8	144942206	144942206	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220196025	220196025	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L3	79574	broad.mit.edu	37	1	110300629	110300629	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPSTI1	94240	broad.mit.edu	37	13	43500443	43500443	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56270120	56270120	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56270341	56270341	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPYC	1833	broad.mit.edu	37	12	91372093	91372093	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2IP	55914	broad.mit.edu	37	5	65279548	65279548	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2IP	55914	broad.mit.edu	37	5	65342115	65342115	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212483876	212483876	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212495153	212495153	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212589753	212589753	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC1	23085	broad.mit.edu	37	12	1137381	1137381	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC2	26059	broad.mit.edu	37	3	55746494	55746494	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC2	26059	broad.mit.edu	37	3	56469072	56469072	+	5'UTR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC3	2071	broad.mit.edu	37	2	128015076	128015076	+	3'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC4	2072	broad.mit.edu	37	16	14038813	14038813	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103528302	103528302	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERGIC1	57222	broad.mit.edu	37	5	172341675	172341675	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERG	2078	broad.mit.edu	37	21	39795437	39795437	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN1	2081	broad.mit.edu	37	17	62122776	62122776	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERO1LB	56605	broad.mit.edu	37	1	236406744	236406744	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERVFRDE1	405754	broad.mit.edu	37	6	11105476	11105476	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESAM	90952	broad.mit.edu	37	11	124624379	124624379	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESCO1	114799	broad.mit.edu	37	18	19116137	19116137	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESM1	11082	broad.mit.edu	37	5	54277989	54277989	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESR1	2099	broad.mit.edu	37	6	152045322	152045322	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESR1	2099	broad.mit.edu	37	6	152372717	152372717	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESR2	2100	broad.mit.edu	37	14	64727411	64727411	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRP1	54845	broad.mit.edu	37	8	95690554	95690554	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRB	2103	broad.mit.edu	37	14	76929261	76929261	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRB	2103	broad.mit.edu	37	14	76949017	76949017	+	Missense_Mutation	SNP	G	T	T	rs79273904	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216824097	216824097	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	217078646	217078646	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	217089142	217089142	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	217241436	217241436	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT1	23344	broad.mit.edu	37	12	56531639	56531639	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158528138	158528138	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158557340	158557340	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158580985	158580985	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETHE1	23474	broad.mit.edu	37	19	44010876	44010876	+	3'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETNK1	55500	broad.mit.edu	37	12	22797062	22797062	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128355042	128355042	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128460126	128460127	+	5'Flank	DEL	AC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV1	2115	broad.mit.edu	37	7	13940278	13940278	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV3L	440695	broad.mit.edu	37	1	157069148	157069148	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV4	2118	broad.mit.edu	37	17	41606388	41606388	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV5	2119	broad.mit.edu	37	3	185766646	185766646	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV5	2119	broad.mit.edu	37	3	185798784	185798784	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV6	2120	broad.mit.edu	37	12	12106274	12106274	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC2	132884	broad.mit.edu	37	4	5664989	5664989	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC	2121	broad.mit.edu	37	4	5812716	5812716	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EWSR1	2130	broad.mit.edu	37	22	29683136	29683136	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6	54536	broad.mit.edu	37	10	94757306	94757306	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOG	9941	broad.mit.edu	37	3	38565339	38565339	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXPH5	23086	broad.mit.edu	37	11	108381673	108381673	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72238864	72238864	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA2	2139	broad.mit.edu	37	20	45645127	45645127	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133703378	133703378	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133744192	133744192	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133802754	133802754	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133810842	133810842	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133821516	133821516	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133850080	133850080	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	65750171	65750171	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66013921	66013921	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11	2160	broad.mit.edu	37	4	187196955	187196955	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197029475	197029475	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2	2147	broad.mit.edu	37	11	46748468	46748468	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169489849	169489849	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169513503	169513503	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP1	2168	broad.mit.edu	37	2	88427410	88427410	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP3	2170	broad.mit.edu	37	1	31840171	31840171	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAF1	11124	broad.mit.edu	37	1	50941260	50941260	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAF1	11124	broad.mit.edu	37	1	51049383	51049383	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM2	23017	broad.mit.edu	37	12	50279933	50279934	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM2	23017	broad.mit.edu	37	12	50284484	50284484	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM105A	54491	broad.mit.edu	37	5	14607376	14607376	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14610334	14610336	+	Intron	DEL	GGG	-	-	rs10612412		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14709796	14709796	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM10A4	145165	broad.mit.edu	37	13	50746325	50746325	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A2	10827	broad.mit.edu	37	5	153405995	153405995	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A2	10827	broad.mit.edu	37	5	153413765	153413765	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A2	10827	broad.mit.edu	37	5	153414481	153414481	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM117A	81558	broad.mit.edu	37	17	47797089	47797089	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120B	84498	broad.mit.edu	37	6	170686388	170686388	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131520623	131520623	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM124B	79843	broad.mit.edu	37	2	225257526	225257527	+	Intron	DEL	TA	-	-	rs145671425		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139158024	139158024	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139183308	139183308	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139255306	139255306	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139484990	139484990	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153A	285596	broad.mit.edu	37	5	177164146	177164146	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM154A	158297	broad.mit.edu	37	9	19027263	19027263	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM155A	728215	broad.mit.edu	37	13	108099407	108099407	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM155A	728215	broad.mit.edu	37	13	108105734	108105734	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM155A	728215	broad.mit.edu	37	13	108261149	108261149	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160A1	729830	broad.mit.edu	37	4	152389987	152389987	+	Intron	DEL	T	-	-	rs35400259		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74178344	74178344	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM170A	340069	broad.mit.edu	37	5	118968652	118968652	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM170A	340069	broad.mit.edu	37	5	118969680	118969680	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM170A	340069	broad.mit.edu	37	5	118970330	118970330	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM176A	84141	broad.mit.edu	37	2	75746805	75746805	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM178B	51252	broad.mit.edu	37	2	97631994	97631994	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179A	165186	broad.mit.edu	37	2	29240240	29240240	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45475266	45475266	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45489148	45489148	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45542447	45542447	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM182B	728882	broad.mit.edu	37	20	25744942	25744942	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM184A	79632	broad.mit.edu	37	6	119327527	119327527	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM18A	780776	broad.mit.edu	37	16	10867350	10867350	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190A	401145	broad.mit.edu	37	4	91620617	91620617	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM194B	220081	broad.mit.edu	37	13	46170559	46170559	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A1	407738	broad.mit.edu	37	3	68055822	68055822	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A1	407738	broad.mit.edu	37	3	68486335	68486335	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62273285	62273285	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62522432	62522433	+	Intron	DNP	GG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM20B	9917	broad.mit.edu	37	1	179019583	179019583	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM21C	253725	broad.mit.edu	37	10	46250568	46250568	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM22F	54754	broad.mit.edu	37	9	97084624	97084624	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM22F	54754	broad.mit.edu	37	9	97087698	97087698	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM22F	54754	broad.mit.edu	37	9	97088023	97088023	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3B	54097	broad.mit.edu	37	21	42720533	42720533	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40A	85369	broad.mit.edu	37	1	110594571	110594571	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM45A	404636	broad.mit.edu	37	10	120895934	120895934	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37029517	37029517	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM59A	64762	broad.mit.edu	37	18	29972987	29972987	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177226607	177226607	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177245670	177245671	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177250527	177250527	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177251282	177251282	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190250606	190250606	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65B	9750	broad.mit.edu	37	6	24848321	24848321	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12357611	12357611	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156589529	156589529	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71D	161142	broad.mit.edu	37	14	67666466	67666466	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM74A3	728495	broad.mit.edu	37	9	40716228	40716228	+	RNA	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A5	727905	broad.mit.edu	37	9	65507706	65507706	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43625222	43625222	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43630319	43630319	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43630541	43630541	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75C1	441452	broad.mit.edu	37	9	90535243	90535243	+	Silent	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166039936	166039936	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166063260	166063260	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM7A3	89837	broad.mit.edu	37	15	30393025	30393025	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54791410	54791410	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54804952	54804952	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83C	128876	broad.mit.edu	37	20	33874655	33874655	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83C	128876	broad.mit.edu	37	20	33874994	33874995	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83C	128876	broad.mit.edu	37	20	33875651	33875651	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83F	113828	broad.mit.edu	37	22	40417319	40417319	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM86D	692099	broad.mit.edu	37	3	75476998	75476998	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM90A1	55138	broad.mit.edu	37	12	8374535	8374535	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM91A1	157769	broad.mit.edu	37	8	124798622	124798622	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM91A1	157769	broad.mit.edu	37	8	124820580	124820580	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98A	25940	broad.mit.edu	37	2	33810805	33810805	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98B	283742	broad.mit.edu	37	15	38751104	38751104	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9C	171484	broad.mit.edu	37	X	13057814	13057814	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9C	171484	broad.mit.edu	37	X	13061982	13061982	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCE	2178	broad.mit.edu	37	6	35423757	35423757	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCG	2189	broad.mit.edu	37	9	35076537	35076537	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCI	55215	broad.mit.edu	37	15	89828253	89828253	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	98829544	98829544	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	99042189	99042189	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARSB	10056	broad.mit.edu	37	2	223511493	223511493	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASLG	356	broad.mit.edu	37	1	172629278	172629278	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD2	22868	broad.mit.edu	37	2	207636110	207636110	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAS	355	broad.mit.edu	37	10	90774097	90774097	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187521300	187521300	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187522509	187522509	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187540974	187540974	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187541170	187541170	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187630266	187630266	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150931214	150931214	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150934205	150934205	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150942866	150942866	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92085369	92085369	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92088162	92088162	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92569898	92569898	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92616192	92616192	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92616245	92616245	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126370776	126370776	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127610317	127610317	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127610515	127610515	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127614200	127614200	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127623237	127623237	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127625045	127625045	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127625533	127625533	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127626604	127626604	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127647128	127647128	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127666391	127666391	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127667057	127667057	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127668325	127668325	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127693085	127693085	+	Missense_Mutation	SNP	T	A	A	rs148598779		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127744489	127744489	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127762076	127762076	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBRS	64319	broad.mit.edu	37	16	30679659	30679660	+	Intron	INS	-	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL17	64839	broad.mit.edu	37	5	107276234	107276234	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL18	80028	broad.mit.edu	37	7	5540452	5540452	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL20	84961	broad.mit.edu	37	17	37424976	37424976	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15770952	15770952	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15802370	15802370	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928113	15928113	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO15	201456	broad.mit.edu	37	18	71741089	71741089	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO24	26261	broad.mit.edu	37	7	100187837	100187837	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO8	26269	broad.mit.edu	37	4	175180957	175180957	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW12	285231	broad.mit.edu	37	3	48423302	48423302	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW2	26190	broad.mit.edu	37	9	123550109	123550109	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAMR	83953	broad.mit.edu	37	1	207132924	207132924	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2A	2212	broad.mit.edu	37	1	161480037	161480037	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2A	2212	broad.mit.edu	37	1	161482583	161482583	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2B	2213	broad.mit.edu	37	1	161643419	161643419	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2B	2213	broad.mit.edu	37	1	161647029	161647029	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2C	9103	broad.mit.edu	37	1	161563211	161563211	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157771714	157771714	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157771895	157771895	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157773983	157773983	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157776892	157776892	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157790843	157790843	+	5'Flank	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157665371	157665371	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157548295	157548295	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157558827	157558827	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157559356	157559356	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157567789	157567789	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157485384	157485384	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157497566	157497566	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157508979	157508979	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL6	343413	broad.mit.edu	37	1	159776626	159776626	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL6	343413	broad.mit.edu	37	1	159779402	159779402	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FDX1	2230	broad.mit.edu	37	11	110327530	110327530	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125130990	125130990	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERD3L	222894	broad.mit.edu	37	7	19184523	19184523	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERD3L	222894	broad.mit.edu	37	7	19187255	19187255	+	5'Flank	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108290505	108290505	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108521754	108521754	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZF1	389549	broad.mit.edu	37	7	121944462	121944462	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZF2	55079	broad.mit.edu	37	3	62356085	62356085	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155505620	155505620	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155506864	155506864	+	Missense_Mutation	SNP	G	T	T	rs121909613		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD1	2245	broad.mit.edu	37	X	54476880	54476880	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD2	221472	broad.mit.edu	37	6	36975291	36975291	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD3	89846	broad.mit.edu	37	9	95795119	95795119	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14939190	14939190	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF10	2255	broad.mit.edu	37	5	44388436	44388436	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	138193047	138193047	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102430526	102430526	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102654895	102654895	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102818770	102818770	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102979028	102979028	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF18	8817	broad.mit.edu	37	5	170867409	170867409	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF19	9965	broad.mit.edu	37	11	69514322	69514322	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGG	2266	broad.mit.edu	37	4	155531210	155531210	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGR	2268	broad.mit.edu	37	1	27950358	27950358	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHAD1	114827	broad.mit.edu	37	1	15686990	15686990	+	Missense_Mutation	SNP	G	T	T	rs137894128	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	59904389	59904389	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	59936065	59936065	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	60067636	60067637	+	Intron	INS	-	T	T	rs111658268		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	33964878	33964878	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34103106	34103106	+	Intron	DEL	A	-	-	rs35453592		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FH	2271	broad.mit.edu	37	1	241667228	241667228	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FH	2271	broad.mit.edu	37	1	241672065	241672065	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FH	2271	broad.mit.edu	37	1	241677012	241677012	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIGN	55137	broad.mit.edu	37	2	164466057	164466057	+	3'UTR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIGN	55137	broad.mit.edu	37	2	164466754	164466754	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1	27145	broad.mit.edu	37	6	76124487	76124487	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72743543	72743543	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55755555	55755555	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55766954	55766954	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBPL	63943	broad.mit.edu	37	6	32096983	32096983	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKSG73	440888	broad.mit.edu	37	2	92129177	92129177	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152323416	152323416	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152323426	152323426	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152324583	152324583	+	Silent	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152277200	152277200	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152281913	152281913	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152284537	152284537	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152285069	152285069	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ10357	55701	broad.mit.edu	37	14	21546993	21546993	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ12825	440101	broad.mit.edu	37	12	54478755	54478755	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ22536	401237	broad.mit.edu	37	6	21980950	21980950	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ26850	400710	broad.mit.edu	37	19	50563045	50563045	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ35024	401491	broad.mit.edu	37	9	2435599	2435599	+	Intron	DEL	G	-	-	rs112400843		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ35024	401491	broad.mit.edu	37	9	2599038	2599039	+	Intron	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ36000	284124	broad.mit.edu	37	17	21904256	21904256	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ37543	285668	broad.mit.edu	37	5	60972376	60972376	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ39653	202020	broad.mit.edu	37	4	16240078	16240078	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43950	347127	broad.mit.edu	37	9	84534615	84534615	+	3'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ44082	389762	broad.mit.edu	37	9	84564667	84564667	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ45340	402483	broad.mit.edu	37	7	128297801	128297801	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84603914	84603914	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84607853	84607853	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58154424	58154424	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128477410	128477410	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128481269	128481269	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128488457	128488457	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128497047	128497047	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLRT2	23768	broad.mit.edu	37	14	86088361	86088361	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28874755	28874755	+	3'UTR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29004175	29004175	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28601168	28601168	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLVCR1	28982	broad.mit.edu	37	1	213032578	213032578	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN1	342184	broad.mit.edu	37	15	33170755	33170755	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN1	342184	broad.mit.edu	37	15	33243669	33243669	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240256720	240256720	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240256813	240256813	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240286662	240286662	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240307735	240307735	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240308566	240308566	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240333725	240333725	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240334034	240334034	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240421379	240421379	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240439804	240439804	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240455908	240455909	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240555895	240555895	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL2	114793	broad.mit.edu	37	2	153415247	153415248	+	Intron	INS	-	T	T	rs70974869		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMOD	2331	broad.mit.edu	37	1	203225406	203225406	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMOD	2331	broad.mit.edu	37	1	203226165	203226165	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMOD	2331	broad.mit.edu	37	1	203270626	203270626	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1	2332	broad.mit.edu	37	X	147024765	147024765	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNBP4	23360	broad.mit.edu	37	11	47774472	47774472	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159642550	159642550	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159647539	159647546	+	Frame_Shift_Del	DEL	GCCAGTCA	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159652896	159652896	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172052793	172052793	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172061757	172061757	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89403576	89403576	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89407164	89407164	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49207376	49207376	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLR2	2350	broad.mit.edu	37	11	71927858	71927858	+	5'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLR4	390243	broad.mit.edu	37	11	94036135	94036135	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOSL1	8061	broad.mit.edu	37	11	65664377	65664377	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXA1	3169	broad.mit.edu	37	14	38064152	38064152	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXB1	27023	broad.mit.edu	37	15	60297527	60297527	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXD4	2298	broad.mit.edu	37	9	116941	116941	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXF1	2294	broad.mit.edu	37	16	86546403	86546403	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237250	29237250	+	Missense_Mutation	SNP	G	T	T	rs121913678		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237821	29237821	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237837	29237837	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXJ2	55810	broad.mit.edu	37	12	8196499	8196499	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN3	1112	broad.mit.edu	37	14	90027283	90027283	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP1	27086	broad.mit.edu	37	3	71090457	71090457	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114019590	114019590	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114268649	114268649	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114298122	114298122	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114299793	114299793	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXRED1	55572	broad.mit.edu	37	11	126143046	126143046	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXS1	2307	broad.mit.edu	37	20	30432902	30432902	+	Silent	SNP	G	T	T	rs142730499	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR3	2359	broad.mit.edu	37	19	52327466	52327466	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79265727	79265728	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79284775	79284775	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79308821	79308821	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14747130	14747130	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14775956	14775956	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14812570	14812570	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14842201	14842201	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14851810	14851810	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14859441	14859441	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39453257	39453257	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29612375	29612375	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29633919	29633919	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29650176	29650176	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29650451	29650451	+	Intron	SNP	G	T	T	rs147250969		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29650462	29650462	+	Intron	SNP	A	T	T	rs8116385		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29651592	29651592	+	Intron	SNP	G	A	A	rs139841687		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29651596	29651596	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29652018	29652018	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29652250	29652250	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG2B	441581	broad.mit.edu	37	10	135439016	135439016	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG2B	441581	broad.mit.edu	37	10	135440180	135440180	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13789644	13789644	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13994464	13994464	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4B	23150	broad.mit.edu	37	3	69225773	69225773	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37691897	37691897	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37692668	37692668	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12738731	12738731	+	3'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48569380	48569380	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32761879	32761879	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32811610	32811610	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32818135	32818135	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRZB	2487	broad.mit.edu	37	2	183699583	183699583	+	Missense_Mutation	SNP	C	A	A	rs138459633	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49191198	49191198	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49230941	49230941	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49381388	49381388	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49381662	49381662	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ3	117246	broad.mit.edu	37	17	61897779	61897779	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUBP3	8939	broad.mit.edu	37	9	133505897	133505897	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUK	197258	broad.mit.edu	37	16	70499966	70499966	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FURIN	5045	broad.mit.edu	37	15	91419749	91419749	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT6	2528	broad.mit.edu	37	19	5831811	5831811	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT6	2528	broad.mit.edu	37	19	5832192	5832192	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT9	10690	broad.mit.edu	37	6	96651472	96651472	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD5	53827	broad.mit.edu	37	19	35657248	35657248	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39135002	39135002	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39170245	39170245	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39217454	39217454	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYCO1	79443	broad.mit.edu	37	3	46010302	46010302	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYN	2534	broad.mit.edu	37	6	112185764	112185765	+	Intron	INS	-	GAT	GAT	rs139971631	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD4	8322	broad.mit.edu	37	11	86662048	86662048	+	3'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD9	8326	broad.mit.edu	37	7	72850102	72850102	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29541493	29541493	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29599210	29599210	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101056158	101056158	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101156562	101156562	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101216083	101216083	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101377071	101377071	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161302486	161302486	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161302770	161302770	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161317894	161317894	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151535868	151535868	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47163106	47163106	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47405654	47405654	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB2	2561	broad.mit.edu	37	5	160721512	160721512	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26793083	26793083	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26866646	26866647	+	Missense_Mutation	DNP	CC	GA	GA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	27182192	27182192	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151127947	151127947	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46043136	46043136	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46043281	46043281	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46066476	46066476	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27254228	27254228	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27357101	27357102	+	Intron	DEL	AC	-	-	rs142228451		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27597265	27597265	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27598293	27598293	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151821226	151821226	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26512780	26512780	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26538675	26538675	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30819812	30819812	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30901552	30901552	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30903340	30903340	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE12J	729396	broad.mit.edu	37	X	49217133	49217133	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAK	2580	broad.mit.edu	37	4	898359	898359	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST4	79690	broad.mit.edu	37	7	99758406	99758406	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88322889	88322889	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88324840	88324840	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALK2	2585	broad.mit.edu	37	15	49574349	49574349	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT12	79695	broad.mit.edu	37	9	101599541	101599541	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	154801186	154801186	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155069229	155069229	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155143671	155143671	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155157959	155157959	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155295170	155295170	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT2	2590	broad.mit.edu	37	1	230339028	230339028	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT2	2590	broad.mit.edu	37	1	230378907	230378907	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT2	2590	broad.mit.edu	37	1	230379072	230379073	+	Frame_Shift_Ins	INS	-	G	G	rs139591495		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT3	2591	broad.mit.edu	37	2	166606373	166606373	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL1	57452	broad.mit.edu	37	14	69813668	69813668	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11308040	11308040	+	Intron	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11362513	11362513	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11362515	11362515	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11521277	11521277	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11643002	11643002	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL5	168391	broad.mit.edu	37	7	151700101	151700101	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	172735867	172735867	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	172824434	172824434	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAP43	2596	broad.mit.edu	37	3	115395142	115395143	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L2	246176	broad.mit.edu	37	17	34072633	34072633	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2	2620	broad.mit.edu	37	11	22747641	22747641	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9885213	9885213	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA2	2624	broad.mit.edu	37	3	128200750	128200750	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA3	2625	broad.mit.edu	37	10	8100536	8100536	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA4	2626	broad.mit.edu	37	8	11607661	11607661	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153782423	153782423	+	3'UTR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22699054	22699055	+	Intron	DEL	TG	-	-	rs73108302	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22729009	22729009	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA	2629	broad.mit.edu	37	1	155205824	155205824	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBE1	2632	broad.mit.edu	37	3	81539467	81539467	+	3'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBE1	2632	broad.mit.edu	37	3	81720077	81720077	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP2	2634	broad.mit.edu	37	1	89579665	89579665	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89729611	89729611	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP6	163351	broad.mit.edu	37	1	89834038	89834038	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP7	388646	broad.mit.edu	37	1	89637451	89637451	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCAT	23464	broad.mit.edu	37	22	38211699	38211699	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCH1	2643	broad.mit.edu	37	14	55310842	55310842	+	Missense_Mutation	SNP	G	C	C	rs41298440		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44192957	44192957	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT4	51301	broad.mit.edu	37	5	74325437	74325437	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74845920	74845920	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74856030	74856030	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74862468	74862468	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF15	9518	broad.mit.edu	37	19	18497006	18497006	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD4	220032	broad.mit.edu	37	11	76969651	76969651	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD4	220032	broad.mit.edu	37	11	76979888	76979888	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEFT	115557	broad.mit.edu	37	12	58010136	58010136	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFI1B	8328	broad.mit.edu	37	9	135862731	135862731	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55206145	55206145	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55264237	55264237	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGA2	23062	broad.mit.edu	37	16	23504791	23504791	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGH	8836	broad.mit.edu	37	8	63948275	63948275	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGN	199720	broad.mit.edu	37	19	38877024	38877024	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT1	2678	broad.mit.edu	37	22	25010652	25010652	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT8P	645367	broad.mit.edu	37	2	91968922	91968922	+	RNA	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61958341	61958341	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61958487	61958487	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHRHR	2692	broad.mit.edu	37	7	31013563	31013563	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHRHR	2692	broad.mit.edu	37	7	31014725	31014725	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHRHR	2692	broad.mit.edu	37	7	31015438	31015438	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42699437	42699438	+	Intron	INS	-	TCTT	TCTT	rs142537774	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP1	170575	broad.mit.edu	37	7	150417295	150417295	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP2	26157	broad.mit.edu	37	7	150389579	150389579	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP2	26157	broad.mit.edu	37	7	150389661	150389661	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA10	84694	broad.mit.edu	37	6	90605020	90605020	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA1	2697	broad.mit.edu	37	6	121768887	121768887	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA8	2703	broad.mit.edu	37	1	147380481	147380481	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB7	375519	broad.mit.edu	37	6	88009055	88009055	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJC1	10052	broad.mit.edu	37	17	42883060	42883060	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L	79411	broad.mit.edu	37	2	220108126	220108126	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6609620	6609620	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6639509	6639509	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42065784	42065784	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42224356	42224356	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42262847	42262847	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS1	148979	broad.mit.edu	37	1	54132520	54132520	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS3	169792	broad.mit.edu	37	9	3829224	3829224	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS3	169792	broad.mit.edu	37	9	3937124	3937124	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLMN	11146	broad.mit.edu	37	1	92712518	92712518	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP1R	2740	broad.mit.edu	37	6	39041341	39041341	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151230872	151230872	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151271938	151271938	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA3	8001	broad.mit.edu	37	4	175688065	175688065	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA3	8001	broad.mit.edu	37	4	175750002	175750002	+	5'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D2	23127	broad.mit.edu	37	1	183909826	183909826	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58602367	58602367	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58607118	58607118	+	5'UTR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GM2A	2760	broad.mit.edu	37	5	150632942	150632942	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GM2A	2760	broad.mit.edu	37	5	150760219	150760219	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GM2A	2760	broad.mit.edu	37	5	150760836	150760836	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB1	10691	broad.mit.edu	37	1	29018056	29018056	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB2	26205	broad.mit.edu	37	20	62224195	62224195	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMFG	9535	broad.mit.edu	37	19	39825865	39825865	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57474928	57474928	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG2	54331	broad.mit.edu	37	14	52418705	52418705	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG4	2786	broad.mit.edu	37	1	235806052	235806052	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG7	2788	broad.mit.edu	37	19	2560117	2560117	+	Intron	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA5	9950	broad.mit.edu	37	14	93263812	93263812	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA5	9950	broad.mit.edu	37	14	93264439	93264439	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA5	9950	broad.mit.edu	37	14	93299644	93299644	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA5	9950	broad.mit.edu	37	14	93305735	93305735	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6C	653641	broad.mit.edu	37	15	75562399	75562399	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6L1	283767	broad.mit.edu	37	15	22742289	22742289	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLM1	51280	broad.mit.edu	37	9	88677396	88677396	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155726844	155726844	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155783541	155783541	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT1	2805	broad.mit.edu	37	10	101163821	101163821	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20335513	20335513	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP6	51206	broad.mit.edu	37	19	55526377	55526377	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167024494	167024494	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167058135	167058135	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167059341	167059341	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH8	23131	broad.mit.edu	37	17	42512405	42512405	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92216116	92216117	+	Intron	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92345499	92345499	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92346038	92346038	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92408470	92408470	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92482344	92482344	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	92635597	92635598	+	Intron	INS	-	A	A	rs138322966	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	93419881	93419881	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	93518665	93518665	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPI	2821	broad.mit.edu	37	19	34868636	34868636	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176572897	176572897	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135428676	135428676	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR114	221188	broad.mit.edu	37	16	57596926	57596927	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46845899	46845899	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR119	139760	broad.mit.edu	37	X	129519479	129519479	+	5'Flank	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100330087	100330088	+	Intron	INS	-	TTTCCTTC	TTTCCTTC	rs71981038		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100365350	100365350	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100388072	100388072	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR12	2835	broad.mit.edu	37	13	27332968	27332968	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131476638	131476638	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131500254	131500254	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154070676	154070676	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25465275	25465275	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25770300	25770300	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR162	27239	broad.mit.edu	37	12	6936304	6936304	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR18	2841	broad.mit.edu	37	13	99907330	99907330	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR26	2849	broad.mit.edu	37	10	125454055	125454057	+	3'UTR	DEL	AAT	-	-	rs146175786		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR26	2849	broad.mit.edu	37	10	125454196	125454196	+	3'UTR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR27	2850	broad.mit.edu	37	3	71804187	71804187	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR32	2854	broad.mit.edu	37	19	51274757	51274757	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR37	2861	broad.mit.edu	37	7	124386859	124386859	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR3	2827	broad.mit.edu	37	1	27721339	27721339	+	3'UTR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR52	9293	broad.mit.edu	37	1	174417408	174417408	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR64	10149	broad.mit.edu	37	X	19027766	19027766	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR65	8477	broad.mit.edu	37	14	88478017	88478017	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR6	2830	broad.mit.edu	37	6	110300597	110300597	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR75	10936	broad.mit.edu	37	2	54081076	54081076	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR85	54329	broad.mit.edu	37	7	112724050	112724050	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR97	222487	broad.mit.edu	37	16	57714563	57714563	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89953810	89953810	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90020682	90020682	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90055423	90055423	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90327058	90327058	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP2	114928	broad.mit.edu	37	X	101972045	101972045	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117127867	117127867	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRIN1	114787	broad.mit.edu	37	5	176026278	176026278	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123464956	123464956	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123475956	123475956	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123477487	123477487	+	Silent	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123485468	123485468	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123489193	123489193	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD3	65983	broad.mit.edu	37	5	125824489	125824489	+	Splice_Site	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD4	23151	broad.mit.edu	37	22	47054064	47054065	+	Intron	DNP	GG	CT	CT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD4	23151	broad.mit.edu	37	22	47069562	47069562	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11736370	11736370	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL1	29841	broad.mit.edu	37	2	10101601	10101601	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHPR	9380	broad.mit.edu	37	9	37432265	37432265	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	152873380	152873380	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153054124	153054124	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153174303	153174303	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122488701	122488701	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105624095	105624095	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105836837	105836837	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87614385	87614385	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87676222	87676222	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87952561	87952561	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	88084362	88084362	+	Intron	DEL	C	-	-	rs74888721		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94344129	94344129	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94376904	94376904	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30959695	30959695	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	31204399	31204399	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102134198	102134198	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102180895	102180895	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102247694	102247694	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102250160	102250160	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120461157	120461157	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120591451	120591451	+	Intron	SNP	T	A	A	rs118046113	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120648759	120648759	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120685645	120685645	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120690225	120690225	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120827420	120827420	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120831681	120831681	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2D	2906	broad.mit.edu	37	19	48922324	48922324	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66800025	66800025	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK4	2868	broad.mit.edu	37	4	3029698	3029698	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK7	131890	broad.mit.edu	37	3	141497196	141497196	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK7	131890	broad.mit.edu	37	3	141521680	141521680	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146480564	146480564	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720932	146720933	+	Intron	DNP	CT	TA	TA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM2	2912	broad.mit.edu	37	3	51749542	51749542	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34003480	34003480	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34026759	34026759	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34029639	34029639	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34066173	34066173	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34100732	34100732	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34100864	34100864	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88386205	88386205	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88386306	88386306	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88582965	88582965	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	6903105	6903105	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7333097	7333097	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7340143	7340143	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7340551	7340551	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7620674	7620674	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7782002	7782002	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126086472	126086472	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126141604	126141604	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126303192	126303192	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126358582	126358582	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126539893	126539893	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRN	2896	broad.mit.edu	37	17	42429341	42429341	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRPR	2925	broad.mit.edu	37	X	16141979	16141979	+	5'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMA	284110	broad.mit.edu	37	17	38126822	38126822	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMA	284110	broad.mit.edu	37	17	38127456	38127456	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27839073	27839073	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	28064809	28064809	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG2	83903	broad.mit.edu	37	17	3627904	3627904	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA1	2938	broad.mit.edu	37	6	52660976	52660976	+	Intron	SNP	G	T	T	rs9367496	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA2	2939	broad.mit.edu	37	6	52616080	52616081	+	Intron	DNP	GG	CT	CT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA5	221357	broad.mit.edu	37	6	52713628	52713628	+	5'Flank	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM3	2947	broad.mit.edu	37	1	110282970	110282970	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2I	2969	broad.mit.edu	37	7	74113371	74113371	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP4	23560	broad.mit.edu	37	10	1055727	1055727	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1C	9626	broad.mit.edu	37	3	108672644	108672644	+	5'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA2B	2981	broad.mit.edu	37	1	42620422	42620422	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106766303	106766303	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108673499	108673499	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBL1	387036	broad.mit.edu	37	6	26866971	26866971	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBL2	375513	broad.mit.edu	37	6	58246233	58246233	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBL2	375513	broad.mit.edu	37	6	58287488	58287488	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21491676	21491676	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21534245	21534246	+	Intron	INS	-	TG	TG	rs143137704		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21552138	21552138	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYG1	2992	broad.mit.edu	37	3	148734347	148734347	+	Intron	SNP	G	T	T	rs116035671	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	144937399	144937399	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	145041018	145041018	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPE	2996	broad.mit.edu	37	4	144801812	144801812	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H1FNT	341567	broad.mit.edu	37	12	48723814	48723814	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H6PD	9563	broad.mit.edu	37	1	9305652	9305652	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HACE1	57531	broad.mit.edu	37	6	105239240	105239240	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAP1	9001	broad.mit.edu	37	17	39883692	39883692	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN4	404037	broad.mit.edu	37	19	19371794	19371794	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS1	3036	broad.mit.edu	37	19	52222630	52222630	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122626320	122626320	+	3'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS5	23354	broad.mit.edu	37	19	36108873	36108873	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS6	54801	broad.mit.edu	37	9	19080548	19080548	+	Silent	SNP	C	A	A	rs139689694	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBD	3045	broad.mit.edu	37	11	5254350	5254350	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBG2	3048	broad.mit.edu	37	11	5284955	5284955	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153224764	153224764	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCG27	253018	broad.mit.edu	37	6	31170701	31170701	+	RNA	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCK	3055	broad.mit.edu	37	20	30662476	30662476	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCK	3055	broad.mit.edu	37	20	30689371	30689371	+	3'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45351989	45351989	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45353535	45353535	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45472642	45472642	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55081104	55081104	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55113465	55113465	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC5	10014	broad.mit.edu	37	17	42194944	42194944	+	5'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48676754	48676754	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18466985	18466985	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18669096	18669096	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18747935	18747935	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	19035744	19035744	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	19035812	19035812	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGF	3068	broad.mit.edu	37	1	156715008	156715008	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDX	139324	broad.mit.edu	37	X	83599427	83599427	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236719125	236719125	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR3	55027	broad.mit.edu	37	16	50128684	50128684	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37280662	37280662	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58150535	58150535	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41009274	41009274	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41033262	41033262	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41048301	41048301	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41056060	41056060	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41064816	41064816	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41064821	41064821	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41065357	41065357	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41071092	41071095	+	5'UTR	DEL	CTTG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43484518	43484518	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43594353	43594353	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197208539	197208539	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197297907	197297907	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124770954	124770954	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELZ	9931	broad.mit.edu	37	17	65162584	65162584	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93803634	93803634	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93806538	93806538	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93808322	93808322	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65486408	65486408	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63970559	63970559	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	64067665	64067665	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28457364	28457364	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28520107	28520107	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERPUD1	9709	broad.mit.edu	37	16	56976829	56976829	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXIM2	124790	broad.mit.edu	37	17	43246830	43246830	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEY2	23493	broad.mit.edu	37	6	126080920	126080920	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFE2	148738	broad.mit.edu	37	1	145416854	145416854	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91740190	91740190	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91843849	91843849	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81388208	81388208	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHAT	55733	broad.mit.edu	37	1	210522132	210522132	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHAT	55733	broad.mit.edu	37	1	210811209	210811210	+	Intron	INS	-	AAG	AAG	rs145354854		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100123115	100123118	+	Intron	DEL	AAAG	-	-	rs35577018		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222711642	222711642	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHLA1	10086	broad.mit.edu	37	8	133088854	133088854	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHLA2	11148	broad.mit.edu	37	3	108076997	108076997	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHLA3	11147	broad.mit.edu	37	1	70820956	70820956	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIBCH	26275	broad.mit.edu	37	2	191155147	191155147	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HINFP	25988	broad.mit.edu	37	11	119002426	119002426	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HINFP	25988	broad.mit.edu	37	11	119003699	119003699	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AC	8334	broad.mit.edu	37	6	26124324	26124324	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BJ	8970	broad.mit.edu	37	6	27100573	27100573	+	Translation_Start_Site	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3A	8350	broad.mit.edu	37	6	26020720	26020720	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3B	8358	broad.mit.edu	37	6	26031923	26031923	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3I	8354	broad.mit.edu	37	6	27840163	27840163	+	5'Flank	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP1	3096	broad.mit.edu	37	6	12120865	12120865	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143091672	143091672	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	42048561	42048561	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-B	3106	broad.mit.edu	37	6	31324088	31324088	+	Missense_Mutation	SNP	C	A	A	rs41540612		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-C	3107	broad.mit.edu	37	6	31238994	31238994	+	Missense_Mutation	SNP	C	A	A	rs41562518		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DQB2	3120	broad.mit.edu	37	6	32729721	32729721	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-L	3139	broad.mit.edu	37	6	30231185	30231185	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLX	3142	broad.mit.edu	37	1	221058127	221058127	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185833509	185833509	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185931768	185931768	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185933167	185933167	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186050512	186050512	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186105679	186105679	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCL	3155	broad.mit.edu	37	1	24133727	24133728	+	Intron	DNP	GC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS1	3157	broad.mit.edu	37	5	43298041	43298041	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173496091	173496091	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173531368	173531368	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43057955	43057955	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43058003	43058003	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA1	3178	broad.mit.edu	37	12	54676198	54676198	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPAB	3182	broad.mit.edu	37	5	177633023	177633023	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPK	3190	broad.mit.edu	37	9	86584513	86584513	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPM	4670	broad.mit.edu	37	19	8551153	8551153	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOMER3	9454	broad.mit.edu	37	19	19030220	19030220	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOMEZ	57594	broad.mit.edu	37	14	23746319	23746319	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA2	3199	broad.mit.edu	37	7	27141938	27141938	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA3	3200	broad.mit.edu	37	7	27149695	27149695	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA6	3203	broad.mit.edu	37	7	27187378	27187378	+	5'Flank	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB13	10481	broad.mit.edu	37	17	46804345	46804345	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB1	3211	broad.mit.edu	37	17	46607311	46607311	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46654478	46654478	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC4	3221	broad.mit.edu	37	12	54428018	54428018	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD3	3232	broad.mit.edu	37	2	177036370	177036370	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPR	3250	broad.mit.edu	37	16	72110641	72110641	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS1	3257	broad.mit.edu	37	10	100189543	100189543	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS5	11234	broad.mit.edu	37	11	18303329	18303329	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100249983	100249983	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100807966	100807966	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPX	3263	broad.mit.edu	37	11	6453096	6453096	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HP	3240	broad.mit.edu	37	16	72092984	72092984	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186394883	186394883	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH2	3274	broad.mit.edu	37	5	175111181	175111181	+	Silent	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152192919	152192919	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HR	55806	broad.mit.edu	37	8	21977319	21977319	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS2ST1	9653	broad.mit.edu	37	1	87538983	87538983	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST3A1	9955	broad.mit.edu	37	17	13399540	13399540	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25867911	25867911	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25908539	25908539	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	96884614	96884614	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	96887614	96887614	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	97132181	97132181	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	97152062	97152062	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	97226003	97226003	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	97343878	97343882	+	Intron	DEL	CTTCC	-	-	rs71658960		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD11B1	3290	broad.mit.edu	37	1	209879155	209879155	+	Splice_Site	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B12	51144	broad.mit.edu	37	11	43772523	43772523	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B12	51144	broad.mit.edu	37	11	43876831	43876831	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B14	51171	broad.mit.edu	37	19	49335861	49335861	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B4	3295	broad.mit.edu	37	5	118811495	118811495	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B7P2	158160	broad.mit.edu	37	10	38657862	38657862	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119976456	119976456	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSF2BP	11077	broad.mit.edu	37	21	45033781	45033781	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSF2	3298	broad.mit.edu	37	6	122720843	122720843	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSF5	124535	broad.mit.edu	37	17	56565664	56565664	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSH2D	84941	broad.mit.edu	37	19	16263858	16263858	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AB2P	391634	broad.mit.edu	37	4	13338206	13338206	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118525649	118525649	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA6	3310	broad.mit.edu	37	1	161496391	161496391	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPD1	3329	broad.mit.edu	37	2	198358977	198358977	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135582721	135582721	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135593311	135593311	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1B	3351	broad.mit.edu	37	6	78172293	78172293	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1E	3354	broad.mit.edu	37	6	87725089	87725089	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3B	9177	broad.mit.edu	37	11	113775602	113775602	+	5'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3E	285242	broad.mit.edu	37	3	183822695	183822695	+	Silent	SNP	C	T	T	rs145422207		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR4	3360	broad.mit.edu	37	5	147929925	147929925	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA1	5654	broad.mit.edu	37	10	124249229	124249229	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3142400	3142400	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3174833	3174833	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3182195	3182195	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HVCN1	84329	broad.mit.edu	37	12	111099189	111099189	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL2	8692	broad.mit.edu	37	3	50357134	50357134	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL4	23553	broad.mit.edu	37	7	123517226	123517226	+	3'UTR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70942679	70942679	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71054035	71054035	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICAM2	3384	broad.mit.edu	37	17	62081157	62081157	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICOS	29851	broad.mit.edu	37	2	204801541	204801541	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICOS	29851	broad.mit.edu	37	2	204820722	204820722	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH3A	3419	broad.mit.edu	37	15	78461200	78461200	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDI2	91734	broad.mit.edu	37	10	1068748	1068748	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI27L1	122509	broad.mit.edu	37	14	94567914	94567914	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFLTD1	160492	broad.mit.edu	37	12	25679653	25679653	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA7	3444	broad.mit.edu	37	9	21202191	21202191	+	5'UTR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNG	3458	broad.mit.edu	37	12	68553297	68553297	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129226688	129226688	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129233292	129233292	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT46	56912	broad.mit.edu	37	11	118428453	118428453	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT52	51098	broad.mit.edu	37	20	42232298	42232298	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT74	80173	broad.mit.edu	37	9	26990194	26990194	+	Splice_Site	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT74	80173	broad.mit.edu	37	9	27055706	27055706	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT81	28981	broad.mit.edu	37	12	110655869	110655869	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC3	9543	broad.mit.edu	37	15	65623870	65623870	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99459972	99459972	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99491630	99491630	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1	3479	broad.mit.edu	37	12	102802887	102802887	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1	3479	broad.mit.edu	37	12	102809307	102809307	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP1	3484	broad.mit.edu	37	7	45928285	45928285	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP5	3488	broad.mit.edu	37	2	217543954	217543954	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP6	3489	broad.mit.edu	37	12	53494814	53494814	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP7	3490	broad.mit.edu	37	4	57939018	57939018	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGHMBP2	3508	broad.mit.edu	37	11	68703791	68703791	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151156432	151156432	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151163146	151163146	+	Silent	SNP	G	A	A	rs146031878		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118645243	118645243	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130407652	130407652	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130419516	130419516	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130543833	130543833	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18550288	18550288	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18554472	18554472	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18661368	18661368	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18688691	18688691	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF5	150084	broad.mit.edu	37	21	41137349	41137349	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9	57549	broad.mit.edu	37	1	159907436	159907436	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF1	10320	broad.mit.edu	37	7	50435967	50435967	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF1	10320	broad.mit.edu	37	7	50466154	50466154	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF1	10320	broad.mit.edu	37	7	50467526	50467526	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF1	10320	broad.mit.edu	37	7	50467763	50467763	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF3	22806	broad.mit.edu	37	17	37988523	37988523	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12B	3593	broad.mit.edu	37	5	158753577	158753577	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67794212	67794212	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81592114	81592114	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17F	112744	broad.mit.edu	37	6	52111473	52111473	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17RE	132014	broad.mit.edu	37	3	9945894	9945894	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18R1	8809	broad.mit.edu	37	2	102979293	102979293	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18RAP	8807	broad.mit.edu	37	2	103068670	103068670	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F7	27178	broad.mit.edu	37	2	113676202	113676202	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F8	27177	broad.mit.edu	37	2	113780347	113780347	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F8	27177	broad.mit.edu	37	2	113809382	113809382	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29686466	29686466	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAP	3556	broad.mit.edu	37	3	190326990	190326990	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAP	3556	broad.mit.edu	37	3	190345044	190345048	+	Intron	DEL	TTTTG	-	-	rs10538189		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RN	3557	broad.mit.edu	37	2	113875667	113875667	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27445835	27445835	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL24	11009	broad.mit.edu	37	1	207075497	207075497	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RA	3559	broad.mit.edu	37	10	6061223	6061223	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3137211	3137211	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166901278	166901278	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166925953	166925953	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILF2	3608	broad.mit.edu	37	1	153639859	153639860	+	Intron	INS	-	AG	AG	rs12096647	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMP2L	83943	broad.mit.edu	37	7	110303875	110303875	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMP2L	83943	broad.mit.edu	37	7	111051643	111051643	+	Intron	SNP	A	T	T	rs139249055	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76660737	76660737	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76713660	76713660	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62321803	62321803	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62545329	62545329	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING3	54556	broad.mit.edu	37	7	120607820	120607821	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING5	84289	broad.mit.edu	37	2	242662729	242662729	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHA	3623	broad.mit.edu	37	2	220439498	220439498	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41740049	41740049	+	5'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBE	83729	broad.mit.edu	37	12	57849344	57849344	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INMT	11185	broad.mit.edu	37	7	30768967	30768967	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	142955673	142955673	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143114191	143114191	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	234078641	234078641	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPPL1	3636	broad.mit.edu	37	11	71948208	71948209	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPPL1	3636	broad.mit.edu	37	11	71948775	71948775	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSL5	10022	broad.mit.edu	37	1	67264039	67264039	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSL5	10022	broad.mit.edu	37	1	67266977	67266977	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156815208	156815208	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS3	65123	broad.mit.edu	37	1	153743132	153743132	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS4	92105	broad.mit.edu	37	11	77635818	77635818	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS6	26512	broad.mit.edu	37	13	51957643	51957672	+	Intron	DEL	TTACATAAACCATTGATTCAATTCAGCTTT	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS8	55656	broad.mit.edu	37	8	95841374	95841374	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INVS	27130	broad.mit.edu	37	9	102888679	102888679	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPCEF1	26034	broad.mit.edu	37	6	154489289	154489289	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPMK	253430	broad.mit.edu	37	10	59956113	59956113	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO13	9670	broad.mit.edu	37	1	44425706	44425706	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO13	9670	broad.mit.edu	37	1	44425895	44425895	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO13	9670	broad.mit.edu	37	1	44432217	44432217	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO5	3843	broad.mit.edu	37	13	98666227	98666227	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO7	10527	broad.mit.edu	37	11	9435846	9435846	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCA1	79781	broad.mit.edu	37	2	237316809	237316809	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCB1	9657	broad.mit.edu	37	3	121491350	121491350	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCF3	401067	broad.mit.edu	37	3	51864588	51864588	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCK	124152	broad.mit.edu	37	16	19729520	19729520	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75923342	75923342	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75932931	75932931	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156506759	156506759	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156514801	156514801	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC3	440073	broad.mit.edu	37	12	208282	208282	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK1BP1	134728	broad.mit.edu	37	6	79607447	79607447	+	Intron	SNP	G	T	T	rs112867856		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK4	51135	broad.mit.edu	37	12	44180237	44180237	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF8	3394	broad.mit.edu	37	16	85954926	85954926	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX6	79190	broad.mit.edu	37	16	55359060	55359060	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50679556	50679556	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISLR2	57611	broad.mit.edu	37	15	74425025	74425025	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISLR	3671	broad.mit.edu	37	15	74467667	74467667	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITCH	83737	broad.mit.edu	37	20	33001510	33001510	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITFG1	81533	broad.mit.edu	37	16	47294485	47294486	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITFG2	55846	broad.mit.edu	37	12	2933173	2933173	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA10	8515	broad.mit.edu	37	1	145528566	145528566	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA10	8515	broad.mit.edu	37	1	145530815	145530815	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA10	8515	broad.mit.edu	37	1	145534101	145534101	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68606130	68606130	+	Missense_Mutation	SNP	C	A	A	rs141749560	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68620721	68620721	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68657189	68657189	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68695101	68695101	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52150063	52150063	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52216073	52216073	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42458450	42458450	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52347245	52347245	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182323104	182323104	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182323141	182323141	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182339614	182339614	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182388301	182388301	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54793518	54793518	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54805517	54805517	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15561210	15561210	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15614378	15614378	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15646154	15646154	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15725838	15725838	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA9	3680	broad.mit.edu	37	3	37659581	37659581	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31404754	31404754	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31422424	31422424	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31424696	31424696	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31435184	31435184	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30494999	30494999	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31288416	31288416	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187455108	187455108	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31372528	31372528	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31372909	31372909	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB1	3688	broad.mit.edu	37	10	33233908	33233908	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB2	3689	broad.mit.edu	37	21	46310029	46310029	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45361784	45361784	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45368617	45368617	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45380390	45380390	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102220220	102220220	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102235457	102235457	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102357657	102357658	+	Intron	INS	-	AC	AC	rs112395725		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102367884	102367884	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52811905	52811905	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52812174	52812174	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52812236	52812236	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7745435	7745435	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7772360	7772360	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54780086	54780086	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54817493	54817493	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7614297	7614297	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7618494	7618494	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7628109	7628110	+	Intron	DEL	CG	-	-	rs3841465		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156667246	156667246	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITLN2	142683	broad.mit.edu	37	1	160920575	160920575	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4647381	4647381	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4649247	4649247	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4825354	4825354	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26660789	26660792	+	Intron	DEL	TCTG	-	-	rs149217237		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPRIPL1	150771	broad.mit.edu	37	2	96994051	96994051	+	3'UTR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVD	3712	broad.mit.edu	37	15	40699843	40699843	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK2	3717	broad.mit.edu	37	9	5085254	5085254	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147008224	147008224	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147053079	147053079	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JARID2	3720	broad.mit.edu	37	6	15319083	15319083	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JARID2	3720	broad.mit.edu	37	6	15487634	15487634	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAZF1	221895	broad.mit.edu	37	7	27880661	27880661	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAZF1	221895	broad.mit.edu	37	7	28111291	28111291	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39778020	39778020	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39778486	39778486	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39803932	39803932	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123790021	123790021	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124165685	124165685	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124376392	124376392	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK1	23189	broad.mit.edu	37	9	625042	625042	+	Intron	DEL	T	-	-	rs112783531		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK4	163782	broad.mit.edu	37	1	62728897	62728897	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK4	163782	broad.mit.edu	37	1	62739586	62739586	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD5	131377	broad.mit.edu	37	3	42727276	42727276	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD8	84541	broad.mit.edu	37	3	67054199	67054199	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA5	3741	broad.mit.edu	37	12	5153858	5153858	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156009877	156009877	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156160483	156160483	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB1	3745	broad.mit.edu	37	20	48098276	48098276	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73531265	73531265	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC1	3746	broad.mit.edu	37	11	17799374	17799374	+	3'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC4	3749	broad.mit.edu	37	1	110768510	110768510	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211033650	211033650	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211255890	211255890	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211255892	211255892	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH3	23416	broad.mit.edu	37	12	49948152	49948152	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH3	23416	broad.mit.edu	37	12	49948284	49948284	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63246267	63246267	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63403950	63403950	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63416862	63416862	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63483528	63483528	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH6	81033	broad.mit.edu	37	17	61615426	61615426	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163241388	163241388	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19246013	19246013	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19470316	19470316	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19554502	19554502	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169780877	169780877	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	170081054	170081054	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	170123279	170123279	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	20851977	20851977	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	21008455	21008455	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	21178412	21178412	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	21936299	21936299	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ12	3768	broad.mit.edu	37	17	21319123	21319124	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ12	3768	broad.mit.edu	37	17	21319339	21319339	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ2	3759	broad.mit.edu	37	17	68171862	68171862	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155602269	155602269	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155711649	155711649	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ4	3761	broad.mit.edu	37	22	38824152	38824152	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ5	3762	broad.mit.edu	37	11	128773475	128773475	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ6	3763	broad.mit.edu	37	21	39213084	39213084	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ6	3763	broad.mit.edu	37	21	39213179	39213179	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88729606	88729606	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88739547	88739547	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88792682	88792682	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118956999	118956999	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK1	3775	broad.mit.edu	37	1	233783354	233783354	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78708918	78708918	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78771905	78771905	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78844340	78844340	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78880746	78880746	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB1	3779	broad.mit.edu	37	5	169810651	169810651	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB2	10242	broad.mit.edu	37	3	178389249	178389249	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN2	3781	broad.mit.edu	37	5	113829163	113829163	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73696833	73696833	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73696963	73696963	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73843774	73843774	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73867233	73867233	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNS3	3790	broad.mit.edu	37	2	18112326	18112326	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138669216	138669216	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196269660	196269660	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196577340	196577340	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196577362	196577362	+	Silent	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36645026	36645026	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD16	57528	broad.mit.edu	37	5	143838822	143838822	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD18	130535	broad.mit.edu	37	2	201369767	201369767	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD1	284252	broad.mit.edu	37	18	24173391	24173393	+	Intron	DEL	GAG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD1	284252	broad.mit.edu	37	18	24173511	24173512	+	Intron	INS	-	ACA	ACA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD1	284252	broad.mit.edu	37	18	24180066	24180066	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD1	284252	broad.mit.edu	37	18	24180788	24180788	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD1	284252	broad.mit.edu	37	18	24186956	24186957	+	Intron	DEL	AA	-	-	rs10529759		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215751502	215751502	+	Intron	SNP	G	A	A	rs140073774	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215760009	215760009	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44177184	44177184	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELC1	79070	broad.mit.edu	37	13	103441303	103441303	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM2B	84678	broad.mit.edu	37	12	121972260	121972260	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM2B	84678	broad.mit.edu	37	12	122018107	122018107	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4B	23030	broad.mit.edu	37	19	5071113	5071113	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	6834586	6834586	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	6915872	6915872	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	6918306	6918306	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	404814	404814	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	443549	443558	+	Frame_Shift_Del	DEL	CAGGCATGTT	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202718210	202718210	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53222185	53222185	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55958976	55958976	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55963918	55963918	+	Missense_Mutation	SNP	C	A	A	rs149901681		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55964401	55964401	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55971034	55971034	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55971177	55971177	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142638226	142638226	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142655127	142655127	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDC1	80759	broad.mit.edu	37	6	73952133	73952133	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS2	202559	broad.mit.edu	37	6	62390939	62390939	+	Missense_Mutation	SNP	A	G	G	rs111625311		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS2	202559	broad.mit.edu	37	6	62442462	62442462	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS3	10656	broad.mit.edu	37	8	136554719	136554719	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0020	9933	broad.mit.edu	37	9	2811297	2811297	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26942571	26942571	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0146	23514	broad.mit.edu	37	8	48353143	48353143	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0146	23514	broad.mit.edu	37	8	48376976	48376976	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0226	9711	broad.mit.edu	37	3	197422619	197422619	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0317	9870	broad.mit.edu	37	14	75130730	75130730	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34787415	34787415	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34832328	34832328	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0406	9675	broad.mit.edu	37	20	36640859	36640859	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43896738	43896739	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0586	9786	broad.mit.edu	37	14	58939067	58939067	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0652	9776	broad.mit.edu	37	11	46665838	46665838	+	5'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0748	9840	broad.mit.edu	37	12	55359857	55359857	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0748	9840	broad.mit.edu	37	12	55359894	55359894	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	96999910	96999910	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0895	23366	broad.mit.edu	37	7	36423521	36423521	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154548359	154548359	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1033	23325	broad.mit.edu	37	12	105516089	105516089	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1045	23349	broad.mit.edu	37	9	34971162	34971162	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1045	23349	broad.mit.edu	37	9	34971409	34971409	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1045	23349	broad.mit.edu	37	9	34971551	34971551	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1045	23349	broad.mit.edu	37	9	34977564	34977564	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1147	57189	broad.mit.edu	37	7	141366214	141366214	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24036445	24036445	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24763057	24763057	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24821924	24821924	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24825837	24825837	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24833666	24833666	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1244	57221	broad.mit.edu	37	6	138540690	138540690	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1244	57221	broad.mit.edu	37	6	138611183	138611183	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1267	284058	broad.mit.edu	37	17	44213857	44213857	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1274	27143	broad.mit.edu	37	10	72288965	72288966	+	Intron	INS	-	A	A	rs72290492		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1274	27143	broad.mit.edu	37	10	72289436	72289436	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1310	55683	broad.mit.edu	37	2	97269867	97269867	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324L	222223	broad.mit.edu	37	7	86522172	86522172	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324L	222223	broad.mit.edu	37	7	86526709	86526709	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324L	222223	broad.mit.edu	37	7	86547761	86547761	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1328	57536	broad.mit.edu	37	18	34513788	34513788	+	Intron	SNP	G	T	T	rs147466932	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94039286	94039286	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94041695	94041695	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94088850	94088850	+	Silent	SNP	C	A	A	rs7160631	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94120360	94120360	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94120394	94120394	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1430	57587	broad.mit.edu	37	4	186083983	186083983	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1462	57608	broad.mit.edu	37	10	30336463	30336463	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1462	57608	broad.mit.edu	37	10	30362576	30362577	+	Intron	INS	-	TCCT	TCCT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1468	57614	broad.mit.edu	37	18	59933944	59933944	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1468	57614	broad.mit.edu	37	18	59954861	59954861	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1486	57624	broad.mit.edu	37	2	226320968	226320968	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1486	57624	broad.mit.edu	37	2	226447029	226447029	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100053576	100053576	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100077235	100077235	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100136640	100136640	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1539	80256	broad.mit.edu	37	9	35105288	35105288	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138603939	138603939	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1598	57698	broad.mit.edu	37	10	118689514	118689514	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1614	57710	broad.mit.edu	37	1	180885637	180885637	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1614	57710	broad.mit.edu	37	1	180904852	180904852	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43458880	43458880	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43550088	43550088	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1704	55425	broad.mit.edu	37	13	45580263	45580263	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1918342	1918342	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1920039	1920039	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1920383	1920383	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36870209	36870209	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20762813	20762814	+	Intron	INS	-	CC	CC	rs142699908	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20912888	20912888	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20931704	20931704	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1804	84451	broad.mit.edu	37	1	233490644	233490644	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1804	84451	broad.mit.edu	37	1	233511714	233511714	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2018	205717	broad.mit.edu	37	3	113376755	113376755	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73962657	73962657	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF12	113220	broad.mit.edu	37	9	116854636	116854636	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13B	23303	broad.mit.edu	37	8	28981541	28981541	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44839103	44839103	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44869002	44869002	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16304322	16304322	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21013867	21013867	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21039944	21039944	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91505770	91505770	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91514305	91514305	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39735795	39735795	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200974190	200974190	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF23	9493	broad.mit.edu	37	15	69737187	69737187	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF24	347240	broad.mit.edu	37	9	34310921	34310921	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3B	9371	broad.mit.edu	37	20	30898858	30898858	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3C	3797	broad.mit.edu	37	2	26179321	26179321	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4A	24137	broad.mit.edu	37	X	69640090	69640090	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154393686	154393686	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57963210	57963210	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5B	3799	broad.mit.edu	37	10	32337570	32337570	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5C	3800	broad.mit.edu	37	2	149803270	149803270	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39465501	39465501	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF7	374654	broad.mit.edu	37	15	90190721	90190721	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFC3	3801	broad.mit.edu	37	16	57794777	57794777	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL1	3802	broad.mit.edu	37	19	55286890	55286890	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55272157	55272157	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55330069	55330069	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55346435	55346435	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55350801	55350801	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36353436	36353436	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL3	84623	broad.mit.edu	37	11	126367227	126367227	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	157972569	157972569	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158020154	158020154	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF12	11278	broad.mit.edu	37	13	74326052	74326052	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF17	128209	broad.mit.edu	37	1	44569921	44569921	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF8	11279	broad.mit.edu	37	X	56291790	56291790	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC10	23008	broad.mit.edu	37	7	129770407	129770407	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC1	122773	broad.mit.edu	37	14	50177066	50177066	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL13	90293	broad.mit.edu	37	X	117079539	117079539	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70353527	70353527	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70445412	70445412	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70469365	70469365	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70514419	70514419	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL21	9903	broad.mit.edu	37	1	6659460	6659460	+	Missense_Mutation	SNP	G	T	T	rs143989562		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL29	114818	broad.mit.edu	37	2	23844433	23844433	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86877246	86877246	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK15	55554	broad.mit.edu	37	19	51330043	51330043	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK2	3817	broad.mit.edu	37	19	51381282	51381282	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK3	354	broad.mit.edu	37	19	51362901	51362901	+	3'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK3	354	broad.mit.edu	37	19	51363384	51363384	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK4	9622	broad.mit.edu	37	19	51412525	51412525	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK5	25818	broad.mit.edu	37	19	51451939	51451939	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLKB1	3818	broad.mit.edu	37	4	187177122	187177122	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRG1	10219	broad.mit.edu	37	12	9147751	9147751	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KL	9365	broad.mit.edu	37	13	33628454	33628454	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241696258	241696258	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241715312	241715313	+	Intron	INS	-	GG	GG	rs147430596	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241757996	241757996	+	3'UTR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNB1	3837	broad.mit.edu	37	17	45752019	45752019	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152731942	152731942	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT1	3848	broad.mit.edu	37	12	53070045	53070045	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT1	3848	broad.mit.edu	37	12	53070112	53070112	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT222	125113	broad.mit.edu	37	17	38821221	38821221	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT32	3882	broad.mit.edu	37	17	39619273	39619273	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39595188	39595188	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39597007	39597007	+	Missense_Mutation	SNP	C	A	A	rs113218990		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT39	390792	broad.mit.edu	37	17	39116593	39116593	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT39	390792	broad.mit.edu	37	17	39118342	39118342	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT3	3850	broad.mit.edu	37	12	53184974	53184974	+	Intron	SNP	G	A	A	rs78656321	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT40	125115	broad.mit.edu	37	17	39135359	39135359	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT5	3852	broad.mit.edu	37	12	52910866	52910866	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT5	3852	broad.mit.edu	37	12	52913793	52913793	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52886967	52886967	+	Silent	SNP	G	T	T	rs11540285		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52844334	52844334	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52845504	52845504	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT71	112802	broad.mit.edu	37	12	52939552	52939552	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT71	112802	broad.mit.edu	37	12	52943834	52943834	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT71	112802	broad.mit.edu	37	12	52944080	52944080	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52986522	52986523	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52986695	52986695	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT75	9119	broad.mit.edu	37	12	52826763	52826763	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53162368	53162368	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53165751	53165751	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT77	374454	broad.mit.edu	37	12	53086372	53086372	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT77	374454	broad.mit.edu	37	12	53090317	53090317	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT78	196374	broad.mit.edu	37	12	53240158	53240158	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT79	338785	broad.mit.edu	37	12	53217599	53217599	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT80	144501	broad.mit.edu	37	12	52565868	52565868	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT81	3887	broad.mit.edu	37	12	52681806	52681806	+	Missense_Mutation	SNP	G	T	T	rs144716678	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT9	3857	broad.mit.edu	37	17	39725917	39725917	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT9	3857	broad.mit.edu	37	17	39728292	39728292	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-5	83895	broad.mit.edu	37	17	39183048	39183048	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-11	386678	broad.mit.edu	37	21	46066914	46066914	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-7	386675	broad.mit.edu	37	21	46021344	46021344	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-1	140258	broad.mit.edu	37	21	31768257	31768257	+	5'Flank	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-1	337882	broad.mit.edu	37	21	31852692	31852693	+	5'Flank	DNP	CC	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-2	337969	broad.mit.edu	37	21	31859778	31859778	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP24-1	643803	broad.mit.edu	37	21	31654970	31654970	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP3-1	83896	broad.mit.edu	37	17	39165437	39165437	+	5'Flank	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-2	85291	broad.mit.edu	37	17	39334236	39334236	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-2	85291	broad.mit.edu	37	17	39334404	39334404	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-3	85290	broad.mit.edu	37	17	39324162	39324162	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-3	85290	broad.mit.edu	37	17	39324252	39324252	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-10	387273	broad.mit.edu	37	11	71276782	71276782	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-1	387264	broad.mit.edu	37	11	1605904	1605904	+	Frame_Shift_Del	DEL	T	-	-	rs113408385		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-1	387264	broad.mit.edu	37	11	1605965	1605965	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP6-2	337967	broad.mit.edu	37	21	31971052	31971052	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP8-1	337879	broad.mit.edu	37	21	32185351	32185351	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP9-2	83899	broad.mit.edu	37	17	39383132	39383132	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTDAP	388533	broad.mit.edu	37	19	35981352	35981352	+	5'UTR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25917824	25917824	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143742745	143742745	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143779220	143779220	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1TD1	54596	broad.mit.edu	37	1	62672596	62672597	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L2HGDH	79944	broad.mit.edu	37	14	50735895	50735895	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130425506	130425506	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130454809	130454809	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6241424	6241424	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6243170	6243170	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42143549	42143549	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42157866	42157866	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LACE1	246269	broad.mit.edu	37	6	108843473	108843473	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LACRT	90070	broad.mit.edu	37	12	55031438	55031438	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAD1	3898	broad.mit.edu	37	1	201352395	201352395	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR2	3904	broad.mit.edu	37	19	55020234	55020234	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6958477	6958477	+	Nonsense_Mutation	SNP	C	A	A	rs73390524	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6965194	6965194	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6976128	6976128	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7050581	7050581	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129601214	129601214	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129618940	129618940	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129649588	129649588	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129687532	129687532	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129802528	129802528	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129835579	129835579	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21437854	21437854	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21474271	21474271	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21530186	21530186	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112460575	112460575	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60889747	60889747	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107600081	107600081	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209789870	209789870	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209808836	209808836	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107692774	107692774	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107738772	107738772	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107746934	107746934	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133928337	133928337	+	Missense_Mutation	SNP	G	T	T	rs150699964	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMP1	3916	broad.mit.edu	37	13	113960865	113960865	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMP1	3916	broad.mit.edu	37	13	113975666	113975666	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARGE	9215	broad.mit.edu	37	22	33716295	33716295	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1	23367	broad.mit.edu	37	5	154185566	154185566	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP6	55323	broad.mit.edu	37	15	71128756	71128757	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS4	79603	broad.mit.edu	37	19	8321918	8321918	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS6	253782	broad.mit.edu	37	2	169622886	169622886	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS1	9113	broad.mit.edu	37	6	150018289	150018289	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAYN	143903	broad.mit.edu	37	11	111428588	111428588	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBX1	10660	broad.mit.edu	37	10	102987515	102987515	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1B	353132	broad.mit.edu	37	1	152784985	152784985	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2A	353139	broad.mit.edu	37	1	152671302	152671302	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2A	353139	broad.mit.edu	37	1	152671415	152671415	+	Missense_Mutation	SNP	C	A	A	rs112496497		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2B	26239	broad.mit.edu	37	1	152659308	152659308	+	5'UTR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE5A	254910	broad.mit.edu	37	1	152484228	152484228	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCK	3932	broad.mit.edu	37	1	32741901	32741901	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN1	3933	broad.mit.edu	37	9	138416983	138416983	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCTL	197021	broad.mit.edu	37	15	66857252	66857252	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136564957	136564957	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16513180	16513180	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16531215	16531215	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16766930	16766930	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB3	11155	broad.mit.edu	37	10	88445410	88445410	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD2	401944	broad.mit.edu	37	1	22138963	22138963	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	36006904	36006904	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LECT2	3950	broad.mit.edu	37	5	135288647	135288647	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEF1	51176	broad.mit.edu	37	4	109010215	109010215	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPRE1	64175	broad.mit.edu	37	1	43221387	43221387	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPREL2	10536	broad.mit.edu	37	12	6946733	6946733	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66098940	66098940	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEP	3952	broad.mit.edu	37	7	127894641	127894641	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS3BP	3959	broad.mit.edu	37	17	76968425	76968425	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI2	55203	broad.mit.edu	37	4	25014122	25014122	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48941121	48941121	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104294216	104294216	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL4	375323	broad.mit.edu	37	3	9542782	9542782	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFP	10186	broad.mit.edu	37	13	40073088	40073088	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFP	10186	broad.mit.edu	37	13	40077327	40077328	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX4	89884	broad.mit.edu	37	1	180217658	180217658	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX6	26468	broad.mit.edu	37	9	124971944	124971944	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106535	55106535	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55087107	55087107	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA3	11026	broad.mit.edu	37	19	54802622	54802622	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA5	353514	broad.mit.edu	37	19	54823092	54823092	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55176499	55176499	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54760388	54760388	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRP2	79166	broad.mit.edu	37	19	55221374	55221374	+	RNA	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMK2	3985	broad.mit.edu	37	22	31668724	31668724	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMS2	55679	broad.mit.edu	37	2	128411949	128411949	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMS2	55679	broad.mit.edu	37	2	128412222	128412222	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	27950844	27950844	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	27982522	27982522	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	27990784	27990784	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	27995784	27995784	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	27999869	27999869	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	28149192	28149192	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	28641461	28641461	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO4	339398	broad.mit.edu	37	1	151773761	151773761	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPH	200879	broad.mit.edu	37	3	185229488	185229488	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPH	200879	broad.mit.edu	37	3	185245251	185245251	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPJ	142910	broad.mit.edu	37	10	90350367	90350367	+	5'UTR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIX1L	128077	broad.mit.edu	37	1	145487437	145487437	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1L	79748	broad.mit.edu	37	15	75112520	75112521	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1L	79748	broad.mit.edu	37	15	75116745	75116745	+	Silent	SNP	G	T	T	rs145391326		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBR1	64327	broad.mit.edu	37	7	156553265	156553266	+	Intron	INS	-	AAC	AAC	rs150542312	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD1	55788	broad.mit.edu	37	6	70389912	70389912	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO2	4005	broad.mit.edu	37	11	33881126	33881126	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76393660	76393660	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMOD1	25802	broad.mit.edu	37	1	201869593	201869593	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMOD2	442721	broad.mit.edu	37	7	123303145	123303145	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMTK2	22853	broad.mit.edu	37	7	97821251	97821251	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMTK3	114783	broad.mit.edu	37	19	49001621	49001621	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165174910	165174910	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165182696	165182696	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1B	4010	broad.mit.edu	37	9	129458719	129458719	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNX1	84708	broad.mit.edu	37	4	54362242	54362242	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100128542	100128542	broad.mit.edu	37	7	150444652	150444652	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238054044	238054044	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100188947	100188947	broad.mit.edu	37	10	93066864	93066864	+	RNA	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100190938	100190938	broad.mit.edu	37	17	40905566	40905566	+	RNA	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100302640	100302640	broad.mit.edu	37	3	106567881	106567881	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100302640	100302640	broad.mit.edu	37	3	106615735	106615735	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100302640	100302640	broad.mit.edu	37	3	106650722	106650724	+	Intron	DEL	CTC	-	-	rs148573905	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC144776	144776	broad.mit.edu	37	13	91569757	91569758	+	Intron	DEL	AT	-	-	rs35910784		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC153328	153328	broad.mit.edu	37	5	135186227	135186227	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC153910	153910	broad.mit.edu	37	6	142856693	142856694	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC162632	162632	broad.mit.edu	37	17	16701541	16701541	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148244738	148244738	+	Intron	SNP	G	A	A	rs75356739		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148349633	148349633	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC220429	220429	broad.mit.edu	37	13	50465280	50465280	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283404	283404	broad.mit.edu	37	12	52605715	52605715	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283867	283867	broad.mit.edu	37	16	65535604	65535604	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283867	283867	broad.mit.edu	37	16	65584403	65584403	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284440	284440	broad.mit.edu	37	19	19879627	19879627	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285375	285375	broad.mit.edu	37	3	13705690	13705690	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285375	285375	broad.mit.edu	37	3	13756469	13756469	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285401	285401	broad.mit.edu	37	3	62972671	62972671	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285401	285401	broad.mit.edu	37	3	63010401	63010401	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285401	285401	broad.mit.edu	37	3	63083200	63083200	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285692	285692	broad.mit.edu	37	5	9766849	9766849	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285692	285692	broad.mit.edu	37	5	9767784	9767784	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285692	285692	broad.mit.edu	37	5	9823835	9823836	+	Intron	DNP	GG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285692	285692	broad.mit.edu	37	5	9888671	9888671	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285696	285696	broad.mit.edu	37	5	17182016	17182016	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285696	285696	broad.mit.edu	37	5	17202710	17202710	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285954	285954	broad.mit.edu	37	7	41759778	41759778	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285954	285954	broad.mit.edu	37	7	41782010	41782010	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC338651	338651	broad.mit.edu	37	11	1619173	1619202	+	In_Frame_Del	DEL	CCCCCACAGGAGCCACAGCCCCCCTTGGAG	-	-	rs61869704	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC339524	339524	broad.mit.edu	37	1	87588112	87588112	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC374491	374491	broad.mit.edu	37	13	25163506	25163506	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC387646	387646	broad.mit.edu	37	10	27538455	27538455	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC389634	389634	broad.mit.edu	37	12	8512148	8512148	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC399744	399744	broad.mit.edu	37	10	38735774	38735774	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC399959	399959	broad.mit.edu	37	11	122036297	122036297	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC400696	400696	broad.mit.edu	37	19	40171444	40171444	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC400940	400940	broad.mit.edu	37	2	6126830	6126830	+	RNA	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49598103	49598103	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49689409	49689409	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49805784	49805784	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442459	442459	broad.mit.edu	37	X	98975607	98975607	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442459	442459	broad.mit.edu	37	X	99142124	99142124	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC493754	493754	broad.mit.edu	37	7	66021835	66021835	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550112	550112	broad.mit.edu	37	4	68582350	68582350	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC554202	554202	broad.mit.edu	37	9	21528359	21528359	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC643677	643677	broad.mit.edu	37	13	103386695	103386695	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148950202	148950202	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21936906	21936906	+	RNA	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646999	646999	broad.mit.edu	37	7	39649672	39649672	+	3'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653113	653113	broad.mit.edu	37	12	8393334	8393334	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653786	653786	broad.mit.edu	37	16	22558895	22558895	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653786	653786	broad.mit.edu	37	16	22580756	22580756	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91809352	91809352	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91831451	91831451	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC729467	729467	broad.mit.edu	37	1	59614083	59614083	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC729991-MEF2B	4207	broad.mit.edu	37	19	19299571	19299571	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22449755	22449755	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22536962	22536962	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXHD1	125336	broad.mit.edu	37	18	44085920	44085920	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160903668	160903668	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160961173	160961173	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160998291	160998291	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161007396	161007396	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161027647	161027647	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161055976	161055976	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161087187	161087187	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161087224	161087224	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT2	54947	broad.mit.edu	37	16	55590693	55590693	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82187622	82187622	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62453099	62453099	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62542640	62542640	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62720406	62720406	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11849171	11849171	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11852531	11852531	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11942818	11942818	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11955540	11955540	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN3	64900	broad.mit.edu	37	20	39980941	39980942	+	Intron	INS	-	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPL	4023	broad.mit.edu	37	8	19809404	19809404	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99762312	99762312	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	187925566	187925567	+	Intron	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188295533	188295540	+	Intron	DEL	GTTCCTTC	-	-	rs67188827		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151753066	151753066	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151849697	151849697	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH2	57631	broad.mit.edu	37	X	114400181	114400181	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH3	84859	broad.mit.edu	37	3	197547399	197547399	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH3	84859	broad.mit.edu	37	3	197557625	197557625	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN1	57622	broad.mit.edu	37	19	39805629	39805629	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40364538	40364538	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40371470	40371470	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40439901	40439901	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40456861	40456861	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40485949	40485949	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40529147	40529147	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRMP	4033	broad.mit.edu	37	12	25232316	25232316	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	140992511	140992511	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141027956	141027956	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141055368	141055368	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141081474	141081474	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141122288	141122288	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141182979	141182979	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141208192	141208192	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141283910	141283910	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141474207	141474207	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141528456	141528456	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141641395	141641395	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141656696	141656697	+	Intron	DNP	CT	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141709464	141709464	+	Missense_Mutation	SNP	C	A	A	rs28483746		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57581012	57581012	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	169985138	169985138	+	3'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170053218	170053218	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170063602	170063602	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170097528	170097528	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46924223	46924223	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46924422	46924422	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16A	55604	broad.mit.edu	37	6	25610328	25610328	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16B	90668	broad.mit.edu	37	14	24528179	24528179	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16B	90668	broad.mit.edu	37	14	24528928	24528928	+	Silent	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC23	10233	broad.mit.edu	37	12	7014888	7014888	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76377176	76377176	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37B	114659	broad.mit.edu	37	17	30374810	30374810	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC40	55631	broad.mit.edu	37	1	70611638	70611638	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC42	115353	broad.mit.edu	37	1	54427948	54427948	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC48	83450	broad.mit.edu	37	17	17907825	17907825	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4B	94030	broad.mit.edu	37	19	51021166	51021166	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4B	94030	broad.mit.edu	37	19	51022252	51022252	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137945	40137945	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40557500	40557500	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40557524	40557524	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40634643	40634643	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40988387	40988387	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40988438	40988438	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	41415677	41415677	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	41423740	41423740	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4	64101	broad.mit.edu	37	7	127669175	127669175	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52861921	52861921	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133623603	133623603	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70195665	70195665	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70257779	70257779	+	Silent	SNP	T	C	C	rs34658389	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70339240	70339240	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70385375	70385375	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70394756	70394756	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70445926	70445926	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70446073	70446073	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70484347	70484347	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRFIP2	9209	broad.mit.edu	37	3	37133153	37133153	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85638758	85638758	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74505195	74505195	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74507269	74507269	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74540441	74540441	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74562614	74562614	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ4	344657	broad.mit.edu	37	3	169548429	169548429	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101598268	101598268	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101608788	101608788	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40651201	40651201	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40734977	40734977	+	Intron	DEL	G	-	-	rs35237109		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40758836	40758836	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204588546	204588546	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN3	54674	broad.mit.edu	37	7	110763476	110763476	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM1	347730	broad.mit.edu	37	2	80529373	80529373	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM3	347731	broad.mit.edu	37	10	68686157	68686157	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	76975852	76975852	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77008660	77008660	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77745714	77745714	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115740892	115740892	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115839789	115839789	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115920131	115920131	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	116018183	116018183	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	116029760	116029761	+	Intron	DEL	TG	-	-	rs145674562		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	116163926	116163926	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM14A	26065	broad.mit.edu	37	19	34706522	34706522	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LST-3TM12	338821	broad.mit.edu	37	12	21207570	21207570	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTA4H	4048	broad.mit.edu	37	12	96408740	96408740	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33281295	33281295	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33328694	33328695	+	Intron	DEL	GA	-	-	rs71871697		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33477981	33477981	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33572319	33572319	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33590305	33590306	+	Intron	DEL	AG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74969991	74969991	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP3	4054	broad.mit.edu	37	11	65311246	65311246	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTB	4050	broad.mit.edu	37	6	31549182	31549182	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTF	4057	broad.mit.edu	37	3	46484843	46484843	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTF	4057	broad.mit.edu	37	3	46497528	46497528	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTV1	84946	broad.mit.edu	37	6	144164468	144164468	+	5'Flank	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6G6C	80740	broad.mit.edu	37	6	31686681	31686681	+	3'UTR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY96	23643	broad.mit.edu	37	8	74922218	74922218	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160783596	160783596	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYNX1	66004	broad.mit.edu	37	8	143846158	143846158	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPD2	137797	broad.mit.edu	37	8	143833820	143833821	+	Frame_Shift_Del	DEL	CC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPLAL1	127018	broad.mit.edu	37	1	219347115	219347115	+	5'Flank	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPLAL1	127018	broad.mit.edu	37	1	219373330	219373330	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235918832	235918832	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235927008	235927008	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL4	131375	broad.mit.edu	37	3	42445624	42445624	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL4	131375	broad.mit.edu	37	3	42448994	42448994	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAB21L1	4081	broad.mit.edu	37	13	36049420	36049420	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39918039	39918039	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	14738448	14738448	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	15450266	15450266	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166974517	166974517	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAF	4094	broad.mit.edu	37	16	79628399	79628399	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA1	4100	broad.mit.edu	37	X	152488336	152488336	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB10	139422	broad.mit.edu	37	X	27840245	27840245	+	Silent	SNP	A	C	C	rs140221361		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB18	286514	broad.mit.edu	37	X	26157432	26157432	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB4	4115	broad.mit.edu	37	X	30261047	30261047	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140993473	140993473	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140968993	140968993	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140983193	140983193	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE1	57692	broad.mit.edu	37	X	75648955	75648955	+	Missense_Mutation	SNP	C	T	T	rs141421631		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65342156	65342156	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65531689	65531690	+	Intron	INS	-	CT	CT	rs1917529		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65673700	65673700	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77649214	77649214	+	Silent	SNP	G	A	A	rs140932089	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77830555	77830555	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77830661	77830662	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77973089	77973089	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78190956	78190956	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAG	4099	broad.mit.edu	37	19	35791398	35791398	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAL	4118	broad.mit.edu	37	2	95719290	95719290	+	3'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML2	84441	broad.mit.edu	37	11	95815972	95815972	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML2	84441	broad.mit.edu	37	11	95822777	95822777	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML2	84441	broad.mit.edu	37	11	95825224	95825224	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML2	84441	broad.mit.edu	37	11	95883070	95883070	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1A2	10905	broad.mit.edu	37	1	117957268	117957269	+	Intron	INS	-	C	C	rs78622511		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2C1	4123	broad.mit.edu	37	15	75651571	75651571	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANEA	79694	broad.mit.edu	37	6	96034506	96034506	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21207553	21207553	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21208110	21208110	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21210905	21210906	+	Intron	DEL	AG	-	-	rs35933478		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K6	5608	broad.mit.edu	37	17	67456129	67456129	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K6	5608	broad.mit.edu	37	17	67487409	67487409	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K14	9020	broad.mit.edu	37	17	43350986	43350986	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K15	389840	broad.mit.edu	37	X	19380748	19380748	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K8	1326	broad.mit.edu	37	10	30736621	30736621	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K4	9448	broad.mit.edu	37	2	102482824	102482824	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K4	9448	broad.mit.edu	37	2	102493354	102493354	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4	4134	broad.mit.edu	37	3	47912299	47912299	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D2	256714	broad.mit.edu	37	X	20030679	20030692	+	Intron	DEL	TGTTAATCATAAAA	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK13	5603	broad.mit.edu	37	6	36107183	36107183	+	3'UTR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1812742	1812742	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPT	4137	broad.mit.edu	37	17	44039746	44039746	+	Missense_Mutation	SNP	G	T	T	rs143210139		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPT	4137	broad.mit.edu	37	17	44073970	44073970	+	Missense_Mutation	SNP	G	T	T	rs141636979		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16067910	16067910	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16079648	16079648	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165150498	165150498	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH2	51257	broad.mit.edu	37	19	8503531	8503531	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217234394	217234394	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10397483	10397483	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10414706	10414706	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220815660	220815660	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK2	2011	broad.mit.edu	37	11	63670188	63670188	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK3	4140	broad.mit.edu	37	14	103878747	103878747	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK3	4140	broad.mit.edu	37	14	103923657	103923657	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARS2	92935	broad.mit.edu	37	2	198570940	198570940	+	Missense_Mutation	SNP	G	T	T	rs145093633	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARS	4141	broad.mit.edu	37	12	57881753	57881753	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARS	4141	broad.mit.edu	37	12	57894022	57894022	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAS1L	116511	broad.mit.edu	37	6	29454895	29454895	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAS1L	116511	broad.mit.edu	37	6	29455665	29455665	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186946307	186946307	+	Intron	SNP	C	A	A	rs116597062	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST2	23139	broad.mit.edu	37	1	46383264	46383264	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST2	23139	broad.mit.edu	37	1	46487571	46487571	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST3	23031	broad.mit.edu	37	19	18254702	18254703	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST3	23031	broad.mit.edu	37	19	18255377	18255377	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST4	375449	broad.mit.edu	37	5	66266326	66266326	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAT2B	27430	broad.mit.edu	37	5	162945153	162945153	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MB	4151	broad.mit.edu	37	22	36007193	36007193	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART6	401612	broad.mit.edu	37	X	103348942	103348942	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC2	64087	broad.mit.edu	37	5	70908768	70908768	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L2	23101	broad.mit.edu	37	3	182946001	182946001	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100382457	100382457	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM10	55388	broad.mit.edu	37	10	13217350	13217350	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM3	4172	broad.mit.edu	37	6	52138095	52138095	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN2	255231	broad.mit.edu	37	1	85397235	85397235	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6302908	6302908	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94046621	94046621	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94230546	94230546	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30679651	30679651	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDFI	4188	broad.mit.edu	37	6	41614042	41614042	+	Silent	SNP	G	A	A	rs1134905		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA1	266727	broad.mit.edu	37	6	37638567	37638567	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47311278	47311278	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47426535	47426535	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47530529	47530529	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47566402	47566402	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47571764	47571765	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47573890	47573891	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47600949	47600949	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH1	4190	broad.mit.edu	37	2	63821381	63821381	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90434913	90434913	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90503327	90503327	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME3	10873	broad.mit.edu	37	11	86176819	86176819	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECR	51102	broad.mit.edu	37	1	29542917	29542917	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151101514	151101514	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151107867	151107867	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70354970	70354970	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13	9969	broad.mit.edu	37	17	60059767	60059767	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED14	9282	broad.mit.edu	37	X	40539396	40539396	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED1	5469	broad.mit.edu	37	17	37607108	37607109	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEF2A	4205	broad.mit.edu	37	15	100230591	100230591	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEF2B	100271849	broad.mit.edu	37	19	19257687	19257687	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126770382	126770382	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF11	84465	broad.mit.edu	37	15	66293698	66293698	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42860558	42860559	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42125699	42125699	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37395912	37395912	+	5'Flank	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX2	4223	broad.mit.edu	37	7	15666612	15666612	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEP1A	4224	broad.mit.edu	37	6	46777373	46777373	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEP1A	4224	broad.mit.edu	37	6	46802995	46802995	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT11D1	64745	broad.mit.edu	37	14	21462040	21462041	+	Intron	INS	-	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT5D1	196074	broad.mit.edu	37	11	28135265	28135265	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEX3C	51320	broad.mit.edu	37	18	48703429	48703429	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP3	4238	broad.mit.edu	37	5	153432624	153432624	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFGE8	4240	broad.mit.edu	37	15	89444229	89444229	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD11	79157	broad.mit.edu	37	17	74774218	74774218	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD1	64747	broad.mit.edu	37	3	158531730	158531730	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD2A	84879	broad.mit.edu	37	1	40422998	40422998	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141719105	141719105	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141727372	141727372	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141730529	141730529	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141740853	141740853	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141755635	141755635	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141785666	141785666	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141796001	141796001	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4C	25834	broad.mit.edu	37	12	87199232	87199232	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5B	146664	broad.mit.edu	37	17	74899322	74899322	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5B	146664	broad.mit.edu	37	17	74934143	74934143	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5B	146664	broad.mit.edu	37	17	74944047	74944047	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5	4249	broad.mit.edu	37	2	135027871	135027871	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5	4249	broad.mit.edu	37	2	135099322	135099322	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC27382	149047	broad.mit.edu	37	1	78785933	78785933	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGEA5	10724	broad.mit.edu	37	10	103569910	103569910	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGLL	11343	broad.mit.edu	37	3	127529387	127529388	+	Intron	DEL	AC	-	-	rs34730307		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222803008	222803008	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL1	64780	broad.mit.edu	37	6	109771521	109771521	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18301350	18301350	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18445022	18445023	+	Intron	INS	-	ACA	ACA	rs142722202	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18462872	18462872	+	Intron	DEL	G	-	-	rs35209994		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICALL1	85377	broad.mit.edu	37	22	38333729	38333729	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MID1	4281	broad.mit.edu	37	X	10422852	10422852	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MINA	84864	broad.mit.edu	37	3	97677986	97677986	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIPOL1	145282	broad.mit.edu	37	14	37738133	37738133	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1182	100302132	broad.mit.edu	37	1	231155594	231155594	+	RNA	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1208	100302281	broad.mit.edu	37	8	129162249	129162249	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR512-2	574459	broad.mit.edu	37	19	54170033	54170033	+	5'Flank	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR518D	574489	broad.mit.edu	37	19	54238161	54238161	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519B	574469	broad.mit.edu	37	19	54197782	54197782	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR526A1	574475	broad.mit.edu	37	19	54209272	54209272	+	5'Flank	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR557	693142	broad.mit.edu	37	1	168344699	168344699	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR668	768214	broad.mit.edu	37	14	101521646	101521646	+	RNA	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MITF	4286	broad.mit.edu	37	3	70014048	70014048	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKL2	57496	broad.mit.edu	37	16	14327908	14327908	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKL2	57496	broad.mit.edu	37	16	14334351	14334351	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKNK1	8569	broad.mit.edu	37	1	47046342	47046342	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23812484	23812484	+	3'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKS1	54903	broad.mit.edu	37	17	56284417	56284417	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH1	4292	broad.mit.edu	37	3	37070415	37070415	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49420124	49420124	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151845739	151845739	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT10	8028	broad.mit.edu	37	10	21962540	21962540	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20543953	20543954	+	Intron	INS	-	AT	AT	rs141404437	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2527977	2527977	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89179959	89179959	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP19	4327	broad.mit.edu	37	12	56233400	56233401	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102565841	102565841	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102573687	102573687	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55521758	55521758	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55524265	55524265	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP8	4317	broad.mit.edu	37	11	102595616	102595616	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90830522	90830523	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMS19	64210	broad.mit.edu	37	10	99225839	99225839	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MN1	4330	broad.mit.edu	37	22	28194147	28194147	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOBKL2B	79817	broad.mit.edu	37	9	27378419	27378419	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOBKL2B	79817	broad.mit.edu	37	9	27455253	27455253	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCOS	55034	broad.mit.edu	37	18	33836781	33836781	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49576693	49576693	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGAT2	80168	broad.mit.edu	37	11	75431753	75431753	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MON1B	22879	broad.mit.edu	37	16	77232114	77232114	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108763514	108763514	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108780724	108780724	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108817260	108817260	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC3	23515	broad.mit.edu	37	21	37710217	37710217	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4L2	9643	broad.mit.edu	37	X	102931491	102931491	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4	10934	broad.mit.edu	37	4	174537450	174537450	+	Silent	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORN5	254956	broad.mit.edu	37	9	124929362	124929362	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132694056	132694056	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132695680	132695680	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPDZ	8777	broad.mit.edu	37	9	13133860	13133860	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPDZ	8777	broad.mit.edu	37	9	13175958	13175958	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH9	10198	broad.mit.edu	37	12	123694650	123694650	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPL	4352	broad.mit.edu	37	1	43803464	43803464	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPL	4352	broad.mit.edu	37	1	43805596	43805596	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP3	4356	broad.mit.edu	37	17	41888031	41888031	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP4	58538	broad.mit.edu	37	2	202545734	202545734	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP4	58538	broad.mit.edu	37	2	202547586	202547586	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED1	758	broad.mit.edu	37	22	43834266	43834266	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30431470	30431470	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30510406	30510407	+	Intron	INS	-	AC	AC	rs149428709	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30513756	30513756	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPRIP	23164	broad.mit.edu	37	17	17076055	17076055	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC2	9902	broad.mit.edu	37	17	60758522	60758522	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MREG	55686	broad.mit.edu	37	2	216809647	216809647	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX3	117195	broad.mit.edu	37	11	18154412	18154412	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL47	57129	broad.mit.edu	37	3	179306784	179306784	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL49	740	broad.mit.edu	37	11	64892873	64892873	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS18A	55168	broad.mit.edu	37	6	43652016	43652016	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRRF	92399	broad.mit.edu	37	9	125042807	125042807	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRTO4	51154	broad.mit.edu	37	1	19582447	19582447	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A10	341116	broad.mit.edu	37	11	60563151	60563151	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A12	54860	broad.mit.edu	37	11	60264992	60264992	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A12	54860	broad.mit.edu	37	11	60265158	60265158	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A15	219995	broad.mit.edu	37	11	60538719	60538719	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A15	219995	broad.mit.edu	37	11	60542994	60542994	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60231726	60231726	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A2	2206	broad.mit.edu	37	11	59857104	59857104	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A2	2206	broad.mit.edu	37	11	59861086	59861086	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A3	932	broad.mit.edu	37	11	59834493	59834493	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A4A	51338	broad.mit.edu	37	11	60064813	60064813	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6E	245802	broad.mit.edu	37	11	60102465	60102465	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A7	58475	broad.mit.edu	37	11	60156904	60156904	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH3	4437	broad.mit.edu	37	5	80109363	80109363	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSN	4478	broad.mit.edu	37	X	64956699	64956699	+	Silent	SNP	G	A	A	rs113359990		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSN	4478	broad.mit.edu	37	X	64956952	64956952	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSR1	4481	broad.mit.edu	37	8	15998348	15998348	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRB3	253827	broad.mit.edu	37	12	65744216	65744216	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRB3	253827	broad.mit.edu	37	12	65821896	65821896	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1P2	11209	broad.mit.edu	37	1	16969634	16969634	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSX1	4487	broad.mit.edu	37	4	4864782	4864782	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1G	4495	broad.mit.edu	37	16	56702013	56702013	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121476051	121476051	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTF2	22823	broad.mit.edu	37	1	93576304	93576304	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFSD	64779	broad.mit.edu	37	16	86575623	86575623	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR4	9110	broad.mit.edu	37	17	56582511	56582511	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR7	9108	broad.mit.edu	37	8	17199118	17199118	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63444594	63444594	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63565051	63565051	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30653420	30653420	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30654300	30654300	+	Translation_Start_Site	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237008153	237008153	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC12	10071	broad.mit.edu	37	7	100648194	100648194	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC13	56667	broad.mit.edu	37	3	124632263	124632263	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC15	143662	broad.mit.edu	37	11	26584732	26584732	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8966620	8966620	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8992982	8992982	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9002505	9002505	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9007032	9007032	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9021495	9021495	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9064622	9064622	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9069244	9069244	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9070919	9070919	+	Silent	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100678788	100678788	+	Missense_Mutation	SNP	A	G	G	rs145039008		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100680177	100680177	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100684661	100684661	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1017147	1017147	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUM1L1	139221	broad.mit.edu	37	X	105450166	105450166	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUTYH	4595	broad.mit.edu	37	1	45796910	45796910	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49403324	49403324	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MVK	4598	broad.mit.edu	37	12	110034265	110034265	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3241144	3241144	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC1	4604	broad.mit.edu	37	12	102045178	102045178	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC1	4604	broad.mit.edu	37	12	102078204	102078204	+	Splice_Site	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC3	4607	broad.mit.edu	37	11	47374199	47374199	+	5'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYB	4602	broad.mit.edu	37	6	135520132	135520132	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77664259	77664259	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77752145	77752145	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77835589	77835589	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBPAP	84073	broad.mit.edu	37	17	48599494	48599494	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15813705	15813705	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10233701	10233701	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10263629	10263629	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH14	79784	broad.mit.edu	37	19	50812515	50812515	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108112838	108112838	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108135677	108135677	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10399761	10399761	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10399966	10399966	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10405263	10405263	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10411093	10411093	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10428033	10428033	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10432993	10432993	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10539076	10539076	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10352218	10352218	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23851757	23851757	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23858206	23858206	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23872387	23872387	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23876119	23876119	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10298676	10298676	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10302183	10302183	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL10	93408	broad.mit.edu	37	7	101257133	101257133	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL10	93408	broad.mit.edu	37	7	101259405	101259405	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL7	58498	broad.mit.edu	37	7	44179969	44179969	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL7	58498	broad.mit.edu	37	7	44180797	44180797	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16681406	16681406	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16766406	16766406	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109472791	109472791	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109475610	109475610	+	Missense_Mutation	SNP	G	T	T	rs405397	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109507876	109507876	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109550584	109550584	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109817472	109817472	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27409160	27409161	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26273910	26273910	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26304476	26304476	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26306919	26306919	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1A	4640	broad.mit.edu	37	12	57423917	57423917	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192273773	192273773	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31048086	31048086	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31087344	31087344	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31099943	31099943	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31158923	31158923	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1E	4643	broad.mit.edu	37	15	59430210	59430210	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1E	4643	broad.mit.edu	37	15	59494582	59494582	+	Silent	SNP	C	G	G	rs142116200	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1F	4542	broad.mit.edu	37	19	8594953	8594953	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1G	64005	broad.mit.edu	37	7	45016164	45016164	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1H	283446	broad.mit.edu	37	12	109841715	109841715	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26455078	26455078	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26471891	26471892	+	Intron	DEL	GT	-	-	rs141478506		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171034822	171034822	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171230766	171230766	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47501149	47501150	+	Intron	INS	-	CA	CA	rs146410387	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76624644	76624644	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128341865	128341865	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128377823	128377823	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128389161	128389162	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72146615	72146615	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17311040	17311040	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12666919	12666919	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOD1	4654	broad.mit.edu	37	11	17741528	17741528	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOD1	4654	broad.mit.edu	37	11	17741777	17741777	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95216615	95216615	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOG	4656	broad.mit.edu	37	1	203054839	203054839	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24389785	24389785	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24402585	24402585	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69956992	69956992	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYRIP	25924	broad.mit.edu	37	3	40068721	40068721	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYRIP	25924	broad.mit.edu	37	3	40135958	40135958	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST2	11143	broad.mit.edu	37	17	47895246	47895246	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST4	23522	broad.mit.edu	37	10	76788500	76788500	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1946754	1946754	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP2L2	10443	broad.mit.edu	37	13	33016677	33016677	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP2	55728	broad.mit.edu	37	4	40146365	40146365	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA16	79612	broad.mit.edu	37	13	41894718	41894718	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA16	79612	broad.mit.edu	37	13	41895016	41895016	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA16	79612	broad.mit.edu	37	13	41929322	41929322	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89867913	89867913	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89903401	89903401	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	174777664	174777664	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAE1	8883	broad.mit.edu	37	16	66847648	66847648	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAGLU	4669	broad.mit.edu	37	17	40685979	40685979	+	5'Flank	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101710324	101710324	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	102051600	102051600	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L2	4674	broad.mit.edu	37	X	72433664	72433666	+	In_Frame_Del	DEL	TCC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L2	4674	broad.mit.edu	37	X	72434417	72434417	+	5'UTR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L3	4675	broad.mit.edu	37	X	92927797	92927797	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPA	8775	broad.mit.edu	37	19	48003848	48003848	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPSA	9476	broad.mit.edu	37	19	50865066	50865066	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARS2	79731	broad.mit.edu	37	11	78270776	78270776	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT10	55226	broad.mit.edu	37	11	34149018	34149018	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT10	55226	broad.mit.edu	37	11	34162954	34162955	+	Intron	INS	-	TC	TC	rs141705432		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19394630	19394630	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19503040	19503040	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20112282	20112282	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78362554	78362554	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78400870	78400870	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78513494	78513494	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78574592	78574592	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15467740	15467740	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15506640	15506640	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL1	65065	broad.mit.edu	37	2	204055853	204055853	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90958406	90958406	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90993627	90993627	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145289950	145289950	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145304090	145304090	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145311762	145311762	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145360061	145360061	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF14	25832	broad.mit.edu	37	1	148012571	148012571	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF16	728936	broad.mit.edu	37	1	148754556	148754556	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16891786	16891786	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16918083	16918083	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16924000	16924000	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120380026	120380026	+	Intron	SNP	G	T	T	rs141644184	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144550341	144550342	+	Intron	DEL	AA	-	-	rs71252608		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144612228	144612228	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145061265	145061265	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145067442	145067442	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145068531	145068531	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145070379	145070379	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145074703	145074703	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145074783	145074783	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145112281	145112281	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145112648	145112648	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113105836	113105836	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22664427	22664427	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAN	1463	broad.mit.edu	37	19	19339016	19339016	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG2	54892	broad.mit.edu	37	7	158441557	158441557	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG2	54892	broad.mit.edu	37	7	158444822	158444822	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG2	54892	broad.mit.edu	37	7	158449451	158449451	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH	23397	broad.mit.edu	37	2	97007238	97007238	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCBP1	4686	broad.mit.edu	37	9	100403202	100403202	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54912788	54912788	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133503809	133503809	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133540303	133540303	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133540444	133540444	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133542197	133542197	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133554165	133554165	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133713820	133713820	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133965642	133965642	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	134076315	134076315	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	134102021	134102021	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	134104280	134104280	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	134134335	134134335	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	134139337	134139337	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	134279985	134279985	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA5	57727	broad.mit.edu	37	20	44695640	44695640	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124993064	124993064	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00119	348808	broad.mit.edu	37	3	132509999	132509999	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00202	387644	broad.mit.edu	37	10	27223368	27223368	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG2	57447	broad.mit.edu	37	14	21510765	21510765	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG2	57447	broad.mit.edu	37	14	21510991	21510991	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115751102	115751102	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115767154	115767154	+	Splice_Site	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	116015922	116015922	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA9	4704	broad.mit.edu	37	12	4768355	4768355	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFV1	4723	broad.mit.edu	37	11	67376216	67376216	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21101656	21101656	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152499460	152499460	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152522015	152522015	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152544162	152544162	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB2	54550	broad.mit.edu	37	16	84035996	84035996	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD1	121441	broad.mit.edu	37	12	97338413	97338413	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4	4734	broad.mit.edu	37	15	56207664	56207664	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD9	4739	broad.mit.edu	37	6	11192453	11192453	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFL	4747	broad.mit.edu	37	8	24810479	24810479	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEGR1	257194	broad.mit.edu	37	1	72241943	72241943	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEIL3	55247	broad.mit.edu	37	4	178243682	178243682	+	Missense_Mutation	SNP	G	T	T	rs34112288	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27183102	27183102	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27233814	27233815	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130987390	130987390	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK8	284086	broad.mit.edu	37	17	27068291	27068291	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK9	91754	broad.mit.edu	37	14	75551441	75551441	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20760790	20760790	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20790938	20790938	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20970958	20970958	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20981800	20981800	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20996732	20996732	+	Intron	DEL	T	-	-	rs5790152		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21114379	21114379	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21176857	21176857	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21251132	21251132	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21594969	21594969	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45042401	45042401	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45170741	45170741	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45171087	45171087	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45182080	45182080	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NES	10763	broad.mit.edu	37	1	156642581	156642581	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NET1	10276	broad.mit.edu	37	10	5496321	5496321	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70450810	70450810	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70498486	70498486	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU3	10825	broad.mit.edu	37	11	74717042	74717042	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEURL4	84461	broad.mit.edu	37	17	7224854	7224854	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEURL	9148	broad.mit.edu	37	10	105331682	105331682	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROD4	58158	broad.mit.edu	37	12	55420142	55420142	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	21134332	21134332	+	RNA	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22140265	22140265	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22145509	22145509	+	RNA	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF2	4771	broad.mit.edu	37	22	30032943	30032943	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF2	4771	broad.mit.edu	37	22	30051570	30051570	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204945843	204945843	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204956804	204956804	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204982007	204982007	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC2IP	84901	broad.mit.edu	37	16	28975070	28975070	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC3	4775	broad.mit.edu	37	16	68156649	68156649	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC3	4775	broad.mit.edu	37	16	68225225	68225225	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC4	4776	broad.mit.edu	37	14	24842929	24842929	+	Missense_Mutation	SNP	C	G	G	rs140124494		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC4	4776	broad.mit.edu	37	14	24846974	24846974	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2	4778	broad.mit.edu	37	12	54687297	54687297	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIA	4774	broad.mit.edu	37	1	61554415	61554415	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIB	4781	broad.mit.edu	37	9	14088355	14088355	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIX	4784	broad.mit.edu	37	19	13139658	13139658	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKB2	4791	broad.mit.edu	37	10	104158449	104158449	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFX1	4799	broad.mit.edu	37	9	33364822	33364822	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGEF	25791	broad.mit.edu	37	2	233784981	233784981	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEJ1	79840	broad.mit.edu	37	2	220022695	220022696	+	Intron	DEL	TC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236154433	236154433	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52486851	52486851	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52495615	52495615	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52520549	52520549	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINJ2	4815	broad.mit.edu	37	12	675315	675315	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINJ2	4815	broad.mit.edu	37	12	695710	695710	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL4	348938	broad.mit.edu	37	5	156900019	156900019	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	36962301	36962301	+	Missense_Mutation	SNP	G	T	T	rs142923613	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	36975797	36975797	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPSNAP1	8508	broad.mit.edu	37	22	29956606	29956606	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124215813	124215813	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124777112	124777112	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124855399	124855399	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	125112599	125112599	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	125117250	125117250	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63396264	63396264	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAPL	222698	broad.mit.edu	37	6	28228315	28228316	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAP	79576	broad.mit.edu	37	X	119068556	119068556	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKX2-3	159296	broad.mit.edu	37	10	101294877	101294877	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLE1	54475	broad.mit.edu	37	17	33463022	33463022	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173247325	173247325	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN3	54413	broad.mit.edu	37	X	70389250	70389250	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5811483	5811484	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5821360	5821360	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5827247	5827247	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	6069310	6069310	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4Y	22829	broad.mit.edu	37	Y	16952514	16952515	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP11	204801	broad.mit.edu	37	19	56316487	56316487	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54301492	54301492	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54313028	54313028	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56410347	56410347	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56413425	56413425	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56424480	56424480	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7063863	7063863	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5462876	5462876	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5485025	5485025	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247592683	247592683	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247597811	247597811	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56369394	56369394	+	Missense_Mutation	SNP	C	A	A	rs147162207	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56382065	56382065	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56572978	56572978	+	3'UTR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56477721	56477721	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT2	23057	broad.mit.edu	37	1	183230190	183230190	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101096817	101096817	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR2	56923	broad.mit.edu	37	5	151784152	151784152	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR2	56923	broad.mit.edu	37	5	151784488	151784488	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOB1	28987	broad.mit.edu	37	16	69790379	69790379	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOBOX	135935	broad.mit.edu	37	7	144098930	144098930	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC2L	26155	broad.mit.edu	37	1	892253	892253	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD1	10392	broad.mit.edu	37	7	30490947	30490947	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL8	55035	broad.mit.edu	37	9	95086546	95086546	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP16	51491	broad.mit.edu	37	5	175811206	175811206	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP58	51602	broad.mit.edu	37	2	203146940	203146940	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117660409	117660409	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26094792	26094792	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26096665	26096665	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120462321	120462321	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120523842	120523842	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120549926	120549926	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120559448	120559448	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH3	4854	broad.mit.edu	37	19	15300051	15300051	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA2	4858	broad.mit.edu	37	19	46465299	46465299	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155730720	155730720	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155764331	155764331	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89125255	89125255	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89190294	89190294	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69347677	69347677	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS2	4862	broad.mit.edu	37	2	101521260	101521260	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	33971833	33971834	+	Intron	INS	-	G	G	rs142821776	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34177013	34177013	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34179760	34179760	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66188688	66188689	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66190613	66190613	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44560418	44560418	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPEPPS	9520	broad.mit.edu	37	17	45668161	45668161	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP3	27031	broad.mit.edu	37	3	132427137	132427137	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP4	261734	broad.mit.edu	37	1	5934991	5934991	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36333144	36333144	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36340063	36340063	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS2	7827	broad.mit.edu	37	1	179526132	179526132	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153652924	153652924	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34739815	34739815	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34884607	34884607	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34885045	34885045	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPTX1	4884	broad.mit.edu	37	17	78446958	78446958	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY	4852	broad.mit.edu	37	7	24329296	24329296	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H3	10062	broad.mit.edu	37	11	47282886	47282887	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115365321	115365322	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115365556	115365556	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115391738	115391738	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRBF2	29982	broad.mit.edu	37	10	64913808	64913808	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRBP1	29959	broad.mit.edu	37	2	27656155	27656155	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG2	9542	broad.mit.edu	37	5	139248302	139248302	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	83835943	83835943	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84360909	84360909	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84446982	84446982	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84450739	84450739	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84498528	84498528	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84618406	84618406	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84733509	84733509	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84744866	84744866	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG4	145957	broad.mit.edu	37	15	76254329	76254329	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16340033	16340033	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105190460	105190460	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRN1	51299	broad.mit.edu	37	6	5999554	5999554	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206659528	206659529	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50149075	50149075	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50208540	50208540	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50282164	50282164	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50551426	50551426	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50573858	50573858	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50723336	50723336	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50758552	50758552	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50847201	50847201	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50850783	50850783	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50988008	50988008	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51206507	51206507	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51255088	51255088	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64390746	64390746	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64453051	64453051	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	78997374	78997374	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79158858	79158858	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79374331	79374331	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79454625	79454625	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59501306	59501306	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN3	63899	broad.mit.edu	37	3	93782099	93782099	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN7	79730	broad.mit.edu	37	4	40810295	40810295	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1B	93034	broad.mit.edu	37	2	18765636	18765636	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF3	4908	broad.mit.edu	37	12	5593450	5593450	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131315470	131315470	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131409381	131409381	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131550479	131550479	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131550498	131550498	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131682211	131682211	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131692936	131692936	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131701325	131701325	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131720753	131720753	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131722415	131722415	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131724908	131724908	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131737912	131737912	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131808708	131808708	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131852369	131852369	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131864956	131864956	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132001231	132001231	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132016219	132016219	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132027857	132027857	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132032552	132032552	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132084355	132084355	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132098040	132098040	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132102250	132102250	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132163485	132163485	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107867442	107867442	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107867722	107867722	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG2	84628	broad.mit.edu	37	9	135083584	135083584	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156849054	156849054	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87332946	87332946	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87563601	87563601	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87635234	87635234	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88474545	88474545	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88483801	88483801	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88501990	88501990	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88548702	88548702	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88576293	88576293	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88693349	88693349	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88724463	88724463	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTSR2	23620	broad.mit.edu	37	2	11798449	11798449	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTSR2	23620	broad.mit.edu	37	2	11800230	11800230	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUAK1	9891	broad.mit.edu	37	12	106500286	106500286	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUFIP2	57532	broad.mit.edu	37	17	27613887	27613887	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMA1	4926	broad.mit.edu	37	11	71740117	71740117	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMB	8650	broad.mit.edu	37	14	73822214	73822214	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP133	55746	broad.mit.edu	37	1	229631713	229631713	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135307617	135307617	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP43	348995	broad.mit.edu	37	6	150064774	150064774	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP85	79902	broad.mit.edu	37	17	73230881	73230881	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP93	9688	broad.mit.edu	37	16	56871538	56871538	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUSAP1	51203	broad.mit.edu	37	15	41657777	41657777	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16899933	16899933	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF1	10482	broad.mit.edu	37	11	62571028	62571028	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101092727	101092727	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH1	30010	broad.mit.edu	37	7	8472666	8472666	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH2	11249	broad.mit.edu	37	2	139428571	139428571	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH2	11249	broad.mit.edu	37	2	139428608	139428608	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH2	11249	broad.mit.edu	37	2	139480020	139480021	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24878083	24878083	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24879320	24879320	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24880095	24880095	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS2	4939	broad.mit.edu	37	12	113432481	113432481	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBFC2A	64859	broad.mit.edu	37	2	192543284	192543284	+	5'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBP2B	29989	broad.mit.edu	37	9	136083606	136083606	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228503557	228503557	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228527605	228527605	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228565292	228565292	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28074595	28074595	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28211920	28211920	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCLM	10896	broad.mit.edu	37	1	186370202	186370202	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCLM	10896	broad.mit.edu	37	1	186370383	186370383	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCM2	4951	broad.mit.edu	37	7	97614248	97614248	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCM	654231	broad.mit.edu	37	7	5923802	5923802	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF3L1	161753	broad.mit.edu	37	15	76019289	76019289	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123517708	123517708	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123525850	123525850	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167066407	167066407	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167407296	167407296	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167463264	167463264	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167489293	167489293	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167529121	167529121	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167631330	167631330	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167641925	167641925	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167643788	167643788	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167671430	167671430	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167674989	167674989	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183635306	183635306	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183650131	183650131	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183658274	183658274	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78369524	78369524	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78780983	78780983	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78944460	78944460	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	79053528	79053528	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OFD1	8481	broad.mit.edu	37	X	13764409	13764409	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OFD1	8481	broad.mit.edu	37	X	13778751	13778751	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGFRL1	79627	broad.mit.edu	37	6	72011638	72011638	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGG1	4968	broad.mit.edu	37	3	9792631	9792631	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2A	169611	broad.mit.edu	37	9	127572311	127572311	+	Missense_Mutation	SNP	G	A	A	rs140626253	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML3	56944	broad.mit.edu	37	1	114522029	114522029	+	5'Flank	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML3	56944	broad.mit.edu	37	1	114524161	114524161	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLR1	4973	broad.mit.edu	37	12	10312443	10312443	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ONECUT2	9480	broad.mit.edu	37	18	55104035	55104035	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132302966	132302966	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132305854	132305854	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132305933	132305933	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132410897	132410897	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132470018	132470018	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132691644	132691644	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132693339	132693339	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132812753	132812753	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132830484	132830484	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	133052830	133052830	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	133160013	133160013	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67283936	67283936	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN4	94233	broad.mit.edu	37	10	88416013	88416013	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN5	221391	broad.mit.edu	37	6	47779386	47779386	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRD1	4985	broad.mit.edu	37	1	29185797	29185797	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRM1	4988	broad.mit.edu	37	6	154412236	154412236	+	Missense_Mutation	SNP	C	T	T	rs17174822	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRM1	4988	broad.mit.edu	37	6	154439662	154439662	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A2	341276	broad.mit.edu	37	11	6891839	6891839	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6867317	6867317	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G2	26534	broad.mit.edu	37	14	22102412	22102412	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G7	390265	broad.mit.edu	37	11	123909484	123909484	+	Silent	SNP	C	A	A	rs138227924		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H2	26538	broad.mit.edu	37	19	15839235	15839235	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H4	126541	broad.mit.edu	37	19	16059890	16059890	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H5	284433	broad.mit.edu	37	19	15905496	15905496	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J3	441911	broad.mit.edu	37	1	159284542	159284542	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K1	391109	broad.mit.edu	37	1	158436204	158436204	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158389908	158389908	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390136	158390136	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10P1	121130	broad.mit.edu	37	12	56030657	56030657	+	5'Flank	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10S1	219873	broad.mit.edu	37	11	123848537	123848537	+	5'Flank	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10V1	390201	broad.mit.edu	37	11	59481231	59481232	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11G2	390439	broad.mit.edu	37	14	20665805	20665805	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H6	122748	broad.mit.edu	37	14	20691979	20691979	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C2	392376	broad.mit.edu	37	9	107367580	107367580	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247835874	247835874	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1A1	8383	broad.mit.edu	37	17	3119443	3119443	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1B1	347169	broad.mit.edu	37	9	125391288	125391288	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1B1	347169	broad.mit.edu	37	9	125391866	125391866	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247920886	247920886	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1E2	8388	broad.mit.edu	37	17	3336584	3336584	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1I1	126370	broad.mit.edu	37	19	15198808	15198808	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1L6	392390	broad.mit.edu	37	9	125511845	125511845	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1N2	138882	broad.mit.edu	37	9	125316168	125316168	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S1	219959	broad.mit.edu	37	11	57982334	57982334	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S2	219958	broad.mit.edu	37	11	57970791	57970791	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B3	442184	broad.mit.edu	37	6	29054325	29054325	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F1	26211	broad.mit.edu	37	7	143657384	143657385	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F2	135948	broad.mit.edu	37	7	143633045	143633045	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G2	81470	broad.mit.edu	37	1	247752548	247752548	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G3	81469	broad.mit.edu	37	1	247769059	247769059	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G3	81469	broad.mit.edu	37	1	247769078	247769078	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G3	81469	broad.mit.edu	37	1	247769303	247769303	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248685107	248685107	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248685463	248685463	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2J3	442186	broad.mit.edu	37	6	29080006	29080006	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248099993	248099993	+	5'Flank	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248115452	248115452	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248153564	248153564	+	Intron	SNP	G	T	T	rs142469236	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248166527	248166527	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248186063	248186063	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248263072	248263072	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L3	391192	broad.mit.edu	37	1	248224541	248224541	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L8	391190	broad.mit.edu	37	1	248112717	248112717	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M1P	388762	broad.mit.edu	37	1	248285293	248285293	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248343189	248343189	+	5'Flank	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248343651	248343651	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248366333	248366333	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248366647	248366647	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248367108	248367108	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402462	248402462	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T1	26696	broad.mit.edu	37	1	248570337	248570337	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248550835	248550835	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W1	26692	broad.mit.edu	37	6	29012534	29012534	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W3	343171	broad.mit.edu	37	1	248059009	248059009	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W5	441932	broad.mit.edu	37	1	247654702	247654702	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2Y1	134083	broad.mit.edu	37	5	180166886	180166886	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR3A4	390756	broad.mit.edu	37	17	3213964	3213964	+	Silent	SNP	C	A	A	rs145453911	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55136147	55136147	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55136265	55136265	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55136271	55136271	+	Silent	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A16	81327	broad.mit.edu	37	11	55111453	55111453	+	Silent	SNP	C	T	T	rs79231280	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A47	403253	broad.mit.edu	37	11	48510568	48510568	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C12	283093	broad.mit.edu	37	11	50003201	50003201	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C12	283093	broad.mit.edu	37	11	50003744	50003744	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C12	283093	broad.mit.edu	37	11	50003863	50003863	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C3	256144	broad.mit.edu	37	11	48347428	48347428	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55432511	55432511	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D2	124538	broad.mit.edu	37	17	56247355	56247355	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D5	219875	broad.mit.edu	37	11	123810906	123810906	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4E2	26686	broad.mit.edu	37	14	22134197	22134197	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K15	81127	broad.mit.edu	37	14	20444296	20444296	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K17	390436	broad.mit.edu	37	14	20585586	20585586	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20387707	20387707	+	5'Flank	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20389640	20389640	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20248317	20248317	+	5'Flank	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20248670	20248670	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20248915	20248915	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20249016	20249016	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20295925	20295925	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22310762	22310762	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22319260	22319260	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22328605	22328605	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22335695	22335695	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22340354	22340354	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22350516	22350516	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22351031	22351031	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22363110	22363110	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22363112	22363112	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22364389	22364389	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22376532	22376532	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22383138	22383138	+	Silent	SNP	C	A	A	rs145480212	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20611880	20611880	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20612013	20612013	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4Q3	441669	broad.mit.edu	37	14	20212664	20212664	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4Q3	441669	broad.mit.edu	37	14	20214152	20214152	+	5'Flank	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4Q3	441669	broad.mit.edu	37	14	20216351	20216351	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B4	79339	broad.mit.edu	37	11	5322897	5322897	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5409055	5409055	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5410549	5410549	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5474606	5474606	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51D1	390038	broad.mit.edu	37	11	4661117	4661117	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51E1	143503	broad.mit.edu	37	11	4665870	4665870	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G1	79324	broad.mit.edu	37	11	4945559	4945559	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51I2	390064	broad.mit.edu	37	11	5474877	5474877	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51V1	283111	broad.mit.edu	37	11	5221133	5221133	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A4	390053	broad.mit.edu	37	11	5142859	5142859	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52K1	390036	broad.mit.edu	37	11	4509980	4509980	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52K1	390036	broad.mit.edu	37	11	4510679	4510679	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N2	390077	broad.mit.edu	37	11	5841866	5841866	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AC2	81050	broad.mit.edu	37	3	97806572	97806572	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AP2	338675	broad.mit.edu	37	11	56409188	56409188	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AS1	219447	broad.mit.edu	37	11	55798329	55798329	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AS1	219447	broad.mit.edu	37	11	55798664	55798664	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B21	219968	broad.mit.edu	37	11	58275240	58275240	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D13	390142	broad.mit.edu	37	11	55541412	55541412	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D13	390142	broad.mit.edu	37	11	55541613	55541613	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D16	390144	broad.mit.edu	37	11	55606395	55606396	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D16	390144	broad.mit.edu	37	11	55606547	55606547	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761807	55761807	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H2	79310	broad.mit.edu	37	3	98001903	98001903	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5I1	10798	broad.mit.edu	37	11	55703382	55703382	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5J2	282775	broad.mit.edu	37	11	55944611	55944611	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5J2	282775	broad.mit.edu	37	11	55944894	55944894	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L1	219437	broad.mit.edu	37	11	55579717	55579717	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55594667	55594667	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M10	390167	broad.mit.edu	37	11	56344651	56344651	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M9	390162	broad.mit.edu	37	11	56230560	56230560	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T1	390155	broad.mit.edu	37	11	56043691	56043691	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T2	219464	broad.mit.edu	37	11	56000231	56000231	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T3	390154	broad.mit.edu	37	11	56020091	56020091	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5W2	390148	broad.mit.edu	37	11	55681959	55681959	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C1	390321	broad.mit.edu	37	12	55715252	55715252	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C3	254786	broad.mit.edu	37	12	55725587	55725587	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C3	254786	broad.mit.edu	37	12	55725638	55725638	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C68	403284	broad.mit.edu	37	12	55886799	55886799	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C68	403284	broad.mit.edu	37	12	55887043	55887043	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C75	390323	broad.mit.edu	37	12	55759174	55759174	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C76	390326	broad.mit.edu	37	12	55820397	55820397	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K3	391114	broad.mit.edu	37	1	158687131	158687131	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N2	81442	broad.mit.edu	37	1	158746545	158746545	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158517482	158517482	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A5	26659	broad.mit.edu	37	19	14938364	14938364	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7C1	26664	broad.mit.edu	37	19	14910548	14910548	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7C2	26658	broad.mit.edu	37	19	15052238	15052238	+	5'Flank	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7E5P	219445	broad.mit.edu	37	11	55747292	55747292	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G2	390882	broad.mit.edu	37	19	9213144	9213144	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55872411	55872411	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K3	219473	broad.mit.edu	37	11	56086192	56086192	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G4	283189	broad.mit.edu	37	11	56511219	56511219	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G9	504191	broad.mit.edu	37	11	56468742	56468742	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9I1	219954	broad.mit.edu	37	11	57885982	57885982	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9I1	219954	broad.mit.edu	37	11	57886033	57886033	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9I1	219954	broad.mit.edu	37	11	57886573	57886573	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9K2	441639	broad.mit.edu	37	12	55524038	55524038	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57934270	57934270	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57946994	57946994	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57947584	57947584	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC2L	4999	broad.mit.edu	37	2	201800520	201800520	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL10	114884	broad.mit.edu	37	3	31794586	31794586	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL10	114884	broad.mit.edu	37	3	31936915	31936915	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24911691	24911691	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL6	114880	broad.mit.edu	37	2	179197327	179197327	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBP	5007	broad.mit.edu	37	11	59361863	59361863	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSCAR	126014	broad.mit.edu	37	19	54603181	54603181	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSCAR	126014	broad.mit.edu	37	19	54606023	54606023	+	5'Flank	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSGEPL1	64172	broad.mit.edu	37	2	190619989	190619989	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSR2	116039	broad.mit.edu	37	8	99961477	99961477	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSTM1	28962	broad.mit.edu	37	6	108372344	108372344	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP1	133060	broad.mit.edu	37	4	4190628	4190628	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOR	56914	broad.mit.edu	37	20	16729505	16729505	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD4	54726	broad.mit.edu	37	4	146063380	146063380	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7B	56957	broad.mit.edu	37	1	149921119	149921119	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29583673	29583673	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29625924	29625924	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29630261	29630261	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29649067	29649067	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH2	341277	broad.mit.edu	37	11	7721932	7721932	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH2	341277	broad.mit.edu	37	11	7722922	7722922	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXCT1	5019	broad.mit.edu	37	5	41794748	41794748	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXCT1	5019	broad.mit.edu	37	5	41834602	41834603	+	Intron	INS	-	C	C	rs72746965	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXR1	55074	broad.mit.edu	37	8	107754582	107754582	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXSR1	9943	broad.mit.edu	37	3	38294394	38294394	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA2	8974	broad.mit.edu	37	5	131539500	131539500	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA2	8974	broad.mit.edu	37	5	131553104	131553104	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA3	283208	broad.mit.edu	37	11	74000119	74000119	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1L	80336	broad.mit.edu	37	20	43541271	43541271	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1L	80336	broad.mit.edu	37	20	43558917	43558917	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1P2	728773	broad.mit.edu	37	2	147345682	147345682	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1	26986	broad.mit.edu	37	8	101730197	101730197	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163695257	163695257	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACS1	55690	broad.mit.edu	37	11	65998365	65998365	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACSIN3	29763	broad.mit.edu	37	11	47203976	47203976	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17555386	17555386	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI3	51702	broad.mit.edu	37	1	17601181	17601181	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17680942	17680942	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17682564	17682564	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17690003	17690003	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAG1	55824	broad.mit.edu	37	8	81888954	81888954	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE5	90737	broad.mit.edu	37	X	55247767	55247767	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE5	90737	broad.mit.edu	37	X	55248301	55248301	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAIP2B	400961	broad.mit.edu	37	2	71417203	71417203	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK1	5058	broad.mit.edu	37	11	77070048	77070048	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112686274	112686274	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALMD	54873	broad.mit.edu	37	1	100155365	100155365	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAMR1	25891	broad.mit.edu	37	11	35505539	35505539	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAN2	9924	broad.mit.edu	37	12	56717783	56717783	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANK1	53354	broad.mit.edu	37	10	91352363	91352363	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANX1	24145	broad.mit.edu	37	11	93912879	93912879	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAOX	196743	broad.mit.edu	37	10	135202325	135202359	+	Intron	DEL	GTCATCCCGGGGCTCTCTTTCTCCATGCAGGTCTG	-	-	rs144417516	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPL	390928	broad.mit.edu	37	19	39600867	39600867	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLA	10914	broad.mit.edu	37	14	96998700	96998700	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLG	64895	broad.mit.edu	37	2	60995506	60995506	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176526166	176526166	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176585189	176585189	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176760739	176760739	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176769155	176769155	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176769183	176769183	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176769233	176769233	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176788721	176788721	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPSS2	9060	broad.mit.edu	37	10	89469183	89469183	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR3	152559	broad.mit.edu	37	4	79856274	79856274	+	Splice_Site	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25446528	25446528	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206050393	206050393	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206166423	206166423	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3	56288	broad.mit.edu	37	10	34635247	34635247	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161832921	161832921	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161970054	161970054	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161973491	161973491	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162030744	162030744	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162037323	162037323	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162223764	162223764	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162869168	162869168	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162990916	162990916	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARM1	25849	broad.mit.edu	37	4	75937503	75937503	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARN	5073	broad.mit.edu	37	16	14576590	14576590	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP11	57097	broad.mit.edu	37	12	3938052	3938052	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP11	57097	broad.mit.edu	37	12	3938965	3938965	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP14	54625	broad.mit.edu	37	3	122432201	122432201	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226590109	226590109	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP8	79668	broad.mit.edu	37	5	50090165	50090165	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP8	79668	broad.mit.edu	37	5	50117170	50117170	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARS2	25973	broad.mit.edu	37	1	55224317	55224317	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVB	29780	broad.mit.edu	37	22	44535804	44535804	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242076536	242076536	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATE2	399967	broad.mit.edu	37	11	125648606	125648606	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102526579	102526579	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102583282	102583282	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX3	5077	broad.mit.edu	37	2	223084955	223084955	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX4	5078	broad.mit.edu	37	7	127253789	127253789	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX4	5078	broad.mit.edu	37	7	127255363	127255363	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52662900	52662900	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX4	80714	broad.mit.edu	37	19	19680275	19680275	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBXIP1	57326	broad.mit.edu	37	1	154919082	154919082	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBXIP1	57326	broad.mit.edu	37	1	154926265	154926265	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCA	5095	broad.mit.edu	37	13	101070550	101070550	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCA	5095	broad.mit.edu	37	13	101126695	101126696	+	Intron	DEL	TC	-	-	rs144096116		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91090765	91090765	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91133250	91133250	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91133253	91133253	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91873626	91873626	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH12	51294	broad.mit.edu	37	5	141325203	141325203	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55581965	55581965	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55955422	55955422	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56129003	56129003	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56269139	56269139	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56359672	56359672	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56360684	56360684	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56416325	56416326	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56416496	56416496	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207066	58207066	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207348	58207348	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207777	58207777	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58298838	58298838	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99551726	99551726	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH20	64881	broad.mit.edu	37	13	61987879	61987879	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH8	5100	broad.mit.edu	37	13	53422150	53422150	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67205351	67205351	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140250468	140250468	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140263698	140263698	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140166187	140166187	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140167097	140167097	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA5	56143	broad.mit.edu	37	5	140203776	140203776	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA6	56142	broad.mit.edu	37	5	140208439	140208439	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140214162	140214162	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140222248	140222248	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHAC2	56134	broad.mit.edu	37	5	140348981	140348981	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140603050	140603050	+	5'Flank	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140605066	140605066	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB15	56121	broad.mit.edu	37	5	140626793	140626793	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB18	54660	broad.mit.edu	37	5	140616274	140616274	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140481763	140481763	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140502962	140502962	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB5	26167	broad.mit.edu	37	5	140515358	140515358	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140552404	140552404	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140552680	140552680	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140559229	140559229	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA10	56106	broad.mit.edu	37	5	140864677	140864678	+	Intron	INS	-	G	G	rs145099347	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA12	26025	broad.mit.edu	37	5	140811613	140811613	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140719148	140719148	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140725438	140725438	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA6	56109	broad.mit.edu	37	5	140754020	140754020	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA6	56109	broad.mit.edu	37	5	140755818	140755818	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB2	56103	broad.mit.edu	37	5	140739827	140739827	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB2	56103	broad.mit.edu	37	5	140740768	140740768	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB6	56100	broad.mit.edu	37	5	140787978	140787978	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82389931	82389931	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82456010	82456010	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82579666	82579666	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82584629	82584629	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82584925	82584925	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCM1	5108	broad.mit.edu	37	8	17871617	17871617	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233134101	233134101	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL3	399909	broad.mit.edu	37	11	65387817	65387818	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK4	54760	broad.mit.edu	37	19	1486857	1486857	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78784490	78784490	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT1B	9468	broad.mit.edu	37	X	24580058	24580058	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT1B	9468	broad.mit.edu	37	X	24580306	24580306	+	3'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105198552	105198552	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD1LG2	80380	broad.mit.edu	37	9	5534897	5534897	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD1LG2	80380	broad.mit.edu	37	9	5563067	5563067	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD4	27250	broad.mit.edu	37	10	112653952	112653952	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD6	10016	broad.mit.edu	37	5	272909	272909	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD6	10016	broad.mit.edu	37	5	289656	289656	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165842072	165842072	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178684815	178684815	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178704947	178704947	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178705137	178705137	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178939678	178939678	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183356119	183356119	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1B	5153	broad.mit.edu	37	12	54943610	54943610	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1B	5153	broad.mit.edu	37	12	54967079	54967079	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1B	5153	broad.mit.edu	37	12	54967640	54967641	+	Intron	INS	-	GA	GA	rs142403478	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1B	5153	broad.mit.edu	37	12	54969156	54969156	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31793148	31793148	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31862978	31862978	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31864539	31864539	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	32037859	32037859	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	32252192	32252192	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72291877	72291877	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72296672	72296672	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20705545	20705545	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14810521	14810521	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14810622	14810622	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14856571	14856571	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4A	5141	broad.mit.edu	37	19	10559756	10559756	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66667271	66667271	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144857518	144857518	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145002719	145002719	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145021772	145021772	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	58476383	58476383	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	59756474	59756474	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149324063	149324063	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6B	5158	broad.mit.edu	37	4	619536	619536	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6B	5158	broad.mit.edu	37	4	628458	628458	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6B	5158	broad.mit.edu	37	4	629765	629765	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95422264	95422264	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7B	27115	broad.mit.edu	37	6	136291585	136291586	+	Intron	INS	-	TCC	TCC	rs111762075		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7B	27115	broad.mit.edu	37	6	136409615	136409615	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7B	27115	broad.mit.edu	37	6	136429780	136429780	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE8A	5151	broad.mit.edu	37	15	85626803	85626803	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFD	80310	broad.mit.edu	37	11	103780540	103780540	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFD	80310	broad.mit.edu	37	11	103780824	103780827	+	Intron	DEL	ATTA	-	-	rs147588016		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54530059	54530059	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54655047	54655047	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRB	5159	broad.mit.edu	37	5	149515317	149515317	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA2	5161	broad.mit.edu	37	4	96761292	96761292	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHX	8050	broad.mit.edu	37	11	34988231	34988231	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA2	64714	broad.mit.edu	37	16	332393	332393	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA5	10954	broad.mit.edu	37	3	122869526	122869526	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDK3	5165	broad.mit.edu	37	X	24546235	24546235	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM3	27295	broad.mit.edu	37	4	186423597	186423597	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM4	8572	broad.mit.edu	37	5	131606652	131606652	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDP2	57546	broad.mit.edu	37	16	66918447	66918447	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPK1	5170	broad.mit.edu	37	16	2607912	2607912	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPN	10630	broad.mit.edu	37	1	13937031	13937031	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39851087	39851087	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDYN	5173	broad.mit.edu	37	20	1961358	1961358	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31799691	31799691	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31995642	31995642	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73437067	73437067	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73440205	73440205	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEBP4	157310	broad.mit.edu	37	8	22578409	22578409	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEBP4	157310	broad.mit.edu	37	8	22767193	22767193	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEBP4	157310	broad.mit.edu	37	8	22770927	22770927	+	Intron	SNP	C	G	G	rs145097197	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57327366	57327366	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER1	5187	broad.mit.edu	37	17	8045938	8045938	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239160465	239160465	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PET112L	5188	broad.mit.edu	37	4	152637931	152637931	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX14	5195	broad.mit.edu	37	1	10617892	10617892	+	Intron	DEL	T	-	-	rs113068415		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX2	5828	broad.mit.edu	37	8	77896573	77896573	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5L	51555	broad.mit.edu	37	3	179526053	179526053	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5L	51555	broad.mit.edu	37	3	179597885	179597885	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFDN5	5204	broad.mit.edu	37	12	53693169	53693169	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB1	5207	broad.mit.edu	37	X	54960388	54960388	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB1	5207	broad.mit.edu	37	X	54982667	54982667	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKM	5213	broad.mit.edu	37	12	48522805	48522805	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKM	5213	broad.mit.edu	37	12	48538854	48538854	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKP	5214	broad.mit.edu	37	10	3141601	3141601	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230468654	230468654	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	97795191	97795191	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGD	5226	broad.mit.edu	37	1	10473253	10473253	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGD	5226	broad.mit.edu	37	1	10479637	10479637	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGGT1B	5229	broad.mit.edu	37	5	114577198	114577198	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP4	57115	broad.mit.edu	37	1	153310878	153310878	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP4	57115	broad.mit.edu	37	1	153312843	153312843	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5P2	595135	broad.mit.edu	37	9	69127095	69127095	+	RNA	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5	5239	broad.mit.edu	37	9	71144473	71144473	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100962660	100962660	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR1	221692	broad.mit.edu	37	6	12718972	12718972	+	5'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR1	221692	broad.mit.edu	37	6	12803770	12803770	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58260786	58260786	+	Intron	SNP	G	C	C	rs140626570	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58318056	58318056	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58381038	58381038	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHC2	1912	broad.mit.edu	37	1	33794655	33794655	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11022816	11022816	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11045893	11045893	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF17	79960	broad.mit.edu	37	4	129764032	129764032	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20	51230	broad.mit.edu	37	20	34501842	34501842	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF3	23469	broad.mit.edu	37	6	64422495	64422495	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF6	84295	broad.mit.edu	37	X	133549266	133549266	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHGDH	26227	broad.mit.edu	37	1	120279974	120279974	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA2	5256	broad.mit.edu	37	X	18959947	18959947	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHOX2B	8929	broad.mit.edu	37	4	41749393	41749393	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHTF2	57157	broad.mit.edu	37	7	77469443	77469443	+	5'Flank	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHTF2	57157	broad.mit.edu	37	7	77578943	77578943	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KA	5297	broad.mit.edu	37	22	21087998	21087998	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PICALM	8301	broad.mit.edu	37	11	85718543	85718543	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGK	10026	broad.mit.edu	37	1	77661148	77661148	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98357076	98357076	+	Intron	SNP	C	T	T	rs66650606		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204400625	204400625	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18587589	18587590	+	Intron	DEL	TA	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18701280	18701280	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106509636	106509636	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106521523	106521524	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209182706	209182706	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209191144	209191144	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRB	29990	broad.mit.edu	37	7	99951101	99951101	+	5'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIM2	11040	broad.mit.edu	37	X	48772672	48772672	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PION	54103	broad.mit.edu	37	7	77012025	77012025	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNM3	83394	broad.mit.edu	37	17	6367111	6367111	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITRM1	10531	broad.mit.edu	37	10	3212375	3212375	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130831604	130831604	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47840434	47840434	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47879177	47879177	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47942155	47942155	+	Intron	SNP	C	A	A	rs75294716	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47968929	47968929	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81146042	81146042	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81167419	81167419	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81171045	81171045	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81204694	81204694	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110456009	110456009	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110466367	110466367	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110508994	110508994	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110509228	110509228	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110522855	110522855	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51483871	51483871	+	3'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51799150	51799150	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKIA	5569	broad.mit.edu	37	8	79483847	79483847	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKIG	11142	broad.mit.edu	37	20	43240161	43240162	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKIG	11142	broad.mit.edu	37	20	43243376	43243376	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKLR	5313	broad.mit.edu	37	1	155265545	155265545	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN2	5586	broad.mit.edu	37	1	89250387	89250387	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125216747	125216747	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125299719	125299719	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125302146	125302147	+	3'UTR	INS	-	T	T	rs142631527	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2A	5320	broad.mit.edu	37	1	20303491	20303491	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2D	26279	broad.mit.edu	37	1	20441963	20441963	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186876175	186876175	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186916013	186916013	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186925348	186925348	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186934782	186934782	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186948396	186948396	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186948409	186948409	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160806217	160806217	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160813101	160813101	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160813135	160813135	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160813153	160813153	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59812175	59812175	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAG1	5324	broad.mit.edu	37	8	57078967	57078967	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAUR	5329	broad.mit.edu	37	19	44174298	44174298	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB2	5330	broad.mit.edu	37	15	40589233	40589233	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB2	5330	broad.mit.edu	37	15	40591413	40591414	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9263139	9263139	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9368094	9368094	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	95966751	95966751	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96018805	96018805	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG1	5335	broad.mit.edu	37	20	39790522	39790522	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG1	5335	broad.mit.edu	37	20	39797825	39797825	+	Intron	SNP	G	C	C	rs35010470		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81942046	81942046	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155282834	155282834	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155301124	155301124	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155301142	155301142	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198838993	198838993	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198841299	198841299	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198949322	198949322	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198949433	198949433	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198949519	198949519	+	Silent	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198950124	198950124	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198950365	198950365	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198953474	198953474	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17034009	17034009	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18889838	18889839	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLDN	26258	broad.mit.edu	37	15	45897586	45897586	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLDN	26258	broad.mit.edu	37	15	45897601	45897601	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144991466	144991466	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEK2	26499	broad.mit.edu	37	14	67862071	67862071	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA1	59338	broad.mit.edu	37	10	124159762	124159762	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16834758	16834758	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA8	84725	broad.mit.edu	37	7	30085801	30085801	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA8	84725	broad.mit.edu	37	7	30118307	30118307	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB1	58473	broad.mit.edu	37	11	73372606	73372606	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131954998	131954998	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132044885	132044885	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG2	64857	broad.mit.edu	37	19	39914598	39914598	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG3	26030	broad.mit.edu	37	14	65197269	65197269	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH1	57475	broad.mit.edu	37	14	68046582	68046582	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM1	9842	broad.mit.edu	37	17	43551825	43551825	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEK	5341	broad.mit.edu	37	2	68615475	68615475	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161159709	161159710	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161162463	161162463	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN1	5346	broad.mit.edu	37	15	90210328	90210328	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN1	5346	broad.mit.edu	37	15	90210688	90210688	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK1S1	55857	broad.mit.edu	37	20	21143196	21143196	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK1S1	55857	broad.mit.edu	37	20	21143844	21143844	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD3	8985	broad.mit.edu	37	7	100856047	100856047	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLS3	5358	broad.mit.edu	37	X	114863488	114863488	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR2	57047	broad.mit.edu	37	3	146201828	146201828	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR4	57088	broad.mit.edu	37	3	145912811	145912811	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20300194	20300194	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20435239	20435240	+	Intron	INS	-	T	T	rs142107824	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20465878	20465878	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20506404	20506404	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20511930	20511930	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126708358	126708358	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126722193	126722193	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126739037	126739037	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208233863	208233863	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208233871	208233871	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208272429	208272429	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208296759	208296759	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131832783	131832783	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131850022	131850022	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131864788	131864788	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131887591	131887591	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	132192245	132192245	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	132193253	132193253	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PM20D1	148811	broad.mit.edu	37	1	205818813	205818813	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PML	5371	broad.mit.edu	37	15	74290568	74290568	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2CL	441194	broad.mit.edu	37	7	6760457	6760457	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L1	5379	broad.mit.edu	37	7	99930148	99930148	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118231267	118231267	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNMA2	10687	broad.mit.edu	37	8	26366261	26366261	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNMAL1	55228	broad.mit.edu	37	19	46973479	46973479	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PODXL2	50512	broad.mit.edu	37	3	127390196	127390196	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POGZ	23126	broad.mit.edu	37	1	151400443	151400443	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA2	23649	broad.mit.edu	37	11	65048481	65048481	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA2	23649	broad.mit.edu	37	11	65064706	65064706	+	Missense_Mutation	SNP	G	T	T	rs7123885	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLB	5423	broad.mit.edu	37	8	42207682	42207682	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD1	5424	broad.mit.edu	37	19	50902078	50902078	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE3	54107	broad.mit.edu	37	9	116171803	116171803	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLG2	11232	broad.mit.edu	37	17	62492735	62492735	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLH	5429	broad.mit.edu	37	6	43572524	43572525	+	Intron	DNP	GG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2C	5432	broad.mit.edu	37	16	57504192	57504192	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2H	5437	broad.mit.edu	37	3	184083032	184083032	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53103125	53103125	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53104205	53104205	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L2	94026	broad.mit.edu	37	6	27277865	27277865	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121	9883	broad.mit.edu	37	7	72397654	72397654	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMT2	29954	broad.mit.edu	37	14	77744999	77744999	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PON1	5444	broad.mit.edu	37	7	95024020	95024020	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POPDC3	64208	broad.mit.edu	37	6	105606629	105606629	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POR	5447	broad.mit.edu	37	7	75552101	75552101	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38160149	38160149	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43211974	43211974	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	131984435	131984435	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130862249	130862249	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19563531	19563531	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19566127	19566127	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2AF1	5450	broad.mit.edu	37	11	111225781	111225781	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2AF1	5450	broad.mit.edu	37	11	111226040	111226040	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F1	5451	broad.mit.edu	37	1	167315136	167315136	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F3	25833	broad.mit.edu	37	11	120131852	120131852	+	Intron	DEL	T	-	-	rs11306771		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F3	25833	broad.mit.edu	37	11	120188339	120188339	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU3F2	5454	broad.mit.edu	37	6	99284136	99284136	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAN-P2RY11	692312	broad.mit.edu	37	19	10218214	10218214	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAN-P2RY11	692312	broad.mit.edu	37	19	10218681	10218681	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAP2C	8612	broad.mit.edu	37	19	282141	282141	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23803939	23803939	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23815429	23815429	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81789700	81789700	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81953859	81953859	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	82147948	82147948	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA3	8541	broad.mit.edu	37	19	49649311	49649311	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203015032	203015032	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203029682	203029682	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP1	8496	broad.mit.edu	37	12	27827253	27827253	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIA	5478	broad.mit.edu	37	7	44840805	44840805	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1G	5496	broad.mit.edu	37	2	27604918	27604918	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160530504	160530504	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160552271	160552271	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160704015	160704015	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1CC	5501	broad.mit.edu	37	12	111162369	111162369	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202391820	202391820	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202407883	202407883	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R15A	23645	broad.mit.edu	37	19	49378904	49378904	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37535753	37535753	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37546646	37546646	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1A	5502	broad.mit.edu	37	12	54974907	54974907	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1A	5502	broad.mit.edu	37	12	54976577	54976577	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182850924	182850924	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R2	5504	broad.mit.edu	37	3	195250459	195250459	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3A	5506	broad.mit.edu	37	7	113518804	113518804	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2A	5520	broad.mit.edu	37	8	25441265	25441265	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146006248	146006248	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146137074	146137074	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CC	5533	broad.mit.edu	37	8	22355572	22355572	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R1	9989	broad.mit.edu	37	18	9547750	9547750	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94710940	94710940	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPT2	9374	broad.mit.edu	37	6	32123280	32123280	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPYR1	5540	broad.mit.edu	37	10	47084533	47084533	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PQLC2	54896	broad.mit.edu	37	1	19644518	19644518	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF12	390999	broad.mit.edu	37	1	12837073	12837073	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB2	653247	broad.mit.edu	37	12	11548599	11548599	+	5'Flank	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11201907	11201907	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11462214	11462214	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM11	56981	broad.mit.edu	37	11	45124847	45124847	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM11	56981	broad.mit.edu	37	11	45143753	45143754	+	Intron	INS	-	AC	AC	rs2021225		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM7	11105	broad.mit.edu	37	16	90124313	90124313	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23509511	23509511	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRELP	5549	broad.mit.edu	37	1	203453258	203453258	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47244251	47244251	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47256470	47256470	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47258696	47258696	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47266655	47266656	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47274840	47274840	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47309257	47309257	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47315661	47315661	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68939376	68939376	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69046447	69046447	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69136980	69136980	+	Intron	SNP	C	A	A	rs143449178	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE2	166336	broad.mit.edu	37	3	64184728	64184728	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE3	4007	broad.mit.edu	37	X	49034420	49034420	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57327689	57327690	+	Intron	INS	-	A	A	rs142591900	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57334082	57334082	+	Intron	DEL	G	-	-	rs11320788		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57347387	57347388	+	Intron	DEL	TG	-	-	rs66682655		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57358075	57358076	+	Intron	INS	-	TC	TC	rs147835952	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57373874	57373874	+	Intron	DEL	C	-	-	rs113195192		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57384649	57384649	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57388617	57388617	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57394592	57394595	+	Intron	DEL	AATA	-	-	rs66604840		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57398118	57398119	+	Intron	INS	-	T	T	rs147643173		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57420440	57420440	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57430122	57430122	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57438418	57438418	+	Intron	DEL	T	-	-	rs66509138		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57456621	57456621	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57457703	57457704	+	Intron	INS	-	G	G	rs146176331		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57477782	57477782	+	Intron	SNP	T	G	G	rs141045626	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57500553	57500553	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57502183	57502186	+	Intron	DEL	GAGA	-	-	rs113607514		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57507457	57507457	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57507952	57507952	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57509429	57509429	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57512353	57512353	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAA1	5562	broad.mit.edu	37	5	40798243	40798243	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKACB	5567	broad.mit.edu	37	1	84668568	84668568	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR1B	5575	broad.mit.edu	37	7	645927	645927	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR2B	5577	broad.mit.edu	37	7	106800054	106800054	+	3'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	23876366	23876366	+	Intron	SNP	T	C	C	rs117930376	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24046662	24046662	+	Intron	SNP	C	G	G	rs112842992		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24180633	24180633	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24196450	24196450	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCE	5581	broad.mit.edu	37	2	46315319	46315319	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCQ	5588	broad.mit.edu	37	10	6498683	6498683	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30324440	30324440	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30346066	30346066	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48743158	48743158	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIR	5612	broad.mit.edu	37	11	76066548	76066548	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLHR	2834	broad.mit.edu	37	10	120354228	120354228	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35086169	35086169	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRL	5617	broad.mit.edu	37	6	22287778	22287778	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT2	3275	broad.mit.edu	37	21	48063640	48063640	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT7	54496	broad.mit.edu	37	16	68349919	68349919	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3667375	3667375	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3692094	3692094	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROL1	58503	broad.mit.edu	37	4	71275470	71275470	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM2	150696	broad.mit.edu	37	2	95946936	95946936	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROX2	283571	broad.mit.edu	37	14	75329253	75329253	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF18	8559	broad.mit.edu	37	10	13628907	13628907	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF4B	8899	broad.mit.edu	37	6	4056595	4056595	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPS2	5634	broad.mit.edu	37	X	12817486	12817486	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR11	55771	broad.mit.edu	37	17	57256024	57256024	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR11	55771	broad.mit.edu	37	17	57257096	57257096	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR16	51334	broad.mit.edu	37	5	120021572	120021572	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR16	51334	broad.mit.edu	37	5	120022351	120022351	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR21	643905	broad.mit.edu	37	2	240981395	240981395	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRG1	5638	broad.mit.edu	37	X	37265373	37265373	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRX1	5396	broad.mit.edu	37	1	170656029	170656029	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS12	8492	broad.mit.edu	37	4	119234252	119234252	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142460644	142460644	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142460763	142460763	+	Silent	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS23	11098	broad.mit.edu	37	11	86519020	86519020	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS36	146547	broad.mit.edu	37	16	31155228	31155229	+	Intron	DNP	TT	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS38	339501	broad.mit.edu	37	1	228033623	228033623	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10396302	10396302	+	Nonstop_Mutation	SNP	G	C	C	rs112308687		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79323987	79323987	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79328503	79328503	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE	58497	broad.mit.edu	37	1	150990687	150990687	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE	58497	broad.mit.edu	37	1	150997137	150997137	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD3	23362	broad.mit.edu	37	8	18583460	18583460	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSEN2	5664	broad.mit.edu	37	1	227077837	227077837	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43375199	43375199	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43380594	43380595	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG2	5670	broad.mit.edu	37	19	43575865	43575865	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG2	5670	broad.mit.edu	37	19	43575872	43575872	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43242948	43242948	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43244430	43244430	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43594170	43594170	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43433783	43433783	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43266869	43266869	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43268390	43268390	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43330780	43330780	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43762557	43762557	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43762590	43762590	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43762592	43762592	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43770735	43770735	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA5	5686	broad.mit.edu	37	1	109955772	109955772	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA8	143471	broad.mit.edu	37	18	23751236	23751236	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD1	5707	broad.mit.edu	37	2	231947621	231947622	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD3	5709	broad.mit.edu	37	17	38146289	38146289	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME4	23198	broad.mit.edu	37	2	54148067	54148067	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME4	23198	broad.mit.edu	37	2	54150541	54150541	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSORS1C2	170680	broad.mit.edu	37	6	31106829	31106829	+	5'UTR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTAR1	375743	broad.mit.edu	37	9	72347217	72347217	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP2	58155	broad.mit.edu	37	1	97272119	97272119	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH1	5727	broad.mit.edu	37	9	98241507	98241507	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11583992	11583992	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11586667	11586667	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD3	374308	broad.mit.edu	37	10	27692304	27692304	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCRA	171558	broad.mit.edu	37	6	42883813	42883813	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTDSS1	9791	broad.mit.edu	37	8	97285519	97285519	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTEN	5728	broad.mit.edu	37	10	89685269	89685269	+	Splice_Site	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTEN	5728	broad.mit.edu	37	10	89692790	89692790	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTER	9317	broad.mit.edu	37	10	16528617	16528617	+	Splice_Site	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGES3	10728	broad.mit.edu	37	12	57066595	57066595	+	Splice_Site	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIR	5739	broad.mit.edu	37	19	47127354	47127354	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIS	5740	broad.mit.edu	37	20	48129564	48129564	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGR1	22949	broad.mit.edu	37	9	114336950	114336950	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS1	5742	broad.mit.edu	37	9	125148998	125148998	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS1	5742	broad.mit.edu	37	9	125154487	125154487	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH1R	5745	broad.mit.edu	37	3	46939695	46939695	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27260458	27260458	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2	5747	broad.mit.edu	37	8	141696760	141696760	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPLAD2	401494	broad.mit.edu	37	9	21020233	21020234	+	Intron	DEL	AC	-	-	rs139542870		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214545864	214545864	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214557669	214557669	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214576226	214576226	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214576367	214576367	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN22	26191	broad.mit.edu	37	1	114381267	114381267	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN22	26191	broad.mit.edu	37	1	114397253	114397253	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN3	5774	broad.mit.edu	37	9	112160485	112160485	+	Intron	SNP	C	A	A	rs140107725	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN4	5775	broad.mit.edu	37	2	120709587	120709587	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN6	5777	broad.mit.edu	37	12	7065802	7065802	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70931886	70931887	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198608396	198608396	+	5'UTR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198665779	198665779	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198718811	198718811	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198721222	198721222	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	10513897	10513897	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8317934	8317934	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8337795	8337795	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8340502	8340502	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8346978	8346978	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8370814	8370814	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8470875	8470875	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8484156	8484156	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8485850	8485850	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8494004	8494007	+	Intron	DEL	ACAG	-	-	rs34072641		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8499814	8499814	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8499918	8499918	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8500792	8500792	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8636910	8636910	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8990542	8990542	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8998117	8998117	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	9021412	9021412	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	9023191	9023191	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	9542256	9542256	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRF	5792	broad.mit.edu	37	1	44084190	44084190	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	62022974	62022975	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55698887	55698887	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48161374	48161374	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128327087	128327087	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128329214	128329214	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128330150	128330150	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128643579	128643579	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157341636	157341636	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157848557	157848558	+	Intron	INS	-	TG	TG	rs34708688		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157874037	157874037	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	158039939	158039939	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220161477	220161477	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220162880	220162880	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220168633	220168633	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15585407	15585407	+	Intron	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15668395	15668395	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71105971	71105971	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRS	5802	broad.mit.edu	37	19	5207892	5207892	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRS	5802	broad.mit.edu	37	19	5239041	5239041	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40727285	40727285	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40743803	40743803	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40766323	40766323	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40789862	40789862	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40789875	40789875	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40935011	40935011	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40938718	40938718	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41371091	41371091	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29581988	29581988	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29649658	29649658	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM2	23369	broad.mit.edu	37	2	20458167	20458167	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM2	23369	broad.mit.edu	37	2	20512215	20512215	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7L	83448	broad.mit.edu	37	12	44136171	44136171	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7	54517	broad.mit.edu	37	7	105099703	105099703	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL3	25945	broad.mit.edu	37	3	110853127	110853127	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL4	81607	broad.mit.edu	37	1	161042763	161042763	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PWRN1	791114	broad.mit.edu	37	15	24798649	24798649	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52323922	52323922	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52567337	52567337	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXK	54899	broad.mit.edu	37	3	58395910	58395910	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXMP2	5827	broad.mit.edu	37	12	133277869	133277870	+	Frame_Shift_Ins	INS	-	G	G	rs141115887	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGL	5836	broad.mit.edu	37	14	51382319	51382319	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGM	5837	broad.mit.edu	37	11	64526051	64526051	+	Intron	SNP	C	A	A	rs149330285	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGO2	90780	broad.mit.edu	37	1	154931577	154931577	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158913695	158913695	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9310997	9310997	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9315314	9315314	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9344805	9344805	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QDPR	5860	broad.mit.edu	37	4	17510984	17510984	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QKI	9444	broad.mit.edu	37	6	163987676	163987676	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRICH1	54870	broad.mit.edu	37	3	49081739	49081739	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSER1	79832	broad.mit.edu	37	11	32996928	32996928	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSOX1	5768	broad.mit.edu	37	1	180163465	180163465	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11A	8766	broad.mit.edu	37	15	66180198	66180198	+	3'UTR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP2	22841	broad.mit.edu	37	10	119805345	119805345	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP3	9727	broad.mit.edu	37	16	502650	502650	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP4	84440	broad.mit.edu	37	17	29759037	29759037	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP5	26056	broad.mit.edu	37	2	73316238	73316238	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB17	64284	broad.mit.edu	37	2	238494768	238494768	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB27B	5874	broad.mit.edu	37	18	52544718	52544718	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB27B	5874	broad.mit.edu	37	18	52552215	52552215	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB30	27314	broad.mit.edu	37	11	82693360	82693360	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB30	27314	broad.mit.edu	37	11	82708265	82708266	+	Splice_Site	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3C	115827	broad.mit.edu	37	5	58120738	58120738	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB40AL	282808	broad.mit.edu	37	X	102192661	102192661	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB43	339122	broad.mit.edu	37	3	128877199	128877199	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB5C	5878	broad.mit.edu	37	17	40280746	40280746	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB6C	84084	broad.mit.edu	37	2	130738129	130738129	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB7L1	8934	broad.mit.edu	37	1	205739262	205739262	+	3'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174790161	174790161	+	Intron	DEL	A	-	-	rs72021518		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGEF1	27342	broad.mit.edu	37	7	66264294	66264294	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGGTA	5875	broad.mit.edu	37	14	24738528	24738528	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1P	83956	broad.mit.edu	37	12	45461862	45461862	+	5'Flank	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD1	5810	broad.mit.edu	37	5	34911771	34911771	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD23B	5887	broad.mit.edu	37	9	110086365	110086365	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD23B	5887	broad.mit.edu	37	9	110087176	110087176	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP1	10635	broad.mit.edu	37	12	4658143	4658143	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L1	5890	broad.mit.edu	37	14	68934973	68934973	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L1	5890	broad.mit.edu	37	14	69151658	69151659	+	Intron	INS	-	CCTTCCTTCCTT	CCTTCCTTCCTT	rs35395138		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L3	5892	broad.mit.edu	37	17	33442259	33442259	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51	5888	broad.mit.edu	37	15	41023425	41023425	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAF1	5894	broad.mit.edu	37	3	12641797	12641797	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1	5896	broad.mit.edu	37	11	36597979	36597979	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI14	26064	broad.mit.edu	37	5	34795968	34795968	+	Intron	SNP	C	G	G	rs12521356		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI14	26064	broad.mit.edu	37	5	34796101	34796102	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36169457	36169457	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37137925	37137925	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85097200	85097200	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85208153	85208153	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85441629	85441629	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85508575	85508575	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85591932	85591932	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85799977	85799977	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP17	64901	broad.mit.edu	37	5	170668068	170668068	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP	5909	broad.mit.edu	37	1	21925942	21925942	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF2	9693	broad.mit.edu	37	4	160274897	160274897	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173729103	173729103	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173898594	173898594	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARB	5915	broad.mit.edu	37	3	25216070	25216070	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA2	5922	broad.mit.edu	37	3	141305620	141305620	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114786936	114786936	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114839306	114839306	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178412287	178412287	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80338837	80338837	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80369088	80369088	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80409194	80409194	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF2	9770	broad.mit.edu	37	20	4768388	4768388	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAVER2	55225	broad.mit.edu	37	1	65278516	65278516	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1CC1	9821	broad.mit.edu	37	8	53573763	53573763	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48941739	48941739	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBAK	57786	broad.mit.edu	37	7	5104121	5104121	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24572855	24572855	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM15	64783	broad.mit.edu	37	1	110883840	110883840	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM15	64783	broad.mit.edu	37	1	110884807	110884807	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM16	22828	broad.mit.edu	37	6	155153580	155153580	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM26	64062	broad.mit.edu	37	13	79896441	79896441	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM28	55131	broad.mit.edu	37	7	127953116	127953116	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM42	79171	broad.mit.edu	37	19	36120381	36120381	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM47	54502	broad.mit.edu	37	4	40438622	40438622	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM4	5936	broad.mit.edu	37	11	66407690	66407690	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM6	10180	broad.mit.edu	37	3	50085713	50085713	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM6	10180	broad.mit.edu	37	3	50098480	50098480	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMS1	5937	broad.mit.edu	37	2	161141660	161141660	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMS3	27303	broad.mit.edu	37	3	29343590	29343590	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBPMS2	348093	broad.mit.edu	37	15	65042643	65042643	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H2	54542	broad.mit.edu	37	9	125659558	125659558	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCL1	10171	broad.mit.edu	37	9	4826753	4826753	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCN1	5954	broad.mit.edu	37	11	31976669	31976669	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCSD1	92241	broad.mit.edu	37	1	167627736	167627736	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCVRN	5957	broad.mit.edu	37	17	9808315	9808315	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDX	5962	broad.mit.edu	37	11	110108528	110108528	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECK	8434	broad.mit.edu	37	9	36120753	36120753	+	Intron	SNP	G	T	T	rs61695203		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REEP5	7905	broad.mit.edu	37	5	112228886	112228886	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79348450	79348450	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79348632	79348632	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79348699	79348699	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79349394	79349394	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79349996	79349996	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79350316	79350316	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79314643	79314643	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79254878	79254878	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG4	83998	broad.mit.edu	37	1	120345520	120345520	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELA	5970	broad.mit.edu	37	11	65426170	65426170	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103113385	103113385	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103130997	103130997	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103141204	103141204	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103197708	103197708	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103206998	103206998	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103234239	103234239	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103322550	103322550	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103338364	103338364	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103529819	103529819	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REL	5966	broad.mit.edu	37	2	61149451	61149451	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REM1	28954	broad.mit.edu	37	20	30070222	30070222	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REN	5972	broad.mit.edu	37	1	204130499	204130499	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8425950	8425950	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8569474	8569497	+	Intron	DEL	TCCATCCATCCATCCATCCATCCG	-	-	rs140535131		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETNLB	84666	broad.mit.edu	37	3	108475360	108475360	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC1	5981	broad.mit.edu	37	4	39310098	39310098	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC3	5983	broad.mit.edu	37	13	34404010	34404010	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC4	5984	broad.mit.edu	37	3	186507930	186507930	+	Splice_Site	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFT1	91869	broad.mit.edu	37	3	53126615	53126615	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFTN1	23180	broad.mit.edu	37	3	16532965	16532965	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX2	5990	broad.mit.edu	37	19	6026250	6026250	+	Splice_Site	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107080945	107080946	+	Intron	INS	-	TC	TC	rs57545359		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107083232	107083232	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107106552	107106552	+	Intron	DEL	T	-	-	rs59951084		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107144273	107144273	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117243091	117243091	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117243247	117243247	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX7	64864	broad.mit.edu	37	15	56481093	56481093	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX8	731220	broad.mit.edu	37	2	102025566	102025566	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD3	653489	broad.mit.edu	37	2	107029477	107029477	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD3	653489	broad.mit.edu	37	2	107041678	107041678	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD3	653489	broad.mit.edu	37	2	107052728	107052728	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGR	5995	broad.mit.edu	37	10	86012781	86012781	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72510212	72510212	+	Intron	DEL	T	-	-	rs11361663		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72831466	72831466	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240969648	240969648	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241083438	241083438	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241469818	241469818	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS8	85397	broad.mit.edu	37	1	182615997	182615997	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS9	8787	broad.mit.edu	37	17	63157068	63157068	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS9	8787	broad.mit.edu	37	17	63206851	63206851	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS9	8787	broad.mit.edu	37	17	63221338	63221339	+	Nonsense_Mutation	DNP	CA	AC	AC			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49580094	49580094	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDF2	79651	broad.mit.edu	37	17	74475137	74475137	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDL3	162494	broad.mit.edu	37	17	30643396	30643396	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOJ	57381	broad.mit.edu	37	14	63671892	63671892	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOT1	55288	broad.mit.edu	37	17	30527940	30527940	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHPN2	85415	broad.mit.edu	37	19	33493842	33493842	+	Missense_Mutation	SNP	C	T	T	rs137892450		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152319744	152319744	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130934721	130934721	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130935730	130935730	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130941022	130941022	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72806711	72806711	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72806843	72806843	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72809704	72809704	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72961112	72961112	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104671575	104671575	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104672498	104672498	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104898178	104898178	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS3	9783	broad.mit.edu	37	1	41094586	41094586	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIN2	54453	broad.mit.edu	37	20	19955660	19955660	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIN3	79890	broad.mit.edu	37	14	93106664	93106664	+	Intron	SNP	T	C	C	rs113820452		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK2	55781	broad.mit.edu	37	5	96503604	96503604	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK2	55781	broad.mit.edu	37	5	96513554	96513554	+	Splice_Site	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40495290	40495290	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40554063	40554063	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40570052	40570052	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40573451	40573451	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40693740	40693740	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLF	6018	broad.mit.edu	37	1	40697321	40697321	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87049589	87049589	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87446938	87446938	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87580982	87580982	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87866142	87866142	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE10	338879	broad.mit.edu	37	14	20978700	20978700	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE9	390443	broad.mit.edu	37	14	21025342	21025342	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF123	63891	broad.mit.edu	37	3	49735811	49735811	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF128	79589	broad.mit.edu	37	X	105937175	105937175	+	5'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF14	9604	broad.mit.edu	37	5	141354434	141354434	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF150	57484	broad.mit.edu	37	4	141870377	141870377	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF150	57484	broad.mit.edu	37	4	141879391	141879391	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF152	220441	broad.mit.edu	37	18	59496932	59496932	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74152229	74152229	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74155306	74155306	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF175	285533	broad.mit.edu	37	4	154669893	154669893	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25376760	25376760	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF182	221687	broad.mit.edu	37	6	13949788	13949788	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF182	221687	broad.mit.edu	37	6	13977560	13977560	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78317028	78317028	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78350800	78350800	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78359421	78359421	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF220	55182	broad.mit.edu	37	1	44990079	44990079	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF40	9810	broad.mit.edu	37	16	30777684	30777684	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF8	9025	broad.mit.edu	37	6	37336267	37336267	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNFT2	84900	broad.mit.edu	37	12	117290545	117290545	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNPEPL1	57140	broad.mit.edu	37	2	241514578	241514578	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78680311	78680311	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79043495	79043495	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79174657	79174657	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79652490	79652491	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77366426	77366426	+	Intron	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77526491	77526491	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77599951	77599951	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77651625	77651625	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO3	64221	broad.mit.edu	37	11	124740532	124740532	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO3	64221	broad.mit.edu	37	11	124744193	124744193	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124767670	124767670	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROPN1	54763	broad.mit.edu	37	3	123688964	123688964	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR1	4919	broad.mit.edu	37	1	64624702	64624702	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77300627	77300627	+	3'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117609876	117609876	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10479344	10479344	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP3	79657	broad.mit.edu	37	12	48057387	48057387	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68900727	68900727	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPF1	80135	broad.mit.edu	37	1	84955400	84955400	+	Silent	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1L	23322	broad.mit.edu	37	16	53670419	53670419	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPIA	22934	broad.mit.edu	37	2	89049591	89049591	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10L	140801	broad.mit.edu	37	14	47120603	47120603	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL11	6135	broad.mit.edu	37	1	24021209	24021209	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL18A	6142	broad.mit.edu	37	19	17972898	17972898	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL23P8	222901	broad.mit.edu	37	7	20867176	20867176	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL4	6124	broad.mit.edu	37	15	66794968	66794968	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL8	6132	broad.mit.edu	37	8	146017270	146017270	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35867230	35867230	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA1	6195	broad.mit.edu	37	1	26881283	26881283	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA1	6195	broad.mit.edu	37	1	26900543	26900543	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	166923932	166923932	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KB2	6199	broad.mit.edu	37	11	67200238	67200239	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS7	6201	broad.mit.edu	37	2	3623151	3623151	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPUSD3	285367	broad.mit.edu	37	3	9880781	9880781	+	Missense_Mutation	SNP	G	A	A	rs146799821	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGC	64121	broad.mit.edu	37	1	39322845	39322845	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGC	64121	broad.mit.edu	37	1	39330332	39330332	+	5'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7231129	7231129	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRM1	6240	broad.mit.edu	37	11	4189401	4189401	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSAD1	55316	broad.mit.edu	37	17	48559270	48559270	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSF1	51773	broad.mit.edu	37	11	77402204	77402204	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH3	83861	broad.mit.edu	37	6	159403567	159403567	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO1	284654	broad.mit.edu	37	1	38078422	38078422	+	3'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	122992897	122992897	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTKN2	219790	broad.mit.edu	37	10	64005899	64005899	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60072317	60072317	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4RL1	146760	broad.mit.edu	37	17	1840809	1840809	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4RL2	349667	broad.mit.edu	37	11	57231092	57231092	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67697404	67697404	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY4	285180	broad.mit.edu	37	2	218926021	218926021	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93017655	93017655	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93097004	93097004	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1	861	broad.mit.edu	37	21	36231898	36231898	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1	861	broad.mit.edu	37	21	36623902	36623902	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1	861	broad.mit.edu	37	21	36936757	36936757	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX2	860	broad.mit.edu	37	6	45464774	45464774	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RWDD1	51389	broad.mit.edu	37	6	116892648	116892648	+	5'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159546225	159546226	+	Intron	DEL	TT	-	-	rs61614764		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYBP	23429	broad.mit.edu	37	3	72427727	72427727	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38960104	38960104	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38980058	38980058	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39018332	39018332	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39019542	39019542	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39034164	39034164	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237261754	237261754	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237265479	237265479	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237494024	237494024	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237666808	237666808	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237666913	237666913	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237755023	237755023	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237756932	237756932	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237765499	237765499	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237768605	237768605	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237774372	237774373	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237777632	237777632	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237788801	237788801	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237791135	237791135	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237813402	237813402	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237817540	237817540	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237817804	237817804	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237831190	237831190	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237843946	237843946	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237855570	237855570	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237870112	237870113	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237893643	237893643	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237923276	237923276	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947538	237947538	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237993907	237993907	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33785351	33785351	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33814038	33814038	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33814586	33814586	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33895184	33895184	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33954739	33954739	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34115369	34115369	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34123242	34123242	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A8	6279	broad.mit.edu	37	1	153362656	153362656	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A8	6279	broad.mit.edu	37	1	153362849	153362849	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR1	1901	broad.mit.edu	37	1	101705739	101705739	+	3'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23907231	23907231	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23908500	23908500	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134994548	134994548	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134994598	134994598	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAG	6295	broad.mit.edu	37	2	234247495	234247495	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50400982	50400983	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50406738	50406738	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD3	154075	broad.mit.edu	37	6	130467437	130467437	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD3	154075	broad.mit.edu	37	6	130505333	130505333	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD3	154075	broad.mit.edu	37	6	130535713	130535713	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169646434	169646434	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92765029	92765029	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92767318	92767318	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMSN1	64092	broad.mit.edu	37	21	15918462	15918462	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP30BP	29115	broad.mit.edu	37	17	73699460	73699460	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS2	9701	broad.mit.edu	37	22	50876562	50876562	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARDH	1757	broad.mit.edu	37	9	136573493	136573493	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH1	23328	broad.mit.edu	37	6	148795358	148795359	+	Splice_Site	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB1	6304	broad.mit.edu	37	3	18436474	18436474	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200137063	200137063	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200188558	200188559	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBDSP1	155370	broad.mit.edu	37	7	72300498	72300498	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50906182	50906182	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBK1	388228	broad.mit.edu	37	16	28314417	28314417	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBNO1	55206	broad.mit.edu	37	12	123782558	123782558	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBSN	374897	broad.mit.edu	37	19	36018907	36018907	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SC65	10609	broad.mit.edu	37	17	39965809	39965809	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAI	286205	broad.mit.edu	37	9	127781279	127781279	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP4	113178	broad.mit.edu	37	19	1917810	1917810	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCD5	79966	broad.mit.edu	37	4	83552387	83552387	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCD	6319	broad.mit.edu	37	10	102114138	102114138	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD2	152579	broad.mit.edu	37	4	53972264	53972264	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB1D2	10647	broad.mit.edu	37	11	62009929	62009929	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGN	10590	broad.mit.edu	37	6	25689550	25689550	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	158867775	158867775	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	158921692	158921692	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML4	256380	broad.mit.edu	37	6	108066084	108066084	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38739454	38739454	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38797614	38797614	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38833315	38833315	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38889099	38889099	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38941498	38941498	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166901479	166901479	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166904360	166904360	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166102052	166102052	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166164220	166164220	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166183297	166183297	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2B	6327	broad.mit.edu	37	11	118042474	118042474	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165948901	165948901	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165969305	165969305	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165986775	165986775	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165994467	165994467	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62020584	62020584	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62026918	62026918	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62034576	62034576	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62036874	62036874	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38594239	38594239	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38640459	38640459	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167297982	167297982	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167327161	167327161	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167330414	167330414	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167136847	167136847	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1G	6340	broad.mit.edu	37	16	23226313	23226313	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN1	9805	broad.mit.edu	37	7	29983488	29983488	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE1	80274	broad.mit.edu	37	22	43614196	43614196	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE3	222663	broad.mit.edu	37	6	35200627	35200627	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE3	222663	broad.mit.edu	37	6	35201813	35201813	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCBP2	27111	broad.mit.edu	37	20	1301287	1301287	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50319395	50319395	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG8	10806	broad.mit.edu	37	1	243477949	243477949	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG8	10806	broad.mit.edu	37	1	243507425	243507425	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHAP1	255812	broad.mit.edu	37	3	195702825	195702825	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHC	6391	broad.mit.edu	37	1	161326393	161326393	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4198048	4198048	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71410867	71410867	+	Silent	SNP	C	T	T	rs139471859		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71443715	71443715	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71591372	71591372	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDSL	113675	broad.mit.edu	37	12	113873131	113873131	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L4	284904	broad.mit.edu	37	22	30899719	30899719	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16B	89866	broad.mit.edu	37	1	177902560	177902560	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC22B	9554	broad.mit.edu	37	1	145116811	145116811	+	3'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23A	10484	broad.mit.edu	37	14	39514286	39514286	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23IP	11196	broad.mit.edu	37	10	121657782	121657782	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2L	9728	broad.mit.edu	37	15	49320347	49320347	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13858203	13858203	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L3	23231	broad.mit.edu	37	4	25827592	25827592	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L3	23231	broad.mit.edu	37	4	25849101	25849101	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELE	6401	broad.mit.edu	37	1	169694835	169694835	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169559394	169559394	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169572650	169572650	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3C	10512	broad.mit.edu	37	7	80456808	80456808	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84628729	84628729	+	3'UTR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84636208	84636208	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84642094	84642094	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84666379	84666379	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3E	9723	broad.mit.edu	37	7	83035185	83035185	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3E	9723	broad.mit.edu	37	7	83277771	83277771	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3F	6405	broad.mit.edu	37	3	50223738	50223738	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3G	56920	broad.mit.edu	37	3	52475604	52475604	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4A	64218	broad.mit.edu	37	1	156127927	156127927	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9042873	9042873	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9050639	9050639	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9052122	9052122	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9108455	9108455	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9154866	9154866	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9319564	9319564	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9342367	9342368	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9379919	9379919	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9442458	9442458	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9508768	9508768	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122632803	122632803	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122645495	122645495	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115814542	115814542	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6C	10500	broad.mit.edu	37	1	151110451	151110451	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6C	10500	broad.mit.edu	37	1	151110648	151110648	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48056736	48056736	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48058162	48058162	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA7A	8482	broad.mit.edu	37	15	74704250	74704250	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEP15	9403	broad.mit.edu	37	1	87369133	87369133	+	Splice_Site	SNP	T	A	A	rs111719584		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPSECS	51091	broad.mit.edu	37	4	25160709	25160709	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT11	55752	broad.mit.edu	37	4	77952117	77952117	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55878806	55878806	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT9	10801	broad.mit.edu	37	17	75398825	75398825	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERGEF	26297	broad.mit.edu	37	11	17918689	17918689	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERINC1	57515	broad.mit.edu	37	6	122776544	122776544	+	Intron	DEL	A	-	-	rs147850835		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA11	256394	broad.mit.edu	37	14	94913161	94913161	+	Intron	SNP	A	T	T	rs116169304	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA12	145264	broad.mit.edu	37	14	94956299	94956299	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95089889	95089889	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA9	327657	broad.mit.edu	37	14	94938246	94938246	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA9	327657	broad.mit.edu	37	14	94940039	94940039	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB10	5273	broad.mit.edu	37	18	61600227	61600227	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB11	89778	broad.mit.edu	37	18	61379924	61379924	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB11	89778	broad.mit.edu	37	18	61380053	61380053	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB12	89777	broad.mit.edu	37	18	61231353	61231353	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61260372	61260372	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61264337	61264337	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61306602	61306602	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61308221	61308221	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61310995	61310995	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPIND1	3053	broad.mit.edu	37	22	21134267	21134267	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE2	5270	broad.mit.edu	37	2	224856722	224856722	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE2	5270	broad.mit.edu	37	2	224865927	224865927	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINH1	871	broad.mit.edu	37	11	75277761	75277762	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESN1	27244	broad.mit.edu	37	6	109319696	109319696	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESTD1	91404	broad.mit.edu	37	2	180036820	180036820	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESTD1	91404	broad.mit.edu	37	2	180047903	180047903	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42284729	42284729	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42331108	42331108	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42539702	42539702	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD3	84193	broad.mit.edu	37	14	99870535	99870535	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135206758	135206758	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B2	10992	broad.mit.edu	37	11	65819874	65819874	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B2	10992	broad.mit.edu	37	11	65828208	65828208	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT1	51460	broad.mit.edu	37	3	52947435	52947435	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRP1	6422	broad.mit.edu	37	8	41164414	41164414	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRP2	6423	broad.mit.edu	37	4	154709985	154709985	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS17A	8227	broad.mit.edu	37	X	1720179	1720179	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS5	6430	broad.mit.edu	37	14	70198852	70198852	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN1	94081	broad.mit.edu	37	5	174943588	174943588	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155978094	155978094	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	156186448	156186448	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCG	6445	broad.mit.edu	37	13	23808855	23808855	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14721324	14721324	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGEF	26084	broad.mit.edu	37	3	153847407	153847407	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67133325	67133325	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67142774	67142774	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK1	6446	broad.mit.edu	37	6	134494448	134494448	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK1	6446	broad.mit.edu	37	6	134495124	134495124	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGMS2	166929	broad.mit.edu	37	4	108829993	108829993	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGSM1	129049	broad.mit.edu	37	22	25227206	25227206	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D2A	9047	broad.mit.edu	37	1	156776960	156776960	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D3C	10044	broad.mit.edu	37	9	130509559	130509559	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D4B	387694	broad.mit.edu	37	10	82331116	82331116	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D4B	387694	broad.mit.edu	37	10	82363319	82363319	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP2	6452	broad.mit.edu	37	4	2822418	2822418	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP4	23677	broad.mit.edu	37	2	235951538	235951538	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP4	23677	broad.mit.edu	37	2	235951704	235951704	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL2	6456	broad.mit.edu	37	9	17791292	17791292	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL3	6457	broad.mit.edu	37	15	84257444	84257444	+	Silent	SNP	A	T	T	rs140124071		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GLB1	51100	broad.mit.edu	37	1	87181526	87181526	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3KBP1	30011	broad.mit.edu	37	X	19817533	19817533	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2A	9644	broad.mit.edu	37	10	105372657	105372657	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2B	285590	broad.mit.edu	37	5	171766420	171766420	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3RF2	153769	broad.mit.edu	37	5	145433857	145433857	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3RF2	153769	broad.mit.edu	37	5	145446321	145446321	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148168655	148168655	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148406949	148406949	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148407710	148407710	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51200303	51200303	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51219698	51219698	+	Missense_Mutation	SNP	G	T	T	rs143340442		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70332419	70332419	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHBG	6462	broad.mit.edu	37	17	7536237	7536237	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHB	6461	broad.mit.edu	37	9	37974622	37974623	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC3	53358	broad.mit.edu	37	9	91721513	91721513	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHD	56961	broad.mit.edu	37	19	4283231	4283231	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA6	388336	broad.mit.edu	37	17	11460492	11460492	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13240072	13240072	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13328991	13328992	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHKBP1	92799	broad.mit.edu	37	19	41089452	41089452	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPK	23729	broad.mit.edu	37	17	3526621	3526621	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM3	57619	broad.mit.edu	37	4	77660382	77660382	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52002708	52002708	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC15	284266	broad.mit.edu	37	18	43405708	43405708	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC16	400709	broad.mit.edu	37	19	50475128	50475128	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC7	27036	broad.mit.edu	37	19	51647734	51647734	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC8	27181	broad.mit.edu	37	19	51961552	51961552	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIL1	64374	broad.mit.edu	37	5	138282915	138282915	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIN3A	25942	broad.mit.edu	37	15	75684893	75684893	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIN3B	23309	broad.mit.edu	37	19	16980267	16980267	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIP1	8487	broad.mit.edu	37	14	39583497	39583497	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72165840	72165840	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72171842	72171842	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72201797	72201797	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38621028	38621028	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPA	140885	broad.mit.edu	37	20	1902267	1902267	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPA	140885	broad.mit.edu	37	20	1915565	1915565	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRT1	23411	broad.mit.edu	37	10	69666588	69666588	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRT4	23409	broad.mit.edu	37	12	120741790	120741790	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164714304	164714304	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164739220	164739220	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164741603	164741603	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164758937	164758937	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164760931	164760931	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164777671	164777671	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKP2	6502	broad.mit.edu	37	5	36153042	36153042	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160582354	160582354	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160585493	160585493	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF6	114836	broad.mit.edu	37	1	160465812	160465812	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF6	114836	broad.mit.edu	37	1	160472993	160472993	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103710780	103710780	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC11A2	4891	broad.mit.edu	37	12	51384438	51384438	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC11A2	4891	broad.mit.edu	37	12	51393097	51393097	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48544096	48544096	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A2	6558	broad.mit.edu	37	5	127466944	127466944	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44665475	44665475	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A6	9990	broad.mit.edu	37	15	34542575	34542575	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122757708	122757708	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122765856	122765856	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A4	26266	broad.mit.edu	37	7	135369118	135369118	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A4	26266	broad.mit.edu	37	7	135380325	135380325	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A4	26266	broad.mit.edu	37	7	135387756	135387756	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	42789022	42789022	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	42939374	42939374	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43174253	43174253	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43203080	43203080	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43247082	43247082	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A2	6565	broad.mit.edu	37	3	121643447	121643448	+	Intron	INS	-	T	T	rs145210388	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A10	117247	broad.mit.edu	37	6	111458827	111458827	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A10	117247	broad.mit.edu	37	6	111543326	111543326	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A1	6566	broad.mit.edu	37	1	113466733	113466733	+	Intron	SNP	G	A	A	rs144957900	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A1	6568	broad.mit.edu	37	6	25830723	25830723	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25917152	25917152	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25918611	25918611	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A4	10050	broad.mit.edu	37	6	25778297	25778297	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22398157	22398157	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100796091	100796091	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100811813	100811813	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A1	6570	broad.mit.edu	37	8	20028889	20028889	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A3	6572	broad.mit.edu	37	10	50819662	50819662	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC19A3	80704	broad.mit.edu	37	2	228552050	228552050	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC19A3	80704	broad.mit.edu	37	2	228564016	228564016	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A2	6506	broad.mit.edu	37	11	35298615	35298615	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A2	6506	broad.mit.edu	37	11	35323249	35323249	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15073180	15073180	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A7	6512	broad.mit.edu	37	1	53580607	53580607	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A7	6512	broad.mit.edu	37	1	53597765	53597765	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A7	6512	broad.mit.edu	37	1	53600159	53600159	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63057575	63057575	+	5'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A14	9389	broad.mit.edu	37	3	38350360	38350360	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A18	5002	broad.mit.edu	37	11	2940624	2940624	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A1	6580	broad.mit.edu	37	6	160557545	160557545	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A25	387601	broad.mit.edu	37	11	62931929	62931929	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A2	6582	broad.mit.edu	37	6	160645597	160645597	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A2	6582	broad.mit.edu	37	6	160662577	160662577	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A2	6582	broad.mit.edu	37	6	160663500	160663500	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A6	9356	broad.mit.edu	37	11	62747341	62747341	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A7	10864	broad.mit.edu	37	6	43267865	43267865	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A9	114571	broad.mit.edu	37	11	63138746	63138746	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A1	9963	broad.mit.edu	37	5	138718386	138718386	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19612139	19612139	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19665312	19665312	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19705702	19705702	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92905839	92905839	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92915394	92915394	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A12	8604	broad.mit.edu	37	2	172749818	172749818	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A21	89874	broad.mit.edu	37	14	37473668	37473668	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A21	89874	broad.mit.edu	37	14	37641526	37641526	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A28	81894	broad.mit.edu	37	10	101373554	101373554	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A30	253512	broad.mit.edu	37	13	45973025	45973025	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A39	51629	broad.mit.edu	37	17	42398532	42398533	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A39	51629	broad.mit.edu	37	17	42398992	42398992	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A10	65012	broad.mit.edu	37	12	58018523	58018523	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A10	65012	broad.mit.edu	37	12	58018915	58018915	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A3	1811	broad.mit.edu	37	7	107415236	107415236	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A3	1811	broad.mit.edu	37	7	107416863	107416863	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107315473	107315473	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103033314	103033314	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92352615	92352615	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92355744	92355744	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A3	11000	broad.mit.edu	37	1	153748852	153748852	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A4	10999	broad.mit.edu	37	9	131105559	131105559	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128320926	128320926	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128351927	128351927	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85456037	85456037	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85461989	85461989	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85484003	85484003	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A2	9153	broad.mit.edu	37	15	45545372	45545372	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A2	9153	broad.mit.edu	37	15	45557693	45557693	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC29A3	55315	broad.mit.edu	37	10	73121684	73121684	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A2	6514	broad.mit.edu	37	3	170722942	170722942	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A2	6514	broad.mit.edu	37	3	170723710	170723710	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A2	6514	broad.mit.edu	37	3	170736366	170736366	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A3	6515	broad.mit.edu	37	12	8073983	8073983	+	3'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A5	6518	broad.mit.edu	37	1	9097801	9097801	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A5	6518	broad.mit.edu	37	1	9117522	9117522	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A7	155184	broad.mit.edu	37	1	9085118	9085118	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A7	155184	broad.mit.edu	37	1	9085120	9085120	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A3	7781	broad.mit.edu	37	2	27480055	27480055	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A3	7781	broad.mit.edu	37	2	27488685	27488685	+	5'Flank	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32426971	32426971	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A8	169026	broad.mit.edu	37	8	118126099	118126099	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B3	51000	broad.mit.edu	37	6	8435681	8435681	+	Translation_Start_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B4	84912	broad.mit.edu	37	7	133989530	133989530	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35C2	51006	broad.mit.edu	37	20	44983661	44983661	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35D2	11046	broad.mit.edu	37	9	99083720	99083720	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118292375	118292375	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118320325	118320325	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118326696	118326696	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118421863	118421863	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118453548	118453548	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118462773	118462773	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F3	148641	broad.mit.edu	37	1	234075479	234075479	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A1	206358	broad.mit.edu	37	5	150847148	150847148	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC37A3	84255	broad.mit.edu	37	7	140051857	140051857	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A11	151258	broad.mit.edu	37	2	165802212	165802212	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A1	81539	broad.mit.edu	37	12	46622958	46622958	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A3	10991	broad.mit.edu	37	3	50254782	50254782	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A6	145389	broad.mit.edu	37	14	61512086	61512086	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A6	145389	broad.mit.edu	37	14	61518588	61518588	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A7	55238	broad.mit.edu	37	16	58710084	58710084	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A9	153129	broad.mit.edu	37	5	54965466	54965466	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A11	201266	broad.mit.edu	37	17	70824409	70824409	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A11	201266	broad.mit.edu	37	17	70913587	70913587	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18242350	18242350	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18331665	18331665	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A13	91252	broad.mit.edu	37	11	47381384	47381384	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A2	29986	broad.mit.edu	37	14	21467673	21467673	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC3A2	6520	broad.mit.edu	37	11	62656036	62656036	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC40A1	30061	broad.mit.edu	37	2	190439990	190439990	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC43A3	29015	broad.mit.edu	37	11	57175483	57175483	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC43A3	29015	broad.mit.edu	37	11	57193471	57193471	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A1	23446	broad.mit.edu	37	9	108089985	108089985	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A1	23446	broad.mit.edu	37	9	108145658	108145658	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A2	57153	broad.mit.edu	37	19	10753919	10753919	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75684994	75684994	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75880918	75880918	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	76107308	76107308	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A4	57210	broad.mit.edu	37	8	142221580	142221580	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162735742	162735742	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1AP	22950	broad.mit.edu	37	2	27889956	27889956	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220494260	220494260	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220504500	220504500	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220505152	220505152	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A4	8671	broad.mit.edu	37	4	72263426	72263426	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74534960	74534960	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51851020	51851020	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24918337	24918337	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24919528	24919528	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24922713	24922713	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A12	159963	broad.mit.edu	37	11	26700107	26700107	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A12	159963	broad.mit.edu	37	11	26730735	26730735	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A12	159963	broad.mit.edu	37	11	26747702	26747709	+	5'Flank	DEL	TTCTTCCT	-	-	rs4259786		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A3	6526	broad.mit.edu	37	21	35467934	35467934	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A5	6528	broad.mit.edu	37	19	17988772	17988772	+	Splice_Site	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A6	8884	broad.mit.edu	37	2	27429627	27429627	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A7	60482	broad.mit.edu	37	2	108618233	108618233	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A9	200010	broad.mit.edu	37	1	48697132	48697132	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32890962	32890962	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A11	6538	broad.mit.edu	37	3	10971058	10971058	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A12	6539	broad.mit.edu	37	12	304297	304297	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A13	6540	broad.mit.edu	37	12	333264	333264	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85266819	85266819	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110727868	110727868	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A18	348932	broad.mit.edu	37	5	1239458	1239458	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1219796	1219796	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55725950	55725950	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55732624	55732624	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A4	6532	broad.mit.edu	37	17	28544986	28544986	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A4	6532	broad.mit.edu	37	17	28548791	28548791	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A6	6533	broad.mit.edu	37	3	14526392	14526392	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A9	6536	broad.mit.edu	37	1	44476399	44476399	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A5P2	387254	broad.mit.edu	37	16	21531551	21531551	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A9	11136	broad.mit.edu	37	19	33324293	33324293	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40657293	40657293	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70515901	70515901	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70532530	70532530	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70542194	70542194	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A3	6550	broad.mit.edu	37	5	479863	479863	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103095315	103095315	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143066413	143066413	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143160671	143160672	+	Intron	INS	-	TCAT	TCAT	rs144760598	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143371170	143371170	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21468332	21468332	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21472160	21472160	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20876217	20876217	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20890330	20890330	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20903534	20903534	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2A1	6578	broad.mit.edu	37	3	133698552	133698553	+	Intron	DEL	CT	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74842445	74842445	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO3A1	28232	broad.mit.edu	37	15	92583285	92583285	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO4C1	353189	broad.mit.edu	37	5	101606329	101606329	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO4C1	353189	broad.mit.edu	37	5	101606574	101606574	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70650550	70650550	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101724433	101724433	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101794272	101794272	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN12L	342615	broad.mit.edu	37	17	33849224	33849224	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20255564	20255564	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20469422	20469422	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20525544	20525544	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20543082	20543082	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20611664	20611664	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20611666	20611666	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20611668	20611668	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20611815	20611815	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168112530	168112530	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84455387	84455387	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84455389	84455389	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144905636	144905636	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144905726	144905726	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK4	139065	broad.mit.edu	37	X	142717182	142717183	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88329046	88329046	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLK	9748	broad.mit.edu	37	10	105777729	105777730	+	Intron	INS	-	T	T	rs145780598	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD7	4092	broad.mit.edu	37	18	46453681	46453682	+	Intron	INS	-	T	T	rs142024392		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD9	4093	broad.mit.edu	37	13	37439960	37439960	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2086930	2086930	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2115747	2115747	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA5	8467	broad.mit.edu	37	4	144449968	144449968	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC2	10592	broad.mit.edu	37	9	106889393	106889393	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC3	9126	broad.mit.edu	37	10	112350109	112350109	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC5	23137	broad.mit.edu	37	9	72879434	72879434	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2688415	2688415	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMEK1	55671	broad.mit.edu	37	14	91948454	91948454	+	Silent	SNP	C	A	A	rs61757451	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18897085	18897085	+	Intron	SNP	A	G	G	rs150351611	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOX	54498	broad.mit.edu	37	20	4162573	4162573	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD1	6609	broad.mit.edu	37	11	6412057	6412057	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD4	55627	broad.mit.edu	37	2	130911119	130911119	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPX	23676	broad.mit.edu	37	X	21772556	21772556	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMR3B	10879	broad.mit.edu	37	4	71255442	71255442	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMUG1	23583	broad.mit.edu	37	12	54575278	54575278	+	3'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88396283	88396283	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88411652	88411652	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246244804	246244804	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246641978	246641978	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD5	10322	broad.mit.edu	37	2	73447718	73447718	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84417451	84417451	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84417717	84417717	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAPC1	6617	broad.mit.edu	37	14	62229216	62229216	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAR-B2	100170217	broad.mit.edu	37	19	50638847	50638847	+	5'Flank	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNF8	11267	broad.mit.edu	37	17	47014474	47014474	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-5	767581	broad.mit.edu	37	14	101420708	101420708	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25299294	25299295	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25310333	25310333	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25346733	25346733	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNPH	9751	broad.mit.edu	37	20	1256035	1256035	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP48	154007	broad.mit.edu	37	6	7601747	7601747	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25154871	25154871	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25223785	25223785	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121650187	121650187	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121748452	121748452	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121774697	121774697	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51415438	51415438	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51571295	51571295	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1021417	1021417	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1263281	1263281	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX13	23161	broad.mit.edu	37	7	17890414	17890414	+	Intron	DEL	A	-	-	rs3839705		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX14	57231	broad.mit.edu	37	6	86223583	86223583	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX14	57231	broad.mit.edu	37	6	86223586	86223586	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX17	9784	broad.mit.edu	37	2	27595405	27595405	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX18	112574	broad.mit.edu	37	5	53834270	53834270	+	Intron	DEL	A	-	-	rs66803109		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX19	399979	broad.mit.edu	37	11	130750307	130750307	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX19	399979	broad.mit.edu	37	11	130773244	130773244	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12497316	12497316	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12648243	12648244	+	Intron	INS	-	T	T	rs72530767	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX31	169166	broad.mit.edu	37	8	101601191	101601191	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX8	29886	broad.mit.edu	37	7	2303908	2303908	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOBP	55084	broad.mit.edu	37	6	107955743	107955743	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS3	10174	broad.mit.edu	37	8	22429847	22429847	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108357047	108357047	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108371772	108371772	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS2	57537	broad.mit.edu	37	4	7524328	7524328	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106565247	106565247	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106602702	106602702	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106602756	106602756	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106630483	106630483	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106675748	106675748	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106778189	106778189	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106822576	106822576	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106833540	106833540	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106849559	106849559	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	107022242	107022242	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	107022998	107022998	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121341048	121341048	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121348762	121348762	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121351887	121351888	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121427961	121427961	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121459798	121459798	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121460164	121460164	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121491932	121491932	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX14	8403	broad.mit.edu	37	3	137483920	137483920	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX30	11063	broad.mit.edu	37	5	157073743	157073743	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX30	11063	broad.mit.edu	37	5	157077943	157077943	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	24049026	24049026	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	24365348	24365348	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	24590909	24590909	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16010602	16010602	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16371721	16371721	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231051843	231051844	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231103043	231103043	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231113823	231113823	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231120199	231120199	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231134613	231134613	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231177452	231177452	+	3'UTR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP1	6667	broad.mit.edu	37	12	53800476	53800476	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP4	6671	broad.mit.edu	37	7	21469849	21469849	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP7	121340	broad.mit.edu	37	12	53722395	53722395	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPACA1	81833	broad.mit.edu	37	6	88775996	88775997	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPACA3	124912	broad.mit.edu	37	17	31318187	31318187	+	5'Flank	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214878957	214878957	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	215068447	215068447	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	215126038	215126038	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	215145632	215145632	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118506361	118506361	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118727878	118727879	+	5'Flank	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22653940	22653940	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22676834	22676834	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22690312	22690312	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG9	9043	broad.mit.edu	37	17	49133866	49133866	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142803690	142803690	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARCL1	8404	broad.mit.edu	37	4	88415261	88415261	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARC	6678	broad.mit.edu	37	5	151046005	151046005	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARC	6678	broad.mit.edu	37	5	151049241	151049241	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA17	128153	broad.mit.edu	37	1	217915222	217915222	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA17	128153	broad.mit.edu	37	1	218036261	218036262	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52943349	52943349	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52960588	52960588	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52961149	52961149	+	3'UTR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA22	84690	broad.mit.edu	37	17	3343456	3343456	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123946105	123946105	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA7	55812	broad.mit.edu	37	14	88883135	88883135	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATS1	221409	broad.mit.edu	37	6	44336083	44336083	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPC25	57405	broad.mit.edu	37	2	169732593	169732593	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYC	387778	broad.mit.edu	37	11	64938909	64938909	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE5	442590	broad.mit.edu	37	7	75125945	75125945	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE7P	441251	broad.mit.edu	37	7	72339687	72339687	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35763829	35763829	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35793528	35793528	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220304580	220304580	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220309869	220309869	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220326769	220326769	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220348024	220348024	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHK1	8877	broad.mit.edu	37	17	74383160	74383160	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228855715	228855716	+	Splice_Site	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228860428	228860428	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228881944	228881944	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228882762	228882762	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147486521	147486521	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147491469	147491469	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS1	83985	broad.mit.edu	37	16	28993708	28993708	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS2	124976	broad.mit.edu	37	17	4428322	4428323	+	Intron	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS3	201305	broad.mit.edu	37	17	4352683	4352683	+	Splice_Site	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK1	6695	broad.mit.edu	37	5	136372212	136372212	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK1	6695	broad.mit.edu	37	5	136476226	136476226	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK2	9806	broad.mit.edu	37	10	73830120	73830120	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167675843	167675843	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON2	10417	broad.mit.edu	37	4	1165197	1165197	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPP2	6694	broad.mit.edu	37	2	234965828	234965828	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPP2	6694	broad.mit.edu	37	2	234969063	234969063	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRED1	161742	broad.mit.edu	37	15	38543021	38543021	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRED3	399473	broad.mit.edu	37	19	38884946	38884946	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR3	6707	broad.mit.edu	37	1	152975854	152975854	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55657435	55657435	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158612234	158612234	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158612497	158612497	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158614264	158614264	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158632543	158632543	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158641213	158641213	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158646170	158646170	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158653253	158653253	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131361170	131361170	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54855368	54855368	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66468181	66468181	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41040047	41040047	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41071434	41071434	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN5	51332	broad.mit.edu	37	15	42155795	42155795	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTY2D1	144108	broad.mit.edu	37	11	18636397	18636397	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPZ1	84654	broad.mit.edu	37	5	79616340	79616340	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SR140	23350	broad.mit.edu	37	3	142740306	142740307	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SR140	23350	broad.mit.edu	37	3	142740431	142740431	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SR140	23350	broad.mit.edu	37	3	142745957	142745957	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCRB4D	136853	broad.mit.edu	37	7	76024714	76024714	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRC	6714	broad.mit.edu	37	20	35987996	35987996	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRC	6714	broad.mit.edu	37	20	36024453	36024453	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64378088	64378088	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64480761	64480761	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64536284	64536284	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9036364	9036364	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9101814	9101814	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9106199	9106199	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP68	6730	broad.mit.edu	37	17	74036610	74036610	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRT	51593	broad.mit.edu	37	7	100484696	100484696	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP1	6742	broad.mit.edu	37	7	141442037	141442037	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSB	6741	broad.mit.edu	37	2	170663405	170663405	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH2	85464	broad.mit.edu	37	17	27958698	27958698	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149529851	149529851	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX3	10214	broad.mit.edu	37	X	48206501	48206501	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX5	6758	broad.mit.edu	37	X	48047126	48047126	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX5	6758	broad.mit.edu	37	X	48054818	48054818	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL3	6487	broad.mit.edu	37	1	44317412	44317412	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL5	8869	broad.mit.edu	37	2	86108085	86108085	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107460148	107460148	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	76550458	76550460	+	Intron	DEL	GTT	-	-	rs143267412		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	76725231	76725231	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	77094268	77094268	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC5	81849	broad.mit.edu	37	1	77510163	77510163	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7	7982	broad.mit.edu	37	7	116830760	116830760	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA2	8128	broad.mit.edu	37	15	93011194	93011194	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17368936	17368936	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17373409	17373409	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17437860	17437861	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52558144	52558144	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104012345	104012345	+	Intron	SNP	A	T	T	rs144540181	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104142701	104142701	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC	6769	broad.mit.edu	37	3	36439935	36439935	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC	6769	broad.mit.edu	37	3	36573051	36573051	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136141757	136141757	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3L4	64940	broad.mit.edu	37	7	66785020	66785020	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBPL1	57559	broad.mit.edu	37	10	90676579	90676579	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBP	10617	broad.mit.edu	37	2	74087157	74087157	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP2	55620	broad.mit.edu	37	19	4331980	4331980	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD6	147323	broad.mit.edu	37	18	51858163	51858163	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT4	6775	broad.mit.edu	37	2	191931270	191931270	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT5B	6777	broad.mit.edu	37	17	40369475	40369475	+	Missense_Mutation	SNP	T	A	A	rs67333182		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STATH	6779	broad.mit.edu	37	4	70865520	70865520	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAU1	6780	broad.mit.edu	37	20	47751591	47751591	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STC2	8614	broad.mit.edu	37	5	172744768	172744768	+	3'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STH	246744	broad.mit.edu	37	17	44076767	44076767	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STH	246744	broad.mit.edu	37	17	44077011	44077011	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM1	6786	broad.mit.edu	37	11	4076871	4076871	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM2	57620	broad.mit.edu	37	4	27019446	27019446	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIP1	10963	broad.mit.edu	37	11	63970724	63970724	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11IP	114790	broad.mit.edu	37	2	220473360	220473360	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK17A	9263	broad.mit.edu	37	7	43647820	43647820	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK19	8859	broad.mit.edu	37	6	31948164	31948164	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK24	8428	broad.mit.edu	37	13	99164625	99164625	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23826576	23826576	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32B	55351	broad.mit.edu	37	4	5125675	5125675	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32B	55351	broad.mit.edu	37	4	5418572	5418572	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK39	27347	broad.mit.edu	37	2	168996754	168996754	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK3	6788	broad.mit.edu	37	8	99917237	99917237	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK3	6788	broad.mit.edu	37	8	99917354	99917354	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STL	7955	broad.mit.edu	37	6	125232238	125232238	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808697	48808697	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON2	85439	broad.mit.edu	37	14	81881489	81881489	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74485975	74485975	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRAP	11171	broad.mit.edu	37	12	16053067	16053067	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN3	29966	broad.mit.edu	37	14	31405897	31405897	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN	6801	broad.mit.edu	37	2	37129805	37129805	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3B	201595	broad.mit.edu	37	3	31618117	31618117	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX3	6809	broad.mit.edu	37	11	59562827	59562827	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX3	6809	broad.mit.edu	37	11	59564806	59564807	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX6	10228	broad.mit.edu	37	1	180962477	180962477	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP1	6812	broad.mit.edu	37	9	130420633	130420634	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120973802	120973802	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STYK1	55359	broad.mit.edu	37	12	10786320	10786320	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUGT1P1	441394	broad.mit.edu	37	9	33405464	33405467	+	Intron	DEL	ACAG	-	-	rs67998649		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46307626	46307626	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46359014	46359014	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1E1	6783	broad.mit.edu	37	4	70713550	70713550	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	3913308	3913308	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4024739	4024739	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4418015	4418015	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48045447	48045448	+	Intron	INS	-	C	C	rs142156983	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48065474	48065474	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31584082	31584082	+	Intron	SNP	G	A	A	rs144900840	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUOX	6821	broad.mit.edu	37	12	56398063	56398063	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT5H	6829	broad.mit.edu	37	19	39949295	39949295	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT5H	6829	broad.mit.edu	37	19	39962317	39962317	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT6H	6830	broad.mit.edu	37	17	27024728	27024728	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPV3L1	6832	broad.mit.edu	37	10	70958934	70958934	+	Missense_Mutation	SNP	A	T	T	rs148715762		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75490644	75490644	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113168921	113168921	+	Silent	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113312282	113312282	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113341784	113341784	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOPL	136306	broad.mit.edu	37	7	138287463	138287463	+	Intron	DEL	A	-	-	rs35640638		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SWAP70	23075	broad.mit.edu	37	11	9769368	9769368	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP1	6847	broad.mit.edu	37	1	115486936	115486936	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP1	6847	broad.mit.edu	37	1	115527291	115527291	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP1	6847	broad.mit.edu	37	1	115537618	115537618	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58443526	58443526	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYK	6850	broad.mit.edu	37	9	93606678	93606678	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN1	6853	broad.mit.edu	37	X	47432343	47432343	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12067513	12067513	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12208622	12208622	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN3	8224	broad.mit.edu	37	22	32999523	32999523	+	Intron	SNP	G	A	A	rs113282685		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152690363	152690363	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152706953	152706953	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152765658	152765658	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152771934	152771934	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152782765	152782765	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152784418	152784418	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64476712	64476712	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNGAP1	8831	broad.mit.edu	37	6	33407668	33407668	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNGR4	23546	broad.mit.edu	37	19	48877123	48877123	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ1	8867	broad.mit.edu	37	21	34003353	34003353	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158438832	158438832	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158497793	158497793	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPO	11346	broad.mit.edu	37	5	150028819	150028819	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPR	132204	broad.mit.edu	37	3	63466559	63466559	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNRG	11276	broad.mit.edu	37	17	35898474	35898474	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT14	255928	broad.mit.edu	37	1	210183268	210183268	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT16	83851	broad.mit.edu	37	14	62463151	62463151	+	Silent	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT3	84258	broad.mit.edu	37	19	51133443	51133443	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT7	9066	broad.mit.edu	37	11	61300423	61300423	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85406172	85406173	+	3'UTR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR8	83551	broad.mit.edu	37	6	132873854	132873854	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC1	6863	broad.mit.edu	37	7	97362112	97362112	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC1	6863	broad.mit.edu	37	7	97369110	97369110	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC1	6867	broad.mit.edu	37	8	38681544	38681544	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123954854	123954854	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR2	6865	broad.mit.edu	37	10	71164609	71164609	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1B	9014	broad.mit.edu	37	2	10008339	10008339	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32631925	32631925	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120758784	120758784	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF3	83860	broad.mit.edu	37	10	8006869	8006869	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4B	6875	broad.mit.edu	37	18	23845381	23845381	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4B	6875	broad.mit.edu	37	18	23875235	23875235	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4B	6875	broad.mit.edu	37	18	23908143	23908143	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF7L	54457	broad.mit.edu	37	X	100530248	100530248	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF7	6879	broad.mit.edu	37	5	140698996	140698996	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF7	6879	broad.mit.edu	37	5	140699320	140699320	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGAP	117289	broad.mit.edu	37	6	159457474	159457474	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGAP	117289	broad.mit.edu	37	6	159459194	159459194	+	Missense_Mutation	SNP	G	T	T	rs112913154	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAL1	6886	broad.mit.edu	37	1	47685837	47685837	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	159936828	159936829	+	Intron	DEL	AG	-	-	rs34649760		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160043538	160043538	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61497616	61497616	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS2	80222	broad.mit.edu	37	1	150461568	150461568	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS2	80222	broad.mit.edu	37	1	150469847	150469847	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS	6897	broad.mit.edu	37	5	33467558	33467558	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R2	80834	broad.mit.edu	37	1	19166621	19166621	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R2	80834	broad.mit.edu	37	1	19168216	19168216	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R16	50833	broad.mit.edu	37	7	122635622	122635622	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R60	338398	broad.mit.edu	37	7	143141421	143141421	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TASP1	55617	broad.mit.edu	37	20	13415754	13415754	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAT	6898	broad.mit.edu	37	16	71604270	71604270	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAT	6898	broad.mit.edu	37	16	71609938	71609938	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAX1BP1	8887	broad.mit.edu	37	7	27809349	27809349	+	Missense_Mutation	SNP	G	A	A	rs34347226	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D10A	83874	broad.mit.edu	37	22	30688856	30688856	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D21	161514	broad.mit.edu	37	15	74181384	74181384	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	100025400	100025400	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D29	26083	broad.mit.edu	37	17	28886893	28886893	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D2B	23102	broad.mit.edu	37	15	78316386	78316386	+	Intron	DEL	T	-	-	rs1992470	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D2	55357	broad.mit.edu	37	9	100997387	100997387	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3C	414060	broad.mit.edu	37	17	34644933	34644933	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3	729873	broad.mit.edu	37	17	36351998	36351998	+	Splice_Site	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D4	9882	broad.mit.edu	37	13	75989424	75989424	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17385803	17385803	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8B	54885	broad.mit.edu	37	X	106046140	106046140	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8	11138	broad.mit.edu	37	2	101667172	101667172	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D9B	23061	broad.mit.edu	37	5	179320615	179320615	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCB	1155	broad.mit.edu	37	19	36611741	36611741	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCCD1	55171	broad.mit.edu	37	3	186272162	186272162	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCK	93627	broad.mit.edu	37	4	107134097	107134097	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL3	10607	broad.mit.edu	37	16	2026110	2026110	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBR1	10716	broad.mit.edu	37	2	162273652	162273652	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBR1	10716	broad.mit.edu	37	2	162275306	162275306	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBRG4	9238	broad.mit.edu	37	7	45144103	45144103	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX10	347853	broad.mit.edu	37	11	67399882	67399882	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85399305	85399305	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85422391	85422391	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85466389	85466389	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85472135	85472135	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX1	6899	broad.mit.edu	37	22	19751551	19751551	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79286130	79286131	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115121006	115121006	+	5'UTR	SNP	C	A	A	rs144772866		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114793495	114793495	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114793508	114793508	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139578828	139578828	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF19	6941	broad.mit.edu	37	6	31130328	31130328	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF21	6943	broad.mit.edu	37	6	134210962	134210962	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52937331	52937331	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	53303467	53303467	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7L2	6934	broad.mit.edu	37	10	114901238	114901238	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL1A	8115	broad.mit.edu	37	14	96180146	96180146	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL1A	8115	broad.mit.edu	37	14	96180276	96180276	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCN1	6947	broad.mit.edu	37	11	59620692	59620692	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCOF1	6949	broad.mit.edu	37	5	149743600	149743600	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP10	6953	broad.mit.edu	37	6	167794545	167794545	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTE1	202500	broad.mit.edu	37	6	44254321	44254321	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTEX1D1	200132	broad.mit.edu	37	1	67241989	67241989	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD10	126668	broad.mit.edu	37	1	154516358	154516358	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD1	56165	broad.mit.edu	37	10	115961127	115961127	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD3	81550	broad.mit.edu	37	13	61103100	61103100	+	Missense_Mutation	SNP	A	T	T	rs151029002		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179562685	179562685	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-	rs140076465	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151748494	151748494	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151752281	151752281	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD2	8463	broad.mit.edu	37	19	49854528	49854528	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD3	7005	broad.mit.edu	37	6	35444602	35444602	+	Intron	DEL	T	-	-	rs35575806		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	121000422	121000422	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	121035956	121035956	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	121035958	121035958	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEC	7006	broad.mit.edu	37	4	48173303	48173303	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEK	7010	broad.mit.edu	37	9	27133513	27133513	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEK	7010	broad.mit.edu	37	9	27148053	27148055	+	Intron	DEL	TTA	-	-	rs143616982		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEK	7010	broad.mit.edu	37	9	27208971	27208971	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEK	7010	broad.mit.edu	37	9	27220023	27220023	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20872975	20872975	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET1	80312	broad.mit.edu	37	10	70332191	70332192	+	Nonsense_Mutation	DNP	GG	CT	CT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET1	80312	broad.mit.edu	37	10	70381974	70381989	+	Intron	DEL	CCTTCCCTCCTTCCTC	-	-	rs12777015	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX101	83639	broad.mit.edu	37	19	43910683	43910683	+	Intron	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX12	56158	broad.mit.edu	37	11	112039957	112039957	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56650685	56650685	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56694845	56694845	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX264	51368	broad.mit.edu	37	3	51727926	51727926	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX9	374618	broad.mit.edu	37	15	56680651	56680651	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50803497	50803497	+	Intron	SNP	T	A	A	rs138665670	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50810975	50810975	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2E	339488	broad.mit.edu	37	1	36044221	36044221	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2L1	29842	broad.mit.edu	37	2	121992753	121992753	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP1	7027	broad.mit.edu	37	13	114294377	114294377	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP2	7029	broad.mit.edu	37	3	141682713	141682713	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP2	7029	broad.mit.edu	37	3	141688761	141688761	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFEC	22797	broad.mit.edu	37	7	115580862	115580863	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFEC	22797	broad.mit.edu	37	7	115624568	115624568	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFEC	22797	broad.mit.edu	37	7	115725165	115725165	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFF2	7032	broad.mit.edu	37	21	43771095	43771095	+	Translation_Start_Site	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133472629	133472629	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB1I1	7041	broad.mit.edu	37	16	31484939	31484939	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB2	7042	broad.mit.edu	37	1	218607388	218607388	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBI	7045	broad.mit.edu	37	5	135387900	135387900	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR2	7048	broad.mit.edu	37	3	30691732	30691732	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92174405	92174405	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92184870	92184870	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92237561	92237561	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177571	89177571	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177587	89177587	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2309023	2309023	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43533162	43533162	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43558982	43558982	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133899126	133899126	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133925116	133925116	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133974012	133974013	+	Intron	INS	-	A	A	rs140576956	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133984821	133984822	+	Intron	INS	-	TT	TT	rs1554541		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133985095	133985095	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122745370	122745370	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC6	79228	broad.mit.edu	37	16	3076322	3076322	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRAP3	9967	broad.mit.edu	37	1	36757120	36757120	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRA	7067	broad.mit.edu	37	17	38240706	38240706	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRB	7068	broad.mit.edu	37	3	24193858	24193858	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRB	7068	broad.mit.edu	37	3	24299805	24299805	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD1	55901	broad.mit.edu	37	13	52960439	52960439	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	71457473	71457473	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11457254	11457254	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11485945	11485945	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11676453	11676453	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137748367	137748367	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137814281	137814281	+	Missense_Mutation	SNP	G	A	A	rs147127072	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137969598	137969599	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137990656	137990656	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137996972	137996972	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138110802	138110802	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138413070	138413070	+	Splice_Site	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32617896	32617897	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32617977	32617977	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156353250	156353250	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156378688	156378688	+	Missense_Mutation	SNP	C	A	A	rs55920848	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMM50	92609	broad.mit.edu	37	19	39973720	39973720	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMP1	7076	broad.mit.edu	37	X	47445945	47445945	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAGL1	64129	broad.mit.edu	37	1	32042825	32042825	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAG	27283	broad.mit.edu	37	6	54216086	54216086	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAG	27283	broad.mit.edu	37	6	54219198	54219198	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	30024753	30024753	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164394574	164394574	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE4	7091	broad.mit.edu	37	9	82300184	82300184	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE4	7091	broad.mit.edu	37	9	82317180	82317180	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK1	9874	broad.mit.edu	37	2	171871453	171871453	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60679594	60679594	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60683536	60683536	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166910616	166910616	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98129814	98129814	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35711511	35711511	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	62949836	62949836	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	62993236	62993236	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63032754	63032754	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63055787	63055787	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63128063	63128063	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR2	7097	broad.mit.edu	37	4	154624011	154624011	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR8	51311	broad.mit.edu	37	X	12924764	12924764	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM2D2	83877	broad.mit.edu	37	8	38848892	38848892	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM6SF2	53345	broad.mit.edu	37	19	19381037	19381037	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF2	9375	broad.mit.edu	37	13	100188942	100188942	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF4	9777	broad.mit.edu	37	20	30752939	30752939	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75445692	75445692	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC6	11322	broad.mit.edu	37	17	76115372	76115372	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO1	54499	broad.mit.edu	37	1	165712568	165712568	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO5A	145942	broad.mit.edu	37	15	38237529	38237529	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO7	79613	broad.mit.edu	37	16	68877497	68877497	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED10P1	286102	broad.mit.edu	37	8	146220352	146220352	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED10	10972	broad.mit.edu	37	14	75618688	75618688	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED3	23423	broad.mit.edu	37	15	79614151	79614151	+	Intron	SNP	A	G	G	rs112628527		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED9	54732	broad.mit.edu	37	5	177020500	177020500	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF1	8577	broad.mit.edu	37	9	103300008	103300009	+	Intron	DEL	AT	-	-	rs143129911		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF2	23671	broad.mit.edu	37	2	192862884	192862884	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM104	54868	broad.mit.edu	37	17	72784942	72784942	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44403889	44403889	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44537325	44537325	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44642420	44642420	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM131	23505	broad.mit.edu	37	2	98443747	98443747	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126128773	126128773	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126135490	126135490	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132C	92293	broad.mit.edu	37	12	128952631	128952631	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129558885	129558885	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129566496	129566496	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129784960	129784960	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129785507	129785507	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	130231722	130231723	+	Intron	INS	-	CTCCTTCTCCCTCCTCCCG	CTCCTTCTCCCTCCTCCCG	rs149346895	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM133	83935	broad.mit.edu	37	11	100863141	100863141	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM135	65084	broad.mit.edu	37	11	86868446	86868446	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM135	65084	broad.mit.edu	37	11	86972003	86972003	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM135	65084	broad.mit.edu	37	11	87024442	87024442	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM136	219902	broad.mit.edu	37	11	120198204	120198204	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM138	51524	broad.mit.edu	37	11	61133627	61133627	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM143	55260	broad.mit.edu	37	19	48867322	48867322	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM161A	54929	broad.mit.edu	37	19	19243349	19243349	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM161B	153396	broad.mit.edu	37	5	87521702	87521702	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM163	81615	broad.mit.edu	37	2	135316183	135316183	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM168	64418	broad.mit.edu	37	7	112407239	112407239	+	3'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM169	92691	broad.mit.edu	37	2	216964965	216964965	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM177	80775	broad.mit.edu	37	2	120438478	120438478	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM177	80775	broad.mit.edu	37	2	120438500	120438500	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM178	130733	broad.mit.edu	37	2	39944434	39944434	+	3'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM185A	84548	broad.mit.edu	37	X	148690401	148690401	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM186	25880	broad.mit.edu	37	16	8890542	8890542	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM18	129787	broad.mit.edu	37	2	675556	675556	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM192	201931	broad.mit.edu	37	4	166024032	166024032	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15426933	15426933	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15433805	15433805	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130724992	130724992	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130734868	130734868	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM207	131920	broad.mit.edu	37	3	190167608	190167608	+	5'UTR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM209	84928	broad.mit.edu	37	7	129810366	129810366	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM231	79583	broad.mit.edu	37	16	75579318	75579318	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74329881	74329881	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74345683	74345683	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74365095	74365095	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM40	55287	broad.mit.edu	37	3	12785492	12785492	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM44	93109	broad.mit.edu	37	3	194330596	194330596	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM51	55092	broad.mit.edu	37	1	15494965	15494965	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM51	55092	broad.mit.edu	37	1	15519468	15519468	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM55B	90809	broad.mit.edu	37	14	20926799	20926799	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM55B	90809	broad.mit.edu	37	14	20929045	20929045	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM62	80021	broad.mit.edu	37	15	43441153	43441154	+	Intron	DNP	GG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM71	137835	broad.mit.edu	37	8	133764277	133764277	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM71	137835	broad.mit.edu	37	8	133771050	133771050	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM84	283673	broad.mit.edu	37	15	69372418	69372418	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM84	283673	broad.mit.edu	37	15	69383003	69383003	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87B	84910	broad.mit.edu	37	2	112824744	112824744	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMIGD2	126259	broad.mit.edu	37	19	4297889	4297889	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMOD3	29766	broad.mit.edu	37	15	52181289	52181289	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11B	132724	broad.mit.edu	37	4	69094994	69094994	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11B	132724	broad.mit.edu	37	4	69101862	69101862	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS12	283471	broad.mit.edu	37	12	51252735	51252735	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS12	283471	broad.mit.edu	37	12	51281356	51281356	+	3'UTR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS4	56649	broad.mit.edu	37	11	117979715	117979715	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS6	164656	broad.mit.edu	37	22	37494471	37494471	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS9	360200	broad.mit.edu	37	19	2408556	2408556	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC4	84899	broad.mit.edu	37	13	101287161	101287161	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC4	84899	broad.mit.edu	37	13	101321050	101321050	+	Splice_Site	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP6	7130	broad.mit.edu	37	2	152235858	152235858	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP8L3	388121	broad.mit.edu	37	15	51396950	51396950	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF4	7293	broad.mit.edu	37	1	1147505	1147505	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF8	943	broad.mit.edu	37	1	12170100	12170100	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF9	3604	broad.mit.edu	37	1	7981040	7981040	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF9	3604	broad.mit.edu	37	1	7998852	7998852	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF10	8743	broad.mit.edu	37	3	172229317	172229317	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF12	8742	broad.mit.edu	37	17	7460715	7460715	+	3'UTR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF4	7292	broad.mit.edu	37	1	173155714	173155714	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS2	80351	broad.mit.edu	37	10	93600486	93600486	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74835217	74835217	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74835229	74835229	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74858201	74858201	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74957721	74957721	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT2	7139	broad.mit.edu	37	1	201334856	201334856	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT3	7140	broad.mit.edu	37	11	1953717	1953717	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175048527	175048527	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175048830	175048830	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175049252	175049252	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175068760	175068760	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175087625	175087625	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175097746	175097746	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6A	27327	broad.mit.edu	37	16	24741476	24741476	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175292346	175292346	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175323662	175323662	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175331784	175331784	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175332651	175332651	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175360254	175360254	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175372735	175372735	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175401857	175401857	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175454605	175454605	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175647539	175647539	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175650536	175650536	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175668639	175668639	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175684152	175684152	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175685653	175685653	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218674516	218674516	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218677108	218677108	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218695175	218695175	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218712332	218712332	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47336694	47336694	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32052312	32052312	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32065179	32065179	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L1	10040	broad.mit.edu	37	17	52978094	52978094	+	5'UTR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L1	10040	broad.mit.edu	37	17	52978152	52978152	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L1	10040	broad.mit.edu	37	17	52993034	52993034	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOPBP1	11073	broad.mit.edu	37	3	133362840	133362840	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX4	9878	broad.mit.edu	37	14	21945287	21945287	+	5'Flank	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53AIP1	63970	broad.mit.edu	37	11	128807720	128807720	+	5'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53I3	9540	broad.mit.edu	37	2	24307210	24307234	+	Intron	DEL	ACAGGGCAGGGCAGGGCAGGACAGG	-	-	rs72049316	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577156	7577156	+	Splice_Site	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579375	7579375	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPBG	7162	broad.mit.edu	37	6	83075627	83075627	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113698027	113698027	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPD52L2	7165	broad.mit.edu	37	20	62514230	62514230	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144288742	144288742	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM2	7169	broad.mit.edu	37	9	35689309	35689309	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM4	7171	broad.mit.edu	37	19	16204635	16204635	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPPP2	122664	broad.mit.edu	37	14	21498370	21498372	+	5'UTR	DEL	CTC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRG1	285386	broad.mit.edu	37	3	188727703	188727703	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRG1	285386	broad.mit.edu	37	3	188748486	188748486	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRXL	348825	broad.mit.edu	37	3	13976897	13976897	+	5'Flank	SNP	G	C	C	rs150547392	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2P3	220115	broad.mit.edu	37	13	53096806	53096806	+	RNA	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	19997208	19997208	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20039207	20039207	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10919357	10919357	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10952930	10952930	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP1	26146	broad.mit.edu	37	2	239246850	239246850	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209943814	209943815	+	Intron	DEL	GT	-	-	rs34097069		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42242491	42242491	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC6B	122553	broad.mit.edu	37	14	39626613	39626613	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141033824	141033824	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141359742	141359742	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123539850	123539850	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123545305	123545305	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123714767	123714767	+	Splice_Site	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML1	340205	broad.mit.edu	37	6	41117732	41117732	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML2	79865	broad.mit.edu	37	6	41159921	41159921	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML2	79865	broad.mit.edu	37	6	41165996	41165996	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML3	340206	broad.mit.edu	37	6	41185007	41185007	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42283959	42283959	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72674336	72674336	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72704945	72704945	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72774459	72774459	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72774742	72774742	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72947332	72947332	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30128459	30128459	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM16L	147166	broad.mit.edu	37	17	18610144	18610144	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM16L	147166	broad.mit.edu	37	17	18631109	18631109	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM21	6737	broad.mit.edu	37	11	4411068	4411068	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM25	7706	broad.mit.edu	37	17	54978620	54978620	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM29	23650	broad.mit.edu	37	11	119983252	119983252	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM29	23650	broad.mit.edu	37	11	119986053	119986053	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM31	11074	broad.mit.edu	37	6	30071127	30071127	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM33	51592	broad.mit.edu	37	1	114970493	114970493	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM37	4591	broad.mit.edu	37	17	57128626	57128626	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM3	10612	broad.mit.edu	37	11	6472743	6472743	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM40	135644	broad.mit.edu	37	6	30115104	30115104	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM44	54765	broad.mit.edu	37	11	35738647	35738647	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55032309	55032309	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55032609	55032609	+	Missense_Mutation	SNP	C	A	A	rs146290222	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55036730	55036730	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM50	135892	broad.mit.edu	37	7	72730668	72730668	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248023967	248023967	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248039156	248039156	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM67	440730	broad.mit.edu	37	1	231337128	231337128	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM9	114088	broad.mit.edu	37	14	51561429	51561429	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML1	339976	broad.mit.edu	37	4	189065004	189065004	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189022476	189022476	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189025966	189025966	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIOBP	11078	broad.mit.edu	37	22	38155174	38155175	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14194008	14194009	+	Intron	DEL	GT	-	-	rs141205862		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14378052	14378052	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230693988	230693988	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230723819	230723819	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP13	9319	broad.mit.edu	37	5	916273	916273	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT2B	79979	broad.mit.edu	37	X	100278330	100278330	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72950138	72950138	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72959357	72959357	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72974025	72974025	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4AP	26133	broad.mit.edu	37	20	33603840	33603840	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38229207	38229207	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC6	7225	broad.mit.edu	37	11	101374793	101374793	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC6	7225	broad.mit.edu	37	11	101374826	101374827	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31342759	31342759	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45774530	45774530	+	Splice_Site	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45838357	45838357	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73478071	73478071	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	74039979	74039979	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49691751	49691751	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77386753	77386753	+	Splice_Site	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77391106	77391106	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234851454	234851454	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV1	7442	broad.mit.edu	37	17	3470119	3470119	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV1	7442	broad.mit.edu	37	17	3483704	3483704	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV1	7442	broad.mit.edu	37	17	3483929	3483929	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV2	51393	broad.mit.edu	37	17	16338250	16338250	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142611969	142611969	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142627252	142627252	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98556869	98556869	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98558800	98558800	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRUB1	142940	broad.mit.edu	37	10	116735031	116735031	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRYX3	136541	broad.mit.edu	37	7	141952058	141952058	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSEN34	79042	broad.mit.edu	37	19	54697322	54697322	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA13	114960	broad.mit.edu	37	7	130356694	130356694	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHB	7252	broad.mit.edu	37	1	115576687	115576687	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81594323	81594324	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81606050	81606051	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51601111	51601111	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51623735	51623735	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51682490	51682490	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51882709	51882709	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51892585	51892585	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768309	31768309	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31787938	31787938	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSKS	60385	broad.mit.edu	37	19	50245113	50245113	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSNARE1	203062	broad.mit.edu	37	8	143412205	143412205	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN18	90139	broad.mit.edu	37	11	44927878	44927878	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN33	340348	broad.mit.edu	37	7	128806761	128806761	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSTD2	158427	broad.mit.edu	37	9	100365094	100365094	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43220497	43220497	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43251477	43251477	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC13	79573	broad.mit.edu	37	1	231067694	231067694	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC13	79573	broad.mit.edu	37	1	231097014	231097014	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21A	199223	broad.mit.edu	37	3	39159675	39159675	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166797522	166797522	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC24	164118	broad.mit.edu	37	1	156552367	156552367	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC26	79989	broad.mit.edu	37	7	138849886	138849886	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC26	79989	broad.mit.edu	37	7	138872393	138872393	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC28	23331	broad.mit.edu	37	22	28459511	28459511	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC29	83894	broad.mit.edu	37	4	147824904	147824904	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC31	64427	broad.mit.edu	37	2	74717142	74717143	+	Intron	DNP	CC	TA	TA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC31	64427	broad.mit.edu	37	2	74718475	74718475	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC39A	22996	broad.mit.edu	37	1	51774925	51774925	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC39B	158219	broad.mit.edu	37	9	15185427	15185427	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7B	145567	broad.mit.edu	37	14	91110622	91110625	+	Intron	DEL	CACG	-	-	rs147942996	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89343612	89343613	+	Intron	DNP	TG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117602776	117602776	+	5'Flank	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL11	158135	broad.mit.edu	37	9	124745861	124745861	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL2	83887	broad.mit.edu	37	6	167753560	167753560	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL5	23093	broad.mit.edu	37	14	76329864	76329864	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL6	284076	broad.mit.edu	37	17	46847394	46847394	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL6	284076	broad.mit.edu	37	17	46862326	46862326	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL6	284076	broad.mit.edu	37	17	46878869	46878869	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179443955	179443955	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179454551	179454551	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179467201	179467201	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179471967	179471967	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179472330	179472330	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179473550	179473550	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179500193	179500193	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179537183	179537183	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179542669	179542669	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179576158	179576158	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179583275	179583275	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179584652	179584652	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179590626	179590626	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179592126	179592126	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179611074	179611074	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179621360	179621360	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179638834	179638834	+	Missense_Mutation	SNP	C	A	A	rs75031300	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179640518	179640519	+	Missense_Mutation	DNP	CA	TC	TC			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179655575	179655575	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH1	57348	broad.mit.edu	37	19	54940550	54940550	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH2	94015	broad.mit.edu	37	17	72233660	72233660	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH2	94015	broad.mit.edu	37	17	72248390	72248390	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA1C	84790	broad.mit.edu	37	12	49666756	49666756	+	Nonsense_Mutation	SNP	G	T	T	rs146417733		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3D	113457	broad.mit.edu	37	2	132233854	132233855	+	Intron	DNP	CG	GA	GA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA4B	80086	broad.mit.edu	37	2	220136562	220136562	+	3'UTR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB1	81027	broad.mit.edu	37	20	57594367	57594367	+	5'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB8	347688	broad.mit.edu	37	10	94595	94595	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP1	7287	broad.mit.edu	37	6	35477800	35477800	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP1	7287	broad.mit.edu	37	6	35480576	35480576	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP2	7288	broad.mit.edu	37	19	49391110	49391110	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP2	7288	broad.mit.edu	37	19	49399614	49399614	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158873181	158873181	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158882789	158882789	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWF1	5756	broad.mit.edu	37	12	44196110	44196110	+	Silent	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC11	51061	broad.mit.edu	37	16	11782228	11782228	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37916347	37916347	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37924709	37924709	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC5	81567	broad.mit.edu	37	6	7905125	7905125	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	88911944	88911944	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYSND1	219743	broad.mit.edu	37	10	71899571	71899571	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72242666	72242666	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1	55253	broad.mit.edu	37	7	66520749	66520749	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UACA	55075	broad.mit.edu	37	15	70968984	70968984	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA2	10054	broad.mit.edu	37	19	34934950	34934950	+	Intron	DEL	T	-	-	rs34669674		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA3	9039	broad.mit.edu	37	3	69105182	69105182	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA3	9039	broad.mit.edu	37	3	69113213	69113213	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAC1	10422	broad.mit.edu	37	9	138838168	138838168	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2L	9898	broad.mit.edu	37	1	154207765	154207765	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2L	9898	broad.mit.edu	37	1	154228083	154228083	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBC	7316	broad.mit.edu	37	12	125398153	125398153	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2G1	7326	broad.mit.edu	37	17	4205574	4205588	+	Intron	DEL	CACGGGGAAGAACAG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2T	29089	broad.mit.edu	37	1	202304773	202304773	+	Splice_Site	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3A	7337	broad.mit.edu	37	15	25601070	25601071	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	156976595	156976595	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	157023956	157023956	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4A	9354	broad.mit.edu	37	11	118239210	118239210	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10119482	10119482	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBFD1	56061	broad.mit.edu	37	16	23570949	23570949	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN3	50613	broad.mit.edu	37	11	5530706	5530706	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLNL	143630	broad.mit.edu	37	11	5536215	5536215	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR1	197131	broad.mit.edu	37	15	43351858	43351858	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42541760	42541760	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19442079	19442079	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBTD2	92181	broad.mit.edu	37	5	171681485	171681485	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBTFL1	642623	broad.mit.edu	37	11	89819134	89819134	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCK2	7371	broad.mit.edu	37	1	165865257	165865257	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCK2	7371	broad.mit.edu	37	1	165865547	165865547	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCK2	7371	broad.mit.edu	37	1	165865709	165865709	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCN3	114131	broad.mit.edu	37	10	5412545	5412545	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGDH	7358	broad.mit.edu	37	4	39505482	39505482	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A1	54658	broad.mit.edu	37	2	234669236	234669236	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A5	54579	broad.mit.edu	37	2	234663457	234663457	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B11	10720	broad.mit.edu	37	4	70073882	70073882	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70360982	70360982	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A2	167127	broad.mit.edu	37	5	36035779	36035779	+	3'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A2	167127	broad.mit.edu	37	5	36055821	36055821	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF2	115426	broad.mit.edu	37	9	6460548	6460548	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF2	115426	broad.mit.edu	37	9	6504600	6504600	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK2	9706	broad.mit.edu	37	17	19746608	19746608	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41581043	41581044	+	Intron	DEL	TG	-	-	rs150786446		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41757064	41757064	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41796092	41796092	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43529799	43529799	+	Silent	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20357559	20357559	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20362075	20362075	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17750387	17750387	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17750470	17750470	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17756509	17756509	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35370197	35370197	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35381256	35381256	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35403605	35403606	+	Intron	INS	-	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54342713	54342713	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54542315	54542315	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54704570	54704570	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54792901	54792901	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13D	201294	broad.mit.edu	37	17	73832211	73832211	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13D	201294	broad.mit.edu	37	17	73839092	73839092	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33475970	33475970	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33501191	33501191	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176258747	176258747	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5B	219699	broad.mit.edu	37	10	73048253	73048253	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5CL	222643	broad.mit.edu	37	6	41001558	41001558	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96090247	96090247	+	3'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35541222	35541222	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210654357	210654357	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158922130	158922130	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRB	7381	broad.mit.edu	37	8	97247848	97247848	+	5'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB1	9875	broad.mit.edu	37	21	33756771	33756771	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URGCP	55665	broad.mit.edu	37	7	43958420	43958420	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215808100	215808100	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215914668	215914669	+	Intron	DNP	CA	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215940052	215940052	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215955379	215955379	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216052420	216052420	+	Silent	SNP	G	T	T	rs111033506		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216074110	216074110	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216390989	216390989	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216400573	216400573	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216405275	216405275	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216420601	216420601	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216420688	216420688	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216464504	216464504	+	Intron	DEL	A	-	-	rs76594975		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216495271	216495271	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216498811	216498811	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216570777	216570777	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216591838	216591839	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USO1	8615	broad.mit.edu	37	4	76703978	76703978	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179419013	179419013	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP22	23326	broad.mit.edu	37	17	20908310	20908310	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55559452	55559452	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17135192	17135192	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17135194	17135194	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23099057	23099057	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78181354	78181354	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61541957	61541958	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP37	57695	broad.mit.edu	37	2	219320359	219320359	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP37	57695	broad.mit.edu	37	2	219346744	219346744	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP46	64854	broad.mit.edu	37	4	53500468	53500468	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP48	84196	broad.mit.edu	37	1	22016372	22016372	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP4	7375	broad.mit.edu	37	3	49373056	49373056	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP5	8078	broad.mit.edu	37	12	6965537	6965537	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP5	8078	broad.mit.edu	37	12	6967481	6967481	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6NL	9712	broad.mit.edu	37	10	11531029	11531029	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144806607	144806607	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144852162	144852162	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144871969	144871969	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTS2D	257313	broad.mit.edu	37	3	190986194	190986194	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTS2	10911	broad.mit.edu	37	1	7907835	7907835	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UVRAG	7405	broad.mit.edu	37	11	75760867	75760867	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106715267	106715267	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106728958	106728958	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106739695	106739695	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXT	8409	broad.mit.edu	37	X	47517012	47517012	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXT	8409	broad.mit.edu	37	X	47517120	47517121	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	102336165	102336165	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	102427752	102427752	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	10496945	10496947	+	IGR	DEL	CTT	-	-	rs151034386		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107246893	107246893	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107451900	107451901	+	IGR	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	10919270	10919270	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	110106868	110106868	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	110315481	110315481	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	110326604	110326605	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	110983530	110983530	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111021340	111021340	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	112902557	112902557	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	113017734	113017734	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	122509992	122509992	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	124642	124642	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	126599222	126599222	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	126839	126839	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	127046839	127046839	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	127108336	127108336	+	IGR	DEL	G	-	-	rs34350634		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	130164111	130164112	+	IGR	DEL	GG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	130698615	130698615	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132114519	132114519	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132259744	132259744	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132259781	132259781	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132299087	132299087	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132541184	132541184	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	133577664	133577664	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	13430005	13430005	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15029147	15029147	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15801314	15801314	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	16156083	16156083	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	16396474	16396474	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	16455104	16455104	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	16589341	16589341	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	17619705	17619705	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	17620139	17620139	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	18409829	18409829	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	18417893	18417893	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	1846544	1846544	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19024950	19024950	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19349962	19349962	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19414216	19414223	+	IGR	DEL	TTCTTTCC	-	-	rs59761832	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	20639423	20639423	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	20891628	20891628	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	20893788	20893788	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	20893804	20893804	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	20939516	20939516	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	20939845	20939845	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	2146462	2146463	+	IGR	INS	-	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	21537098	21537098	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	22409311	22409311	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	23144096	23144096	+	IGR	SNP	C	T	T	rs150159878	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	23145286	23145286	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	23585622	23585622	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	28663070	28663071	+	IGR	INS	-	A	A	rs143538165		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	2875511	2875511	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	29029168	29029171	+	IGR	DEL	CTCT	-	-	rs56300405		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	29134867	29134867	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	29274180	29274180	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30271919	30271919	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30272759	30272759	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30272772	30272779	+	IGR	DEL	GAAGGAGG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31956866	31956866	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	32399448	32399448	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36171492	36171492	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36171630	36171630	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37210896	37210896	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37284066	37284066	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37691116	37691116	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37705581	37705581	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37812345	37812345	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37817442	37817442	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37823474	37823474	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37823676	37823676	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37853272	37853272	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37879608	37879608	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38172662	38172662	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38536870	38536870	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38599214	38599214	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	39006455	39006455	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3976198	3976199	+	IGR	DEL	CT	-	-	rs67495033		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3990519	3990519	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42640813	42640813	+	IGR	SNP	G	C	C	rs71503942	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42651966	42651966	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42658278	42658278	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42772301	42772301	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	44359277	44359277	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	44481585	44481585	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	44842003	44842003	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	44910357	44910357	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	4509452	4509452	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	4557811	4557811	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46204237	46204237	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	48586130	48586130	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	50462902	50462902	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52025449	52025449	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52419442	52419442	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52445047	52445047	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52683190	52683190	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52683192	52683192	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	55180145	55180145	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	57498485	57498485	+	IGR	DEL	A	-	-	rs59159962		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	57972980	57972980	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	58669029	58669029	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	63111107	63111107	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	64473892	64473892	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	64672493	64672493	+	IGR	DEL	C	-	-	rs11305281		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	6679283	6679283	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	72720753	72720754	+	IGR	DEL	GA	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	77236436	77236436	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	78606335	78606335	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	80529307	80529307	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	80653163	80653163	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	80658663	80658663	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	80658985	80658985	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	81253943	81253943	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8203860	8203860	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	82536675	82536675	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	85340628	85340628	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	86998993	86998993	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	87090045	87090045	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	88964775	88964775	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	92114074	92114074	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	92347645	92347645	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	92814222	92814222	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	93426394	93426394	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	93426596	93426596	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	94505833	94505833	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	9651623	9651623	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	97926626	97926626	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	99853851	99853851	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	99857799	99857799	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	100453154	100453154	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	100537408	100537408	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	101464814	101464814	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	102809111	102809111	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104857228	104857228	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	106000093	106000093	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	106003546	106003546	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	107852319	107852319	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	109203598	109203598	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	109432806	109432806	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	109860934	109860934	+	IGR	DEL	T	-	-	rs5794660		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	110896495	110896495	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	111105254	111105254	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	11129667	11129667	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	112217254	112217254	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	112526184	112526184	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	112595294	112595294	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	112795380	112795381	+	IGR	DEL	CC	-	-	rs112684930		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	113511252	113511252	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	113662178	113662178	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114652346	114652346	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114654962	114654962	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114675099	114675099	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114839971	114839971	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114948484	114948485	+	IGR	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115660412	115660412	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115823106	115823106	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	116237023	116237023	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	116489255	116489255	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119474777	119474777	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119667802	119667802	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119704131	119704131	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119730392	119730392	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119733872	119733872	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121109195	121109195	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121576628	121576628	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121829786	121829786	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122489623	122489623	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	123811402	123811402	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124086058	124086058	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124096449	124096449	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124134859	124134859	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124331284	124331284	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	125937622	125937622	+	IGR	SNP	C	T	T	rs149565444	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	126016502	126016502	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	12625450	12625451	+	IGR	DEL	TC	-	-	rs72141862		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	126972118	126972118	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127296210	127296210	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127418243	127418243	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127676014	127676014	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127678656	127678656	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127692876	127692879	+	IGR	DEL	ACAG	-	-	rs139484450		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127906769	127906769	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127954445	127954445	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	128495026	128495026	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	129212094	129212094	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	129212137	129212137	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130455367	130455367	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130490816	130490816	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130493530	130493530	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130561163	130561163	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130685423	130685423	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130991799	130991799	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131026029	131026029	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13107360	13107360	+	IGR	DEL	T	-	-	rs79647275		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131085047	131085047	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131204722	131204722	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	133416596	133416596	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	133570225	133570225	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	134650529	134650529	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	134654218	134654218	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13603775	13603775	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	14446936	14446936	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15009884	15009884	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15066383	15066383	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15118443	15118443	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15616078	15616078	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15805498	15805498	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15857813	15857813	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15927941	15927941	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18218064	18218064	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18252900	18252900	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18955269	18955269	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	21920917	21920917	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	22334603	22334603	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23167607	23167608	+	IGR	INS	-	TC	TC	rs140329048	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23399236	23399236	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23426623	23426623	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23752434	23752434	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23761459	23761459	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23914401	23914401	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23997545	23997545	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	24498170	24498171	+	IGR	INS	-	AAAC	AAAC	rs149873955	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	25162254	25162254	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	25787312	25787313	+	IGR	INS	-	T	T	rs142108132	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	25896587	25896587	+	IGR	DEL	A	-	-	rs77466449		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	28688562	28688562	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	28810400	28810401	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	28811063	28811064	+	IGR	INS	-	T	T	rs147247017	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	28940488	28940488	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29141036	29141036	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29279814	29279814	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29816945	29816945	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29859856	29859856	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30712353	30712353	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30766880	30766880	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30772131	30772131	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	32194860	32194860	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	35831431	35831432	+	IGR	INS	-	CA	CA	rs151160843	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	35911116	35911116	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	36860620	36860620	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	37062582	37062582	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	37157799	37157799	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	38535671	38535671	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	38547919	38547919	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	38791868	38791868	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39183299	39183299	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39307473	39307474	+	IGR	INS	-	C	C	rs148076621	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39622390	39622390	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39841123	39841123	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	40106163	40106163	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	41568528	41568529	+	IGR	DNP	CA	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	41681475	41681475	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	41999039	41999039	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	42191018	42191019	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	42412623	42412623	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	42536627	42536627	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	42556218	42556218	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	42728278	42728278	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43032634	43032634	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43033022	43033022	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43107182	43107182	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43189863	43189863	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43536911	43536911	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	44440375	44440375	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	44558452	44558452	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4465241	4465241	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45102695	45102695	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45470387	45470388	+	IGR	INS	-	GT	GT	rs143618602	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45611610	45611610	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48249286	48249286	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48249556	48249556	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48342971	48342972	+	IGR	INS	-	A	A	rs143296079	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48377765	48377768	+	IGR	DEL	CAGG	-	-	rs113906591		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48454151	48454151	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48518288	48518288	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48534570	48534570	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48928670	48928670	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48973336	48973336	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48997080	48997080	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48997083	48997083	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48997323	48997323	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49013553	49013553	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49103364	49103364	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49103837	49103837	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49104049	49104049	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49119988	49119988	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49120067	49120067	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49120523	49120523	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49121476	49121476	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49372886	49372886	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49854507	49854507	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49854869	49854869	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49865465	49865465	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49865497	49865497	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49895326	49895326	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49898120	49898120	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50129931	50129931	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5035258	5035258	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5068775	5068775	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51426182	51426182	+	IGR	SNP	C	A	A	rs5000498		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51444257	51444257	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55069976	55069976	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55093652	55093652	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55093952	55093952	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55156140	55156142	+	IGR	DEL	ACT	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55189539	55189542	+	IGR	DEL	TTCC	-	-	rs71752565	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55258442	55258442	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55259174	55259174	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55277691	55277691	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55351779	55351779	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55822324	55822324	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55978368	55978368	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56143090	56143090	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56268316	56268316	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56294742	56294742	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56473704	56473704	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56508041	56508041	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56543393	56543393	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56693064	56693064	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56911404	56911404	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56919233	56919233	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56971501	56971501	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57781629	57781629	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57958921	57958921	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57958970	57958970	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58059689	58059689	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58134215	58134215	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58189799	58189799	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58624958	58624958	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59055387	59055387	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59803257	59803257	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6015318	6015318	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6016158	6016158	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6117542	6117542	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	64940794	64940794	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	68391361	68391361	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	68965049	68965049	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	70077107	70077107	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71528074	71528074	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71870446	71870446	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	7246618	7246618	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	74449915	74449915	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	75074139	75074139	+	IGR	SNP	C	T	T	rs115453265	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	75972889	75972889	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	75996838	75996838	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	77024541	77024541	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	7805935	7805935	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79360693	79360693	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79361837	79361837	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79698360	79698360	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79839808	79839808	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79990646	79990646	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80014970	80014970	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80037741	80037741	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	8020643	8020644	+	IGR	INS	-	A	A	rs150661190		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80393200	80393201	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80746326	80746326	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80800300	80800300	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80821282	80821282	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80821284	80821284	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	8195969	8195969	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	82517448	82517448	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	8332051	8332051	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87303538	87303538	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87536327	87536327	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89467248	89467248	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89596112	89596112	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89608998	89608998	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89808315	89808315	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90615036	90615036	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91075569	91075570	+	IGR	INS	-	T	T	rs77394206		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91111383	91111383	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91208841	91208841	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91562803	91562803	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91612353	91612353	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91996433	91996433	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	92069461	92069461	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	92698783	92698783	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93600983	93600983	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93921671	93921671	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94373818	94373818	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94646246	94646246	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94647066	94647066	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94782798	94782798	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	95184752	95184752	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	95258147	95258148	+	IGR	DNP	GG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97456028	97456028	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	102929177	102929177	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	102947529	102947529	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	103060541	103060542	+	IGR	INS	-	T	T	rs138215166	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	103486786	103486786	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	105692128	105692128	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	10658699	10658699	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108451356	108451356	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108647927	108647927	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108756750	108756750	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	110868031	110868031	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	114135602	114135602	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	114850752	114850752	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115343861	115343861	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115449083	115449083	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115821620	115821620	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115852187	115852187	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	117803516	117803516	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	117869672	117869672	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	117871714	117871714	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	119093401	119093401	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	119206811	119206811	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	119303261	119303261	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127700024	127700024	+	IGR	DEL	A	-	-	rs78083936		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127812020	127812020	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128649146	128649146	+	IGR	SNP	C	A	A	rs150547589	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128837048	128837048	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	130427424	130427424	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	130472567	130472567	+	IGR	DEL	A	-	-	rs34849087		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	132152574	132152574	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	15138508	15138508	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	155268	155268	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	16437373	16437373	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	166619	166619	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	2140187	2140188	+	IGR	INS	-	TC	TC	rs139881300	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	23004198	23004198	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	23111609	23111609	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30030768	30030768	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30117777	30117777	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30986336	30986336	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31399085	31399085	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33138785	33138785	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33748079	33748079	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34318776	34318776	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	3443559	3443559	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34454776	34454776	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34458300	34458300	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34459440	34459440	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34461316	34461316	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34466586	34466586	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34468171	34468172	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34468886	34468886	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34497534	34497534	+	IGR	SNP	C	A	A	rs112757875		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34500679	34500679	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34757557	34757557	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38515215	38515215	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38515236	38515236	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38775634	38775634	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	3991877	3991878	+	IGR	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	4000933	4000933	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40814107	40814107	+	IGR	SNP	A	T	T	rs2114566	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40842318	40842318	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40842423	40842423	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40859163	40859163	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42040680	42040681	+	IGR	INS	-	G	G	rs150975561	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	4207913	4207913	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42390783	42390783	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43030869	43030869	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43167016	43167016	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43394373	43394374	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43429550	43429550	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43503010	43503010	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43699276	43699276	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43964247	43964247	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	47314812	47314812	+	IGR	DEL	T	-	-	rs78269644		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	47411442	47411442	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	48604136	48604136	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	48867646	48867646	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53109644	53109644	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53143654	53143654	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	5371637	5371637	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	54136656	54136656	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	54152375	54152375	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	54195181	54195181	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	54821552	54821552	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55678198	55678198	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55771079	55771079	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55974371	55974371	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	56008119	56008119	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58566388	58566388	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58715241	58715241	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58788725	58788725	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58839876	58839876	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58919097	58919097	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	59191944	59191944	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	60813980	60813980	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61544734	61544734	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61550	61551	+	IGR	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61972590	61972590	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61978309	61978309	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63398094	63398094	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68065817	68065817	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68431075	68431075	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68774366	68774366	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68847120	68847121	+	IGR	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	69512445	69512445	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	7181775	7181776	+	IGR	DEL	AA	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	7182795	7182795	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	72442472	72442472	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	72642026	72642026	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	73525302	73525302	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	7381127	7381127	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	73813716	73813716	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	7385075	7385075	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74058563	74058563	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74097572	74097572	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	75027598	75027598	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	75837414	75837414	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	76376976	76376976	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	7757103	7757103	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77656712	77656712	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	78003441	78003441	+	IGR	DEL	T	-	-	rs35377078		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	79187334	79187334	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80651726	80651726	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80706469	80706469	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8169666	8169666	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8314732	8314732	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	83709225	83709225	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	86008147	86008147	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	87868305	87868305	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88176866	88176866	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88597475	88597475	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	89395089	89395089	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	89641775	89641775	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	90430282	90430282	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	90436068	90436068	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	90840956	90840956	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	91334186	91334186	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	91653389	91653389	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	92781249	92781249	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	92988072	92988072	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	93453270	93453270	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	96828254	96828254	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	97591622	97591622	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98358695	98358695	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	101597027	101597027	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	101597449	101597449	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	103186131	103186132	+	IGR	INS	-	T	T	rs34813430		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	103906252	103906252	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	104025372	104025372	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	104652798	104652799	+	IGR	INS	-	TCTT	TCTT	rs143410440	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	104872703	104872703	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105049500	105049500	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105174796	105174796	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105176531	105176531	+	IGR	DEL	A	-	-	rs11313127		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105521590	105521591	+	IGR	INS	-	G	G	rs72519426		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105613235	105613235	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	106840999	106840999	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	106846275	106846276	+	IGR	INS	-	AAA	AAA	rs35046470		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	106848035	106848045	+	IGR	DEL	AGCACTAATCA	-	-	rs145598467		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	106943327	106943330	+	IGR	DEL	AGAG	-	-	rs831915	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	107261656	107261656	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	107315865	107315865	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	107423228	107423228	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	107440597	107440597	+	IGR	DEL	A	-	-	rs34766748		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	110215806	110215806	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	110520959	110520959	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111590530	111590530	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	112342825	112342830	+	IGR	DEL	ATACTC	-	-	rs71910926		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	113250051	113250052	+	IGR	INS	-	G	G	rs149240923	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19301068	19301068	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19931519	19931519	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	20138737	20138737	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22408105	22408105	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22462130	22462130	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22885534	22885534	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22889089	22889089	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	29566814	29566814	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	31584077	31584077	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	31652509	31652516	+	IGR	DEL	AAGGAAGA	-	-	rs148041842	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	32102715	32102715	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	37055225	37055225	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	38091517	38091517	+	IGR	DEL	T	-	-	rs35357005		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	39735067	39735067	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	39736431	39736431	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	40665874	40665874	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	40808231	40808231	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	40849724	40849724	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	40868203	40868204	+	IGR	INS	-	A	A	rs148521539	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	44882907	44882907	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	46904872	46904872	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	47698626	47698626	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	47906668	47906668	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	49445782	49445782	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	51742182	51742182	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53666454	53666454	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53917443	53917443	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53932030	53932030	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54334326	54334326	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54612380	54612380	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55869408	55869408	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56009925	56009925	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57057388	57057388	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57872023	57872023	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57889444	57889444	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57929279	57929279	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	58547221	58547221	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59103709	59103709	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59104890	59104890	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	60221212	60221212	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	60872963	60872963	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	60896894	60896894	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61211028	61211028	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61660580	61660580	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61772325	61772326	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61794357	61794357	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61795194	61795194	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	63626665	63626665	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	64845394	64845394	+	IGR	DEL	T	-	-	rs34349743		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65532434	65532434	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68482635	68482635	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68616899	68616899	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	70211202	70211202	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	71498333	71498334	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	71929505	71929505	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	71963061	71963061	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	72637040	72637040	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75110691	75110691	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75629728	75629728	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	76817724	76817724	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	77402068	77402071	+	IGR	DEL	GGAA	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	77560613	77560613	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	77562659	77562659	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	78021432	78021439	+	IGR	DEL	ATCCATCC	-	-	rs71203051		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	78235768	78235768	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	78267800	78267800	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79485012	79485012	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79814294	79814294	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	80494988	80494988	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	80505291	80505291	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	80591723	80591723	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	80615274	80615274	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	82030064	82030064	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	83397327	83397327	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	83397926	83397926	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	84772890	84772890	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	84773945	84773946	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	84797445	84797445	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86928108	86928108	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	87398592	87398592	+	IGR	DEL	A	-	-	rs141158035		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	87789129	87789130	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	87942796	87942796	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	87948616	87948616	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	89590790	89590791	+	IGR	INS	-	GAAG	GAAG	rs150882520	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	89673829	89673830	+	IGR	INS	-	AAAC	AAAC	rs139207948	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90474897	90474897	+	IGR	DEL	T	-	-	rs34575110		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90486204	90486204	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90644558	90644558	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91268146	91268146	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91416749	91416749	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91906176	91906176	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91987486	91987486	+	IGR	DEL	G	-	-	rs56729614		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	93581032	93581032	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	93788502	93788502	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	97784172	97784172	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101270696	101270696	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101396122	101396122	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101617115	101617115	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101779916	101779916	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101854165	101854166	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101959376	101959376	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	102070864	102070864	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	102072982	102072982	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19400586	19400586	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19422249	19422249	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19422253	19422253	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19422692	19422692	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19443599	19443599	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19443738	19443738	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19443790	19443790	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19443890	19443890	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19468546	19468546	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19500146	19500146	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19500195	19500195	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19537620	19537620	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19800421	19800421	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806542	19806542	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806869	19806869	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20034568	20034568	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20097103	20097104	+	IGR	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20097181	20097181	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20134508	20134508	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20134751	20134752	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20136841	20136842	+	IGR	DNP	CG	GA	GA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137363	20137363	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20138046	20138046	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147008	20147009	+	IGR	DNP	CC	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20182079	20182079	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20185988	20185988	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20201723	20201723	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20205476	20205476	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20243267	20243267	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20262918	20262918	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20269084	20269084	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20309057	20309057	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20363113	20363113	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20363466	20363466	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20399089	20399089	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20416617	20416617	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20417843	20417843	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20647587	20647587	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20698250	20698250	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20963272	20963272	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22032975	22032975	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22070390	22070390	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22196174	22196174	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25549720	25549720	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26084067	26084067	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26727572	26727572	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26758599	26758599	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28184848	28184848	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28885549	28885549	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	29314251	29314251	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	29314255	29314255	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	29417863	29417863	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	30897863	30897863	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	30934073	30934073	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	31932104	31932104	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	32433891	32433891	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	34669510	34669513	+	IGR	DEL	GATG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	35858091	35858091	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	35943774	35943774	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	36918983	36918983	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	38562379	38562379	+	IGR	DEL	A	-	-	rs78462990		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	38563845	38563845	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39439725	39439725	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39978747	39978747	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	41121763	41121763	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	41757800	41757800	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	42024780	42024780	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	42677324	42677324	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	42872872	42872872	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43312307	43312307	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43430231	43430231	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43744921	43744921	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43769493	43769493	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44202832	44202832	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44290298	44290299	+	IGR	DEL	AG	-	-	rs143121734		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44590014	44590014	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45330226	45330226	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45330228	45330228	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45334650	45334650	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	46300588	46300588	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48315872	48315872	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48503375	48503375	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49167414	49167414	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49740930	49740931	+	IGR	INS	-	GGTAT	GGTAT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49918316	49918316	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	51769437	51769437	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52224346	52224346	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52853422	52853422	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	53892133	53892133	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54361634	54361634	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54758558	54758558	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	55707457	55707457	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	58019655	58019655	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	58328144	58328145	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	58387218	58387218	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59583932	59583932	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	62298634	62298634	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	62691722	62691722	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	62691730	62691731	+	IGR	DNP	TT	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	66560938	66560938	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	70965593	70965593	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	71672519	71672519	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	71676078	71676078	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	71736213	71736213	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	74680671	74680671	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	75825227	75825227	+	IGR	DEL	T	-	-	rs35989695		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	76758033	76758033	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	76775645	76775645	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	78490311	78490311	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	78537649	78537649	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	78590401	78590401	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	80606744	80606745	+	IGR	DNP	CC	GA	GA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	81726558	81726558	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82128042	82128042	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82128948	82128948	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82535701	82535702	+	IGR	INS	-	TCCC	TCCC	rs28394171		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	83776265	83776265	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	83972473	83972473	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	84105299	84105299	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	84975754	84975754	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	86980065	86980065	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87295891	87295891	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87348682	87348682	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87625545	87625545	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	90122780	90122781	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	90227525	90227525	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	93368699	93368700	+	IGR	INS	-	TCTTCCTTCTCCTCCTCCTCC	TCTTCCTTCTCCTCCTCCTCC	rs146897982	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	94953558	94953558	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95100203	95100203	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95100385	95100385	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95355825	95355825	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95363423	95363424	+	IGR	INS	-	ATGC	ATGC	rs145889084		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96107086	96107086	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96338180	96338180	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96484494	96484494	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96634787	96634788	+	IGR	INS	-	A	A	rs138714950	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97519601	97519601	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97692334	97692334	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97694181	97694181	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97735328	97735328	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97829479	97829479	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97976131	97976131	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97976180	97976180	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97979543	97979543	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97980586	97980593	+	IGR	DEL	TTCCTTTT	-	-	rs71883285	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97995078	97995078	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97995088	97995088	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98196413	98196413	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98308772	98308772	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98315194	98315194	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98361980	98361980	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98362030	98362030	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98507883	98507883	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98889233	98889233	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99018008	99018008	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99077357	99077357	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99166461	99166461	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99219554	99219554	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99220538	99220538	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99224228	99224228	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99274921	99274921	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99417474	99417474	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99426922	99426922	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99819072	99819072	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102403587	102403587	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20134136	20134136	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20167716	20167716	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20192892	20192892	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20209147	20209147	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20267447	20267447	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20349832	20349832	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20404272	20404272	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20434400	20434400	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20446074	20446074	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20456538	20456538	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20456550	20456550	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20456825	20456825	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20480405	20480405	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20505991	20505991	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20509139	20509139	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20833003	20833003	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20858772	20858772	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20865245	20865245	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21009312	21009312	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21009876	21009876	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21918463	21918464	+	IGR	DEL	CA	-	-	rs150921370		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21922084	21922084	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22013047	22013047	+	IGR	SNP	C	G	G	rs4984049		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22123173	22123173	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22151361	22151361	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22151918	22151919	+	IGR	INS	-	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22152154	22152154	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22152178	22152178	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22386650	22386650	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22397924	22397924	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22400640	22400640	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22428529	22428529	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22432584	22432584	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22433804	22433804	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22435082	22435082	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22448410	22448410	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22448857	22448857	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22472858	22472858	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22483489	22483489	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22489917	22489917	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22490609	22490609	+	IGR	SNP	G	T	T	rs141026116	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22567012	22567012	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22567045	22567045	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22582461	22582461	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22691475	22691475	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23467097	23467097	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	24143761	24143761	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25913716	25913716	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	26173371	26173371	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	26596512	26596512	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	26609398	26609398	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	26654994	26654994	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	27924301	27924301	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	28702793	28702793	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30186391	30186391	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30433661	30433661	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	35591660	35591660	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	36310206	36310206	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	36392293	36392293	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	37783249	37783249	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	38065161	38065162	+	IGR	INS	-	CT	CT	rs149267858	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	39751519	39751519	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	41252557	41252557	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	45142561	45142561	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	46532525	46532525	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	46665712	46665712	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	46950163	46950163	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50041240	50041240	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50086560	50086560	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50088048	50088049	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50088302	50088302	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	53251839	53251839	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	53278426	53278426	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	54982287	54982287	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	55293754	55293754	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	55294415	55294415	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	57850268	57850268	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	58241286	58241286	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	58864233	58864233	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60258244	60258244	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60289220	60289220	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	61753823	61753823	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	62123115	62123115	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	68183077	68183077	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	70285915	70285915	+	IGR	SNP	A	G	G	rs112503739		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	70850012	70850012	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	71378896	71378896	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	72743567	72743567	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	74110862	74110862	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	77822441	77822441	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78003478	78003478	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78189751	78189751	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78191881	78191881	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78714093	78714093	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79025053	79025053	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79851593	79851593	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79852689	79852689	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	80554668	80554668	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	81469269	81469269	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	81677796	81677796	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	85724477	85724477	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	87585685	87585685	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	87664013	87664013	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88150904	88150904	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88819295	88819295	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88971305	88971305	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88972801	88972801	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	89027884	89027884	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	89331677	89331677	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	89533105	89533105	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	91594585	91594585	+	IGR	DEL	A	-	-	rs11330103		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	92220228	92220228	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	92829243	92829243	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	93799707	93799707	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96280792	96280792	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96537906	96537906	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97149220	97149220	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97170787	97170787	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97300453	97300453	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97301247	97301247	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97400921	97400921	+	IGR	DEL	A	-	-	rs111277229		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97685952	97685952	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97926665	97926665	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	10934334	10934334	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	11691585	11691585	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	13891880	13891880	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	17711873	17711873	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	18210211	18210211	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	19992693	19992693	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20168345	20168345	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20521018	20521018	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20605080	20605080	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26155046	26155046	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26216396	26216396	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26326879	26326879	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26524091	26524091	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26741689	26741689	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26779697	26779697	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	27041671	27041671	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29448636	29448636	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31985794	31985794	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32429098	32429098	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32456695	32456695	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32480469	32480469	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32830057	32830057	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32839010	32839010	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32848972	32848972	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32849042	32849042	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32849720	32849720	+	IGR	SNP	T	A	A	rs75098420		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32849742	32849742	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33038901	33038901	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33044591	33044591	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33390297	33390297	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33390588	33390588	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33401449	33401449	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33401640	33401640	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33453325	33453325	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33453329	33453329	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33497843	33497843	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33500511	33500512	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605621	33605621	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33654347	33654347	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33654349	33654349	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33730675	33730675	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33740651	33740651	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33816411	33816411	+	IGR	SNP	A	T	T	rs142323536	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33939019	33939019	+	IGR	DEL	C	-	-	rs113683091		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33939053	33939053	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33941852	33941852	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33973711	33973711	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34236178	34236178	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34320364	34320364	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	35229088	35229088	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46465114	46465114	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48531744	48531744	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48734748	48734748	+	IGR	SNP	A	C	C	rs149608823	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48751989	48751989	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	49270553	49270553	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51895536	51895536	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52689144	52689144	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	53396627	53396627	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	54371150	54371150	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	54613493	54613507	+	IGR	DEL	AGAGGAAGAAGAAGC	-	-	rs62034184	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	54919599	54919599	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55452256	55452256	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55470446	55470446	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55780775	55780776	+	IGR	DNP	CC	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55870518	55870518	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	56121599	56121599	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	57383128	57383128	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	58111955	58111955	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	58460877	58460878	+	IGR	DEL	AG	-	-	rs72437637		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59200817	59200817	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59619649	59619649	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59682022	59682022	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59927136	59927136	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60082798	60082798	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60207866	60207866	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60243615	60243615	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60674970	60674970	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60689552	60689552	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60862161	60862161	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61667191	61667191	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	63495092	63495092	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	64294781	64294781	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	64346018	64346018	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65269455	65269455	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65269459	65269459	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65315326	65315326	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65829918	65829918	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65890068	65890068	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65969609	65969609	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	66179668	66179668	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	66376789	66376789	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	66376791	66376791	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	66741315	66741315	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	69791837	69791837	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73550509	73550509	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73655885	73655885	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73748060	73748060	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73946559	73946560	+	IGR	DEL	TC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	75222770	75222771	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76100753	76100753	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	78123129	78123129	+	IGR	SNP	C	T	T	rs145231439	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	7830698	7830698	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	7830735	7830735	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79543509	79543509	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79690692	79690692	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79820536	79820536	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79912190	79912190	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79961644	79961644	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	80330159	80330159	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	84019	84019	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	8458217	8458217	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	8465812	8465812	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	84975298	84975298	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	8501276	8501276	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	85901940	85901940	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	85974219	85974219	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	86006230	86006230	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	86283622	86283622	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	86773007	86773007	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	86916362	86916362	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	9519074	9519077	+	IGR	DEL	AGAA	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	9685038	9685038	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	13161266	13161266	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	13766388	13766388	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20619864	20619864	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21222308	21222308	+	IGR	SNP	G	A	A	rs78609204	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21247397	21247397	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21533038	21533038	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21548871	21548871	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21552507	21552507	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22011887	22011887	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25274882	25274882	+	IGR	SNP	G	T	T	rs78440329		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25280148	25280148	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25410047	25410047	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26076785	26076785	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26078090	26078090	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30170159	30170159	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	31275854	31275854	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	32725769	32725769	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	32971798	32971798	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	33000295	33000295	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	33000872	33000872	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	33186600	33186600	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	36855227	36855227	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39061022	39061022	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39062892	39062892	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39484595	39484595	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	44323470	44323470	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51425818	51425818	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51458715	51458715	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51513325	51513325	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51547846	51547846	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52031085	52031085	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	53253669	53253669	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	53423891	53423891	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	54630011	54630011	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	54650547	54650547	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	54822450	54822450	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	54823967	54823967	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	54823969	54823969	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	55773491	55773491	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	55774761	55774761	+	IGR	SNP	C	A	A	rs151326571	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60217124	60217124	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60374355	60374355	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	6074010	6074010	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	63520718	63520718	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	66624631	66624632	+	IGR	DEL	TG	-	-	rs78155060		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	66809176	66809176	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	69015637	69015637	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	71683619	71683619	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	71725798	71725798	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	72599413	72599413	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	72603820	72603820	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	75635600	75635600	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	76475161	76475161	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	76510894	76510894	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	9798114	9798114	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11610488	11610488	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	12179652	12179652	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	12179655	12179655	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13826751	13826751	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14147477	14147477	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14221526	14221526	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14221627	14221627	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14361713	14361713	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14668462	14668462	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14680979	14680979	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15199327	15199327	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	19903142	19903142	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22319776	22319776	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22360160	22360160	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22476581	22476581	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22478444	22478444	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22497395	22497395	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22597000	22597000	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	23102737	23102737	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	23465567	23465567	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25466894	25466894	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25842798	25842799	+	IGR	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25929904	25929904	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26119915	26119916	+	IGR	DNP	CC	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26231590	26231590	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26231860	26231860	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26232957	26232957	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26379736	26379736	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26642623	26642624	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26676202	26676202	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26727005	26727005	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26937202	26937202	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26940797	26940798	+	IGR	INS	-	TAA	TAA	rs143557809	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	28264744	28264744	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	28635863	28635863	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	28867625	28867625	+	IGR	SNP	C	A	A	rs151099085	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29380139	29380139	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29542250	29542250	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29542565	29542565	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	31058556	31058556	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	32996765	32996765	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	35304116	35304116	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	35332420	35332420	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	37628790	37628790	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	37715923	37715923	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	38050024	38050024	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	38074948	38074948	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	38814968	38814969	+	IGR	INS	-	T	T	rs150737676	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39245206	39245206	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39298127	39298127	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39361740	39361740	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39398541	39398541	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39698408	39698408	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40711066	40711066	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	43881941	43881941	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	44054977	44054977	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	45182448	45182448	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	45523766	45523767	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	4719985	4719985	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49102056	49102056	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49371796	49371796	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49707608	49707608	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	51140917	51140917	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	51178296	51178296	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	51616589	51616589	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	53843055	53843056	+	IGR	DEL	TG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	53994255	53994255	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	53994353	53994353	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	54714115	54714115	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	54767461	54767461	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	54798532	54798532	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	54820270	54820270	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57561520	57561520	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57637475	57637475	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57864300	57864300	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58166747	58166747	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58330727	58330727	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58330791	58330791	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58330874	58330874	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58442219	58442219	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	60730636	60730637	+	IGR	INS	-	CCTCCA	CCTCCA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	60753942	60753943	+	IGR	INS	-	TTCC	TTCC	rs140616622	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	61240511	61240511	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	61333922	61333922	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	61485043	61485043	+	IGR	DEL	C	-	-	rs76476170	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	62220305	62220305	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	63354802	63354803	+	IGR	INS	-	G	G	rs140869940	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65624762	65624762	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	66241359	66241359	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	66958195	66958195	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	66995544	66995544	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	6779958	6779958	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68197247	68197247	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68207027	68207027	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68531756	68531756	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	71105428	71105428	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	71371159	71371160	+	IGR	DEL	TC	-	-	rs35910503		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	71435252	71435255	+	IGR	DEL	CTGT	-	-	rs34834305		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	72057467	72057467	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	73149880	73149880	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	73227710	73227711	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	73533308	73533308	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	74057816	74057819	+	IGR	DEL	TGTG	-	-	rs71950440		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75169776	75169776	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75583902	75583902	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75658	75658	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	76396308	76396309	+	IGR	DEL	GA	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	76466985	76466985	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	76610313	76610313	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	82875	82875	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	8434919	8434919	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	84985	84985	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	9079004	9079004	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	10190767	10190767	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15673555	15673555	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15775310	15775310	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15778090	15778090	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15981969	15981970	+	IGR	INS	-	A	A	rs149880706	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16090824	16090824	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20877695	20877695	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	21170704	21170704	+	IGR	DEL	A	-	-	rs147341936		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22471480	22471480	+	IGR	SNP	A	T	T	rs6511342		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22498436	22498436	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22499969	22499969	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22501176	22501176	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22869482	22869482	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23274041	23274041	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23675492	23675492	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	24015760	24015760	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	27734046	27734046	+	IGR	SNP	C	T	T	rs74185731		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	27738923	27738923	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	27740191	27740191	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	28503000	28503000	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	28568690	28568690	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	28689352	28689352	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	28698973	28698973	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29581672	29581672	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29606887	29606887	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29645059	29645059	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	30528234	30528234	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	30609031	30609032	+	IGR	DEL	CT	-	-	rs34199393		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	30732486	30732486	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31186501	31186501	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31187117	31187117	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31223735	31223735	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31223748	31223748	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31301801	31301801	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31370351	31370352	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31451821	31451821	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31494533	31494534	+	IGR	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31494550	31494550	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31506864	31506864	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31548833	31548833	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31564379	31564379	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31566877	31566877	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31609122	31609122	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31672338	31672338	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31702409	31702409	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31708587	31708587	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31714707	31714707	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31716227	31716227	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31716234	31716234	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31959984	31959984	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32159109	32159109	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32166686	32166686	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32172847	32172847	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32381965	32381965	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32400613	32400613	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32584461	32584461	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32628239	32628239	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32628499	32628499	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32668613	32668614	+	IGR	INS	-	GAAA	GAAA	rs78373305	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	33851423	33851423	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35004349	35004349	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35024321	35024321	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35873891	35873891	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43724794	43724794	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43788241	43788241	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43807510	43807510	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43808539	43808539	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43835876	43835887	+	IGR	DEL	ACACACACAGAG	-	-	rs71685477	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44289124	44289124	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	45267385	45267386	+	IGR	INS	-	AGGA	AGGA	rs139764203	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	46722898	46722898	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	52013785	52013785	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	52047826	52047826	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	52154544	52154544	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53025427	53025427	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53294795	53294795	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55183554	55183554	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55209126	55209126	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55209199	55209199	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	57508288	57508288	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	90950	90950	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101267271	101267271	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101661087	101661087	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102093141	102093141	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102252413	102252413	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102252704	102252704	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102840478	102840478	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102897857	102897857	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104615615	104615615	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104615948	104615948	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	105206795	105206795	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	105922771	105922771	+	IGR	DEL	A	-	-	rs34055757		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	107112214	107112214	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	107163203	107163203	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	107279354	107279354	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	107420500	107420500	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	107473333	107473333	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	107492873	107492873	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	107572333	107572333	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	108077648	108077648	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111866426	111866426	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	112787410	112787410	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	112933664	112933664	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	113340766	113340766	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	113756711	113756711	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	116400147	116400147	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	116735547	116735547	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	117260074	117260074	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	117271372	117271372	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	117282706	117282706	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	117283549	117283549	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	117783860	117783860	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	118819397	118819397	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	11938383	11938384	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120325654	120325654	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120427174	120427174	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121244950	121244950	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12900901	12900902	+	IGR	DNP	CC	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12987512	12987512	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142541542	142541542	+	IGR	SNP	G	A	A	rs145711434	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142601627	142601627	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142605255	142605255	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	14326015	14326015	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143422081	143422081	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143500668	143500668	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143535278	143535278	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143540365	143540365	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146475408	146475408	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146475772	146475772	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146586767	146586767	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148865531	148865531	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903568	148903568	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149261865	149261865	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	150853822	150853822	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152142700	152142700	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152433140	152433140	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152451782	152451782	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152516960	152516960	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152617030	152617030	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153443270	153443270	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153444669	153444669	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153447030	153447030	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153463635	153463635	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153566604	153566604	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157075220	157075220	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157075455	157075455	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157075880	157075880	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157151413	157151413	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157452710	157452710	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157860616	157860616	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157932117	157932117	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158493838	158493838	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158495438	158495438	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158750657	158750657	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158848728	158848728	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159051513	159051513	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159461109	159461109	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159568895	159568895	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	161190902	161190902	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16119645	16119645	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16321452	16321453	+	IGR	DNP	GG	CT	CT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163271276	163271277	+	IGR	DNP	CC	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163559866	163559867	+	IGR	DNP	CC	AT	AT	rs72360475		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163823126	163823126	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163986013	163986013	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164247028	164247028	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164253514	164253514	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164326812	164326812	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165438084	165438084	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165591423	165591424	+	IGR	INS	-	A	A	rs147754163		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165992097	165992097	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166245477	166245477	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166276884	166276884	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166462360	166462360	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166641153	166641153	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166680311	166680311	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	167132068	167132068	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168930398	168930398	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	169034803	169034803	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16944525	16944525	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	17002498	17002498	+	IGR	SNP	G	C	C	rs150310104	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170761792	170761792	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170775618	170775618	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	171650248	171650248	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175195059	175195059	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175743300	175743300	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175750790	175750790	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177710040	177710040	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177769872	177769872	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177780675	177780675	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177808988	177808988	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	180541853	180541853	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	181104458	181104458	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	181353319	181353319	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	181364072	181364073	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	18343329	18343329	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	18347853	18347853	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	184325714	184325717	+	IGR	DEL	AGGA	-	-	rs35587599		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187065003	187065003	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187749391	187749391	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	188877320	188877320	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	188877355	188877355	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189959784	189959784	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189960454	189960454	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	190032788	190032788	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	190689434	190689434	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191643751	191643751	+	IGR	DEL	G	-	-	rs36050501		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191742882	191742882	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191904218	191904218	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216287	192216287	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192281453	192281453	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192281500	192281506	+	IGR	DEL	TTGTTTT	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192394034	192394034	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192503125	192503125	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192576289	192576289	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192955473	192955474	+	IGR	INS	-	GT	GT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193332241	193332241	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193388847	193388847	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193469264	193469264	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193558534	193558534	+	IGR	SNP	G	T	T	rs141139036	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193602502	193602502	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194158189	194158189	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194270218	194270218	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	196893149	196893149	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	198293107	198293108	+	IGR	DEL	TC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	198359889	198359889	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	198742656	198742656	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	198843283	198843283	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199341184	199341184	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199341190	199341190	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199356408	199356408	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199413640	199413640	+	IGR	SNP	G	C	C	rs143367943	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199757097	199757097	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199878392	199878392	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	200832971	200832972	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	201008582	201008583	+	IGR	INS	-	G	G	rs139661502	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	201148453	201148453	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	20152130	20152130	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	203000586	203000586	+	IGR	DEL	C	-	-	rs67932508		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	20300894	20300894	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	203050077	203050077	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	203436984	203436984	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	203441549	203441549	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	203923896	203923896	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	204733365	204733365	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	20587350	20587365	+	IGR	DEL	CGATGCTTTGTTGTGA	-	-	rs72425711		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	207273399	207273414	+	IGR	DEL	ATGTGTGTGTGTGTGT	-	-	rs57088528		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208613266	208613266	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208619640	208619640	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208870435	208870435	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209121678	209121678	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209125191	209125192	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209155052	209155053	+	IGR	INS	-	TTTG	TTTG	rs148129445	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209313355	209313355	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209405758	209405758	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209702506	209702506	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209706835	209706835	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209734367	209734367	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	213634990	213634990	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	215158781	215158781	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	215162112	215162112	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	216651892	216651892	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	21724701	21724701	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219495615	219495615	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219502250	219502250	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219706634	219706634	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219751115	219751115	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219856277	219856277	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	220487460	220487461	+	IGR	DNP	CC	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221236026	221236026	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221281810	221281810	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221498657	221498657	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221696519	221696520	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221699611	221699611	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222245378	222245379	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222426906	222426906	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222604635	222604636	+	IGR	INS	-	A	A	rs144446488	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224038067	224038068	+	IGR	INS	-	GG	GG	rs144537277	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224262251	224262254	+	IGR	DEL	TTCT	-	-	rs71822807		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224762226	224762226	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	225072747	225072747	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	225073251	225073251	+	IGR	SNP	T	A	A	rs113922298	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	226626723	226626723	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	227621689	227621689	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	227621695	227621695	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	228921609	228921609	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	228935241	228935241	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229056326	229056326	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229056340	229056340	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229104832	229104833	+	IGR	INS	-	A	A	rs141620517	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229224772	229224772	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229825631	229825631	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229930048	229930048	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	230013358	230013358	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	230731375	230731375	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	232716692	232716692	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	233903493	233903493	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	233971901	233971901	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	234798163	234798163	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	235525242	235525242	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	236273580	236273580	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	236274506	236274506	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	236274661	236274661	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	237149704	237149704	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238431858	238431858	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238489400	238489400	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238625857	238625857	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	239216913	239216913	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	240176254	240176254	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	24022972	24022972	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	240799907	240799907	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	240871739	240871739	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242220949	242220949	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	244298532	244298532	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	246677238	246677238	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247398683	247398683	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247902363	247902363	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248085299	248085299	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248505359	248505359	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248604830	248604830	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	29833800	29833800	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30309826	30309826	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30382641	30382641	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30657380	30657380	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30787315	30787315	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30994342	30994342	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	31094639	31094639	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	34757180	34757180	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	34757371	34757371	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	34761849	34761849	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	35117894	35117894	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37124960	37124960	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37124992	37124992	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37775729	37775729	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	38578948	38578948	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	38600666	38600666	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	38674041	38674041	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	38721353	38721353	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	39091691	39091691	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	40183906	40183906	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	40446740	40446740	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	41352798	41352798	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	4432500	4432500	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	4460871	4460871	+	IGR	SNP	C	T	T	rs143622386	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	4551014	4551014	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	46898663	46898663	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	48118595	48118595	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	50759033	50759033	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	5172828	5172828	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	5173578	5173578	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	5218314	5218314	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	53878256	53878256	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	55971232	55971232	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	56386417	56386417	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	56425427	56425427	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	56529374	56529374	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	56535217	56535217	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	56587047	56587047	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	5732699	5732699	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	59096454	59096454	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	59622186	59622186	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	60849255	60849255	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	60921056	60921056	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	61320843	61320843	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	63597783	63597783	+	IGR	DEL	A	-	-	rs139616796		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	66152134	66152135	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	67735987	67735987	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	69246897	69246897	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	69423784	69423784	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	69427367	69427367	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	71714300	71714300	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73459019	73459019	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73570509	73570509	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73571714	73571714	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73672646	73672646	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	74000503	74000503	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	74100499	74100499	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	74313813	74313813	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	75390468	75390468	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	76499715	76499715	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	77165504	77165504	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	77278208	77278208	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	78240146	78240146	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79215017	79215017	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79335802	79335802	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80557803	80557803	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80604190	80604190	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80609253	80609253	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80917583	80917583	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	81559770	81559770	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	81564261	81564261	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	82472648	82472648	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	825872	825872	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	83666970	83666970	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	84533176	84533177	+	IGR	INS	-	C	C	rs75740768		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	86666782	86666782	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87236150	87236150	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87237236	87237236	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87642215	87642215	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87696934	87696934	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87756629	87756629	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87780730	87780730	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	88776787	88776787	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	89043658	89043658	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	91064501	91064501	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	92022659	92022659	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	95038355	95038355	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96154729	96154729	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96219964	96219964	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96913258	96913258	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	98662825	98662825	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	98677693	98677693	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	1029756	1029756	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10891749	10891749	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11090330	11090330	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11323582	11323582	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11715315	11715315	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12150117	12150118	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12392911	12392911	+	IGR	SNP	G	C	C	rs138202346	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	17110512	17110512	+	IGR	DEL	T	-	-	rs74177398		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	17993502	17993503	+	IGR	DEL	GC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	21791544	21791544	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	22312713	22312714	+	IGR	DNP	GG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	22426083	22426083	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	22634904	22634905	+	IGR	INS	-	AC	AC	rs147022150	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	22871070	22871070	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23091410	23091410	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23269591	23269591	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23428336	23428336	+	IGR	SNP	G	C	C	rs138749664	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25142270	25142270	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25965983	25965983	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	26074733	26074733	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	26201309	26201309	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29428195	29428195	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29582937	29582937	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29584589	29584589	+	IGR	SNP	C	T	T	rs149671236	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29595677	29595677	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873655	29873655	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	30001504	30001504	+	IGR	DEL	C	-	-	rs10712827		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	31571428	31571428	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36053538	36053538	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36054721	36054721	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36073552	36073552	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36097860	36097860	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36231179	36231179	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36254701	36254701	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37227634	37227634	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37227843	37227843	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37883379	37883379	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37885190	37885190	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37893928	37893928	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37902963	37902963	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38226407	38226407	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38226610	38226610	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38425754	38425754	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38545582	38545583	+	IGR	INS	-	T	T	rs111550828		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38603928	38603928	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38660001	38660001	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38833419	38833419	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	39143908	39143908	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	39482213	39482213	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	39566902	39566902	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	39567456	39567456	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	40468865	40468865	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	40626295	40626295	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	40626709	40626709	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	42426954	42426954	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	42472281	42472281	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	42474069	42474069	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	44225932	44225932	+	IGR	DEL	T	-	-	rs67874241		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	44624529	44624532	+	IGR	DEL	CTTT	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	44728180	44728180	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	45120414	45120414	+	IGR	SNP	G	T	T	rs143504220	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	45423077	45423077	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	46634451	46634451	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	46721072	46721072	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	46722398	46722398	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	47159433	47159433	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	47193209	47193209	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	48573411	48573411	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	49747705	49747705	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	49818813	49818813	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	50927780	50927780	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	51063528	51063528	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	52361451	52361451	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53540520	53540520	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53580980	53580980	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53691140	53691140	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53691286	53691286	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53821102	53821102	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53867819	53867819	+	IGR	SNP	G	T	T	rs148549517	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53967716	53967716	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	54289336	54289336	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	54644391	54644391	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	55366031	55366031	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	55424325	55424325	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	55611172	55611172	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56376594	56376594	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56524081	56524081	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56557678	56557678	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56713544	56713544	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	57713463	57713463	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	58001619	58001619	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	59327527	59327527	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	59335160	59335160	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	59466203	59466203	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	59471019	59471019	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	59496639	59496639	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	59581686	59581686	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	59581863	59581863	+	IGR	SNP	T	C	C	rs113484027	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	59648013	59648013	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	62963084	62963084	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6678582	6678582	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	7500961	7500961	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10428337	10428337	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10617354	10617354	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10619790	10619790	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10705218	10705218	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10707136	10707136	+	IGR	SNP	T	C	C	rs112573790		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10886550	10886550	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10888715	10888715	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10899806	10899806	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11119044	11119044	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11164448	11164448	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11164898	11164898	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11168543	11168543	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11172621	11172621	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14800157	14800157	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14818474	14818477	+	IGR	DEL	AAAC	-	-	rs145322081	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15313188	15313188	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	21489805	21489805	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	23809610	23809610	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	23824106	23824106	+	IGR	SNP	C	T	T	rs150175552	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24762889	24762889	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24781336	24781336	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	25236632	25236632	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	25305296	25305297	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	25595866	25595866	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	26734665	26734665	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	26807363	26807363	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	27798611	27798611	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28515663	28515663	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	30024634	30024634	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31803078	31803078	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31874111	31874111	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32057814	32057814	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32433470	32433470	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	40491140	40491140	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9594350	9594351	+	IGR	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9655453	9655456	+	IGR	DEL	ATAG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16054798	16054798	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16057678	16057678	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123700	16123700	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16298026	16298026	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349326	16349326	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16389583	16389583	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16399912	16399912	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16405006	16405006	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16425766	16425766	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16435262	16435262	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16651925	16651925	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16918987	16918987	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16940799	16940799	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17336544	17336544	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17359807	17359807	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	23265141	23265141	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	23328397	23328397	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	23712598	23712598	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	25939150	25939150	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27202757	27202757	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27385204	27385204	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	28212686	28212686	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	32562068	32562068	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	32675338	32675338	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	35229471	35229471	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	39552038	39552038	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	47643652	47643652	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	47728711	47728711	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	48566123	48566123	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	48790815	48790815	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	50152106	50152106	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	100986938	100986938	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	101315471	101315471	+	IGR	DEL	C	-	-	rs116450454	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	102675841	102675842	+	IGR	DEL	AA	-	-	rs3047353		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103806370	103806370	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104073161	104073161	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104111500	104111500	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104209114	104209114	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104410419	104410419	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105388330	105388330	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105388568	105388568	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107123550	107123550	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107313750	107313750	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107315057	107315057	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107579955	107579955	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107780016	107780016	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107899893	107899893	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108881822	108881822	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	110490283	110490283	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	112502929	112502929	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	113611555	113611555	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	113849584	113849584	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	114076314	114076314	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	114178143	114178143	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	116742777	116742777	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	116948325	116948325	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	116950588	116950588	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117635957	117635957	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117657405	117657405	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118148874	118148874	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118238916	118238916	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118293608	118293608	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118351785	118351785	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118419195	118419195	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118431524	118431524	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118432026	118432026	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119085132	119085132	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119173738	119173738	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119192767	119192767	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119457552	119457552	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119482115	119482115	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	121080887	121080887	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	121123818	121123818	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	122599257	122599257	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	122931453	122931453	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	123146190	123146190	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	123162240	123162241	+	IGR	DNP	CA	AC	AC			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	125933486	125933486	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	125999583	125999583	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	126124766	126124766	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127281701	127281701	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127330696	127330696	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127399762	127399762	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127490818	127490818	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127492317	127492317	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127553381	127553381	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127637074	127637074	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	128005908	128005908	+	IGR	SNP	C	A	A	rs112028260		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	129604989	129604989	+	IGR	DEL	G	-	-	rs141953282	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	129638160	129638160	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	129747438	129747438	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	129772223	129772223	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	129772871	129772872	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	129814988	129814989	+	IGR	DEL	TA	-	-	rs144838130		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	129923310	129923310	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130071741	130071741	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130386911	130386911	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130386988	130386988	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130387856	130387856	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130589572	130589572	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130589584	130589584	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130748026	130748026	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130987417	130987417	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132115494	132115494	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132145054	132145054	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132145419	132145419	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132349794	132349794	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132357693	132357693	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132359037	132359037	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132364941	132364942	+	IGR	INS	-	G	G	rs145918909	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132367181	132367181	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132383821	132383821	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132383898	132383898	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132775512	132775512	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132861027	132861027	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132861829	132861829	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133020363	133020363	+	IGR	SNP	G	T	T	rs62165969		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133034656	133034656	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133039858	133039858	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133046357	133046357	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133047958	133047958	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133049088	133049088	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133049310	133049310	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133049440	133049440	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133050875	133050875	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133052983	133052983	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133108679	133108680	+	IGR	INS	-	T	T	rs148092077	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133121422	133121422	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133121433	133121433	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	134493934	134493934	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13555105	13555105	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13568116	13568116	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	136954945	136954945	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	137278044	137278044	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139412659	139412659	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140134871	140134872	+	IGR	INS	-	CT	CT	rs139350630	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140426617	140426617	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140717775	140717775	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	142938960	142938960	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	142953991	142953991	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	143105665	143105665	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	143252432	143252432	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	143252585	143252585	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146195501	146195501	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146489280	146489280	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146584879	146584879	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146843121	146843121	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146843124	146843124	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	148009032	148009032	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	148081635	148081635	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	148166927	148166927	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	148518774	148518774	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14886961	14886961	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	149284225	149284225	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	150177453	150177453	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	15023942	15023942	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	150374816	150374816	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	15176056	15176056	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	152163988	152163988	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154382842	154382843	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154410601	154410601	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154522717	154522717	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	155346406	155346406	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	155445901	155445901	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	155724285	155724285	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	157926799	157926799	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	15925418	15925418	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	161905541	161905541	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162138440	162138440	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162360711	162360711	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162361108	162361108	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162363165	162363165	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162363246	162363246	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162436734	162436734	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	164009847	164009847	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	164237297	164237297	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	164650312	164650313	+	IGR	DEL	GG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	16570553	16570553	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	166275146	166275146	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	167543145	167543145	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168241090	168241090	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168241122	168241122	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168570437	168570437	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168572533	168572533	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	16905955	16905955	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	172480601	172480601	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	172618331	172618331	+	IGR	DEL	G	-	-	rs80178609		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17289671	17289671	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17306928	17306928	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17465806	17465806	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	174728891	174728891	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17508584	17508584	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	175895387	175895387	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	176189849	176189850	+	IGR	DNP	GA	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	176440829	176440829	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	176475912	176475912	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177107600	177107600	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177392083	177392083	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177491583	177491583	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177643776	177643778	+	IGR	DEL	AGA	-	-	rs76252427		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177703420	177703420	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177831076	177831076	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	180265219	180265219	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	18033956	18033956	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181803736	181803736	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	182282554	182282554	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	182662428	182662428	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186289795	186289795	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186874209	186874209	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	188091860	188091860	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	188865165	188865165	+	IGR	DEL	G	-	-	rs62182907		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	189889391	189889391	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	191677663	191677663	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	192428874	192428874	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	193689757	193689758	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	193782809	193782809	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194141497	194141497	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194141990	194141990	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194217767	194217767	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194935830	194935830	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	196941252	196941252	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	19723399	19723399	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	199787578	199787578	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	19983230	19983230	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	199889039	199889039	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	199903812	199903812	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	201074393	201074393	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	204637968	204637968	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	207101211	207101211	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	207284027	207284027	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	20729670	20729670	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	208196318	208196319	+	IGR	INS	-	A	A	rs141420191	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	208973173	208973173	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	209752789	209752789	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	209765050	209765050	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	209765144	209765144	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	209938496	209938496	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	211577275	211577275	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	211645099	211645099	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	211671875	211671875	+	IGR	SNP	G	T	T	rs148420429	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	212033199	212033199	+	IGR	DEL	A	-	-	rs79384944		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	212125647	212125647	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21219489	21219489	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	215523442	215523442	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21585096	21585096	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21630057	21630057	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21632429	21632429	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217536596	217536596	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217630220	217630220	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217669562	217669562	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217690287	217690287	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217833722	217833722	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217898273	217898274	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217899777	217899777	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217904292	217904292	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217934123	217934123	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	218148404	218148404	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21887472	21887472	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	219045354	219045354	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21980764	21980764	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	220549385	220549385	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	220740865	220740865	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	220949499	220949499	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	220949590	220949590	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	221278283	221278283	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	221352909	221352909	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	221905720	221905720	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	222928209	222928209	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	223049412	223049412	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	223170375	223170375	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	223606985	223606985	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	225021687	225021687	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	225036014	225036014	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	225565878	225565878	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	226144668	226144668	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	226145226	226145226	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	226863690	226863690	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	22729720	22729720	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	227377137	227377137	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	228654198	228654200	+	IGR	DEL	TCC	-	-	rs111600801		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	229656500	229656500	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	229717688	229717688	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	229723554	229723554	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	229868753	229868753	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	231438719	231438719	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	232298813	232298813	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	23262969	23262969	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	233306705	233306705	+	IGR	SNP	G	T	T	rs147104068	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	23421819	23421819	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	235732717	235732717	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	236056648	236056648	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	237610243	237610243	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	237963069	237963069	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	237964056	237964056	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	238214429	238214429	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	238227224	238227225	+	IGR	DEL	AT	-	-	rs71962517		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	238330486	238330486	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	239667205	239667205	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	23968258	23968258	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	239722186	239722186	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	2466360	2466360	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	2575643	2575643	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	26121744	26121744	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	2854402	2854402	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	30307942	30307942	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	30581352	30581352	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	32048233	32048233	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	32048242	32048242	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	33862334	33862334	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34065638	34065638	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34232882	34232884	+	IGR	DEL	TCT	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	36036440	36036440	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	36153404	36153404	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	36425462	36425462	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	37614200	37614200	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	3795380	3795380	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	38045122	38045122	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	38459231	38459231	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	40919412	40919412	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	41277333	41277333	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4135798	4135798	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	41486145	41486145	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4153499	4153499	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	41995499	41995499	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	41996776	41996776	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	42207750	42207750	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	45578184	45578184	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4616889	4616889	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	48479997	48479997	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49007784	49007784	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49488339	49488339	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49519197	49519197	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	51329732	51329732	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52797916	52797916	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52798980	52798980	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	53076288	53076288	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	53079999	53079999	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	53502242	53502242	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	53697799	53697799	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	54902888	54902888	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	54903985	54903985	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	55379746	55379747	+	IGR	INS	-	AC	AC	rs140188632	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	56977957	56977957	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	57089117	57089117	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	57146945	57146945	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	57761817	57761817	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	57992422	57992422	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58479391	58479391	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	59605722	59605722	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	59687486	59687486	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	59753281	59753281	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	59851897	59851897	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	59972231	59972231	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	60576077	60576077	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	61938029	61938029	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	62418153	62418153	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	64630550	64630550	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	67048541	67048541	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6729178	6729178	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	67814272	67814272	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	68251385	68251385	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	68251413	68251413	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	71915705	71915705	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72044058	72044058	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72149966	72149966	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72178114	72178114	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	73981201	73981201	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	75149644	75149644	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	76334183	76334183	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	76564314	76564314	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	76806288	76806288	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	7698401	7698401	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	7747501	7747501	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78127531	78127531	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78820239	78820239	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	79279467	79279467	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81107504	81107504	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81107525	81107525	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81313349	81313349	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81422421	81422421	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81423510	81423510	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81423724	81423724	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81426309	81426309	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81427935	81427935	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83030440	83030440	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83388801	83388801	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83617793	83617793	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83617798	83617798	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	84105124	84105124	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	84315177	84315177	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	8762590	8762590	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89148000	89148000	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91790794	91790794	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91793999	91793999	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800355	91800355	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800771	91800771	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91854365	91854365	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91872736	91872736	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91924967	91924967	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91924969	91924969	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91927245	91927245	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91927459	91927459	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91935964	91935964	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91936437	91936437	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92091409	92091409	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92102154	92102154	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92151654	92151654	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95630313	95630313	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95660055	95660055	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96241428	96241428	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96363804	96363804	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96368739	96368739	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96465775	96465775	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	98253384	98253384	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	100319626	100319626	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	101753032	101753032	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	102691481	102691481	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	102704153	102704153	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	103782462	103782462	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	104448050	104448053	+	IGR	DEL	TACA	-	-	rs147663614	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	110401226	110401226	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	111247077	111247077	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	112416325	112416325	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	112866436	112866436	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	113822282	113822282	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	113971749	113971749	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	115063941	115063941	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	115159243	115159243	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116306291	116306291	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116312609	116312609	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116365385	116365385	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116571556	116571556	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116597491	116597491	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116745680	116745680	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116746248	116746248	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117453425	117453425	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117477018	117477019	+	IGR	DNP	CC	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117506962	117506962	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117506965	117506965	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117579158	117579158	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117945839	117945839	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117998789	117998789	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	118780	118780	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	120525182	120525182	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	120541350	120541350	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	121666812	121666812	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	126873398	126873398	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	127127078	127127078	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	127195949	127195949	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	12828936	12828936	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	129700258	129700258	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	133767258	133767258	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	133863922	133863922	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	133889839	133889839	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	133946941	133946941	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	136882417	136882417	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137313238	137313238	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137599590	137599590	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	13858287	13858287	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	138768195	138768195	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	138800649	138800649	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	138850431	138850432	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	138855823	138855823	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	139013924	139013924	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	140923907	140923907	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	140925479	140925479	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	142906379	142906379	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	143951840	143951840	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	144249823	144249823	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	144640103	144640103	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	144829438	144829438	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	144829465	144829465	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	145116119	145116119	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	145542119	145542119	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146064727	146064727	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146537037	146537038	+	IGR	INS	-	TT	TT	rs149077808	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146593832	146593832	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146662751	146662751	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146767952	146767952	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146988490	146988490	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146995069	146995069	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	147315456	147315456	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	147884648	147884648	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148132281	148132281	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	149784494	149784494	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	149858567	149858568	+	IGR	DNP	CT	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	151525047	151525047	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	15183190	15183190	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	152315911	152315911	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	152316186	152316186	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	152695416	152695416	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	154375132	154375132	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	157629223	157629223	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	157635242	157635242	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161043871	161043871	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161147042	161147042	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161224430	161224430	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161371397	161371397	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161430708	161430708	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161876363	161876363	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	1619658	1619659	+	IGR	DEL	TG	-	-	rs5846127		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163592402	163592402	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163625654	163625654	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163625838	163625838	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163719942	163719942	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163743870	163743870	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163935718	163935718	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	1650830	1650830	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	165108214	165108214	+	IGR	SNP	G	A	A	rs75307908	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	165577766	165577769	+	IGR	DEL	ACAC	-	-	rs149168325		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166011623	166011623	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166228249	166228249	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166776762	166776762	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	16746105	16746105	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	169621961	169621961	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	171279066	171279066	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	171289464	171289464	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	172993632	172993632	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	176051074	176051074	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	176258296	176258296	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	176509111	176509134	+	IGR	DEL	GAAGGAAGGAAGGAAGGAAGGAAA	-	-	rs58783869		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	177973384	177973384	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	17913333	17913333	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	17969031	17969031	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	179899570	179899570	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	179902337	179902337	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180041047	180041047	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180605615	180605615	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	181223311	181223311	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	183834487	183834487	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	184332057	184332057	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	18581276	18581276	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186103793	186103793	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186232523	186232523	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186232598	186232598	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186406042	186406042	+	IGR	SNP	G	T	T	rs115346187	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186479273	186479273	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	187504424	187504424	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	187515247	187515247	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	187595922	187595922	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	18879829	18879829	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	18923022	18923022	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	189235384	189235384	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	189316109	189316110	+	IGR	DNP	GG	CT	CT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	189885043	189885043	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	190096245	190096245	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	190096390	190096390	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	190728707	190728707	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	190768304	190768304	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	191762617	191762617	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192710517	192710517	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192842879	192842879	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192874221	192874221	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192874456	192874456	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	193109688	193109688	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	194457887	194457887	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	194477357	194477357	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195420143	195420143	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	197069612	197069612	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	197095896	197095896	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	197393844	197393844	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	197838527	197838527	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	20390345	20390345	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	20390347	20390347	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	21295384	21295384	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	23200798	23200798	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26040739	26040739	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26206687	26206687	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26208236	26208236	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26382910	26382910	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26851192	26851192	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	27046602	27046602	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	27047429	27047429	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	27997046	27997046	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31273890	31273890	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31490222	31490222	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	3317285	3317285	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	33930357	33930357	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34117901	34117901	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34349476	34349476	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34453910	34453910	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34645379	34645379	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34773016	34773016	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34978606	34978606	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	35209847	35209847	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	35257800	35257800	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36125846	36125846	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36308641	36308641	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	39631371	39631371	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	40676646	40676646	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	43789220	43789220	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	43854263	43854263	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	44118157	44118157	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	44124625	44124625	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	44566323	44566324	+	IGR	DEL	GT	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	5885124	5885124	+	IGR	DEL	T	-	-	rs34325639		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	5933273	5933273	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	6022562	6022562	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	61263016	61263016	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	61334635	61334635	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	61334691	61334691	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	6191207	6191207	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	68683100	68683100	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	68685597	68685597	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	70815722	70815722	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	72260096	72260096	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	72263745	72263745	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75397021	75397021	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75397814	75397814	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75420160	75420160	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76584596	76584596	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76586652	76586652	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	7843539	7843539	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	79912423	79912423	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80213808	80213809	+	IGR	DNP	TT	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80265562	80265562	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80436837	80436837	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80471807	80471807	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80708428	80708428	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	81408102	81408102	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	81519533	81519533	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	8154789	8154789	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82708970	82708970	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	83204823	83204823	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	83410710	83410710	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	86525334	86525334	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	86554642	86554643	+	IGR	DEL	CT	-	-	rs139023740		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	86578984	86578984	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87068221	87068221	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87694348	87694348	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88504140	88504140	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	8853954	8853954	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	8855269	8855269	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88998638	88998638	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	89758420	89758420	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	93924025	93924025	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96386773	96386773	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96387597	96387597	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96472749	96472749	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96473294	96473294	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96473383	96473383	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97806971	97806971	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97895651	97895651	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97916253	97916253	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97926730	97926730	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	104895603	104895603	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109294013	109294013	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111321000	111321000	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111698702	111698702	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111906763	111906763	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112505450	112505450	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11550286	11550286	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116842650	116842650	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	119414574	119414574	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	12432065	12432065	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	125342715	125342715	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	128335772	128335772	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	130059692	130059692	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	131477831	131477832	+	IGR	DEL	AT	-	-	rs137896796		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13150036	13150036	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	132272283	132272283	+	IGR	SNP	G	T	T	rs74423549		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134610862	134610862	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135328074	135328074	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135755039	135755039	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135967877	135967877	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	136292762	136292762	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	136679727	136679727	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137276419	137276419	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137277204	137277204	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137690778	137690778	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	138369356	138369356	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139245197	139245198	+	IGR	DEL	TG	-	-	rs35089297		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139468073	139468074	+	IGR	INS	-	A	A	rs140685305	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139759215	139759215	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	142494999	142494999	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14261390	14261390	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14451770	14451770	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	150808056	150808056	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	153034380	153034380	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	153138331	153138331	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	157543691	157543691	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	158743782	158743782	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	161563055	161563055	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	164137461	164137461	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165331875	165331875	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165436940	165436940	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165577479	165577479	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165864670	165864670	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	166519183	166519183	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	168678296	168678297	+	IGR	DNP	CA	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	168991605	168991605	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	170706532	170706532	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17125645	17125645	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	172305982	172305982	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17335946	17335946	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17408053	17408053	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17408055	17408055	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	174438210	174438210	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	174691978	174691978	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	174810946	174810946	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	175009855	175009855	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17554143	17554143	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	177422793	177422793	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	180107017	180107017	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	180324910	180324910	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	181076916	181076916	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182348763	182348763	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182464532	182464532	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18247627	18247627	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18247694	18247694	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182780055	182780055	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18499480	18499481	+	IGR	DEL	AC	-	-	rs138092142		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	185220763	185220763	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	188597046	188597046	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	188769698	188769698	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189587294	189587295	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189745577	189745577	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190202808	190202808	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190205077	190205077	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190368471	190368471	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190394153	190394153	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190506760	190506760	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190518433	190518433	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190524889	190524889	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190570538	190570538	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190570969	190570969	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190574660	190574660	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190584327	190584327	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190589762	190589762	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190622283	190622283	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190626703	190626703	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190632358	190632358	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190632830	190632830	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190638788	190638788	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190641477	190641477	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190642102	190642102	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190642646	190642646	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190643224	190643224	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190653046	190653046	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190655198	190655198	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190656338	190656338	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190673014	190673014	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190891850	190891850	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190898312	190898312	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190898371	190898371	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	191028206	191028206	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	191034395	191034395	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	20197939	20197939	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	24009354	24009354	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	24325958	24325958	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27587129	27587129	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28541117	28541117	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28825680	28825680	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	29750868	29750868	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	30219723	30219723	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	31961784	31961784	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	34246296	34246296	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	34267864	34267864	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	34267870	34267870	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	34624301	34624301	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	35362560	35362560	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3603368	3603368	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36347828	36347828	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36348366	36348366	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36349566	36349566	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36442791	36442791	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3650140	3650140	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3650181	3650181	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36791	36791	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36824873	36824873	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	38214	38214	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	38363387	38363389	+	IGR	DEL	AAG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4176177	4176177	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43373517	43373517	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43588826	43588826	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43589219	43589219	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45107125	45107125	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45691304	45691304	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46212459	46212459	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46570285	46570285	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	47020056	47020056	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49099749	49099753	+	IGR	DEL	TCCGG	-	-	rs60947727		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49183039	49183039	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49213584	49213585	+	IGR	INS	-	A	A	rs141768505		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49215723	49215723	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49262724	49262724	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49581117	49581117	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	53119261	53119261	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	53205623	53205624	+	IGR	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	53419240	53419240	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	55392155	55392155	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	55622883	55622883	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	55724871	55724871	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	56013306	56013309	+	IGR	DEL	GATG	-	-	rs113371959		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	56939951	56939952	+	IGR	INS	-	TG	TG	rs145293569	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	57459789	57459789	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	58223530	58223530	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	58275235	58275235	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	58411611	58411611	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	59057618	59057618	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	59148481	59148481	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	60126868	60126868	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	61817519	61817519	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	61929473	61929473	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	61936483	61936483	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63376515	63376515	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63828549	63828549	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65319074	65319074	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	66959919	66959919	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69091109	69091109	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69652491	69652491	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70265412	70265412	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70284959	70284959	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70288642	70288642	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70440314	70440314	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	73792076	73792076	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	73838533	73838533	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	74804955	74804955	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	83050511	83050511	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	84429595	84429595	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	88331963	88331963	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9384935	9384935	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9405435	9405435	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97138352	97138352	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97192318	97192318	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9756500	9756500	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	100820005	100820005	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	101222401	101222401	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	104371516	104371516	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105878910	105878910	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105878986	105878986	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	106085754	106085754	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107061733	107061733	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107082675	107082675	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	108928354	108928354	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	10938934	10938934	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110319449	110319449	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	113215604	113215604	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	114291310	114291310	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	114727341	114727341	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	116248806	116248806	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117245934	117245934	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117454333	117454333	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117517851	117517851	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117676082	117676082	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	119084404	119084404	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	119147061	119147061	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	119562238	119562238	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	119562781	119562781	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	120911954	120911954	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	120952417	120952417	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	121557427	121557427	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12247872	12247872	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	122558767	122558767	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	123161532	123161532	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	123297932	123297937	+	IGR	DEL	TGTGTG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	124467566	124467566	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	124693411	124693411	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12486569	12486569	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	124978578	124978578	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	125300104	125300104	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126434324	126434324	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	128059570	128059570	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	128127219	128127219	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	129210778	129210778	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12935208	12935208	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12992817	12992817	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130132170	130132170	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130330857	130330857	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	13447233	13447233	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	13479299	13479299	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	135451987	135451987	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	136193905	136193905	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	136898567	136898567	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	141568184	141568184	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	143019199	143019199	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144367061	144367061	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144609549	144609549	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	145289004	145289004	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	145291202	145291202	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	145807905	145807906	+	IGR	INS	-	CTC	CTC	rs150066382	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	147600866	147600866	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	147639055	147639055	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152594069	152594069	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152749617	152749617	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15490027	15490027	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	157413489	157413489	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	157513791	157513791	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	159264908	159264908	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	159327072	159327072	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16234497	16234497	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	163145312	163145312	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	163364726	163364726	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	163535042	163535042	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165456188	165456188	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	168981831	168981831	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	169754843	169754843	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	169775821	169775822	+	IGR	DNP	GG	TA	TA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	172875824	172875824	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173743499	173743499	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174814287	174814287	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	1780478	1780478	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180184102	180184102	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180542132	180542132	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180553782	180553783	+	IGR	DEL	AC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	18106596	18106596	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	18129372	18129372	+	IGR	DEL	T	-	-	rs78547581		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	19311167	19311167	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20144925	20144925	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20275361	20275361	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20304317	20304318	+	IGR	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20305058	20305058	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20305197	20305197	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2032635	2032636	+	IGR	DNP	CC	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20328918	20328918	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20468520	20468520	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	22973229	22973229	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23029378	23029378	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24786970	24786970	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2528309	2528309	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2539543	2539543	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25411866	25411866	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2547204	2547204	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25722279	25722279	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	26071814	26071815	+	IGR	DEL	TG	-	-	rs71603245		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	26400040	26400040	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2686014	2686014	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	27617819	27617819	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	27742710	27742710	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	28823328	28823328	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	28951239	28951239	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29002201	29002201	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2913102	2913102	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29387494	29387494	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29881934	29881934	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29976254	29976254	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30612395	30612395	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33243054	33243054	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33303451	33303451	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34495804	34495809	+	IGR	DEL	CGTGTG	-	-	rs58518964		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	3695425	3695425	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	37907482	37907482	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	37907642	37907642	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	37958985	37958985	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	38720123	38720123	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	3958541	3958541	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39885289	39885289	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40063455	40063455	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40067117	40067117	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40339812	40339812	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40355445	40355445	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41669572	41669572	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	42087891	42087891	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	4290935	4290935	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	42939844	42939844	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	4350155	4350155	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	49575227	49575227	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	50740933	50740933	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	50790930	50790930	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	50897489	50897489	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	51981986	51981986	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	52814041	52814042	+	IGR	INS	-	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	53155249	53155249	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5350991	5350991	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5378549	5378549	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	54041793	54041793	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	54153803	54153803	+	IGR	DEL	C	-	-	rs10040872	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	54258645	54258646	+	IGR	DEL	TA	-	-	rs35693314		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5508043	5508043	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5515699	5515699	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56816387	56816387	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	57540657	57540657	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	57541032	57541032	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	61096421	61096421	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	65628935	65628935	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	65725282	65725282	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	66891317	66891317	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	66895846	66895846	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	6878205	6878205	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7037200	7037200	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7064748	7064748	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7114313	7114313	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	71859855	71859856	+	IGR	DNP	CA	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	71896310	71896310	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7299911	7299911	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	74225783	74225783	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75045834	75045834	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75212258	75212258	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75216630	75216630	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75248365	75248365	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	77080614	77080614	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	78056189	78056189	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7927610	7927610	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	81203482	81203482	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	81621207	81621207	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8166157	8166157	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	81961252	81961252	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	82040883	82040883	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8209410	8209410	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8286422	8286422	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84295866	84295866	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84295868	84295868	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84295890	84295890	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8464537	8464537	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84760669	84760669	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	85703869	85703869	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8581050	8581050	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8615004	8615004	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8615373	8615373	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	86180751	86180751	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8780288	8780288	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	88549517	88549517	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	88957098	88957098	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	89556671	89556671	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	89568095	89568095	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8978459	8978459	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	9010637	9010637	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	91339006	91339006	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92291399	92291399	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	94657484	94657484	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97406092	97406092	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97417149	97417149	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97728037	97728037	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97857299	97857299	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97912241	97912241	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	98534479	98534479	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	98868440	98868440	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99283998	99283998	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99285110	99285110	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100319649	100319649	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100498637	100498637	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100498671	100498671	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	103421887	103421887	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104027364	104027364	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104030051	104030051	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104281951	104281952	+	IGR	DNP	GA	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104465681	104465681	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104465963	104465963	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104467177	104467177	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104750102	104750102	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104750122	104750122	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104774814	104774814	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104871587	104871587	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104871993	104871993	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104872267	104872267	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106017601	106017601	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106115289	106115289	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106115487	106115487	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106871567	106871567	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	109106839	109106839	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	110376211	110376211	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	111378028	111378028	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112594622	112594623	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112683598	112683598	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112923865	112923865	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113544004	113544004	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113544741	113544741	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	114172617	114172617	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	114819614	114819614	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	115619391	115619391	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	120092214	120092214	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	121956164	121956164	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	122005185	122005185	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	122178796	122178796	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	12345135	12345135	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	124106804	124106804	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	125945189	125945189	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	126579342	126579342	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	127683614	127683614	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	127980935	127980935	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	128879533	128879533	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	129096789	129096789	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	131614672	131614672	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	132102046	132102046	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	137443052	137443053	+	IGR	INS	-	AC	AC	rs148230833	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	139383236	139383251	+	IGR	DEL	AAGGGAGAAAGGAAGC	-	-	rs12665587		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	139388433	139388433	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	139659628	139659628	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	140585037	140585037	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	140585058	140585058	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	141291711	141291711	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	142367135	142367135	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	142376824	142376824	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	145413817	145413817	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	14666560	14666560	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	146780031	146780031	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	147741819	147741819	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	1488923	1488923	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150298895	150298895	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150299559	150299559	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150354099	150354099	+	IGR	SNP	C	A	A	rs148392164	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150777215	150777215	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150778394	150778394	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150841740	150841740	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	155692425	155692425	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	155892361	155892361	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	155949032	155949032	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	155989980	155989980	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	156087626	156087626	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	156330260	156330260	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	156915078	156915078	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	158135149	158135150	+	IGR	INS	-	C	C	rs72560698		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	159511118	159511118	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160315302	160315302	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160366667	160366667	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	164200658	164200658	+	IGR	SNP	C	T	T	rs145176285	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	164209460	164209460	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	164444505	164444505	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	164483006	164483006	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	164544810	164544810	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	164544822	164544822	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	165521302	165521302	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	165566530	165566530	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	165584466	165584466	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	165687593	165687593	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	165689375	165689375	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	167657909	167657909	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	16978454	16978454	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	170403557	170403557	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	18772670	18772670	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	19349225	19349225	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	19612888	19612888	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	21369564	21369565	+	IGR	DNP	TG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	22520743	22520743	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	23649303	23649303	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	23702950	23702950	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	23973098	23973098	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27276791	27276791	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27375781	27375781	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27705972	27705972	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27748647	27748647	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28164699	28164699	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28287696	28287696	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28414757	28414757	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29218166	29218166	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29517573	29517573	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	30314743	30314743	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	30664740	30664740	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	33890689	33890689	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	358368	358368	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	36641906	36641906	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39263842	39263842	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	40124220	40124220	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	40311879	40311879	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	40603261	40603261	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	43836967	43836967	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	44075699	44075700	+	IGR	DEL	AG	-	-	rs72347823		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	44603699	44603699	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	4476588	4476588	+	IGR	SNP	T	C	C	rs147671446	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	45792365	45792365	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	45829154	45829154	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	45860980	45860980	+	IGR	DEL	G	-	-	rs66513138		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	45865152	45865152	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	46173358	46173358	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	46173613	46173613	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	46514884	46514885	+	IGR	INS	-	AC	AC	rs147373343	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48116539	48116539	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48289277	48289277	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48863825	48863825	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48962469	48962469	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49028630	49028630	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49175000	49175000	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49295835	49295835	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50239615	50239615	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50240518	50240518	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	51980347	51980347	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	52677244	52677244	+	IGR	SNP	G	C	C	rs67221014		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	53064062	53064062	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	56271592	56271592	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57519688	57519688	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57540625	57540625	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57566674	57566674	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57570240	57570240	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57575853	57575853	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57841144	57841145	+	IGR	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57970042	57970042	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57970236	57970236	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57975396	57975396	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57975666	57975666	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57976077	57976077	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57979288	57979288	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57979559	57979559	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57998234	57998234	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58167874	58167874	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58446906	58446906	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58579274	58579274	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58583919	58583919	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58588261	58588262	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	6033015	6033015	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	62231279	62231279	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63251008	63251008	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63502450	63502450	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63567025	63567025	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63569399	63569399	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63573313	63573313	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63648259	63648259	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63902952	63902952	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63937480	63937480	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63939097	63939097	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66563427	66563427	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66683598	66683598	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66804274	66804274	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66804576	66804576	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	67293184	67293185	+	IGR	DEL	AG	-	-	rs60051488		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	6771559	6771559	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	6771602	6771602	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	6781511	6781511	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	71318923	71318923	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72139825	72139825	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72401889	72401889	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72401891	72401891	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72513004	72513004	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	75525100	75525100	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	75560213	75560213	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	763463	763463	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	77380229	77380229	+	IGR	DEL	T	-	-	rs142483194		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	77391761	77391761	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	77494918	77494918	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	77961759	77961759	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78255821	78255822	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	79567935	79567935	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	81442508	81442508	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	81580795	81580795	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	81688266	81688266	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	82680601	82680601	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	83399475	83399475	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	8368144	8368144	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	84986109	84986109	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85140642	85140642	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85727168	85727168	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85735838	85735838	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85738555	85738555	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85875488	85875488	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85934393	85934393	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	86000300	86000300	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87241438	87241438	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87558705	87558705	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87984797	87984798	+	IGR	DNP	GG	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	88985526	88985526	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	90608007	90608007	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	91463924	91463924	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	91576170	91576170	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	92080402	92080402	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	92463253	92463253	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	92702476	92702476	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	92988561	92988561	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93802485	93802485	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	94344880	94344880	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	95270586	95270586	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	95313736	95313736	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	98598233	98598233	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	98627638	98627638	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	99228317	99228317	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100634061	100634061	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	101967482	101967482	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	101979313	101979313	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10735403	10735403	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	107449895	107449895	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10849115	10849115	+	IGR	SNP	C	T	T	rs151254500	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108634957	108634957	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108697502	108697502	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109121294	109121294	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109659636	109659636	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109895384	109895385	+	IGR	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	110114507	110114507	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112046222	112046222	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112235565	112235565	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112263037	112263037	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112263058	112263058	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112378243	112378243	+	IGR	SNP	G	C	C	rs6965803	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112378327	112378327	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112878928	112878928	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	113138038	113138038	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	114446497	114446497	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	115442105	115442105	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	116870169	116870169	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	118430280	118430280	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124121387	124121387	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124225260	124225260	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12490561	12490561	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	125746902	125746902	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	125900052	125900052	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	129895793	129895793	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131387338	131387338	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131552281	131552281	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131557656	131557656	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131659257	131659257	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	132432129	132432129	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	132854312	132854312	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	132854813	132854813	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	134063277	134063277	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	134447107	134447107	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	134991089	134991089	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	135025662	135025663	+	IGR	DEL	GT	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	135473730	135473735	+	IGR	DEL	TGTGTA	-	-	rs66491975		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	135941973	135941973	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	135947586	135947586	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136399196	136399196	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	138125732	138125732	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	138126541	138126541	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	13862017	13862017	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	140939030	140939030	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	140955930	140955930	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	140999979	140999979	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141213708	141213708	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141946646	141946646	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143295394	143295394	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143708715	143708715	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144625749	144625749	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144700904	144700904	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144701187	144701187	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144812733	144812733	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144921940	144921940	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145262300	145262300	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148334872	148334872	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	149693287	149693287	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152609699	152609699	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152611418	152611418	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152662895	152662895	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152686167	152686167	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152695367	152695367	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152916337	152916337	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152942931	152942931	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	153335425	153335425	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	153505290	153505291	+	IGR	DEL	GT	-	-	rs35837385		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	155709839	155709839	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	155787263	155787263	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	156291318	156291321	+	IGR	DEL	ACAC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	15885526	15885527	+	IGR	INS	-	AAAC	AAAC	rs147876623	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	159024927	159024927	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	159025349	159025349	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	19828130	19828130	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21261076	21261076	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21449720	21449720	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	22068651	22068651	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	22635303	22635303	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	22921634	22921634	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25408026	25408027	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25483769	25483769	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25579332	25579332	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31370232	31370232	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31452562	31452562	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31488535	31488535	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31489678	31489678	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31512525	31512525	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	32384182	32384182	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	36166461	36166461	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38187070	38187070	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38710113	38710114	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	39548187	39548187	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41032705	41032705	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41222613	41222613	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41293378	41293378	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41384860	41384860	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41562211	41562212	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41573462	41573462	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41620482	41620482	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41825536	41825536	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41940833	41940833	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42625948	42625948	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42690264	42690264	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42738057	42738057	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42754146	42754146	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42787998	42787998	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42792169	42792169	+	IGR	DEL	C	-	-	rs36066922		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42806608	42806608	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42858596	42858596	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	4485078	4485078	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46039903	46039903	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46040332	46040332	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	47036868	47036868	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48886570	48886570	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	51684809	51684809	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52168618	52168618	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52169926	52169926	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52205984	52205984	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52409427	52409427	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52843303	52843304	+	IGR	INS	-	TTTG	TTTG	rs147113037	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52897506	52897507	+	IGR	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52900266	52900266	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53255134	53255134	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53256591	53256591	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53355996	53355996	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53712851	53712851	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930125	53930125	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930582	53930582	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930629	53930629	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54014716	54014716	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54487974	54487974	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55659079	55659079	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56230694	56230695	+	IGR	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56230743	56230743	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56372570	56372570	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56635764	56635764	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56636291	56636291	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665297	56665297	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56706821	56706821	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56707718	56707718	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57128311	57128311	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57128479	57128479	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57128912	57128912	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216954	57216954	+	IGR	SNP	G	T	T	rs75566424	byFrequency;by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57268658	57268658	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57310611	57310611	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57557624	57557624	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57557897	57557897	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57558019	57558019	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57659589	57659589	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57745155	57745155	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57833172	57833172	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57880251	57880251	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61084424	61084424	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61816910	61816910	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61825857	61825857	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61831219	61831219	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61831639	61831639	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62910154	62910154	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62941168	62941168	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63020675	63020675	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63028286	63028286	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63029389	63029389	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63036116	63036117	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63040333	63040333	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63040933	63040933	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63574772	63574772	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63574846	63574846	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63601955	63601955	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63929649	63929649	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64323816	64323816	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	66860414	66860414	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67719880	67719880	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	68357548	68357548	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	68437429	68437429	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	68723770	68723770	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6875129	6875129	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6974814	6974814	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6977552	6977552	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	70444789	70444789	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	71955860	71955860	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	7359649	7359649	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	75730720	75730720	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	76493366	76493366	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	79545194	79545194	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84014380	84014381	+	IGR	INS	-	AC	AC	rs139433200	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84299595	84299595	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84435725	84435725	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84439137	84439138	+	IGR	INS	-	T	T	rs150257067	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84505982	84505982	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	8453065	8453065	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84613003	84613003	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84613902	84613902	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	85010559	85010559	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	85028294	85028294	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	85244501	85244501	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	86088322	86088322	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	86144687	86144687	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	86903746	86903746	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88142046	88142046	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88269409	88269409	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	89265368	89265368	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	90993061	90993061	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	93023310	93023310	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	93809948	93809948	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9403533	9403533	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	94463333	94463333	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9502322	9502322	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	96089329	96089329	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	96377127	96377130	+	IGR	DEL	CTTT	-	-	rs113243068		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9654815	9654815	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	96591267	96591267	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9765960	9765960	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9767647	9767647	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	99559440	99559440	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	99561383	99561383	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	99905561	99905561	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	101763220	101763221	+	IGR	INS	-	T	T	rs35944672		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	102052590	102052590	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	102101504	102101504	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	102109801	102109801	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	107227974	107227974	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	108515313	108515313	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	109355089	109355089	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	110724226	110724226	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	11114010	11114010	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111398230	111398230	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	113067085	113067085	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	11496969	11496969	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	115427060	115427060	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	1156061	1156061	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	115797073	115797073	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116960397	116960397	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	117277380	117277380	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	117450169	117450169	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	117582427	117582427	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	120493095	120493095	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	120493640	120493640	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	123592853	123592853	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	123668102	123668102	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	126533152	126533152	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	126606093	126606093	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130486409	130486409	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	133536893	133536893	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134678321	134678321	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134926531	134926531	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	135766949	135766949	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136159583	136159583	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136202969	136202969	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136239884	136239884	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136342724	136342724	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136370834	136370834	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136746481	136746484	+	IGR	DEL	CCTT	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137033710	137033710	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137041023	137041023	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138067145	138067145	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138258521	138258521	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138525108	138525109	+	IGR	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13880220	13880220	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	139581882	139581882	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	140264550	140264550	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	142044040	142044040	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	15229086	15229086	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	15347924	15347924	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	18171767	18171767	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	1985222	1985222	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20210051	20210051	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20308069	20308069	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20340131	20340131	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20346970	20346970	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20668531	20668531	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	21037429	21037429	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	21040832	21040832	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	21127015	21127015	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	2307787	2307787	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	23858349	23858349	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29435861	29435861	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29678116	29678116	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	31112268	31112268	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33690101	33690101	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33827005	33827005	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34044467	34044467	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	35668965	35668965	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36636611	36636612	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36828262	36828262	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36842007	36842007	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36894476	36894476	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	37308409	37308409	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47005185	47005185	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47010871	47010871	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47011319	47011319	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47018583	47018583	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47019721	47019721	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47125044	47125044	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47186911	47186911	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47331162	47331162	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47335644	47335644	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47336811	47336811	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47336928	47336928	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47339077	47339077	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47339547	47339547	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47342155	47342155	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47344199	47344199	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47885672	47885672	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	4896248	4896248	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	49297394	49297394	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	49537004	49537004	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	49548398	49548398	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	49712085	49712085	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	49718383	49718383	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	49930826	49930826	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	49967830	49967830	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50143072	50143072	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5024386	5024386	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5064188	5064188	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50793581	50793581	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	54450392	54450392	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5477306	5477306	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5504984	5504984	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	55521518	55521518	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	57013701	57013701	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58118588	58118588	+	IGR	SNP	C	A	A	rs10111007		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	60226983	60226983	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	60870213	60870213	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61201073	61201073	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61384206	61384206	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	62125267	62125267	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	62666905	62666906	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64445658	64445658	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64786552	64786552	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65095193	65095193	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	66196026	66196026	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	66290287	66290287	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	6708326	6708326	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	67273210	67273211	+	IGR	INS	-	T	T	rs139224891	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	68318922	68318922	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	6872732	6872732	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	6940893	6940893	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70772108	70772108	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	71012519	71012519	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	72001558	72001558	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	72576163	72576163	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74128130	74128130	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	75090275	75090275	+	IGR	DEL	T	-	-	rs11304169		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	76971837	76971837	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7775414	7775414	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	78103037	78103037	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	78406473	78406473	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	78435795	78435795	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	78533723	78533723	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7886111	7886111	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	79813959	79813959	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	80622312	80622312	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	81178286	81178286	+	IGR	SNP	G	C	C	rs116369081	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82325068	82325068	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82547103	82547103	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82815642	82815642	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82901863	82901863	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83204246	83204246	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83279880	83279880	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83290484	83290484	+	IGR	SNP	G	T	T	rs117430607	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83291146	83291146	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	84516435	84516435	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	85074726	85074726	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88543821	88543821	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89359866	89359866	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89389344	89389344	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91146174	91146174	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91178838	91178838	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91184573	91184573	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91352702	91352702	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92610726	92610726	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92662086	92662086	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92922217	92922217	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93348232	93348232	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93410969	93410969	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93501152	93501152	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94598799	94598799	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94658610	94658610	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	96892799	96892799	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98212628	98212628	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98386871	98386871	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98390901	98390901	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	99313618	99313618	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	101481494	101481494	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	102172883	102172883	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	103358123	103358124	+	IGR	INS	-	CTAT	CTAT	rs75038788	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	103494475	103494475	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	104654008	104654008	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	10742516	10742516	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	107484990	107484990	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109552200	109552200	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	1100752	1100753	+	IGR	INS	-	TT	TT	rs148233031	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	110745376	110745376	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	110793625	110793625	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	111211381	111211381	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	11158507	11158507	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	112365865	112365866	+	IGR	DNP	TG	CT	CT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	11395579	11395579	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	116427566	116427566	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	117777563	117777563	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	1180311	1180311	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118403027	118403027	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118404645	118404645	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118645939	118645939	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118776965	118776965	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118814868	118814868	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120992968	120992969	+	IGR	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122277700	122277700	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122340390	122340390	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122362821	122362821	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122480483	122480483	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122659477	122659477	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	12287908	12287908	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122933227	122933227	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122978659	122978659	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122978862	122978862	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	12416697	12416697	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	124282677	124282677	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	12459444	12459444	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	12534625	12534625	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	125523977	125523977	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	12636894	12636895	+	IGR	DNP	CC	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	126897356	126897356	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	1270146	1270146	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	127957114	127957114	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	128777974	128777974	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	128981611	128981611	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	13032739	13032739	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	131916638	131916638	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	131919070	131919070	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	13640070	13640071	+	IGR	DEL	CA	-	-	rs148722164		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	13872539	13872539	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	13912696	13912697	+	IGR	INS	-	CATT	CATT	rs143270027	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	13986297	13986297	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	13987430	13987430	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	14006088	14006088	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	1470910	1470910	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	14921693	14921693	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	1495501	1495501	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	16120473	16120473	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	16304835	16304835	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	16394618	16394618	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	18027741	18027741	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	1882159	1882159	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	201314	201314	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	20189821	20189822	+	IGR	DEL	AA	-	-	rs150978811		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	21638519	21638519	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22542182	22542182	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22627155	22627155	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	2272974	2272974	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	2276713	2276714	+	IGR	DEL	TC	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	23345087	23345087	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	23443483	23443483	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	23992514	23992514	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	23992516	23992516	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24073416	24073416	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24074374	24074374	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24518764	24518764	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24544421	24544421	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24638858	24638858	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24668817	24668817	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25138613	25138614	+	IGR	INS	-	C	C	rs141474271	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25427413	25427413	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25986767	25986767	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25987856	25987856	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25990489	25990489	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25992729	25992729	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	26058666	26058666	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	26281338	26281338	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	26668152	26668152	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	26693253	26693253	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27719616	27719616	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27766797	27766797	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	2780496	2780497	+	IGR	INS	-	T	T	rs140140241	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27936306	27936306	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29709750	29709750	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29825999	29825999	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29826194	29826194	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30033000	30033000	+	IGR	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	3014022	3014022	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	3014305	3014305	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	3064084	3064084	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30773596	30773596	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30800339	30800339	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30800556	30800556	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30800707	30800707	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30832204	30832204	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30883511	30883511	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31078604	31078605	+	IGR	DEL	AG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31094610	31094611	+	IGR	INS	-	AC	AC	rs144664748	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31106840	31106841	+	IGR	INS	-	A	A	rs144191637	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31254669	31254669	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31671946	31671947	+	IGR	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31814059	31814059	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	32089869	32089869	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	32255038	32255038	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	32338953	32338953	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	32622235	32622235	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	32911078	32911078	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	33566415	33566416	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	35943550	35943550	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	35971975	35971975	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	36698471	36698471	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	38142941	38142941	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	38203660	38203660	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	38454099	38454099	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	38692945	38692946	+	IGR	INS	-	CTGA	CTGA	rs149427459	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	39974523	39974523	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	4303290	4303291	+	IGR	INS	-	AT	AT	rs140532162		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43162913	43162913	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43163036	43163036	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43163176	43163176	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43400344	43400344	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44076660	44076660	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44093214	44093214	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44097437	44097437	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44131231	44131231	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44148322	44148322	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	6158346	6158346	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	6158488	6158488	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66470977	66470977	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66479646	66479646	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66482104	66482104	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66833865	66833865	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67323819	67323819	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67334856	67334856	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67335052	67335052	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68388344	68388344	+	IGR	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68389989	68389989	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68401282	68401282	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68401956	68401956	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68403435	68403435	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68415440	68415440	+	IGR	SNP	G	T	T	rs71186781		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68417670	68417670	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68417917	68417917	+	IGR	SNP	A	T	T	rs66853417		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68418261	68418261	+	IGR	SNP	A	G	G	rs140762899		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68418702	68418702	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68420487	68420487	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68425723	68425723	+	IGR	DEL	C	-	-	rs149468092		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68468862	68468862	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68477451	68477451	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68491168	68491168	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68693029	68693029	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68693031	68693031	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68790253	68790253	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69030334	69030334	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	71226003	71226003	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7195128	7195131	+	IGR	DEL	CATT	-	-	rs67288918		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7229601	7229601	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7261144	7261144	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7296516	7296516	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7475307	7475307	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7482959	7482959	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7584817	7584818	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7605668	7605669	+	IGR	DNP	GA	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76392516	76392516	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7781612	7781612	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78029496	78029496	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78034284	78034284	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78076856	78076856	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78190332	78190332	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78239449	78239449	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78386240	78386240	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78451041	78451041	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78815253	78815253	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	80793169	80793170	+	IGR	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	8116930	8116930	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	8161511	8161512	+	IGR	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81981542	81981542	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	82092170	82092170	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	82393085	82393085	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	83093570	83093570	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84765446	84765446	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	85178856	85178856	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	87709814	87709814	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	88989811	88989811	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90356568	90356568	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90432528	90432528	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90631244	90631244	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	91417766	91417766	+	IGR	SNP	G	A	A	rs141654836	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	94939980	94939980	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	98908583	98908583	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100793915	100793915	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	105634522	105634522	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115804201	115804201	+	IGR	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	118207567	118207567	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122648323	122648323	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	133406866	133406866	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	13397004	13397004	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134774434	134774434	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134812418	134812418	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	137569897	137569898	+	IGR	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	138444474	138444474	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139161769	139161769	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139479261	139479261	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	140985636	140985636	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141261131	141261131	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	14262614	14262614	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144712184	144712184	+	IGR	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150395460	150395460	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150684316	150684316	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151073623	151073623	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155058380	155058380	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	16239686	16239686	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25664050	25664050	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26179297	26179297	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26522514	26522514	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26523214	26523214	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	3061812	3061812	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	34165198	34165198	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	34165247	34165247	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	34165382	34165382	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	34476016	34476016	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37402728	37402728	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39324550	39324550	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	40750088	40750088	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43138441	43138441	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43266958	43266958	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45491749	45491749	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45811391	45811391	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	46048192	46048192	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	5223968	5223968	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52576641	52576641	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52627492	52627492	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52861833	52861833	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	53852761	53852761	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	53852763	53852763	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	58011149	58011149	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	58011479	58011479	+	IGR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	62104081	62104081	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	62519424	62519424	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	6340476	6340476	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63917917	63917917	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64576934	64576934	+	IGR	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64772054	64772054	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65014977	65014977	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65041442	65041442	+	IGR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65296082	65296082	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68003512	68003512	+	IGR	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68161865	68161865	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	6851124	6851124	+	IGR	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	71947866	71947866	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72443223	72443223	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79828470	79828470	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	84010780	84010780	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85098247	85098254	+	IGR	DEL	GGAAGGAG	-	-	rs58834477		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	86934009	86934009	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	879226	879226	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89147435	89147435	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92748797	92748797	+	IGR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97311600	97311600	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	10006243	10006243	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	10028108	10028108	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13272923	13272923	+	IGR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13435996	13435996	+	IGR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13468309	13468309	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13476449	13476449	+	IGR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59001228	59001228	+	IGR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59001562	59001562	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9943987	9943987	+	IGR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9945311	9945311	+	IGR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAC14	55697	broad.mit.edu	37	16	70721913	70721913	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAC14	55697	broad.mit.edu	37	16	70796985	70796985	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP4	8674	broad.mit.edu	37	1	171675514	171675514	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VARS	7407	broad.mit.edu	37	6	31759427	31759427	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	78005633	78005633	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	78005651	78005651	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV1	7409	broad.mit.edu	37	19	6793016	6793016	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV2	7410	broad.mit.edu	37	9	136661676	136661676	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108160138	108160138	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108185134	108185134	+	Intron	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108185308	108185308	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108209071	108209071	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108313276	108313276	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108315499	108315499	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101185528	101185528	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101188704	101188704	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101189029	101189029	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82849088	82849088	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFA	7422	broad.mit.edu	37	6	43749660	43749660	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177642703	177642703	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177648872	177648872	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177648969	177648969	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEPH1	79674	broad.mit.edu	37	3	157188013	157188013	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEPH1	79674	broad.mit.edu	37	3	157188025	157188025	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL1	51442	broad.mit.edu	37	X	135618477	135618477	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VHLL	391104	broad.mit.edu	37	1	156269058	156269058	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPR2	7434	broad.mit.edu	37	7	158829634	158829634	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPR2	7434	broad.mit.edu	37	7	158935105	158935105	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	36956680	36956680	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	36970442	36970442	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VN1R5	317705	broad.mit.edu	37	1	247420195	247420195	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPRBP	9730	broad.mit.edu	37	3	51449799	51449799	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPRBP	9730	broad.mit.edu	37	3	51455980	51455980	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100182249	100182249	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100182286	100182286	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100568576	100568576	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100587926	100587926	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62333625	62333625	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62336370	62336370	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12302700	12302700	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS33A	65082	broad.mit.edu	37	12	122717273	122717273	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184580512	184580512	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG1	340547	broad.mit.edu	37	X	107316255	107316255	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG8	391123	broad.mit.edu	37	1	159825855	159825855	+	Silent	SNP	G	T	T	rs148311082	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSX1	30813	broad.mit.edu	37	20	25062171	25062171	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTCN1	79679	broad.mit.edu	37	1	117692222	117692222	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTCN1	79679	broad.mit.edu	37	1	117714866	117714866	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3A	146177	broad.mit.edu	37	16	22144347	22144347	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3A	146177	broad.mit.edu	37	16	22158801	22158801	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3A	146177	broad.mit.edu	37	16	22167328	22167328	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98779259	98779259	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98850945	98850945	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA5A	4013	broad.mit.edu	37	11	124007022	124007022	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA5B1	127731	broad.mit.edu	37	1	20648291	20648291	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61035004	61035004	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6103847	6103847	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6122739	6122739	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27219000	27219000	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27256784	27256784	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP1	23559	broad.mit.edu	37	2	74687330	74687330	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP2NL	164684	broad.mit.edu	37	22	42415925	42415925	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70648184	70648185	+	Intron	DEL	GG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70846959	70846959	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70885875	70885875	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70961529	70961529	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70964294	70964294	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71036498	71036498	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY1	57590	broad.mit.edu	37	2	224760411	224760411	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY2	115825	broad.mit.edu	37	13	52234889	52234889	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY4	57705	broad.mit.edu	37	10	50012351	50012351	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177073085	177073085	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR35	57539	broad.mit.edu	37	2	20113304	20113304	+	3'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR35	57539	broad.mit.edu	37	2	20130107	20130107	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR35	57539	broad.mit.edu	37	2	20173448	20173448	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR3	10885	broad.mit.edu	37	1	118476179	118476180	+	Intron	INS	-	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR3	10885	broad.mit.edu	37	1	118495318	118495318	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR43	23160	broad.mit.edu	37	2	29164533	29164533	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167246875	167246875	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113139050	113139050	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR59	79726	broad.mit.edu	37	16	74943649	74943649	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR61	80349	broad.mit.edu	37	15	78587210	78587210	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36590381	36590381	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR75	84128	broad.mit.edu	37	2	190340070	190340070	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR77	79084	broad.mit.edu	37	1	111985269	111985269	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54446481	54446481	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54668684	54668684	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR87	83889	broad.mit.edu	37	19	38384746	38384746	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR88	126248	broad.mit.edu	37	19	33628604	33628604	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR88	126248	broad.mit.edu	37	19	33666482	33666482	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR92	116143	broad.mit.edu	37	2	68371621	68371621	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDTC1	23038	broad.mit.edu	37	1	27627882	27627883	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC12	128488	broad.mit.edu	37	20	43752871	43752871	+	Missense_Mutation	SNP	C	A	A	rs148261601	byFrequency	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC1	58189	broad.mit.edu	37	16	84360443	84360443	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC5	149708	broad.mit.edu	37	20	43743821	43743821	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC8	90199	broad.mit.edu	37	20	44207955	44207955	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFIKKN2	124857	broad.mit.edu	37	17	48918082	48918082	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1L1	54904	broad.mit.edu	37	8	38184143	38184143	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1L1	54904	broad.mit.edu	37	8	38204962	38204962	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1	7468	broad.mit.edu	37	4	1953784	1953784	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP3	8838	broad.mit.edu	37	6	112386072	112386072	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP3	8838	broad.mit.edu	37	6	112390860	112390860	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIZ	58525	broad.mit.edu	37	19	15559178	15559178	+	5'UTR	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WLS	79971	broad.mit.edu	37	1	68638732	68638732	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	936338	936338	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	990989	990989	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK4	65266	broad.mit.edu	37	17	40933114	40933114	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK4	65266	broad.mit.edu	37	17	40937188	40937188	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK4	65266	broad.mit.edu	37	17	40939379	40939379	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT10A	80326	broad.mit.edu	37	2	219747107	219747107	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT10B	7480	broad.mit.edu	37	12	49362188	49362188	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT11	7481	broad.mit.edu	37	11	75907653	75907653	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT2	7472	broad.mit.edu	37	7	116955360	116955360	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT5B	81029	broad.mit.edu	37	12	1748995	1748995	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT5B	81029	broad.mit.edu	37	12	1755323	1755323	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT8A	7478	broad.mit.edu	37	5	137423338	137423339	+	Intron	INS	-	AA	AA	rs66902804		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT8B	7479	broad.mit.edu	37	10	102242450	102242450	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT9B	7484	broad.mit.edu	37	17	44949909	44949909	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRB	7485	broad.mit.edu	37	21	40765318	40765318	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	5993787	5993787	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	6014021	6014021	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	6023521	6023521	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WTAP	9589	broad.mit.edu	37	6	160157395	160157395	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WTAP	9589	broad.mit.edu	37	6	160176694	160176694	+	3'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC2	80014	broad.mit.edu	37	4	184187120	184187120	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC3	55841	broad.mit.edu	37	X	10066580	10066580	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC3	55841	broad.mit.edu	37	X	10085242	10085242	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78567503	78567503	+	Intron	DEL	C	-	-	rs2667623	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78791223	78791230	+	Intron	DEL	ACCCCAGC	-	-	rs112499853		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP2	11060	broad.mit.edu	37	16	69878421	69878421	+	Intron	DEL	G	-	-	rs3842520		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31558753	31558754	+	3'UTR	DNP	CT	TG	TG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31587189	31587190	+	Intron	DNP	CC	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP1	165904	broad.mit.edu	37	3	39227079	39227079	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP1	165904	broad.mit.edu	37	3	39228033	39228033	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	167883360	167883361	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168103170	168103170	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56254038	56254038	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10756712	10756712	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPC	7508	broad.mit.edu	37	3	14206561	14206561	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128896628	128896628	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO4	64328	broad.mit.edu	37	13	21416970	21416970	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180824636	180824636	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142102103	142102103	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142166802	142166802	+	5'UTR	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN2	22803	broad.mit.edu	37	20	21326914	21326914	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRRA1	143570	broad.mit.edu	37	11	74555423	74555423	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF7	285525	broad.mit.edu	37	4	44626581	44626581	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135743637	135743637	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135762841	135762841	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDC2	64848	broad.mit.edu	37	5	112877995	112877995	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAK	51776	broad.mit.edu	37	2	174128549	174128549	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100352835	100352836	+	Intron	INS	-	G	G	rs145118358	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100388864	100388864	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100389700	100389700	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100391854	100391854	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAP70	7535	broad.mit.edu	37	2	98349312	98349312	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAP70	7535	broad.mit.edu	37	2	98349367	98349367	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED2	79413	broad.mit.edu	37	3	111312893	111312893	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED2	79413	broad.mit.edu	37	3	111312927	111312927	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBP1	81030	broad.mit.edu	37	20	56179863	56179863	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBP1	81030	broad.mit.edu	37	20	56191317	56191317	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB10	65986	broad.mit.edu	37	8	81412348	81412348	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB16	7704	broad.mit.edu	37	11	114018944	114018944	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB16	7704	broad.mit.edu	37	11	114099620	114099620	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB20	26137	broad.mit.edu	37	3	114069647	114069647	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB26	57684	broad.mit.edu	37	9	125682054	125682054	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB2	57621	broad.mit.edu	37	6	151688152	151688152	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB38	253461	broad.mit.edu	37	3	141053322	141053322	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB3	79842	broad.mit.edu	37	11	62521620	62521620	+	5'UTR	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB7C	201501	broad.mit.edu	37	18	45636701	45636702	+	Intron	INS	-	A	A	rs36055075		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB7C	201501	broad.mit.edu	37	18	45703577	45703577	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB7C	201501	broad.mit.edu	37	18	45706377	45706377	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H10	84872	broad.mit.edu	37	12	56514389	56514389	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H11A	9877	broad.mit.edu	37	1	203809456	203809456	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H14	79882	broad.mit.edu	37	14	89074628	89074628	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H4	23211	broad.mit.edu	37	19	47575029	47575029	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HC1	51530	broad.mit.edu	37	7	129691050	129691050	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52903977	52903977	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC13	389874	broad.mit.edu	37	X	73524209	73524209	+	Silent	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC2	54877	broad.mit.edu	37	18	60224182	60224183	+	Intron	DNP	GG	TT	TT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC7	84186	broad.mit.edu	37	9	37205284	37205284	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC7	84186	broad.mit.edu	37	9	37346671	37346671	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC8	55596	broad.mit.edu	37	12	122968060	122968060	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCWPW1	55063	broad.mit.edu	37	7	99999350	99999350	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207170388	207170388	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207172478	207172478	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207174982	207174982	+	Silent	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC16	84287	broad.mit.edu	37	10	99212640	99212640	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC18	84243	broad.mit.edu	37	1	27158148	27158148	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC22	283576	broad.mit.edu	37	14	77605928	77605928	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31812931	31812931	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145147418	145147418	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145153936	145153936	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145159004	145159004	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145182411	145182411	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND3	60685	broad.mit.edu	37	6	38064696	38064696	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND3	60685	broad.mit.edu	37	6	38084608	38084608	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAT	57623	broad.mit.edu	37	8	135517933	135517933	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAT	57623	broad.mit.edu	37	8	135651148	135651149	+	Intron	DNP	CA	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77619997	77619997	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77761709	77761709	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP112	7771	broad.mit.edu	37	19	44901057	44901058	+	Intron	DEL	AA	-	-	rs112158433		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP30	22835	broad.mit.edu	37	19	38126701	38126701	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP57	346171	broad.mit.edu	37	6	29643738	29643738	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP90	146198	broad.mit.edu	37	16	68597847	68597847	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106365453	106365453	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106659547	106659547	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFR	51663	broad.mit.edu	37	5	32397468	32397468	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFR	51663	broad.mit.edu	37	5	32419823	32419823	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE19	84936	broad.mit.edu	37	15	41102329	41102329	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE1	53349	broad.mit.edu	37	14	73448514	73448514	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE20	64145	broad.mit.edu	37	3	15116213	15116213	+	Silent	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68272117	68272117	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52626287	52626287	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52704428	52704428	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZGPAT	84619	broad.mit.edu	37	20	62366088	62366088	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZHX2	22882	broad.mit.edu	37	8	123847789	123847789	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147130340	147130340	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC2	7546	broad.mit.edu	37	13	100637555	100637555	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147109013	147109013	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN2	342357	broad.mit.edu	37	16	25251549	25251549	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40532236	40532236	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40695510	40695510	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40723463	40723463	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM4	9202	broad.mit.edu	37	1	35862031	35862031	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45878004	45878004	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF101	94039	broad.mit.edu	37	19	19789937	19789937	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF101	94039	broad.mit.edu	37	19	19790269	19790269	+	Silent	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF107	51427	broad.mit.edu	37	7	64168335	64168335	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF10	7556	broad.mit.edu	37	12	133732556	133732556	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF117	51351	broad.mit.edu	37	7	64438324	64438324	+	3'UTR	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF117	51351	broad.mit.edu	37	7	64453398	64453398	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF14	7561	broad.mit.edu	37	19	19824950	19824950	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF169	169841	broad.mit.edu	37	9	97062816	97062816	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF174	7727	broad.mit.edu	37	16	3458302	3458302	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF17	7565	broad.mit.edu	37	19	57929296	57929296	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22155237	22155237	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22156942	22156942	+	Silent	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF214	7761	broad.mit.edu	37	11	7024026	7024026	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF230	7773	broad.mit.edu	37	19	44511326	44511326	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74585794	74585794	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74597644	74597644	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280B	140883	broad.mit.edu	37	22	22842728	22842728	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280D	54816	broad.mit.edu	37	15	56958410	56958410	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF318	24149	broad.mit.edu	37	6	43296108	43296108	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF318	24149	broad.mit.edu	37	6	43308232	43308232	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF331	55422	broad.mit.edu	37	19	54080202	54080202	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF341	84905	broad.mit.edu	37	20	32336593	32336593	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF341	84905	broad.mit.edu	37	20	32344884	32344884	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF346	23567	broad.mit.edu	37	5	176468840	176468840	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64136068	64136068	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64158504	64158504	+	Silent	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64260707	64260707	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64393475	64393475	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF37A	7587	broad.mit.edu	37	10	38397688	38397689	+	Intron	INS	-	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385B	151126	broad.mit.edu	37	2	180424073	180424073	+	Intron	DEL	G	-	-	rs55819846		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21467209	21467209	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21478514	21478514	+	Silent	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21505102	21505102	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21546696	21546696	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21700477	21700477	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21706527	21706527	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	22270839	22270839	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72338181	72338181	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72345693	72345693	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF417	147687	broad.mit.edu	37	19	58419053	58419053	+	3'UTR	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF41	7592	broad.mit.edu	37	X	47306910	47306910	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF428	126299	broad.mit.edu	37	19	44111923	44111923	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF430	80264	broad.mit.edu	37	19	21239530	21239530	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF462	58499	broad.mit.edu	37	9	109688018	109688018	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF462	58499	broad.mit.edu	37	9	109727606	109727606	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF473	25888	broad.mit.edu	37	19	50549719	50549719	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22817463	22817463	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22847837	22847837	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF507	22847	broad.mit.edu	37	19	32852601	32852602	+	Intron	INS	-	CTTT	CTTT	rs146661098	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF514	84874	broad.mit.edu	37	2	95819058	95819058	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF516	9658	broad.mit.edu	37	18	74154036	74154036	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22642526	22642526	+	3'UTR	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22693140	22693140	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22805578	22805578	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22807491	22807491	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22824247	22824250	+	Intron	DEL	CACA	-	-	rs150932854		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF527	84503	broad.mit.edu	37	19	37880419	37880419	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935452	30935452	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30967572	30967572	+	Intron	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF549	256051	broad.mit.edu	37	19	58042541	58042541	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF549	256051	broad.mit.edu	37	19	58048848	58048848	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF556	80032	broad.mit.edu	37	19	2877559	2877559	+	Missense_Mutation	SNP	A	C	C	rs144140574		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF568	374900	broad.mit.edu	37	19	37482137	37482137	+	Silent	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF582	147948	broad.mit.edu	37	19	56895530	56895530	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF592	9640	broad.mit.edu	37	15	85342601	85342601	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	54574	54574	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF606	80095	broad.mit.edu	37	19	58491795	58491795	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53210019	53210019	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF618	114991	broad.mit.edu	37	9	116697589	116697589	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF621	285268	broad.mit.edu	37	3	40573774	40573774	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF628	89887	broad.mit.edu	37	19	55994074	55994074	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF648	127665	broad.mit.edu	37	1	182025428	182025428	+	3'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF652	22834	broad.mit.edu	37	17	47389454	47389454	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF652	22834	broad.mit.edu	37	17	47390085	47390085	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF658	26149	broad.mit.edu	37	9	40784686	40784686	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF664	144348	broad.mit.edu	37	12	124482574	124482574	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF667	63934	broad.mit.edu	37	19	56953401	56953401	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF670	93474	broad.mit.edu	37	1	247202613	247202613	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF675	171392	broad.mit.edu	37	19	23836621	23836621	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22362542	22362542	+	3'UTR	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22363682	22363682	+	Missense_Mutation	SNP	C	A	A	rs11671496		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF683	257101	broad.mit.edu	37	1	26691442	26691442	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF69	7620	broad.mit.edu	37	19	12015049	12015049	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF704	619279	broad.mit.edu	37	8	81582715	81582715	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF704	619279	broad.mit.edu	37	8	81751193	81751193	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF706	51123	broad.mit.edu	37	8	102212243	102212243	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF706	51123	broad.mit.edu	37	8	102212294	102212294	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF708	7562	broad.mit.edu	37	19	21492212	21492212	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57522109	57522109	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF718	255403	broad.mit.edu	37	4	106353	106353	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF738	148203	broad.mit.edu	37	19	21544426	21544426	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185802931	185802931	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185802946	185802946	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185803677	185803678	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88709204	88709204	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57766770	57766770	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57767137	57767137	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57769045	57769045	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57828336	57828336	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF876P	642280	broad.mit.edu	37	4	206433	206433	+	RNA	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF880	400713	broad.mit.edu	37	19	52876622	52876622	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF90	7643	broad.mit.edu	37	19	20228554	20228554	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23527640	23527640	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23545398	23545398	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF98	148198	broad.mit.edu	37	19	22575654	22575654	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22939747	22939747	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22940021	22940021	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22940569	22940569	+	Silent	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22941809	22941809	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP1	22917	broad.mit.edu	37	11	60635067	60635067	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP1	22917	broad.mit.edu	37	11	60638374	60638374	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP1	22917	broad.mit.edu	37	11	60638651	60638651	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048069	238048069	+	Silent	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048727	238048727	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238050499	238050499	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238053589	238053589	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP	11055	broad.mit.edu	37	7	49977221	49977221	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP	11055	broad.mit.edu	37	7	49983061	49983061	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP	11055	broad.mit.edu	37	7	49983902	49983903	+	Intron	DNP	CT	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP	11055	broad.mit.edu	37	7	49983941	49983941	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102181032	102181032	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102196310	102196310	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58558264	58558264	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN20	7579	broad.mit.edu	37	1	33953933	33953933	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN20	7579	broad.mit.edu	37	1	33954282	33954282	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZUFSP	221302	broad.mit.edu	37	6	116966866	116966866	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZXDC	79364	broad.mit.edu	37	3	126157259	126157259	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19967333	19967333	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30998251	30998251	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3702837	3702837	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3759796	3759796	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	45403704	45403704	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	102677925	102677925	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	10420283	10420283	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	10424131	10424131	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104779647	104779648	+	5'Flank	DNP	CC	AT	AT			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	113661503	113661503	+	RNA	SNP	C	A	A	rs148573093	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119331181	119331181	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119349153	119349153	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124055982	124055982	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30953234	30953234	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45730706	45730706	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45730848	45730848	+	5'Flank	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45731785	45731786	+	5'Flank	DNP	GA	AG	AG			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45736621	45736622	+	5'Flank	DNP	CT	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55065724	55065725	+	5'Flank	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71117665	71117665	+	RNA	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81737357	81737357	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81780356	81780356	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81805049	81805049	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81995192	81995192	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	83056213	83056213	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	105155094	105155094	+	RNA	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115195130	115195130	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	2042054	2042057	+	Intron	DEL	ATGT	-	-	rs150655645		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	22495484	22495485	+	Intron	INS	-	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31284282	31284282	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40922097	40922097	+	RNA	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40943746	40943746	+	RNA	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74564805	74564805	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8048362	8048362	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80750543	80750543	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22620932	22620932	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22708377	22708377	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	24515978	24515978	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	44720745	44720745	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54705056	54705056	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79128676	79128676	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	97600404	97600404	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19612939	19612939	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19613894	19613894	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19856990	19856990	+	RNA	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22265845	22265845	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22309869	22309869	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22315123	22315123	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22362738	22362738	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22362751	22362751	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22392367	22392367	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22433878	22433878	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22440963	22440963	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22466043	22466043	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22480202	22480202	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22554927	22554927	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22631091	22631091	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22740593	22740593	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22891595	22891595	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22968446	22968446	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22998503	22998503	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	27975723	27975723	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	38118673	38118673	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39323427	39323427	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	88513570	88513570	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96217359	96217359	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96217412	96217412	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98099916	98099916	+	RNA	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102322231	102322231	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20489070	20489070	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20490534	20490534	+	RNA	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20491283	20491283	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20588507	20588507	+	3'UTR	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20594754	20594754	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20597663	20597663	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20600489	20600489	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20607010	20607010	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20622114	20622114	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22041051	22041052	+	5'Flank	DNP	GG	TT	TT	rs142557027	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22041537	22041537	+	5'Flank	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22466240	22466240	+	5'Flank	SNP	G	C	C	rs116210956	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22473491	22473492	+	5'Flank	DNP	GG	TA	TA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25532997	25532997	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	38480370	38480370	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	38482218	38482218	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	62547836	62547836	+	5'Flank	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76074553	76074553	+	Intron	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	80561474	80561474	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84947213	84947213	+	RNA	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	90838761	90838761	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	93974048	93974048	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	93974351	93974351	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	95838507	95838507	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29113291	29113291	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34741400	34741400	+	5'Flank	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34980189	34980189	+	5'Flank	SNP	C	G	G	rs116222617	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34984525	34984525	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	72463013	72463013	+	5'Flank	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	90274184	90274184	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	10385745	10385745	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	18303552	18303552	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20405855	20405855	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21731043	21731043	+	Silent	SNP	C	T	T	rs112378881		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25753918	25753918	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37188577	37188577	+	RNA	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	42003485	42003485	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	78268749	78268749	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	24941263	24941264	+	Intron	INS	-	T	T	rs146813134	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	24994556	24994556	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	24999266	24999266	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25147357	25147358	+	Intron	DEL	TG	-	-	rs139121732	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39852937	39852937	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40018283	40018283	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40039876	40039876	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40041786	40041786	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40065336	40065336	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	44993369	44993369	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	53774262	53774262	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	69237454	69237454	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15871990	15871990	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15880824	15880824	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15882930	15882930	+	RNA	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22781997	22781997	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22803516	22803516	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23318744	23318744	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23329342	23329342	+	RNA	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23405891	23405891	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23406355	23406355	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	24117183	24117183	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29091462	29091462	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35136441	35136454	+	Intron	DEL	ACACAGACACACAC	-	-	rs72337452	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	47062749	47062749	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142620344	142620344	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142620429	142620429	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142631820	142631820	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142673585	142673585	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142791213	142791213	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142816390	142816390	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142860771	142860771	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142957963	142957963	+	Intron	SNP	T	C	C	rs146436834	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143163836	143163836	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143209222	143209222	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143462964	143462964	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	144019280	144019280	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	144032608	144032608	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158107045	158107045	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165677616	165677616	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	173332425	173332425	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	20747676	20747676	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	20753405	20753405	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	214119151	214119151	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	225896148	225896148	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	4006309	4006309	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	61213146	61213146	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	61213408	61213408	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	61213903	61213903	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	68428838	68428838	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	84289673	84289673	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	22951013	22951013	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23169268	23169269	+	RNA	DEL	TG	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	31549218	31549218	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	57159887	57159888	+	Intron	INS	-	CTTC	CTTC	rs142796198	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	58859834	58859834	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20126016	20126016	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	23406028	23406028	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16160503	16160503	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	48047140	48047140	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	114320703	114320703	+	5'Flank	SNP	G	T	T	rs2418665		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131453182	131453182	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14449411	14449411	+	Intron	DEL	A	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	145609606	145609606	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	145854545	145854545	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	182030562	182030562	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	203044188	203044188	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	40147585	40147585	+	5'Flank	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58824877	58824877	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	59092302	59092302	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	66042216	66042216	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	75157621	75157621	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	8223956	8223956	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89196651	89196652	+	Intron	DEL	CA	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89266285	89266285	+	Intron	SNP	G	A	A	rs112258232		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89278330	89278330	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89291948	89291948	+	RNA	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89292063	89292063	+	RNA	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89292306	89292306	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89320023	89320023	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89544379	89544379	+	RNA	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89967200	89967200	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90025457	90025457	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90047709	90047709	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90049970	90049970	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90060771	90060771	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90061063	90061063	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90153537	90153537	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90153637	90153637	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90439941	90439941	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96079964	96079964	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	113950175	113950175	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	113951881	113951881	+	Intron	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	118287289	118287289	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	118292082	118292082	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	118400104	118400104	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	118507401	118507401	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	126915964	126915964	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	127202171	127202171	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	12905657	12905657	+	5'Flank	DEL	G	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	178061610	178061610	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180539233	180539233	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180547438	180547438	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	18285623	18285623	+	Intron	DEL	G	-	-	rs35007700		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	22423609	22423609	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	22424047	22424047	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	72136513	72136513	+	Intron	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	742511	742511	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82354702	82354702	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82368773	82368773	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	8499745	8499745	+	Intron	SNP	T	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134046201	134046201	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13743160	13743160	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13800881	13800881	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13801312	13801312	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13801324	13801324	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14669647	14669647	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	170899037	170899038	+	5'Flank	INS	-	AA	AA	rs140645173	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190819012	190819012	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190845824	190845824	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33969824	33969824	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	58327324	58327324	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69343281	69343281	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69362485	69362485	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	80110834	80110834	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9240980	9240980	+	5'UTR	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152182090	152182090	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	17894338	17894338	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23972165	23972165	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29151163	29151163	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34190791	34190791	+	5'Flank	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34191581	34191581	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	3520693	3520693	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8400967	8400967	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100024236	100024236	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	11485891	11485891	+	5'Flank	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	119797653	119797653	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	119798679	119798679	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	127108422	127108422	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	140101300	140101300	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	147183630	147183630	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	1515076	1515076	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	1515541	1515607	+	Intron	DEL	GAGCTGCTGCTTCACACTGACTTACACGGTGAGCAGCGGCGGCAGGGGAGGAGGTGGAACCCGCGGC	-	-	rs66528622	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	41467992	41467992	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	5004275	5004275	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9725690	9725691	+	Intron	INS	-	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9908766	9908766	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9933208	9933208	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9933437	9933437	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100550013	100550013	+	5'Flank	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100552276	100552276	+	RNA	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100552307	100552307	+	RNA	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100607638	100607638	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	106242622	106242622	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	106246490	106246490	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	123785626	123785626	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124904782	124904782	+	5'Flank	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141942106	141942106	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142009018	142009018	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142028382	142028382	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142045189	142045189	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142045333	142045333	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142045611	142045611	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142104690	142104690	+	Intron	DEL	T	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142123952	142123952	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142139451	142139451	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142143454	142143454	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142239909	142239909	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142329970	142329970	+	Intron	DEL	A	-	-	rs11383112		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142353463	142353463	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142364628	142364628	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142420927	142420927	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142423624	142423625	+	Intron	DNP	CC	TA	TA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142448181	142448181	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142498826	142498826	+	RNA	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	19183837	19183837	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37730105	37730105	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37799249	37799249	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37860963	37860963	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38398141	38398141	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38407933	38407933	+	Intron	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57696524	57696524	+	5'Flank	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63204007	63204007	+	5'Flank	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63206833	63206833	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63370178	63370178	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63370789	63370789	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84183831	84183831	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84197996	84197996	+	Intron	SNP	A	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	99578429	99578430	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	104135744	104135744	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12443604	12443604	+	Intron	SNP	T	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12446133	12446133	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	128390324	128390324	+	Intron	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58135495	58135495	+	Intron	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73298377	73298377	+	Intron	SNP	G	C	C	rs35415536		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	105984213	105984213	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109029090	109029090	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	15034501	15034501	+	Intron	SNP	C	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22663656	22663656	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22823301	22823301	+	RNA	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66455393	66455393	+	Intron	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66456360	66456360	+	Intron	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66457986	66457986	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66458375	66458375	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66459809	66459809	+	5'Flank	SNP	A	G	G	rs28440808		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66459890	66459890	+	5'Flank	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66468782	66468782	+	RNA	SNP	C	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68408073	68408073	+	5'Flank	SNP	C	T	T	rs145828298	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68410878	68410878	+	Intron	SNP	G	A	A	rs144049309	by1000genomes	TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68412438	68412438	+	RNA	SNP	A	C	C	rs112860637		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68413562	68413563	+	RNA	INS	-	G	G	rs71256949		TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	99883858	99883858	+	RNA	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	10546	10546	+	5'Flank	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	1570	1570	+	5'Flank	SNP	G	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	221880	221880	+	Intron	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43137520	43137520	+	5'Flank	SNP	G	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48163727	48163727	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17126519	17126519	+	Intron	SNP	A	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
