Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA4	24	broad.mit.edu	37	1	94491773	94491774	+	Intron	INS	-	C	C	rs146210738	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67024796	67024796	+	Intron	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87079176	87079176	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87081222	87081222	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22085879	22085879	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD11	83451	broad.mit.edu	37	7	73152067	73152067	+	Splice_Site	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35615386	35615386	+	Intron	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31591356	31591356	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32126579	32126579	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80639604	80639604	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL4	2182	broad.mit.edu	37	X	108924111	108924111	+	Intron	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236894717	236894717	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACYP2	98	broad.mit.edu	37	2	54428012	54428013	+	Intron	INS	-	GT	GT	rs145654225	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127764647	127764647	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127839102	127839102	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87792441	87792441	+	Silent	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106812183	106812183	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106825004	106825004	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106825288	106825294	+	Intron	DEL	TTGTCTT	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107048609	107048610	+	Intron	DEL	CC	-	-	rs34705140		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107199517	107199517	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18904472	18904472	+	Intron	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1572293	1572293	+	Intron	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1750446	1750446	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AEBP2	121536	broad.mit.edu	37	12	19646679	19646679	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147891188	147891188	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86740841	86740841	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL2	79841	broad.mit.edu	37	11	47736333	47736334	+	5'Flank	INS	-	C	C	rs141943146	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP10	11216	broad.mit.edu	37	17	19868214	19868216	+	Intron	DEL	AAC	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105188012	105188012	+	Intron	DEL	G	-	-	rs78637040		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3A2	224	broad.mit.edu	37	17	19576290	19576290	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1L	200810	broad.mit.edu	37	3	125651602	125651603	+	Intron	INS	-	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	30067726	30067733	+	Intron	DEL	CACACACA	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMFR	267	broad.mit.edu	37	16	56417022	56417022	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38588495	38588496	+	Intron	DEL	GT	-	-	rs57068643		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY2A	279	broad.mit.edu	37	1	104160331	104160331	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54547144	54547145	+	Intron	INS	-	T	T	rs147460402	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD11	29123	broad.mit.edu	37	16	89346349	89346349	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20A4	728747	broad.mit.edu	37	9	69420582	69420582	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26328429	26328430	+	Intron	INS	-	T	T	rs143176376	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69411196	69411197	+	Intron	DEL	CA	-	-	rs66480718		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201515911	201515911	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99126093	99126093	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35234266	35234266	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68172248	68172248	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP22	58504	broad.mit.edu	37	10	49710693	49710693	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP29	9411	broad.mit.edu	37	1	94669513	94669513	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF18	23370	broad.mit.edu	37	19	7531739	7531739	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRB1	408	broad.mit.edu	37	11	74994399	74994399	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASNS	440	broad.mit.edu	37	7	97498484	97498484	+	5'UTR	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF7IP	55729	broad.mit.edu	37	12	14598327	14598328	+	Intron	INS	-	T	T	rs111253633		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113487073	113487074	+	Intron	INS	-	C	C	rs145913126	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5O	539	broad.mit.edu	37	21	35281302	35281302	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B2	57198	broad.mit.edu	37	1	154306330	154306331	+	Intron	INS	-	A	A	rs146039327	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACH2	60468	broad.mit.edu	37	6	90843945	90843945	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11021825	11021825	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11025647	11025647	+	Intron	SNP	T	A	A	rs79830857		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11030646	11030646	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11057368	11057368	+	Intron	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11061773	11061773	+	Intron	SNP	G	C	C	rs10446177		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11100123	11100123	+	5'Flank	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI1	575	broad.mit.edu	37	8	143569692	143569692	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAR3	8412	broad.mit.edu	37	1	94242991	94242991	+	Intron	SNP	C	A	A	rs111445690		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165515095	165515099	+	Intron	DEL	CCCTT	-	-	rs142594104		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICD1	636	broad.mit.edu	37	12	32459005	32459005	+	Silent	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	33958671	33958671	+	Intron	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	95883302	95883302	+	Intron	DEL	C	-	-	rs67656237		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL1	80341	broad.mit.edu	37	20	31604934	31604934	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105942139	105942139	+	Silent	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf49	79096	broad.mit.edu	37	11	47182780	47182780	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf66	144577	broad.mit.edu	37	12	64591360	64591360	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81258990	81258990	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf37	145407	broad.mit.edu	37	14	58729756	58729756	+	Intron	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24924603	24924603	+	3'UTR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf58	390637	broad.mit.edu	37	15	90784057	90784057	+	Intron	DEL	T	-	-	rs113126276		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf63	55731	broad.mit.edu	37	17	27086257	27086258	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf53	28974	broad.mit.edu	37	19	13885425	13885425	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1GALT1	56913	broad.mit.edu	37	7	7278574	7278574	+	Intron	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF9B	387911	broad.mit.edu	37	13	24471206	24471206	+	5'Flank	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf115	79762	broad.mit.edu	37	1	220869867	220869867	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf159	54991	broad.mit.edu	37	1	1035022	1035022	+	Intron	SNP	A	G	G	rs141736713	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf54	79630	broad.mit.edu	37	1	150246364	150246365	+	Intron	DEL	GA	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf86	51057	broad.mit.edu	37	2	63439152	63439152	+	Intron	SNP	G	A	A	rs141189776	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf29	80167	broad.mit.edu	37	4	128910977	128910977	+	Splice_Site	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf134	79969	broad.mit.edu	37	6	30608890	30608893	+	Intron	DEL	ACAT	-	-	rs3130038		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf35	729515	broad.mit.edu	37	6	157735352	157735352	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf72	116254	broad.mit.edu	37	6	149901549	149901549	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40807151	40807151	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf25	203259	broad.mit.edu	37	9	34431505	34431505	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf82	79886	broad.mit.edu	37	9	26886165	26886165	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2500189	2500189	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54751774	54751776	+	Intron	DEL	GTG	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG3	10368	broad.mit.edu	37	16	24372930	24372930	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159151878	159151879	+	Intron	INS	-	CA	CA	rs148374819	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159159589	159159589	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1D	57118	broad.mit.edu	37	10	12547839	12547839	+	Intron	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPG	822	broad.mit.edu	37	2	85624828	85624831	+	Intron	DEL	AAAG	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44147251	44147252	+	Intron	DEL	AC	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN2	65981	broad.mit.edu	37	12	30864403	30864403	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN2	65981	broad.mit.edu	37	12	30864410	30864410	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPZB	832	broad.mit.edu	37	1	19814717	19814718	+	5'Flank	INS	-	T	T	rs143256092	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31613984	31613985	+	Intron	DNP	GC	AA	AA			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC130	81576	broad.mit.edu	37	19	13873418	13873418	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC144NL	339184	broad.mit.edu	37	17	20768862	20768862	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85626623	85626623	+	Intron	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88C	440193	broad.mit.edu	37	14	91844358	91844359	+	Intron	INS	-	G	G	rs148160005	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC8	83987	broad.mit.edu	37	19	46914333	46914333	+	3'UTR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80196740	80196740	+	Intron	DEL	T	-	-	rs71518993		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD46	4179	broad.mit.edu	37	1	207943592	207943592	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD48	962	broad.mit.edu	37	1	160657060	160657060	+	Intron	DEL	C	-	-	rs71090319		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60086855	60086855	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60326595	60326595	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202698423	202698425	+	Intron	DEL	TCT	-	-	rs66588345		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM20	125931	broad.mit.edu	37	19	45035081	45035081	+	5'Flank	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP170	9859	broad.mit.edu	37	1	243362555	243362555	+	Intron	SNP	C	T	T	rs147033751	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFI	3426	broad.mit.edu	37	4	110697644	110697644	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIC2	26511	broad.mit.edu	37	4	54876132	54876132	+	3'UTR	DEL	C	-	-	rs68107873		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85166403	85166403	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST10	9486	broad.mit.edu	37	2	101015860	101015860	+	Intron	SNP	C	A	A	rs148544854	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN14	23562	broad.mit.edu	37	21	37915266	37915266	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC16A	23274	broad.mit.edu	37	16	11213184	11213184	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLMN	79789	broad.mit.edu	37	14	95657820	95657820	+	3'UTR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	87892992	87892993	+	Intron	INS	-	A	A	rs147588450	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88085689	88085689	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146237603	146237603	+	Intron	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147597043	147597043	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76555321	76555321	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125282032	125282032	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125517969	125517969	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG2	22796	broad.mit.edu	37	1	230783953	230783953	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32162567	32162567	+	Silent	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139641249	139641249	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10108929	10108930	+	Intron	INS	-	AT	AT	rs146616197	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A4P2	646300	broad.mit.edu	37	3	129931071	129931071	+	5'Flank	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG2	26958	broad.mit.edu	37	7	130292342	130292342	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47620349	47620350	+	Intron	INS	-	A	A	rs144802326		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPM	1368	broad.mit.edu	37	12	69280108	69280108	+	Intron	DEL	C	-	-	rs67261124		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131788772	131788772	+	Intron	DEL	C	-	-	rs35483905		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE8	144402	broad.mit.edu	37	12	39123979	39123979	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207793079	207793079	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREG1	8804	broad.mit.edu	37	1	167517204	167517204	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36687349	36687350	+	Intron	INS	-	T	T	rs148542839	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2855761	2855761	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3265259	3265259	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4470320	4470320	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113727789	113727789	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16970475	16970475	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101740611	101740611	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL12	6387	broad.mit.edu	37	10	44874018	44874018	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4V2	285440	broad.mit.edu	37	4	187129209	187129209	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50282741	50282741	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50854868	50854870	+	Intron	DEL	AAG	-	-	rs35156113		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK2	166614	broad.mit.edu	37	4	151061517	151061517	+	Intron	DEL	A	-	-	rs60163183		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST1	149095	broad.mit.edu	37	1	155020445	155020446	+	Intron	DEL	CA	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117187123	117187123	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137472592	137472592	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41590953	41590953	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC3	729582	broad.mit.edu	37	2	218417260	218417260	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84732670	84732670	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196611769	196611769	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM3	26052	broad.mit.edu	37	1	171998477	171998477	+	Intron	DEL	G	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM3	26052	broad.mit.edu	37	1	172350212	172350213	+	Intron	DEL	CA	-	-	rs5778732		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	128850972	128850972	+	Silent	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	50907148	50907149	+	Intron	INS	-	TT	TT	rs141808824	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111789636	111789638	+	Intron	DEL	AAG	-	-	rs72438942		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37586819	37586819	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116510743	116510743	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	153647681	153647681	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154426456	154426456	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154531383	154531384	+	Intron	INS	-	TCC	TCC	rs79074380		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64020321	64020321	+	Intron	DEL	C	-	-	rs7310030	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	98015413	98015413	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117680619	117680620	+	Intron	DEL	CA	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41516032	41516033	+	Intron	DEL	AT	-	-	rs144684201		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56346986	56346987	+	Intron	DEL	CA	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOX1	53905	broad.mit.edu	37	15	45445725	45445746	+	Intron	DEL	TGTGTGTGTGTGTGTGTGTGTA	-	-	rs72014295		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167068053	167068053	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DVL3	1857	broad.mit.edu	37	3	183885740	183885740	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYM	54808	broad.mit.edu	37	18	46593515	46593515	+	Intron	DEL	G	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95591909	95591910	+	Intron	INS	-	A	A	rs149038526	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECM2	1842	broad.mit.edu	37	9	95270025	95270025	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK3	9451	broad.mit.edu	37	2	88882865	88882865	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR3	84658	broad.mit.edu	37	19	14788109	14788109	+	5'Flank	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132172515	132172515	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L2	2037	broad.mit.edu	37	6	131294686	131294687	+	Intron	INS	-	C	C	rs145182996	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L2	2037	broad.mit.edu	37	6	131310231	131310234	+	Intron	DEL	AAAC	-	-	rs112171986		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX3	79852	broad.mit.edu	37	19	15338904	15338904	+	Silent	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN1	29924	broad.mit.edu	37	19	56203183	56203184	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220145572	220145572	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESCO1	114799	broad.mit.edu	37	18	19153748	19153748	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESR1	2099	broad.mit.edu	37	6	152364594	152364594	+	Intron	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETNK2	55224	broad.mit.edu	37	1	204103819	204103819	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133015235	133015235	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133702329	133702329	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133704600	133704600	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6	54536	broad.mit.edu	37	10	94757159	94757159	+	Intron	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	64658386	64658386	+	Intron	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66104630	66104630	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM3	9214	broad.mit.edu	37	1	207097707	207097708	+	5'Flank	INS	-	GT	GT			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120B	84498	broad.mit.edu	37	6	170627589	170627590	+	In_Frame_Ins	INS	-	CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC	CTGAACCCAGGCAAGAAGTTCCCACGTGTTCAGACC	rs137929046		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139373748	139373748	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM157A	728262	broad.mit.edu	37	3	197922474	197922474	+	Intron	SNP	G	T	T	rs142029240	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM163A	148753	broad.mit.edu	37	1	179739938	179739938	+	Intron	DEL	A	-	-	rs112241309		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45489537	45489537	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62305435	62305435	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62623339	62623339	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12405756	12405756	+	Intron	SNP	A	C	C	rs149228499	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12423140	12423140	+	Intron	SNP	C	T	T	rs149789338		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12423160	12423160	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM72A	729533	broad.mit.edu	37	1	206153919	206153919	+	Intron	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM82B	51115	broad.mit.edu	37	8	87494045	87494045	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM90A1	55138	broad.mit.edu	37	12	8380429	8380429	+	5'Flank	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCL	55120	broad.mit.edu	37	2	58431198	58431198	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	99091193	99091193	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187584467	187584467	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92121513	92121513	+	Intron	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126241042	126241042	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8183498	8183499	+	Intron	INS	-	AC	AC	rs141431028	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO34	55030	broad.mit.edu	37	14	55825342	55825343	+	Intron	DEL	CT	-	-	rs33970553		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL6	343413	broad.mit.edu	37	1	159783447	159783447	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	59851393	59851393	+	Intron	DEL	T	-	-	rs34877048		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP10	60681	broad.mit.edu	37	17	39975858	39975858	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ36000	284124	broad.mit.edu	37	17	21903196	21903196	+	5'Flank	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89081798	89081798	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNTB	2342	broad.mit.edu	37	14	65418458	65418458	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49175441	49175441	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29609403	29609403	+	5'Flank	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29632921	29632921	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29651067	29651070	+	Intron	DEL	ATTT	-	-	rs113518453		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	14416888	14416897	+	Intron	DEL	GAAAGGGAAA	-	-	rs11277364	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32776799	32776799	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD2	123722	broad.mit.edu	37	15	83434003	83434003	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17472550	17472550	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47213287	47213287	+	Intron	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16077196	16077196	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L2	246176	broad.mit.edu	37	17	34079395	34079396	+	Intron	INS	-	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22749503	22749503	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBE1	2632	broad.mit.edu	37	3	81541828	81541829	+	Intron	INS	-	TTCTCCCT	TTCTCCCT	rs149554537	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBE1	2632	broad.mit.edu	37	3	81541861	81541868	+	Intron	DEL	TTCCTTCC	-	-	rs67220037		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89649805	89649805	+	3'UTR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89729400	89729400	+	Intron	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS1	148979	broad.mit.edu	37	1	54001460	54001460	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRX3	10539	broad.mit.edu	37	10	131958235	131958235	+	Intron	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMCL1	64395	broad.mit.edu	37	2	70105740	70105740	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57430212	57430212	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133361374	133361375	+	Intron	DEL	AT	-	-	rs138464460		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8DP	100132979	broad.mit.edu	37	15	22709877	22709877	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	93387795	93387795	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPHN	10243	broad.mit.edu	37	14	67243965	67243965	+	Intron	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR113	165082	broad.mit.edu	37	2	26535144	26535145	+	Intron	INS	-	G	G	rs143473765	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100330087	100330088	+	Intron	INS	-	TTTCCTTC	TTTCCTTC	rs71981038		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR174	84636	broad.mit.edu	37	X	78426400	78426400	+	5'Flank	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAP2	9402	broad.mit.edu	37	22	40343683	40343683	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87753649	87753651	+	Intron	DEL	GAT	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102498678	102498678	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120479733	120479733	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	6982717	6982717	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126353856	126353856	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126690594	126690594	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27871613	27871613	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27874433	27874433	+	Intron	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM3	2947	broad.mit.edu	37	1	110280566	110280566	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1C	9626	broad.mit.edu	37	3	108634376	108634376	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR1	26762	broad.mit.edu	37	5	156476003	156476003	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18217594	18217595	+	Intron	INS	-	T	T	rs142064723	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58147229	58147230	+	Intron	DEL	AC	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECA	51696	broad.mit.edu	37	6	139484840	139484840	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEY2	23493	broad.mit.edu	37	6	126073183	126073183	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGSNAT	138050	broad.mit.edu	37	8	43050809	43050814	+	Intron	DEL	GAGGGT	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100123140	100123141	+	Intron	INS	-	A	A	rs34186861		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AG	8969	broad.mit.edu	37	6	27100766	27100766	+	5'Flank	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BF	440689	broad.mit.edu	37	1	149783693	149783693	+	Silent	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGA2	8091	broad.mit.edu	37	12	66357093	66357093	+	3'UTR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPR	3250	broad.mit.edu	37	16	72100388	72100388	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNBP3	146713	broad.mit.edu	37	17	77328433	77328435	+	Intron	DEL	GGT	-	-	rs10523076		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25730853	25730853	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25869220	25869221	+	Intron	INS	-	CTTC	CTTC	rs72453395		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1B	3351	broad.mit.edu	37	6	78172846	78172846	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA1	5654	broad.mit.edu	37	10	124271531	124271531	+	Silent	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IER3IP1	51124	broad.mit.edu	37	18	44683710	44683710	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFN1	91156	broad.mit.edu	37	1	201197372	201197372	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX1	79192	broad.mit.edu	37	5	3599657	3599657	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB6	3694	broad.mit.edu	37	2	161052671	161052671	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26877673	26877673	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2A	2648	broad.mit.edu	37	17	40270103	40270104	+	Intron	INS	-	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211017356	211017356	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19554673	19554673	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB2	10242	broad.mit.edu	37	3	178419867	178419867	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ3	3786	broad.mit.edu	37	8	133469341	133469342	+	Intron	DEL	GG	-	-	rs34549689		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73557255	73557256	+	Intron	INS	-	T	T	rs149066572	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	7131083	7131083	+	Intron	DEL	G	-	-	rs79176449		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43881758	43881758	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57131568	57131573	+	Intron	DEL	GGGTGT	-	-	rs73817456		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1644	85352	broad.mit.edu	37	22	44702278	44702278	+	Intron	SNP	G	C	C	rs75952948	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1841	84542	broad.mit.edu	37	2	61361050	61361050	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF18A	81930	broad.mit.edu	37	11	28113095	28113095	+	Intron	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF18A	81930	broad.mit.edu	37	11	28122108	28122109	+	Intron	INS	-	G	G	rs148793396	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57961445	57961445	+	Intron	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158025752	158025752	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF12	11278	broad.mit.edu	37	13	74476367	74476367	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL24	54800	broad.mit.edu	37	3	183369446	183369446	+	Intron	DEL	A	-	-	rs77151438		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL25	64410	broad.mit.edu	37	15	86312638	86312638	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL29	114818	broad.mit.edu	37	2	23907533	23907535	+	Intron	DEL	CTC	-	-	rs66787697		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT8	3856	broad.mit.edu	37	12	53312026	53312026	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130389708	130389708	+	Intron	DEL	A	-	-	rs67334159		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129254376	129254377	+	Intron	DEL	TG	-	-	rs67934141		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129278747	129278748	+	Intron	INS	-	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129374681	129374682	+	Intron	INS	-	AAGG	AAGG	rs150991457	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB2	3913	broad.mit.edu	37	3	49163968	49163968	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183174937	183174938	+	Intron	INS	-	GT	GT	rs142609635	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP7	51574	broad.mit.edu	37	4	113578472	113578472	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBR	3930	broad.mit.edu	37	1	225596863	225596864	+	Intron	INS	-	AT	AT	rs148029475	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCLAT1	253558	broad.mit.edu	37	2	30723950	30723951	+	Intron	INS	-	TGTA	TGTA	rs143701990	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16582332	16582332	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55179557	55179557	+	3'UTR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMCH1	22998	broad.mit.edu	37	4	41420437	41420437	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN28B	389421	broad.mit.edu	37	6	105501922	105501925	+	Intron	DEL	TGTT	-	-	rs141591930		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN7A	8825	broad.mit.edu	37	12	81274554	81274555	+	Intron	DEL	AT	-	-	rs71094995		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	28004900	28004900	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100128554	100128554	broad.mit.edu	37	12	126948279	126948279	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100302640	100302640	broad.mit.edu	37	3	106701625	106701626	+	Intron	INS	-	GTGT	GTGT	rs149627634	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC145820	145820	broad.mit.edu	37	15	96047303	96047304	+	Intron	INS	-	T	T	rs147636424	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC400804	400804	broad.mit.edu	37	1	221509682	221509683	+	5'Flank	INS	-	T	T	rs150269501		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647946	647946	broad.mit.edu	37	18	37381579	37381581	+	5'Flank	DEL	ATA	-	-	rs145145250	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653786	653786	broad.mit.edu	37	16	22586815	22586815	+	Intron	SNP	C	G	G	rs147290273	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91805951	91805951	+	RNA	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91814973	91814973	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91818973	91818973	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91819976	91819976	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727677	727677	broad.mit.edu	37	8	128461896	128461896	+	Intron	DEL	A	-	-	rs10719294		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23025074	23025075	+	Intron	DEL	TG	-	-	rs148688762		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40530567	40530570	+	Intron	DEL	CACT	-	-	rs112751953		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42288024	42288024	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT1	26103	broad.mit.edu	37	10	86001143	86001144	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141819712	141819712	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	142238161	142238161	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	41300373	41300374	+	Intron	INS	-	G	G	rs112196494	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70161227	70161227	+	Intron	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC8C	84230	broad.mit.edu	37	1	90179646	90179647	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRFIP2	9209	broad.mit.edu	37	3	37134515	37134515	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33568261	33568261	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTK	4058	broad.mit.edu	37	15	41796728	41796728	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	15928088	15928088	+	Intron	DEL	A	-	-	rs11302561		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1B1	11253	broad.mit.edu	37	9	139997282	139997285	+	Intron	DEL	ACAC	-	-	rs71835567		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K3	4215	broad.mit.edu	37	17	61710219	61710219	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16095592	16095607	+	Intron	DEL	AGGGAGGGAGGGAGGG	-	-	rs60755515		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC2R	4158	broad.mit.edu	37	18	13884822	13884822	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L2	23101	broad.mit.edu	37	3	182925220	182925220	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME3	10873	broad.mit.edu	37	11	86218540	86218541	+	Intron	INS	-	A	A	rs145180078	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	169097308	169097309	+	Intron	INS	-	AG	AG	rs151139977	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT5D1	196074	broad.mit.edu	37	11	28220529	28220530	+	Intron	INS	-	T	T	rs112213168		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141796308	141796308	+	Intron	SNP	A	G	G	rs139455340	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC42105	167359	broad.mit.edu	37	5	43213383	43213387	+	Intron	DEL	TTTCC	-	-	rs141778896	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR296	407022	broad.mit.edu	37	20	57392733	57392733	+	RNA	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151937557	151937557	+	Intron	SNP	G	A	A	rs111989827	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	152106898	152106898	+	Intron	DEL	A	-	-	rs10707629		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP7	143098	broad.mit.edu	37	10	28430562	28430562	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRAP2	112609	broad.mit.edu	37	6	84791539	84791540	+	Intron	INS	-	AATG	AATG	rs111440830		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS22	56945	broad.mit.edu	37	3	139064280	139064281	+	Intron	INS	-	T	T	rs76525911		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI2	124540	broad.mit.edu	37	17	55481290	55481291	+	Intron	INS	-	TG	TG	rs146179814	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1P2	11209	broad.mit.edu	37	1	16975064	16975064	+	RNA	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151363066	151363066	+	Intron	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9008843	9008844	+	Intron	INS	-	A	A	rs112867664		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL10	93408	broad.mit.edu	37	7	101265345	101265346	+	Intron	INS	-	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16797100	16797101	+	Intron	INS	-	AAC	AAC	rs138141956	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26453066	26453072	+	Intron	DEL	AGTGAAG	-	-	rs11278135		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17314016	17314016	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP3	23138	broad.mit.edu	37	5	177548655	177548655	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAIF1	203245	broad.mit.edu	37	9	130829113	130829113	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARS2	79731	broad.mit.edu	37	11	78154811	78154811	+	Intron	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NASP	4678	broad.mit.edu	37	1	46067805	46067805	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78368454	78368454	+	Intron	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145300869	145300869	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145313112	145313113	+	Intron	DEL	CT	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16891791	16891791	+	Intron	SNP	T	C	C	rs3868820		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16908347	16908347	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145205769	145205769	+	Intron	SNP	C	T	T	rs74957786		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22698651	22698651	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCEH1	57552	broad.mit.edu	37	3	172355678	172355679	+	Intron	INS	-	A	A	rs113338933		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	118979750	118979750	+	Intron	SNP	G	C	C	rs71593977		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK7	140609	broad.mit.edu	37	1	198248219	198248219	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21373603	21373603	+	Intron	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29598388	29598389	+	Intron	INS	-	T	T	rs146852924	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFAT5	10725	broad.mit.edu	37	16	69728984	69728984	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25442010	25442010	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124216344	124216345	+	Intron	DEL	AC	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173502795	173502798	+	Intron	DEL	ATAT	-	-	rs66612386		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173653425	173653426	+	Intron	INS	-	TT	TT	rs149129049		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153659434	153659434	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34711109	34711109	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34775047	34775049	+	Intron	DEL	CCT	-	-	rs75965647		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34899250	34899250	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	83666658	83666658	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16399106	16399106	+	Intron	DEL	A	-	-	rs67981570		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131847029	131847029	+	Intron	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTN1	9423	broad.mit.edu	37	17	9046797	9046798	+	Intron	INS	-	T	T	rs142653551	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP37	79023	broad.mit.edu	37	12	102493234	102493235	+	Intron	DEL	AC	-	-	rs3841628		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OASL	8638	broad.mit.edu	37	12	121465643	121465644	+	Intron	DEL	AG	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBFC2A	64859	broad.mit.edu	37	2	192546676	192546676	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF1	4956	broad.mit.edu	37	8	103572984	103572992	+	In_Frame_Del	DEL	TGCAGCCCC	-	-	rs72175040	byFrequency;by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167576354	167576354	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132625533	132625533	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORAOV1	220064	broad.mit.edu	37	11	69482169	69482169	+	3'UTR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORM1	5004	broad.mit.edu	37	9	117086459	117086459	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24981905	24981905	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26695491	26695491	+	Silent	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31984889	31984890	+	Intron	INS	-	T	T	rs147337917	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	32145083	32145083	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9770729	9770729	+	Intron	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM	5064	broad.mit.edu	37	19	726057	726057	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176762884	176762884	+	Intron	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR5	54852	broad.mit.edu	37	15	69676758	69676758	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR5	54852	broad.mit.edu	37	15	69692614	69692614	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATZ1	23598	broad.mit.edu	37	22	31731629	31731629	+	Intron	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAWR	5074	broad.mit.edu	37	12	80015077	80015077	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP3	54039	broad.mit.edu	37	21	47344951	47344951	+	Intron	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	66916066	66916066	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB18	54660	broad.mit.edu	37	5	140615908	140615908	+	Silent	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF5	84333	broad.mit.edu	37	10	92954745	92954745	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47851553	47851553	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233224940	233224940	+	Intron	DEL	A	-	-	rs35772907		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78799303	78799304	+	Intron	INS	-	A	A	rs141402962	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCL2	132954	broad.mit.edu	37	4	56448421	56448421	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	32063361	32063361	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	32099960	32099960	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	32288926	32288926	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4A	5141	broad.mit.edu	37	19	10556521	10556521	+	Intron	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66736464	66736464	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66736492	66736492	+	Intron	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144994160	144994160	+	Intron	DEL	C	-	-	rs57198963		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE5A	8654	broad.mit.edu	37	4	120498726	120498727	+	Intron	DNP	AC	GA	GA			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFD	80310	broad.mit.edu	37	11	103780566	103780566	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFD	80310	broad.mit.edu	37	11	103784748	103784748	+	Intron	DEL	A	-	-	rs35478021		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFD	80310	broad.mit.edu	37	11	103961025	103961025	+	Intron	DEL	G	-	-	rs60729269		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39953216	39953217	+	Intron	INS	-	A	A	rs144429066	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41747939	41747939	+	Intron	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEBP4	157310	broad.mit.edu	37	8	22770891	22770891	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP3	114771	broad.mit.edu	37	1	153285078	153285079	+	5'Flank	INS	-	ACACAC	ACACAC	rs144498805	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100908564	100908564	+	3'UTR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11022138	11022138	+	Silent	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98357050	98357050	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2A	5305	broad.mit.edu	37	10	22898632	22898632	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2A	5305	broad.mit.edu	37	10	22965036	22965037	+	Intron	INS	-	T	T	rs144116934	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1A	8394	broad.mit.edu	37	1	151220894	151220895	+	3'UTR	DEL	AG	-	-	rs142834474		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKIB	5570	broad.mit.edu	37	6	122999036	122999039	+	Intron	DEL	CTTT	-	-	rs7752574	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242463754	242463769	+	Intron	DEL	AAGAAAGAAAGAAAGA	-	-	rs112718417		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144991968	144991968	+	Silent	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG7	440107	broad.mit.edu	37	12	93131534	93131535	+	Intron	INS	-	G	G	rs138893118		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD3	8985	broad.mit.edu	37	7	100855926	100855927	+	Frame_Shift_Ins	INS	-	G	G	rs138002558	byFrequency	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20394416	20394419	+	Intron	DEL	GTTC	-	-	rs145281920		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131895890	131895890	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133216124	133216125	+	Intron	INS	-	CCCTCAACACAA	CCCTCAACACAA	rs146016322	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	131976592	131976592	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39364104	39364104	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARA	5465	broad.mit.edu	37	22	46616085	46616085	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPHLN1	51535	broad.mit.edu	37	12	42729668	42729669	+	Intron	INS	-	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1H	57460	broad.mit.edu	37	12	63090594	63090595	+	Intron	INS	-	A	A	rs147956482	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160716777	160716777	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1M	132160	broad.mit.edu	37	3	52281236	52281236	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146182944	146182944	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11171563	11171563	+	Intron	DEL	G	-	-	rs112482285		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREP	5550	broad.mit.edu	37	6	105829732	105829732	+	Intron	DEL	A	-	-	rs60388324		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47293920	47293921	+	Intron	INS	-	G	G	rs148772668	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57271989	57271989	+	Intron	DEL	A	-	-	rs11352941		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57284785	57284786	+	Intron	INS	-	T	T	rs11442279		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57306787	57306788	+	Intron	INS	-	A	A	rs146073138	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57398118	57398119	+	Intron	INS	-	T	T	rs147643173		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57440798	57440799	+	Intron	INS	-	A	A	rs146617443		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57454089	57454089	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57505054	57505054	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	23945223	23945224	+	Intron	INS	-	CCAT	CCAT			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCQ	5588	broad.mit.edu	37	10	6544045	6544045	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43285277	43285277	+	Intron	SNP	C	T	T	rs148450853	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA8	143471	broad.mit.edu	37	18	23758994	23758994	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD12	5718	broad.mit.edu	37	17	65338954	65338955	+	Intron	INS	-	G	G	rs139621829	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME4	23198	broad.mit.edu	37	2	54163869	54163870	+	Intron	INS	-	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH2	8643	broad.mit.edu	37	1	45298037	45298038	+	Intron	INS	-	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198681524	198681524	+	Intron	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	8215543	8215543	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157834968	157834968	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71090082	71090083	+	Intron	DEL	CT	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40722998	40722998	+	Intron	DEL	T	-	-	rs5841447		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVALB	5816	broad.mit.edu	37	22	37212087	37212088	+	Intron	DEL	TT	-	-	rs111360103		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXK	54899	broad.mit.edu	37	3	58402325	58402327	+	Intron	DEL	AGG	-	-	rs151217600		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGL	5836	broad.mit.edu	37	14	51379667	51379667	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1	5896	broad.mit.edu	37	11	36611206	36611206	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178790727	178790728	+	Intron	INS	-	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARB	5915	broad.mit.edu	37	3	25586040	25586040	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48389204	48389204	+	Silent	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCL1	10171	broad.mit.edu	37	9	4853794	4853794	+	Intron	DEL	T	-	-	rs74993333		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43601824	43601824	+	Missense_Mutation	SNP	G	A	A	rs36008607		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS20	8601	broad.mit.edu	37	8	54764338	54764338	+	5'Flank	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGSL1	353299	broad.mit.edu	37	1	182440674	182440674	+	Intron	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72710253	72710253	+	Intron	DEL	G	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104558030	104558033	+	Intron	DEL	GATC	-	-	rs143436675		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF152	220441	broad.mit.edu	37	18	59506015	59506015	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74221685	74221686	+	Intron	INS	-	TCTT	TCTT	rs148951821	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF43	54894	broad.mit.edu	37	17	56435501	56435502	+	Frame_Shift_Ins	INS	-	G	G	rs144487242	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNFT1	51136	broad.mit.edu	37	17	58030552	58030552	+	Intron	DEL	T	-	-	rs111894176		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNLS	55328	broad.mit.edu	37	10	89894308	89894309	+	Intron	INS	-	T	T	rs74916537	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94404807	94404807	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77169179	77169179	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213369005	213369005	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC1	51319	broad.mit.edu	37	3	158077663	158077663	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RWDD2A	112611	broad.mit.edu	37	6	83905766	83905766	+	Silent	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38932943	38932943	+	Intron	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39008211	39008212	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237759120	237759120	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAE1	10055	broad.mit.edu	37	19	47658155	47658155	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD12	401474	broad.mit.edu	37	8	119512247	119512247	+	Intron	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	158969410	158969411	+	Intron	INS	-	AT	AT	rs149413911	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38596259	38596259	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	3392813	3392814	+	Intron	INS	-	T	T	rs145606589	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169566526	169566526	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3E	9723	broad.mit.edu	37	7	83023519	83023519	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERGEF	26297	broad.mit.edu	37	11	17822437	17822437	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB8	5271	broad.mit.edu	37	18	61647383	61647383	+	Intron	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26612636	26612641	+	Intron	DEL	AAAAGA	-	-	rs78054692		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26709561	26709570	+	Intron	DEL	CACACACACG	-	-	rs150855077	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	156087503	156087503	+	Intron	SNP	G	A	A	rs140991540	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGMS1	259230	broad.mit.edu	37	10	52310443	52310443	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13318059	13318059	+	Intron	SNP	G	A	A	rs114234317	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIL1	64374	broad.mit.edu	37	5	138473752	138473752	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	42923283	42923283	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43206849	43206849	+	Intron	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A10	117247	broad.mit.edu	37	6	111529912	111529913	+	Intron	DEL	TC	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95913129	95913129	+	Intron	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128368846	128368846	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F3	148641	broad.mit.edu	37	1	234076116	234076117	+	Intron	DEL	AG	-	-	rs146219117		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A11	201266	broad.mit.edu	37	17	70739381	70739383	+	Intron	DEL	CCC	-	-	rs57242704		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75757373	75757373	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	76019569	76019571	+	Intron	DEL	AGG	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170292786	170292786	+	Intron	DEL	A	-	-	rs5854380		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143543281	143543281	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21168507	21168507	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21235691	21235696	+	Intron	DEL	TGTGTG	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN12	55106	broad.mit.edu	37	17	33761419	33761419	+	5'Flank	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD3	4088	broad.mit.edu	37	15	67397850	67397850	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG5	23381	broad.mit.edu	37	1	156245518	156245519	+	Intron	INS	-	T	T	rs148217920	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD4	55627	broad.mit.edu	37	2	130913574	130913574	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-18	100033430	broad.mit.edu	37	15	25330355	25330355	+	5'Flank	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1133358	1133358	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1292418	1292421	+	Intron	DEL	ATAC	-	-	rs80159878		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOBP	55084	broad.mit.edu	37	6	107956788	107956788	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106464719	106464719	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106769859	106769859	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106897413	106897413	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF1	25876	broad.mit.edu	37	20	3761598	3761599	+	Intron	INS	-	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220336998	220336998	+	Silent	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167877371	167877372	+	Intron	INS	-	AC	AC	rs142378645	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR3	6707	broad.mit.edu	37	1	152975806	152975829	+	In_Frame_Del	DEL	CCAGGCTACACCAAGGTCCCTGAA	-	-	rs72704847	byFrequency;by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD3	84926	broad.mit.edu	37	12	53470826	53470826	+	Intron	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41062903	41062903	+	Intron	DEL	C	-	-	rs34510741		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCIN1	80725	broad.mit.edu	37	17	36723122	36723122	+	Intron	SNP	C	T	T	rs71138633		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9181824	9181825	+	Intron	INS	-	AT	AT	rs140660996	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP54	6729	broad.mit.edu	37	14	35470215	35470215	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP9	6726	broad.mit.edu	37	1	225963591	225963592	+	5'Flank	DEL	GT	-	-	rs139640255		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSC5D	284297	broad.mit.edu	37	19	56012463	56012463	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53197332	53197332	+	Intron	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA2	8128	broad.mit.edu	37	15	92979287	92979289	+	Intron	DEL	TCT	-	-	rs113451001		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT1	6772	broad.mit.edu	37	2	191843736	191843736	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23836558	23836558	+	Intron	DEL	A	-	-	rs148242178		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP4	252983	broad.mit.edu	37	17	53108420	53108420	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUCLG2	8801	broad.mit.edu	37	3	67611190	67611190	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUGT1P1	441394	broad.mit.edu	37	9	33407385	33407386	+	Intron	DEL	GT	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT4A1	25830	broad.mit.edu	37	22	44221565	44221566	+	3'UTR	INS	-	AATA	AATA	rs142895208	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4338147	4338148	+	Intron	INS	-	A	A	rs141964700	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48034392	48034393	+	Intron	INS	-	GTG	GTG	rs141709193	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR1	6869	broad.mit.edu	37	2	75405662	75405663	+	Intron	INS	-	A	A	rs147479589	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR2	6865	broad.mit.edu	37	10	71174637	71174638	+	Intron	DEL	AC	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TASP1	55617	broad.mit.edu	37	20	13468244	13468244	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D22A	25771	broad.mit.edu	37	22	47315631	47315632	+	Intron	INS	-	TC	TC	rs10694180		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	100030628	100030629	+	Intron	INS	-	T	T	rs143827885	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3	729873	broad.mit.edu	37	17	36359092	36359092	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET2	54790	broad.mit.edu	37	4	106196707	106196707	+	Silent	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX9	374618	broad.mit.edu	37	15	56685676	56685676	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRB	7068	broad.mit.edu	37	3	24310879	24310882	+	Intron	DEL	CGCG	-	-	rs10575859		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32526433	32526433	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMELESS	8914	broad.mit.edu	37	12	56815001	56815002	+	Intron	INS	-	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIPIN	54962	broad.mit.edu	37	15	66644551	66644551	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35711745	35711745	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC5	79838	broad.mit.edu	37	16	19502034	19502053	+	Intron	DEL	TTCCTTCCTTCCTTCCTTCC	-	-	rs71887982		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM126B	55863	broad.mit.edu	37	11	85345351	85345351	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126005088	126005089	+	Intron	INS	-	G	G	rs150855860	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129807792	129807792	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129891199	129891199	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129950304	129950304	+	Intron	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	130160648	130160649	+	Intron	DEL	CA	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM143	55260	broad.mit.edu	37	19	48845652	48845653	+	Intron	INS	-	GGAA	GGAA			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48747521	48747522	+	Intron	INS	-	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS7	344805	broad.mit.edu	37	3	111774564	111774565	+	Intron	INS	-	TT	TT	rs34141477		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF10A	8797	broad.mit.edu	37	8	23064826	23064826	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175674185	175674185	+	Intron	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L2	146691	broad.mit.edu	37	17	17865547	17865547	+	Intron	DEL	A	-	-	rs36095502		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42574443	42574443	+	5'Flank	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX	9760	broad.mit.edu	37	8	59880191	59880191	+	Intron	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP63	8626	broad.mit.edu	37	3	189390411	189390414	+	Intron	DEL	AAGG	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209945394	209945394	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123715106	123715106	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72857899	72857899	+	Intron	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM31	11074	broad.mit.edu	37	6	30072016	30072016	+	Intron	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIOBP	11078	broad.mit.edu	37	22	38111984	38111984	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3424400	3424400	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D2	9819	broad.mit.edu	37	3	150176593	150176593	+	3'UTR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN12	23554	broad.mit.edu	37	7	120433221	120433221	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC39C	125488	broad.mit.edu	37	18	21624017	21624022	+	Intron	DEL	TGTGTG	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179447952	179447952	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBBP5	643224	broad.mit.edu	37	9	141067765	141067765	+	5'Flank	SNP	A	C	C	rs151264990	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP6	85378	broad.mit.edu	37	22	50660053	50660053	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUSC3	7991	broad.mit.edu	37	8	15605968	15605968	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37889102	37889102	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC5	81567	broad.mit.edu	37	6	7927577	7927577	+	Intron	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2E2	7325	broad.mit.edu	37	3	23339135	23339135	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCN3	114131	broad.mit.edu	37	10	5412172	5412172	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41858569	41858570	+	Intron	INS	-	GC	GC			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216465755	216465755	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USHBP1	83878	broad.mit.edu	37	19	17374917	17374917	+	Missense_Mutation	SNP	C	G	G	rs150872948	byFrequency	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP15	9958	broad.mit.edu	37	12	62734423	62734423	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP36	57602	broad.mit.edu	37	17	76799860	76799861	+	Frame_Shift_Ins	INS	-	G	G	rs3088040	byFrequency;by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	106299334	106299334	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	108200904	108200904	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	10870670	10870670	+	IGR	DEL	T	-	-	rs11320156		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	110985806	110985806	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	129556240	129556240	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15997068	15997068	+	IGR	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	16339187	16339188	+	IGR	INS	-	AAGGG	AAGGG	rs146043941	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	17568172	17568172	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19267807	19267808	+	IGR	INS	-	A	A	rs76491289		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	2330859	2330859	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	29241354	29241355	+	IGR	INS	-	A	A	rs142874091	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	29564905	29564905	+	IGR	DEL	T	-	-	rs144744205		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30498435	30498436	+	IGR	INS	-	T	T	rs140101209	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31521670	31521670	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37897881	37897881	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38365290	38365290	+	IGR	SNP	T	C	C	rs141259526	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38893355	38893355	+	IGR	DEL	G	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42614704	42614704	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42649187	42649187	+	IGR	SNP	A	T	T	rs149496692	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52669722	52669722	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	6046625	6046626	+	IGR	INS	-	CTTC	CTTC	rs141051195	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	764279	764279	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	764281	764281	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	7724105	7724108	+	IGR	DEL	GAAA	-	-	rs113940472		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	78368874	78368874	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	87130178	87130178	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	89787851	89787851	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	102601582	102601582	+	IGR	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104162902	104162902	+	IGR	DEL	A	-	-	rs111265892		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	109499712	109499712	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	118163967	118163967	+	IGR	DEL	A	-	-	rs139235617		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121651423	121651423	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131195518	131195519	+	IGR	DEL	CT	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131230683	131230684	+	IGR	INS	-	AT	AT	rs79463893		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	132233577	132233577	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	134614688	134614689	+	IGR	DEL	GA	-	-	rs72426786		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	134643360	134643362	+	IGR	DEL	AAG	-	-	rs10570192		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	14988032	14988032	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15113050	15113050	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15460384	15460384	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	24305140	24305140	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	26010665	26010665	+	IGR	DEL	T	-	-	rs111259516		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	28802675	28802675	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	33380073	33380077	+	IGR	DEL	GTCAT	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	37120469	37120469	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	37603036	37603036	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	37938104	37938104	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39824176	39824177	+	IGR	INS	-	T	T	rs35604472		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	41910638	41910638	+	IGR	DEL	G	-	-	rs66722210		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43083869	43083869	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4364463	4364463	+	IGR	SNP	T	G	G	rs74443636		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49841426	49841426	+	IGR	DEL	A	-	-	rs11314528		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49920207	49920207	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55052093	55052093	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55277577	55277577	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55825648	55825648	+	IGR	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56659413	56659413	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57010101	57010106	+	IGR	DEL	CGCACA	-	-	rs59478887		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	61635649	61635649	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	67507095	67507095	+	IGR	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	7179056	7179056	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	77376822	77376825	+	IGR	DEL	CACA	-	-	rs72301528		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81167152	81167153	+	IGR	INS	-	A	A	rs138470869	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	8300157	8300158	+	IGR	INS	-	T	T	rs145965750	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90383530	90383531	+	IGR	INS	-	G	G	rs139358340	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91054619	91054619	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	95033416	95033416	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	96844725	96844725	+	IGR	DEL	A	-	-	rs145420140		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98436420	98436420	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	104772123	104772124	+	IGR	INS	-	C	C	rs139116455	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108787445	108787445	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	109525981	109525981	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	114656288	114656288	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115727237	115727237	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	118950550	118950551	+	IGR	INS	-	AGAC	AGAC	rs111718447		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	121483351	121483351	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	126199938	126199939	+	IGR	DEL	GT	-	-	rs146360037		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	126801266	126801266	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	126829263	126829266	+	IGR	DEL	AATA	-	-	rs73228936		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128800312	128800312	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	13432293	13432293	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	22991181	22991182	+	IGR	DEL	TT	-	-	rs35583388		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34235959	34235959	+	IGR	DEL	T	-	-	rs111779291		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34469251	34469252	+	IGR	INS	-	T	T	rs149696154	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38511258	38511258	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43431898	43431898	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	48851055	48851057	+	IGR	DEL	TTG	-	-	rs4403839	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	5480896	5480897	+	IGR	INS	-	AC	AC			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55216773	55216773	+	IGR	DEL	G	-	-	rs36111352		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58905046	58905046	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	60391929	60391929	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61693586	61693586	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63004718	63004721	+	IGR	DEL	TGTG	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68448550	68448550	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68813655	68813658	+	IGR	DEL	AATA	-	-	rs36180603		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	69510062	69510062	+	IGR	DEL	C	-	-	rs56687625		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	73444449	73444449	+	IGR	DEL	A	-	-	rs35374378		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	73811276	73811276	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	76531468	76531468	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	81136712	81136712	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	82296018	82296019	+	IGR	INS	-	A	A	rs138361369	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88159620	88159620	+	IGR	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88726086	88726086	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	93978444	93978444	+	IGR	DEL	A	-	-	rs78741312		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	100240683	100240698	+	IGR	DEL	TTCTTTCTTTCCTTCC	-	-	rs12560994	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	27548118	27548118	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	30620859	30620860	+	IGR	INS	-	G	G	rs147570197	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	31341988	31341988	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	33521185	33521185	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	38641234	38641234	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	41601368	41601368	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	47698656	47698656	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55523627	55523627	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59433688	59433688	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61803323	61803323	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79864917	79864917	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	80756833	80756833	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	89852469	89852469	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91818050	91818050	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	97551770	97551770	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20086143	20086143	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20148099	20148099	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	27193075	27193075	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	41985615	41985615	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54141284	54141284	+	IGR	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54704839	54704839	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	76747498	76747499	+	IGR	INS	-	A	A	rs72310033		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82535701	82535702	+	IGR	INS	-	TCCC	TCCC	rs28394171		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	84735093	84735093	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	86265451	86265451	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	86839845	86839845	+	IGR	DEL	G	-	-	rs6650493		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	89380061	89380061	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95516588	95516610	+	IGR	DEL	GGAAGGAAGGAAGGAAAGAAGAA	-	-	rs36211516		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96104150	96104151	+	IGR	INS	-	TCAT	TCAT	rs78332931		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98313976	98313976	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20106544	20106544	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20138077	20138077	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20427490	20427490	+	IGR	SNP	A	G	G	rs113600042		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	24671715	24671715	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	26593027	26593027	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30814118	30814118	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30814120	30814120	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	35035679	35035679	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50051074	50051074	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	82090043	82090043	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	82092353	82092353	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96660958	96660959	+	IGR	INS	-	A	A	rs35790159		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97631802	97631802	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	98551758	98551759	+	IGR	INS	-	TAT	TAT	rs140985199	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	10372572	10372572	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20729290	20729290	+	IGR	SNP	A	G	G	rs145230820	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	22674273	22674273	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26740135	26740135	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32366533	32366533	+	IGR	SNP	G	A	A	rs139256033	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32822382	32822382	+	IGR	SNP	C	T	T	rs138896630	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32833401	32833401	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32851422	32851422	+	IGR	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32851602	32851602	+	IGR	SNP	A	G	G	rs138810340	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33402162	33402162	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	47963621	47963621	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48733061	48733061	+	IGR	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52790425	52790425	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	58973561	58973561	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62136013	62136013	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73499558	73499558	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	7900091	7900092	+	IGR	INS	-	T	T	rs143257929	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	8593443	8593464	+	IGR	DEL	CTTGCGTCATGCAATGGTGCAC	-	-	rs58465368		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	86434014	86434014	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21223981	21223982	+	IGR	INS	-	A	A	rs148144441		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21225034	21225035	+	IGR	INS	-	AG	AG	rs77521218		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21228902	21228902	+	IGR	DEL	A	-	-	rs66723504		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21329284	21329284	+	IGR	DEL	C	-	-	rs67728666		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21554408	21554409	+	IGR	DEL	CA	-	-	rs112964260		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21554509	21554509	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22244774	22244774	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22260242	22260242	+	IGR	SNP	C	T	T	rs62051774	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25273907	25273907	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25279433	25279436	+	IGR	DEL	AGAA	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25286243	25286243	+	IGR	SNP	G	A	A	rs142543436	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25288870	25288872	+	IGR	DEL	AAT	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25304006	25304006	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30003887	30003888	+	IGR	INS	-	CT	CT	rs138358114	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	3468593	3468594	+	IGR	DEL	AC	-	-	rs72228387		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	35008635	35008636	+	IGR	INS	-	T	T	rs146770092	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39063535	39063538	+	IGR	DEL	TTCC	-	-	rs71764584		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	46754509	46754512	+	IGR	DEL	CCTT	-	-	rs143755906		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	50581683	50581684	+	IGR	INS	-	T	T	rs145581966	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51110402	51110403	+	IGR	INS	-	AG	AG	rs149533582	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51282254	51282254	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51835076	51835076	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	53432541	53432542	+	IGR	INS	-	AT	AT	rs140350129	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	66801015	66801016	+	IGR	INS	-	T	T	rs150603264	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	72513303	72513303	+	IGR	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	8564334	8564335	+	IGR	INS	-	TTCC	TTCC			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	1697951	1697952	+	IGR	DEL	CT	-	-	rs112666371		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	32786531	32786531	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	35910625	35910625	+	IGR	DEL	G	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	48628289	48628290	+	IGR	INS	-	T	T	rs150170236	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	5011386	5011389	+	IGR	DEL	ACAG	-	-	rs74893158		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57488510	57488510	+	IGR	DEL	A	-	-	rs74896195		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57684454	57684455	+	IGR	INS	-	T	T	rs112494971		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65773384	65773384	+	IGR	SNP	C	G	G	rs144245179	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	69318288	69318288	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	71264878	71264878	+	IGR	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15712039	15712039	+	IGR	DEL	T	-	-	rs144554029		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22868639	22868639	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29723965	29723966	+	IGR	DEL	TT	-	-	rs35655791		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	30069795	30069796	+	IGR	INS	-	A	A	rs142538886	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	42643105	42643105	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	45742474	45742475	+	IGR	INS	-	T	T	rs34721897		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51152058	51152058	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53108724	53108724	+	IGR	DEL	A	-	-	rs111592292		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	5423788	5423799	+	IGR	DEL	CATCCATCCACT	-	-	rs149758597		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55119486	55119486	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	57101688	57101688	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	6572522	6572522	+	IGR	DEL	G	-	-	rs74174813		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	7429288	7429289	+	IGR	INS	-	AGGC	AGGC	rs11260009	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	8739887	8739887	+	IGR	DEL	G	-	-	rs76062834		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102714308	102714308	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106623822	106623822	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	116082502	116082503	+	IGR	INS	-	GA	GA	rs112557739		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	118847391	118847391	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121483555	121483555	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142544558	142544558	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142545234	142545234	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	14256404	14256404	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142602950	142602950	+	IGR	SNP	G	A	A	rs76007865		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143544037	143544038	+	IGR	DNP	AT	TA	TA			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148872212	148872212	+	IGR	SNP	C	T	T	rs144908800	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	151894871	151894871	+	IGR	DEL	T	-	-	rs112478552		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152520853	152520853	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152713578	152713578	+	IGR	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159246455	159246455	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	161612395	161612395	+	IGR	SNP	A	G	G	rs140222026	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	162979450	162979451	+	IGR	INS	-	CA	CA	rs144617652	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163753485	163753485	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163769555	163769555	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	167185075	167185076	+	IGR	DEL	CA	-	-	rs35342777		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168180006	168180006	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170282381	170282384	+	IGR	DEL	TTAA	-	-	rs5778661		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	171445581	171445584	+	IGR	DEL	GATT	-	-	rs35998858		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175287107	175287107	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189767956	189767988	+	IGR	DEL	AAAAGAAAAGAAAGAAAGGGAAGGAAGGAAGGG	-	-	rs149604754	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191904906	191904906	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	20587817	20587817	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	207183136	207183136	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	210439986	210439987	+	IGR	INS	-	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221630378	221630378	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222255036	222255037	+	IGR	INS	-	C	C	rs148351881	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242789897	242789897	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	244386680	244386683	+	IGR	DEL	TCCT	-	-	rs72765850	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247903005	247903005	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248265062	248265062	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	35050069	35050069	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37688034	37688035	+	IGR	INS	-	ACAA	ACAA	rs149566256	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	64899316	64899316	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	71046083	71046084	+	IGR	DEL	TT	-	-	rs5775017		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	727962	727962	+	IGR	SNP	T	C	C	rs74514030	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	78671070	78671070	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79614229	79614229	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80398695	80398695	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	83205115	83205115	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96062736	96062736	+	IGR	DEL	T	-	-	rs11338871		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	99631834	99631834	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	99957429	99957429	+	IGR	SNP	G	A	A	rs139868361		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	1490266	1490266	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	1504846	1504847	+	IGR	INS	-	G	G	rs139223274	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	17074198	17074198	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	19059136	19059136	+	IGR	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	19136379	19136379	+	IGR	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23683154	23683154	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25898536	25898536	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29428518	29428518	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29599555	29599555	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	40562360	40562360	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	46713852	46713852	+	IGR	DEL	A	-	-	rs113216749		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	46777076	46777078	+	IGR	DEL	CAA	-	-	rs145846236		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	55477493	55477494	+	IGR	INS	-	T	T	rs148942182	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6136318	6136318	+	IGR	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6141619	6141619	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10087747	10087747	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10705891	10705891	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11117232	11117232	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11124128	11124128	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11144779	11144779	+	IGR	SNP	T	C	C	rs1475828		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11146073	11146073	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	18371292	18371292	+	IGR	DEL	A	-	-	rs144762614		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	18795654	18795655	+	IGR	INS	-	T	T	rs147119073	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	26807969	26807969	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	29698502	29698502	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9572919	9572919	+	IGR	SNP	G	A	A	rs149140120	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9660399	9660399	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9848185	9848185	+	IGR	SNP	C	T	T	rs78913844	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17034113	17034113	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	21604874	21604874	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34548531	34548531	+	IGR	DEL	A	-	-	rs67591946		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34696415	34696416	+	IGR	INS	-	TTTCCCTTTCT	TTTCCCTTTCT	rs141239117	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	35145096	35145096	+	IGR	SNP	G	A	A	rs141768494	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103758613	103758613	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103803765	103803765	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103899540	103899540	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118351788	118351788	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118351820	118351820	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	12096277	12096277	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	123530501	123530501	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	12803926	12803926	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132800266	132800266	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133120445	133120445	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14961861	14961861	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162135412	162135413	+	IGR	INS	-	GTCT	GTCT	rs59606723	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162138062	162138062	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162394327	162394327	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	164360281	164360281	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	174432425	174432425	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	182600235	182600235	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186188815	186188815	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186243066	186243066	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	19720133	19720134	+	IGR	INS	-	A	A	rs145937479	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	201078315	201078315	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	211971024	211971025	+	IGR	INS	-	C	C	rs141319954	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217641138	217641138	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	220593094	220593094	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	225219976	225219976	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	237200946	237200946	+	IGR	DEL	T	-	-	rs112406422		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	30632660	30632660	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	31896863	31896863	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	33878348	33878349	+	IGR	INS	-	CTGT	CTGT	rs144537624	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34440450	34440450	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	36216039	36216039	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49718223	49718223	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	53389081	53389088	+	IGR	DEL	TGTGTGTG	-	-	rs139986324		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	53757600	53757600	+	IGR	DEL	G	-	-	rs6720772		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	5501141	5501142	+	IGR	INS	-	AGA	AGA	rs111330381		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	59719442	59719443	+	IGR	DEL	CA	-	-	rs146284862		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6636733	6636733	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	67900197	67900198	+	IGR	DEL	CA	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	76187345	76187346	+	IGR	INS	-	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	77994809	77994809	+	IGR	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81689219	81689219	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83093840	83093841	+	IGR	INS	-	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83156687	83156687	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83309032	83309032	+	IGR	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	84264480	84264481	+	IGR	DEL	AC	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89867310	89867310	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91653495	91653495	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91655043	91655044	+	IGR	DNP	CA	TT	TT	rs112709666	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91660688	91660688	+	IGR	SNP	T	A	A	rs142946006		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91772314	91772315	+	IGR	INS	-	G	G	rs149339381		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91773348	91773348	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91774191	91774191	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91775881	91775881	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91785829	91785829	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91866400	91866400	+	IGR	SNP	G	T	T	rs146281547		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91888436	91888436	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91898052	91898052	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91970883	91970883	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95422338	95422338	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95527986	95527986	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	102561638	102561638	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	1032374	1032377	+	IGR	DEL	ATGG	-	-	rs7618380		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	109333278	109333278	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117467484	117467484	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117930827	117930827	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	133948223	133948223	+	IGR	DEL	G	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	139567308	139567308	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	147766084	147766085	+	IGR	INS	-	T	T	rs141051332	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148705329	148705329	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	154495563	154495563	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	168165847	168165847	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	171683013	171683013	+	IGR	DEL	G	-	-	rs67044172		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	176265545	176265545	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	176513031	176513031	+	IGR	DEL	G	-	-	rs35168732		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	181584845	181584845	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	181886156	181886157	+	IGR	INS	-	TC	TC	rs143501753	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	184310660	184310661	+	IGR	DEL	GT	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	187433193	187433193	+	IGR	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	187598681	187598682	+	IGR	INS	-	A	A	rs147431912	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	191139565	191139565	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192479121	192479122	+	IGR	INS	-	A	A	rs148156604	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192709110	192709110	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	194271142	194271142	+	IGR	DEL	A	-	-	rs63669161		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195443882	195443883	+	IGR	INS	-	ACTGCAGCTGGCACCTGCCCTCCCCACAC	ACTGCAGCTGGCACCTGCCCTCCCCACAC	rs146814517		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	30286069	30286069	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36172312	36172313	+	IGR	INS	-	T	T	rs142876276	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	45389871	45389880	+	IGR	DEL	GTGTGTGTCT	-	-	rs151012732	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	5411840	5411840	+	IGR	DEL	A	-	-	rs67369831		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	64462049	64462049	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	66649493	66649496	+	IGR	DEL	TGTT	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75737209	75737209	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80057927	80057927	+	IGR	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80259329	80259330	+	IGR	INS	-	TTG	TTG	rs139366797	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	83742642	83742643	+	IGR	INS	-	TC	TC			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87963894	87963894	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88345237	88345239	+	IGR	DEL	TGT	-	-	rs71619575		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90457327	90457327	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	99011267	99011267	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	103052314	103052314	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112283438	112283441	+	IGR	DEL	TTTG	-	-	rs139576693		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112380674	112380674	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112472948	112472948	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112711690	112711690	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	114339929	114339929	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	121169208	121169208	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13193025	13193025	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	133150820	133150820	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137532830	137532830	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14185663	14185663	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	145852147	145852147	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	150051938	150051938	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	161547848	161547848	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	16390367	16390367	+	IGR	DEL	A	-	-	rs77858710		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	164187663	164187663	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	177515650	177515650	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182757450	182757450	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190202757	190202757	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190575037	190575037	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	191028216	191028216	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	19834827	19834827	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	20103346	20103346	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	24389165	24389165	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46417740	46417740	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	48073	48073	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49099749	49099753	+	IGR	DEL	TCCGG	-	-	rs60947727		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49261852	49261852	+	IGR	SNP	G	T	T	rs149390697	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49264335	49264335	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49516532	49516532	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49553151	49553151	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	55275314	55275314	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	56952870	56952870	+	IGR	SNP	C	A	A	rs145817320	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63379327	63379327	+	IGR	DEL	G	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	67610137	67610138	+	IGR	INS	-	T	T	rs112834740		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69738958	69738958	+	IGR	DEL	T	-	-	rs34576347		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	71174000	71174000	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	72763286	72763286	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	84124226	84124226	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9570119	9570119	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	100736663	100736664	+	IGR	DEL	TG	-	-	rs71858606		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	100861414	100861414	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	10673196	10673197	+	IGR	DEL	AC	-	-	rs72082130		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	109618472	109618472	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	111455229	111455229	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	120170239	120170239	+	IGR	SNP	G	T	T	rs148813413		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	121047333	121047333	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	123065757	123065757	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12442681	12442681	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	143367155	143367155	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	160542648	160542648	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16263632	16263632	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	166172645	166172645	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	166172654	166172654	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	166471034	166471041	+	IGR	DEL	TAAGGACA	-	-	rs2910053		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173940510	173940510	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174251694	174251694	+	IGR	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	18924177	18924177	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	19004123	19004123	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	19052616	19052616	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	21236793	21236794	+	IGR	INS	-	TA	TA	rs146892463	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23724679	23724679	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23780165	23780168	+	IGR	DEL	ACAC	-	-	rs71927779		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34189539	34189539	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	37885980	37885980	+	IGR	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	3819333	3819333	+	IGR	DEL	T	-	-	rs143447482		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	44265000	44265000	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	45104500	45104500	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	51207293	51207293	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5509563	5509563	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5509565	5509565	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5515009	5515009	+	IGR	SNP	A	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56326866	56326866	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5676996	5676996	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	66563140	66563140	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84289490	84289491	+	IGR	INS	-	GA	GA	rs139906886	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	85223117	85223117	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8579492	8579492	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	9001886	9001886	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	94696517	94696517	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97108059	97108059	+	IGR	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100704222	100704222	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100953047	100953048	+	IGR	INS	-	C	C	rs147924168	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104536131	104536131	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106790928	106790929	+	IGR	INS	-	A	A	rs34105950		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106946586	106946586	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	109649902	109649902	+	IGR	DEL	T	-	-	rs67137848		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	114751806	114751806	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	115349095	115349095	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	116044044	116044045	+	IGR	DEL	AT	-	-	rs111761008		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	120322937	120322937	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	121820594	121820594	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	122698135	122698136	+	IGR	INS	-	A	A	rs145074798	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	123255025	123255026	+	IGR	DEL	CA	-	-	rs142856852		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	12474230	12474230	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	125696394	125696397	+	IGR	DEL	CCTT	-	-	rs142709703	byFrequency	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	131758708	131758708	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	139367689	139367689	+	IGR	DEL	A	-	-	rs67540247		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	139383236	139383251	+	IGR	DEL	AAGGGAGAAAGGAAGC	-	-	rs12665587		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	141099966	141099967	+	IGR	INS	-	AG	AG	rs150373412	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	142827783	142827783	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	143843625	143843626	+	IGR	INS	-	G	G	rs141082089	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	146886943	146886943	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	148357303	148357303	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150779445	150779446	+	IGR	INS	-	TCTA	TCTA	rs138315109	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	153519474	153519475	+	IGR	DEL	TA	-	-	rs148748726	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	164603571	164603571	+	IGR	DEL	T	-	-	rs66780502		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	164799150	164799150	+	IGR	DEL	A	-	-	rs66794889		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	169158662	169158662	+	IGR	DEL	G	-	-	rs112831624		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	19199617	19199617	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27491130	27491131	+	IGR	DEL	TC	-	-	rs71706046	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	30392423	30392424	+	IGR	DEL	AC	-	-	rs10661092		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	30905130	30905130	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	40729361	40729362	+	IGR	DEL	CT	-	-	rs68168043		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	44547810	44547810	+	IGR	DEL	G	-	-	rs36119954		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	47303755	47303755	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48889511	48889511	+	IGR	DEL	A	-	-	rs34514868		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50312754	50312754	+	IGR	DEL	A	-	-	rs34867220		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	51312313	51312314	+	IGR	INS	-	AC	AC	rs141901643	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57141761	57141762	+	IGR	INS	-	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57513747	57513747	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57563226	57563226	+	IGR	DEL	T	-	-	rs11350954		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57564296	57564296	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57977988	57977988	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58417297	58417297	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	64190504	64190504	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66503901	66503902	+	IGR	INS	-	A	A	rs149102424	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66804813	66804813	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	70294126	70294133	+	IGR	DEL	AAGGAAAG	-	-	rs71967349		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	71352598	71352598	+	IGR	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72280546	72280546	+	IGR	DEL	T	-	-	rs112111042		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72565599	72565600	+	IGR	INS	-	T	T	rs140967855	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	76886832	76886832	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	77557709	77557709	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	77581181	77581181	+	IGR	DEL	T	-	-	rs149472004		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78803896	78803897	+	IGR	INS	-	G	G	rs138651033	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	79217833	79217834	+	IGR	INS	-	T	T	rs146055563	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80057778	80057778	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85089378	85089378	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85798135	85798135	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	91747528	91747528	+	IGR	DEL	A	-	-	rs35469967		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	91759361	91759362	+	IGR	DEL	AG	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93866763	93866764	+	IGR	INS	-	G	G	rs149647530	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	95988176	95988176	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	98989710	98989710	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10683401	10683401	+	IGR	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	117078413	117078413	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12511491	12511491	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136478772	136478772	+	IGR	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	140808416	140808416	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141182535	141182535	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	149598259	149598260	+	IGR	DEL	AG	-	-	rs77977654		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	150300775	150300775	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	15030329	15030329	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	156137708	156137709	+	IGR	DEL	CA	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	156328641	156328642	+	IGR	INS	-	T	T	rs142709885	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	159093250	159093250	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	20869521	20869521	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	24143271	24143271	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	24143865	24143866	+	IGR	DEL	AA	-	-	rs35847694		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	24401470	24401470	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	30270394	30270394	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31203439	31203439	+	IGR	DEL	A	-	-	rs11302816		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	34198830	34198830	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42929115	42929115	+	IGR	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	49207368	49207368	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	51037253	51037253	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52007819	52007819	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53533733	53533733	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54769911	54769911	+	IGR	DEL	C	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56296578	56296578	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61673989	61673989	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61776989	61776989	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61815044	61815044	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61815055	61815055	+	IGR	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61827682	61827682	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67052333	67052333	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67860870	67860871	+	IGR	DEL	AC	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67944171	67944172	+	IGR	DNP	GG	AT	AT			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	79124073	79124073	+	IGR	DEL	A	-	-	rs66723232		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	81199911	81199911	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	91177825	91177826	+	IGR	DEL	TA	-	-	rs144167303		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	94006957	94006957	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	99487152	99487153	+	IGR	INS	-	A	A	rs145435816	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	108590344	108590344	+	IGR	SNP	A	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	110763119	110763120	+	IGR	INS	-	TT	TT	rs149994552	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	114766335	114766335	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	115505532	115505532	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	127915201	127915201	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	128574528	128574529	+	IGR	INS	-	CA	CA	rs141738143	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130580312	130580312	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132437139	132437139	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136113761	136113761	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136831171	136831171	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137778478	137778479	+	IGR	INS	-	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138852405	138852405	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	139034260	139034260	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	143033413	143033413	+	IGR	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	31424183	31424183	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34794790	34794790	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	37188467	37188468	+	IGR	INS	-	CA	CA	rs147600669	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	38493715	38493715	+	IGR	DEL	T	-	-	rs79321239		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	55768532	55768533	+	IGR	DEL	CC	-	-	rs10573058		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	57479736	57479736	+	IGR	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	57833756	57833756	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58440157	58440157	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58440161	58440161	+	IGR	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	60226986	60226986	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61372376	61372376	+	IGR	SNP	C	T	T	rs113438223		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65141886	65141891	+	IGR	DEL	ACACAC	-	-	rs34326557		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70856514	70856514	+	IGR	DEL	T	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	72577843	72577843	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	81202149	81202149	+	IGR	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82691020	82691021	+	IGR	DEL	TT	-	-	rs140381414		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83204341	83204341	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86753952	86753952	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86754057	86754057	+	IGR	DEL	G	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89394647	89394647	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89909982	89909982	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94046934	94046934	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94201477	94201480	+	IGR	DEL	GGAG	-	-	rs2449608		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94271267	94271267	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120298959	120298959	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	121800963	121800963	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	12478735	12478735	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	20042266	20042266	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22553490	22553490	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30444833	30444833	+	IGR	SNP	A	G	G	rs145115126	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31253985	31253985	+	IGR	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66471375	66471375	+	IGR	DEL	G	-	-	rs112936181		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68400050	68400050	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68403263	68403263	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68406810	68406810	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68426353	68426353	+	IGR	DEL	G	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68429819	68429819	+	IGR	SNP	G	C	C	rs76256438	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68470682	68470682	+	IGR	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69056434	69056434	+	IGR	SNP	C	T	T	rs150862594	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69059945	69059945	+	IGR	DEL	G	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	83071980	83071980	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	89263481	89263481	+	IGR	SNP	T	C	C	rs72306035		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	89997236	89997236	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120003397	120003397	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	413066	413069	+	IGR	DEL	TATT	-	-	rs147737769	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63654104	63654104	+	IGR	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	82288118	82288118	+	IGR	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13435690	13435690	+	IGR	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13470994	13470994	+	IGR	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13501659	13501659	+	IGR	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13501727	13501727	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59001016	59001016	+	IGR	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9934860	9934860	+	IGR	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEPH1	79674	broad.mit.edu	37	3	157007825	157007840	+	Intron	DEL	ACACACACACACACAC	-	-	rs72130183		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62312815	62312815	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS36	51028	broad.mit.edu	37	13	53007887	53007887	+	Intron	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSNL1	7447	broad.mit.edu	37	2	17723473	17723474	+	Intron	DEL	TG	-	-	rs34052744		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM2A	222008	broad.mit.edu	37	7	54610544	54610544	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27157983	27157983	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC1	58189	broad.mit.edu	37	16	84348750	84348750	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT8A	7478	broad.mit.edu	37	5	137423338	137423339	+	Intron	INS	-	AA	AA	rs66902804		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78751160	78751160	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	79042788	79042789	+	Intron	DEL	GC	-	-	rs149832665		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC2	54877	broad.mit.edu	37	18	60212014	60212015	+	Intron	DEL	TG	-	-	rs150177822		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72991911	72991911	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767846	77767846	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZHX2	22882	broad.mit.edu	37	8	123921950	123921950	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF292	23036	broad.mit.edu	37	6	87890157	87890157	+	Intron	DEL	C	-	-	rs11329320		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF296	162979	broad.mit.edu	37	19	45575762	45575762	+	Silent	SNP	G	A	A	rs140362077	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF347	84671	broad.mit.edu	37	19	53659548	53659548	+	Intron	DEL	A	-	-	rs35550478		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	22019617	22019618	+	Intron	DEL	TG	-	-	rs3830394		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF430	80264	broad.mit.edu	37	19	21240398	21240398	+	Silent	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	68417	68417	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53219831	53219831	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF687	57592	broad.mit.edu	37	1	151261078	151261079	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF702P	79986	broad.mit.edu	37	19	53482038	53482038	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF720	124411	broad.mit.edu	37	16	31742686	31742686	+	Intron	DEL	T	-	-	rs71375943		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63667719	63667719	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF77	58492	broad.mit.edu	37	19	2939028	2939062	+	Intron	DEL	CCTTACCCAAGGAGGCAGTGAGGGAATGACGCCAT	-	-	rs140348764	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88419731	88419731	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21217055	21217055	+	Silent	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3479557	3479558	+	Intron	INS	-	AA	AA	rs139881557	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127152902	127152902	+	Intron	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	82103543	82103543	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79161277	79161277	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22471813	22471813	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29284966	29284966	+	Intron	SNP	A	C	C	rs139062145	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31973010	31973011	+	5'Flank	INS	-	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20332055	20332055	+	RNA	SNP	T	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	5745392	5745392	+	Intron	DEL	A	-	-			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	117315	117315	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	37671313	37671313	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	61914296	61914296	+	Intron	SNP	A	C	C	rs114435411	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	42989440	42989440	+	Intron	SNP	C	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	1110987	1110988	+	3'UTR	INS	-	C	C	rs138610889	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142639366	142639366	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142787524	142787524	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142792783	142792783	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142963926	142963926	+	Intron	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10462090	10462090	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10549607	10549607	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	145428040	145428040	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	15835784	15835785	+	Intron	INS	-	GG	GG			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	56323143	56323143	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	67396889	67396889	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96608616	96608616	+	Intron	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96616792	96616792	+	Intron	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	159818952	159818952	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	8344882	8344882	+	Intron	SNP	T	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	84709321	84709321	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	871477	871478	+	Intron	INS	-	A	A	rs146730932	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	130859018	130859019	+	Intron	INS	-	ACTG	ACTG	rs150715131	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190820526	190820526	+	Intron	SNP	C	A	A	rs148358309	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190821852	190821852	+	Intron	SNP	T	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	80412985	80412985	+	5'Flank	SNP	G	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	21744991	21744991	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	98859846	98859846	+	5'Flank	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	127167782	127167795	+	Intron	DEL	TATGTGTATGTGTG	-	-	rs67545555		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	134098521	134098521	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100607646	100607646	+	Intron	DEL	T	-	-	rs4989163		TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142148756	142148756	+	Intron	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	29754642	29754642	+	5'Flank	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22665425	22665425	+	Intron	SNP	G	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	23549539	23549539	+	Intron	SNP	G	C	C			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66459971	66459971	+	5'Flank	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66460149	66460149	+	5'Flank	SNP	C	T	T			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66465028	66465029	+	Intron	INS	-	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68408173	68408173	+	5'Flank	SNP	A	G	G			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68411090	68411090	+	Intron	SNP	G	T	T	rs148302298	by1000genomes	TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68413332	68413332	+	RNA	SNP	C	A	A			TCGA-17-Z041-01A-01W-0746-08	TCGA-17-Z041-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
