Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7760748	7760748	+	3'UTR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48313592	48313592	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48626907	48626907	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107602736	107602736	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66987234	66987234	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87168572	87168572	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20668260	20668260	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48201239	48201239	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD4	5826	broad.mit.edu	37	14	74759656	74759656	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG2	9429	broad.mit.edu	37	4	89020661	89020661	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35497777	35497777	+	Intron	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35562845	35562845	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109691979	109691979	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD11	84129	broad.mit.edu	37	3	132294556	132294556	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89391316	89391316	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31591526	31591526	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31594258	31594258	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31674073	31674073	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT2	10965	broad.mit.edu	37	14	74035937	74035937	+	5'UTR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM4	341392	broad.mit.edu	37	12	7475905	7475905	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS3	79611	broad.mit.edu	37	12	81537007	81537007	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236914888	236914888	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR2	10097	broad.mit.edu	37	2	65473744	65473744	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156930057	156930057	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM20	8748	broad.mit.edu	37	14	70990727	70990727	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM20	8748	broad.mit.edu	37	14	70991419	70991419	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106478451	106478451	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106824976	106824976	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106926099	106926099	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107095340	107095340	+	RNA	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107095473	107095473	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107178793	107178793	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33624328	33624328	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100692991	100692991	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100821326	100821326	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28296687	28296687	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28337809	28337809	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64747992	64747992	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18905638	18905638	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1569042	1569042	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167839476	167839476	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45724694	45724694	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7626395	7626395	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7626402	7626402	+	Silent	SNP	C	A	A	rs6865872		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7698196	7698196	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131796004	131796004	+	Silent	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131848681	131848681	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADK	132	broad.mit.edu	37	10	76415753	76415753	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADSS	159	broad.mit.edu	37	1	244574782	244574782	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	87967859	87967859	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148044220	148044220	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148059468	148059468	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150841002	150841002	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86697741	86697741	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGT	183	broad.mit.edu	37	1	230846067	230846067	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109670458	109670458	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247063772	247063773	+	Splice_Site	DNP	CT	AA	AA			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSG	197	broad.mit.edu	37	3	186331122	186331122	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106975228	106975228	+	Silent	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK1	203	broad.mit.edu	37	9	130630759	130630759	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP1	8165	broad.mit.edu	37	17	55189100	55189101	+	Intron	DNP	GG	TT	TT	rs141893254	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91712887	91712887	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNAD1	254268	broad.mit.edu	37	1	109394758	109394758	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1D1	6718	broad.mit.edu	37	7	137791985	137791985	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1E2	83592	broad.mit.edu	37	10	4920329	4920329	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A1	216	broad.mit.edu	37	9	75520889	75520889	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58272817	58272817	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH3	221120	broad.mit.edu	37	11	43904536	43904536	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR12	130540	broad.mit.edu	37	2	202211387	202211387	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR12	130540	broad.mit.edu	37	2	202211399	202211399	+	Splice_Site	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALX1	8092	broad.mit.edu	37	12	85677339	85677339	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMBN	258	broad.mit.edu	37	4	71471904	71471904	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMICA1	120425	broad.mit.edu	37	11	118065129	118065129	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOT	154796	broad.mit.edu	37	X	112022251	112022251	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOT	154796	broad.mit.edu	37	X	112054567	112054567	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMZ2P1	201283	broad.mit.edu	37	17	62968593	62968593	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC7	51434	broad.mit.edu	37	12	110815423	110815423	+	Splice_Site	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT1	284	broad.mit.edu	37	8	108276357	108276357	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114262855	114262855	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKH	56172	broad.mit.edu	37	5	14797910	14797910	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95515110	95515110	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS4B	257629	broad.mit.edu	37	16	21261268	21261268	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKZF1	55139	broad.mit.edu	37	2	220100211	220100211	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69256238	69256238	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA6	309	broad.mit.edu	37	5	150484662	150484662	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA6	309	broad.mit.edu	37	5	150505903	150505903	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA8	653145	broad.mit.edu	37	10	47133427	47133427	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36552770	36552770	+	3'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201473888	201473888	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2M1	1173	broad.mit.edu	37	3	183898399	183898399	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83330526	83330526	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3S1	1176	broad.mit.edu	37	5	115205752	115205752	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4B1	10717	broad.mit.edu	37	1	114443808	114443808	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112177307	112177307	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21236176	21236176	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21251056	21251056	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOD	347	broad.mit.edu	37	3	195306015	195306015	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP1	358	broad.mit.edu	37	7	30932244	30932244	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP3	360	broad.mit.edu	37	9	33442825	33442825	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7P1	375719	broad.mit.edu	37	9	67286064	67286064	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35198859	35198859	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141050076	141050076	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24953396	24953396	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24975516	24975516	+	Splice_Site	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119017763	119017763	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119128425	119128425	+	Silent	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119133576	119133576	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130217955	130217955	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156924781	156924781	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC2	84071	broad.mit.edu	37	6	109286055	109286056	+	Intron	DNP	GG	TT	TT			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23321835	23321835	+	Silent	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35730774	35730774	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35750586	35750586	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART1	417	broad.mit.edu	37	11	3680800	3680800	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART4	420	broad.mit.edu	37	12	14994133	14994133	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP2	8853	broad.mit.edu	37	2	9475237	9475237	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASF1B	55723	broad.mit.edu	37	19	14232202	14232202	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119770559	119770559	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119903902	119903902	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119976885	119976886	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120166157	120166157	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124384054	124384054	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG16L1	55054	broad.mit.edu	37	2	234186221	234186221	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATIC	471	broad.mit.edu	37	2	216209659	216209659	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10A	57194	broad.mit.edu	37	15	25981322	25981322	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160059086	160059086	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138811004	138811004	+	3'UTR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138844233	138844233	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138845533	138845533	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119509380	119509380	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B1	490	broad.mit.edu	37	12	89993111	89993111	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0D1	9114	broad.mit.edu	37	16	67487552	67487552	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1E2	90423	broad.mit.edu	37	2	46755760	46755760	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXL	558	broad.mit.edu	37	19	41745202	41745202	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B2M	567	broad.mit.edu	37	15	45007672	45007672	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT1	2583	broad.mit.edu	37	12	58024400	58024400	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT2	124872	broad.mit.edu	37	17	47233984	47233985	+	Intron	DNP	CC	AA	AA			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT4	7918	broad.mit.edu	37	6	31631853	31631854	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165547419	165547419	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129146801	129146801	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129168530	129168530	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEX1	55859	broad.mit.edu	37	X	102318116	102318116	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	33945219	33945219	+	Translation_Start_Site	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	113003248	113003248	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPGM	669	broad.mit.edu	37	7	134346514	134346514	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36959463	36959463	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRPF1	7862	broad.mit.edu	37	3	9781178	9781178	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD2	55643	broad.mit.edu	37	19	1986656	1986656	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTLA	151888	broad.mit.edu	37	3	112190193	112190193	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A3	54718	broad.mit.edu	37	6	26423424	26423424	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUB1B	701	broad.mit.edu	37	15	40494740	40494740	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf82	143379	broad.mit.edu	37	10	118424525	118424525	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76256959	76256959	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76257297	76257297	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf35	55196	broad.mit.edu	37	12	32134159	32134159	+	Silent	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40037789	40037789	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf50	160419	broad.mit.edu	37	12	88376957	88376957	+	Missense_Mutation	SNP	G	T	T	rs141441001		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf65	91574	broad.mit.edu	37	12	123738429	123738429	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf50	145376	broad.mit.edu	37	14	65054036	65054036	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24923002	24923002	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24923440	24923440	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100332327	100332327	+	RNA	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf63	55731	broad.mit.edu	37	17	27085287	27085287	+	3'UTR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf42	79086	broad.mit.edu	37	19	16764924	16764924	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf61	56006	broad.mit.edu	37	19	44247718	44247718	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1GALT1C1	29071	broad.mit.edu	37	X	119760088	119760088	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf101	257044	broad.mit.edu	37	1	244747149	244747149	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf14	81626	broad.mit.edu	37	1	182908311	182908311	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf150	148823	broad.mit.edu	37	1	247737316	247737316	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75037337	75037337	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75042380	75042380	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75055654	75055654	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf74	148304	broad.mit.edu	37	1	209956795	209956795	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf83	127428	broad.mit.edu	37	1	54562174	54562174	+	3'UTR	DEL	G	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf132	140699	broad.mit.edu	37	20	35757453	35757453	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf141	128653	broad.mit.edu	37	20	2795875	2795875	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf15	54094	broad.mit.edu	37	21	15219956	15219956	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27A	29798	broad.mit.edu	37	2	132480128	132480128	+	5'UTR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf65	130951	broad.mit.edu	37	2	74803613	74803613	+	Nonsense_Mutation	SNP	G	T	T	rs138006701	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf89	129293	broad.mit.edu	37	2	85097822	85097822	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf43	255798	broad.mit.edu	37	3	196242059	196242059	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf77	375337	broad.mit.edu	37	3	44285526	44285526	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113524814	113524814	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81582215	81582215	+	Intron	DEL	C	-	-	rs75426200		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf36	132989	broad.mit.edu	37	4	87812707	87812707	+	5'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf41	60684	broad.mit.edu	37	4	184587597	184587597	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf51	646603	broad.mit.edu	37	4	146617823	146617823	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37122447	37122447	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165703510	165703510	+	Silent	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf16	10842	broad.mit.edu	37	7	31735334	31735334	+	Intron	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57373827	57373827	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf46	254778	broad.mit.edu	37	8	67425908	67425908	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf71	169693	broad.mit.edu	37	9	71152258	71152258	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	50198071	50198071	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA5B	11238	broad.mit.edu	37	X	15794885	15794885	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65073500	65073500	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140904434	140904434	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2659868	2659868	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2693607	2693607	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181478967	181478967	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181549889	181549889	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181702006	181702006	+	Silent	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201035340	201035340	+	Intron	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81624260	81624260	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	2022228	2022228	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG5	27091	broad.mit.edu	37	17	64876885	64876885	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86028354	86028354	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134480368	134480368	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	6986602	6986605	+	Intron	DEL	TTCC	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110494829	110494829	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN8	388743	broad.mit.edu	37	1	223814913	223814913	+	Intron	SNP	G	A	A	rs141278806	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPSL	133690	broad.mit.edu	37	5	35919882	35919882	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP10	843	broad.mit.edu	37	2	202073835	202073835	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219869057	219869057	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219892828	219892828	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106130858	106130858	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC158	339965	broad.mit.edu	37	4	77247165	77247165	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC158	339965	broad.mit.edu	37	4	77288616	77288616	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC33	80125	broad.mit.edu	37	15	74574130	74574130	+	Silent	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC33	80125	broad.mit.edu	37	15	74623621	74623621	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC37	348807	broad.mit.edu	37	3	126132862	126132862	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC38	120935	broad.mit.edu	37	12	96310885	96310885	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180381730	180381730	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC68	80323	broad.mit.edu	37	18	52595982	52595982	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC6	8030	broad.mit.edu	37	10	61665930	61665930	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKBR	887	broad.mit.edu	37	11	6292070	6292070	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL3	6348	broad.mit.edu	37	17	34416714	34416714	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7531614	7531614	+	Silent	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7633740	7633740	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200	4345	broad.mit.edu	37	3	112054784	112054784	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35829208	35829208	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35832042	35832042	+	Splice_Site	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300C	10871	broad.mit.edu	37	17	72537795	72537795	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40LG	959	broad.mit.edu	37	X	135732305	135732305	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD86	942	broad.mit.edu	37	3	121828231	121828231	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD96	10225	broad.mit.edu	37	3	111296432	111296432	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD96	10225	broad.mit.edu	37	3	111319568	111319568	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDAN1	146059	broad.mit.edu	37	15	43019893	43019893	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22654228	22654228	+	Intron	SNP	C	A	A	rs147495015	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59221422	59221422	+	Splice_Site	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44935371	44935371	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH24	64403	broad.mit.edu	37	14	23523705	23523705	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25568621	25568621	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25573592	25573592	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61687545	61687545	+	Silent	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202689350	202689351	+	Intron	INS	-	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202698557	202698557	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123165070	123165070	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123165072	123165072	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123216048	123216048	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPJ	55835	broad.mit.edu	37	13	25473749	25473749	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPQ	55166	broad.mit.edu	37	6	49438088	49438088	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP170	9859	broad.mit.edu	37	1	243336059	243336059	+	Silent	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13087592	13087592	+	Silent	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP250	11190	broad.mit.edu	37	20	34055455	34055455	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR1	3078	broad.mit.edu	37	1	196795979	196795979	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD6	84303	broad.mit.edu	37	3	126633505	126633505	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIA	27159	broad.mit.edu	37	1	111861779	111861779	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85212932	85212932	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	240070931	240070931	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	240072267	240072267	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST9	83539	broad.mit.edu	37	18	24665236	24665236	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST9	83539	broad.mit.edu	37	18	24722825	24722825	+	5'UTR	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHUK	1147	broad.mit.edu	37	10	101959779	101959779	+	Splice_Site	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB2	10518	broad.mit.edu	37	15	78416082	78416082	+	Splice_Site	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB4	130106	broad.mit.edu	37	2	26804349	26804349	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143015398	143015398	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143017866	143017866	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143025408	143025408	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154508283	154508283	+	Intron	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154509475	154509475	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154522349	154522349	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC5	53405	broad.mit.edu	37	6	45871009	45871009	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73731800	73731800	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73753320	73753320	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2	1196	broad.mit.edu	37	1	155233108	155233108	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN3	1201	broad.mit.edu	37	16	28499874	28499874	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMKLR1	1240	broad.mit.edu	37	12	108686401	108686401	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMTM5	116173	broad.mit.edu	37	14	23848127	23848127	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87679295	87679295	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21549933	21549933	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTF	1270	broad.mit.edu	37	11	58392013	58392013	+	3'UTR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41330595	41330595	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100126553	100126553	+	Silent	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100207834	100207834	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147384830	147384830	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	148080900	148080900	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG2	22796	broad.mit.edu	37	1	230805069	230805069	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121238815	121238815	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121241027	121241027	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101706290	101706290	+	5'UTR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101818567	101818567	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A1	1277	broad.mit.edu	37	17	48277195	48277195	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94054489	94054489	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139606410	139606410	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86340469	86340469	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109734975	109734975	+	3'UTR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189851776	189851776	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189856414	189856414	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110864722	110864722	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111109666	111109666	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111130465	111130465	+	Silent	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107827692	107827692	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107898793	107898793	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107417577	107417577	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107439492	107439492	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189917425	189917425	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10116529	10116529	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238245034	238245034	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238265934	238265934	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130311878	130311878	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70981386	70981386	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61468464	61468464	+	Silent	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS7B	64708	broad.mit.edu	37	2	232663663	232663663	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS7B	64708	broad.mit.edu	37	2	232665526	232665526	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO6	84940	broad.mit.edu	37	17	27948194	27948194	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPO	130749	broad.mit.edu	37	2	207827200	207827200	+	Silent	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211481282	211481282	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPVL	54504	broad.mit.edu	37	7	29135933	29135933	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR2	1380	broad.mit.edu	37	1	207640346	207640347	+	Intron	DNP	TG	GT	GT			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197404272	197404272	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L4	148327	broad.mit.edu	37	1	153941652	153941652	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43907332	43907332	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP3	10321	broad.mit.edu	37	6	49701087	49701087	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD1	83690	broad.mit.edu	37	8	75898537	75898537	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17201189	17201189	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGN	155051	broad.mit.edu	37	7	151135364	151135364	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSDAP1	440359	broad.mit.edu	37	16	31579819	31579819	+	3'UTR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3253921	3253921	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34164199	34164199	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34174809	34174809	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34190165	34190165	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113241081	113241081	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113277578	113277578	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114110953	114110953	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRNP3	80034	broad.mit.edu	37	2	166535905	166535905	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA1	1495	broad.mit.edu	37	5	138094733	138094733	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11117484	11117484	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16656918	16656918	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101882787	101882787	+	Silent	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWC22	57703	broad.mit.edu	37	2	180857732	180857733	+	Intron	DEL	AC	-	-	rs5836706		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	48996521	48996521	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49034404	49034404	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49039987	49039987	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf48	54967	broad.mit.edu	37	X	134304858	134304858	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22962480	22962480	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22990265	22990265	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11A1	1583	broad.mit.edu	37	15	74637206	74637206	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41383234	41383234	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4V2	285440	broad.mit.edu	37	4	187118127	187118127	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM2	23500	broad.mit.edu	37	6	39841121	39841121	+	Silent	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57769290	57769290	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58988292	58988292	+	Intron	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125686417	125686417	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885672	88885672	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L1	139425	broad.mit.edu	37	X	27998033	27998033	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	49954209	49954209	+	Intron	SNP	C	T	T	rs2960620		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1A	9937	broad.mit.edu	37	10	115612691	115612691	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCN	1634	broad.mit.edu	37	12	91558307	91558307	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN1	1639	broad.mit.edu	37	2	74592428	74592428	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX27	55661	broad.mit.edu	37	20	47839548	47839548	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX47	51202	broad.mit.edu	37	12	12955502	12955503	+	Intron	DNP	GG	TT	TT			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169204672	169204672	+	Silent	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB113	245927	broad.mit.edu	37	6	49936629	49936629	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB126	81623	broad.mit.edu	37	20	126164	126164	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2C	163259	broad.mit.edu	37	1	115144127	115144127	+	Splice_Site	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DES	1674	broad.mit.edu	37	2	220288443	220288443	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNA5	1687	broad.mit.edu	37	7	24758610	24758610	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR14	8220	broad.mit.edu	37	22	19122551	19122551	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX36	170506	broad.mit.edu	37	3	154027551	154027551	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX36	170506	broad.mit.edu	37	3	154042241	154042241	+	5'UTR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH1	1729	broad.mit.edu	37	5	140909776	140909776	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO2	1734	broad.mit.edu	37	14	80668866	80668866	+	3'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2B	57609	broad.mit.edu	37	12	51089567	51089567	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	436004	436004	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3	22894	broad.mit.edu	37	13	73346347	73346347	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKC1	1736	broad.mit.edu	37	X	154003006	154003006	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	108124804	108124804	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLD	1738	broad.mit.edu	37	7	107557322	107557322	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83525859	83525859	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31854905	31854905	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32382752	32382752	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124417973	124417973	+	Missense_Mutation	SNP	C	A	A	rs56219209	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21934524	21934524	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20996653	20996653	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13890975	13890975	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13919512	13919512	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196825392	196825392	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196892698	196892698	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196913077	196913077	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38976746	38976746	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11660891	11660891	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11711311	11711311	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11840566	11840566	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC5B	85479	broad.mit.edu	37	8	67012238	67012238	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC6	9829	broad.mit.edu	37	1	65831473	65831473	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC6	9829	broad.mit.edu	37	1	65845187	65845187	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM1	1759	broad.mit.edu	37	9	130984572	130984572	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM1	1759	broad.mit.edu	37	9	130988183	130988183	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMBP	23268	broad.mit.edu	37	10	101648710	101648710	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTTIP1	116092	broad.mit.edu	37	20	44433786	44433786	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225639791	225639791	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117775175	117775175	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169126444	169126444	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111423968	111423968	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25216655	25216655	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK6	220164	broad.mit.edu	37	18	67508428	67508428	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY1	23033	broad.mit.edu	37	6	83858407	83858407	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37597896	37597896	+	Missense_Mutation	SNP	C	G	G	rs139220161	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF3	8110	broad.mit.edu	37	14	73349479	73349479	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	63974458	63974458	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105456683	105456683	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29037052	29037052	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32408849	32408849	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYM	54808	broad.mit.edu	37	18	46859823	46859823	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLL2	140735	broad.mit.edu	37	17	56166675	56166675	+	3'UTR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYX1C1	161582	broad.mit.edu	37	15	55710312	55710312	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECEL1	9427	broad.mit.edu	37	2	233349303	233349303	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2L	345930	broad.mit.edu	37	6	139197684	139197684	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67914657	67914657	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83362356	83362356	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFS	10278	broad.mit.edu	37	14	23827927	23827927	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110882011	110882011	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGR1	1958	broad.mit.edu	37	5	137803056	137803056	+	Silent	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHHADH	1962	broad.mit.edu	37	3	184910477	184910477	+	Missense_Mutation	SNP	C	A	A	rs151323332		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELF4	2000	broad.mit.edu	37	X	129206057	129206057	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	36909933	36909933	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMD	2010	broad.mit.edu	37	X	153609453	153609453	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMID2	136227	broad.mit.edu	37	7	101200760	101200760	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML1	2009	broad.mit.edu	37	14	100380672	100380672	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR3	84658	broad.mit.edu	37	19	14732404	14732404	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENGASE	64772	broad.mit.edu	37	17	77077087	77077087	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX2	10495	broad.mit.edu	37	X	129799674	129799674	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX2	10495	broad.mit.edu	37	X	129883714	129883714	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX2	10495	broad.mit.edu	37	X	130008612	130008612	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132171233	132171233	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120569976	120569976	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP6	133121	broad.mit.edu	37	4	185033794	185033794	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132466655	132466656	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34783267	34783267	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5419722	5419722	+	Silent	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB42	2038	broad.mit.edu	37	15	43507765	43507765	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38227235	38227235	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66197760	66197760	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66233081	66233081	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15	2060	broad.mit.edu	37	1	51912599	51912599	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L3	79574	broad.mit.edu	37	1	110294630	110294630	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56276245	56276245	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103506168	103506168	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERP44	23071	broad.mit.edu	37	9	102783022	102783022	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPNP	284729	broad.mit.edu	37	1	17029265	17029265	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93113200	93113200	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXD2	55218	broad.mit.edu	37	14	69702849	69702849	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT1	2131	broad.mit.edu	37	8	118874121	118874122	+	Intron	INS	-	A	A	rs141652464	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72229803	72229803	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66013288	66013288	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66115184	66115184	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169525952	169525952	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154089946	154089946	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63409901	63409901	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM131A	131408	broad.mit.edu	37	3	184059277	184059277	+	5'UTR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139153536	139153537	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139158018	139158018	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139255343	139255343	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM164A	51101	broad.mit.edu	37	8	79609676	79609676	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40A	85369	broad.mit.edu	37	1	110594553	110594553	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40B	57464	broad.mit.edu	37	7	129092951	129092951	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM46C	54855	broad.mit.edu	37	1	118166264	118166264	+	Silent	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM46D	169966	broad.mit.edu	37	X	79698089	79698089	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM46D	169966	broad.mit.edu	37	X	79698091	79698091	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM50A	9130	broad.mit.edu	37	X	153677337	153677337	+	Intron	DEL	G	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM59A	64762	broad.mit.edu	37	18	29867048	29867048	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177247574	177247575	+	Intron	DNP	GG	AT	AT			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190195207	190195207	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM70A	55026	broad.mit.edu	37	X	119402040	119402040	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM84A	151354	broad.mit.edu	37	2	14782485	14782485	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCB	2187	broad.mit.edu	37	X	14883644	14883644	+	5'UTR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCL	55120	broad.mit.edu	37	2	58468386	58468386	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187532546	187532546	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92430618	92430618	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN7	129804	broad.mit.edu	37	2	112922668	112922668	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127645783	127645783	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127763130	127763130	+	Intron	DEL	T	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15628494	15628494	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15937230	15937230	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAMR	83953	broad.mit.edu	37	1	207135631	207135631	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR3B	2215	broad.mit.edu	37	1	161595804	161595804	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157494130	157494130	+	Silent	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157512753	157512753	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERMT2	10979	broad.mit.edu	37	14	53326377	53326377	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108387171	108387171	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGA	2243	broad.mit.edu	37	4	155507252	155507252	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF10	2255	broad.mit.edu	37	5	44388335	44388335	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	138190401	138190401	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF1	2246	broad.mit.edu	37	5	141993534	141993534	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR4	2264	broad.mit.edu	37	5	176516639	176516639	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGL2	10875	broad.mit.edu	37	7	76826210	76826210	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGL2	10875	broad.mit.edu	37	7	76826219	76826219	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34081944	34081944	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ10357	55701	broad.mit.edu	37	14	21549279	21549279	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ25363	401082	broad.mit.edu	37	3	109190657	109190657	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128477607	128477607	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128482421	128482421	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128487837	128487838	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28915155	28915155	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240370180	240370180	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216273239	216273239	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79199936	79199936	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79240282	79240282	+	Intron	SNP	G	T	T	rs138032191	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14769798	14769798	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39266239	39266239	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29621707	29621707	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD3	257019	broad.mit.edu	37	9	85912602	85912602	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12739624	12739624	+	3'UTR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44975740	44975740	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN1	6624	broad.mit.edu	37	7	5642887	5642887	+	Splice_Site	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL1	11167	broad.mit.edu	37	3	120122145	120122145	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT9	10690	broad.mit.edu	37	6	96651790	96651790	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT9	10690	broad.mit.edu	37	6	96651918	96651918	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXR1	8087	broad.mit.edu	37	3	180651295	180651295	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39202016	39202016	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39203010	39203010	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYN	2534	broad.mit.edu	37	6	112020718	112020718	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101084360	101084360	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151336643	151336643	+	3'UTR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161116055	161116055	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161118881	161118881	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26825645	26825645	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27725722	27725722	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151818471	151818471	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR2	2570	broad.mit.edu	37	6	90012568	90012568	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT1	2589	broad.mit.edu	37	18	33267090	33267090	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL1	57452	broad.mit.edu	37	14	69805381	69805381	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAPVD1	26130	broad.mit.edu	37	9	128122825	128122825	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89652589	89652589	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF6	392255	broad.mit.edu	37	8	97172676	97172676	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGN	199720	broad.mit.edu	37	19	38877076	38877076	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP1	170575	broad.mit.edu	37	7	150417643	150417643	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA5	2702	broad.mit.edu	37	1	147231431	147231431	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GKN1	56287	broad.mit.edu	37	2	69207144	69207144	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GKN2	200504	broad.mit.edu	37	2	69173488	69173488	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121746735	121746735	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRX5	51218	broad.mit.edu	37	14	96010439	96010439	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D2	23127	broad.mit.edu	37	1	183942746	183942746	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GM2A	2760	broad.mit.edu	37	5	150757808	150757808	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAI1	2770	broad.mit.edu	37	7	79820453	79820453	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAO1	2775	broad.mit.edu	37	16	56374915	56374915	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121414164	121414164	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132439773	132439773	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR101	83550	broad.mit.edu	37	X	136113088	136113088	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR101	83550	broad.mit.edu	37	X	136113576	136113576	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135428013	135428013	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135428501	135428501	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135431946	135431946	+	Silent	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135498719	135498719	+	3'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR61	83873	broad.mit.edu	37	1	110086427	110086427	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR78	27201	broad.mit.edu	37	4	8588829	8588829	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5A	9052	broad.mit.edu	37	12	13063367	13063367	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5B	51704	broad.mit.edu	37	16	19883864	19883864	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD3	65983	broad.mit.edu	37	5	125819143	125819143	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122381510	122381510	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122562114	122562114	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	88042846	88042846	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94376988	94376988	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94436366	94436366	+	Splice_Site	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94690559	94690559	+	Silent	SNP	G	C	C	rs151216204	byFrequency	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102074322	102074322	+	Silent	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102483424	102483424	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK7	131890	broad.mit.edu	37	3	141521685	141521685	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTCD	79807	broad.mit.edu	37	4	106638996	106638996	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM2P1	442245	broad.mit.edu	37	6	111368144	111368144	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C4	9329	broad.mit.edu	37	9	135562528	135562528	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108697122	108697122	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	145035837	145035838	+	Intron	DNP	CC	AA	AA			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZF1	64412	broad.mit.edu	37	20	23345107	23345107	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HACE1	57531	broad.mit.edu	37	6	105232265	105232265	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN1	1404	broad.mit.edu	37	5	82948296	82948296	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN4	404037	broad.mit.edu	37	19	19375753	19375753	+	5'Flank	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR1	3061	broad.mit.edu	37	1	32085306	32085306	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55039696	55039696	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48682734	48682734	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18633739	18633739	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18687614	18687614	+	Silent	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	19015514	19015514	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDLBP	3069	broad.mit.edu	37	2	242192363	242192363	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41009583	41009583	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41065564	41065564	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65427230	65427230	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P2	400322	broad.mit.edu	37	15	23283313	23283313	+	Intron	SNP	C	A	A	rs145817269	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91778956	91778956	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75191462	75191462	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIPK2	28996	broad.mit.edu	37	7	139258034	139258034	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BH	8345	broad.mit.edu	37	6	26251885	26251885	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3E	8353	broad.mit.edu	37	6	26225652	26225652	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143081224	143081224	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176315824	176315824	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-F	3134	broad.mit.edu	37	6	29694052	29694052	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185934884	185934884	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185985050	185985050	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186036967	186036967	+	Silent	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186082028	186082028	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCR	3156	broad.mit.edu	37	5	74654395	74654395	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS1	3157	broad.mit.edu	37	5	43298869	43298869	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGN5	79366	broad.mit.edu	37	X	80438961	80438961	+	Intron	DEL	T	-	-	rs112011773		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGXB4	10042	broad.mit.edu	37	22	35659895	35659895	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMMR	3161	broad.mit.edu	37	5	162898350	162898350	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173525273	173525273	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMSD	284293	broad.mit.edu	37	18	61627615	61627615	+	3'UTR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC4	3221	broad.mit.edu	37	12	54448764	54448764	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPRT1	3251	broad.mit.edu	37	X	133632513	133632513	+	Intron	SNP	A	G	G	rs138936911	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNBP3	146713	broad.mit.edu	37	17	77418969	77418969	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26139401	26139401	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD11B1	3290	broad.mit.edu	37	1	209905757	209905757	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119964340	119964340	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA2	3306	broad.mit.edu	37	14	65002404	65002404	+	5'Flank	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA6	3310	broad.mit.edu	37	1	161495421	161495421	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPB3	8988	broad.mit.edu	37	5	53751613	53751613	+	5'UTR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135582046	135582046	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135594124	135594124	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63256623	63256623	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3C	170572	broad.mit.edu	37	3	183773141	183773141	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR5A	3361	broad.mit.edu	37	7	154862699	154862699	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR7	3363	broad.mit.edu	37	10	92509079	92509079	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL4	23553	broad.mit.edu	37	7	123509015	123509015	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IBSP	3381	broad.mit.edu	37	4	88732481	88732481	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IBSP	3381	broad.mit.edu	37	4	88732483	88732483	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH3A	3419	broad.mit.edu	37	15	78450058	78450058	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNAR1	3454	broad.mit.edu	37	21	34715816	34715816	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65676610	65676610	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160431823	160431823	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160494822	160494822	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118621691	118621691	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130412615	130412615	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF22	283284	broad.mit.edu	37	11	18737215	18737215	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133790155	133790155	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKB	3551	broad.mit.edu	37	8	42172025	42172025	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKB	3551	broad.mit.edu	37	8	42186654	42186654	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF1	10320	broad.mit.edu	37	7	50459442	50459442	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18RAP	8807	broad.mit.edu	37	2	103040985	103040985	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18RAP	8807	broad.mit.edu	37	2	103053705	103053705	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27457475	27457475	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL29	282618	broad.mit.edu	37	19	39785678	39785678	+	5'Flank	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RA	3559	broad.mit.edu	37	10	6068009	6068009	+	Intron	DEL	A	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RG	3561	broad.mit.edu	37	X	70328489	70328489	+	Silent	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31RA	133396	broad.mit.edu	37	5	55164775	55164775	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPDH1	3614	broad.mit.edu	37	7	128035210	128035210	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING3	54556	broad.mit.edu	37	7	120596228	120596228	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING4	51147	broad.mit.edu	37	12	6761907	6761907	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41729364	41729365	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156812172	156812172	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO8	10526	broad.mit.edu	37	12	30792623	30792623	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCF1	132141	broad.mit.edu	37	3	51929313	51929313	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75914496	75914496	+	Intron	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156505057	156505057	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156520175	156520175	+	Intron	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52340915	52340915	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156679719	156679719	+	3'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITLN2	142683	broad.mit.edu	37	1	160914884	160914884	+	3'UTR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITM2A	9452	broad.mit.edu	37	X	78618572	78618572	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147015701	147015701	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123858375	123858375	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124153095	124153095	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124412633	124412633	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2B	8850	broad.mit.edu	37	3	20164180	20164180	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170366651	170366651	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA10	3744	broad.mit.edu	37	1	111060823	111060823	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156009765	156009765	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB3	9196	broad.mit.edu	37	17	7828323	7828323	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	119914579	119914579	+	5'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH3	23416	broad.mit.edu	37	12	49935289	49935289	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63269339	63269340	+	Intron	INS	-	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19436595	19436595	+	Splice_Site	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169812226	169812226	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	21922882	21922883	+	Intron	DNP	TA	AT	AT			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN2	3781	broad.mit.edu	37	5	113831826	113831826	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN4	3783	broad.mit.edu	37	19	44284578	44284578	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ3	3786	broad.mit.edu	37	8	133488491	133488491	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNS3	3790	broad.mit.edu	37	2	18112663	18112663	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD16	57528	broad.mit.edu	37	5	143586460	143586460	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142649499	142649499	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS2	202559	broad.mit.edu	37	6	62757888	62757888	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS3	10656	broad.mit.edu	37	8	136595368	136595368	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0141	9812	broad.mit.edu	37	5	141309655	141309655	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0146	23514	broad.mit.edu	37	8	48676524	48676524	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0226	9711	broad.mit.edu	37	3	197402403	197402403	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319	9856	broad.mit.edu	37	6	24554859	24554859	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42249450	42249450	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0586	9786	broad.mit.edu	37	14	58917366	58917366	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0652	9776	broad.mit.edu	37	11	46680843	46680843	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0754	643314	broad.mit.edu	37	1	39877491	39877491	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0907	22889	broad.mit.edu	37	1	155893538	155893538	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0907	22889	broad.mit.edu	37	1	155893549	155893549	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1009	22832	broad.mit.edu	37	6	84870494	84870494	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57182333	57182333	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24447405	24447405	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1267	284058	broad.mit.edu	37	17	44127970	44127970	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1279	26128	broad.mit.edu	37	10	70768559	70768559	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138601712	138601712	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43490647	43490647	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20949719	20949719	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1841	84542	broad.mit.edu	37	2	61304155	61304155	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13B	23303	broad.mit.edu	37	8	28980806	28980806	+	Intron	SNP	C	G	G	rs148930492	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200968940	200968940	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57969111	57969111	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIN	22944	broad.mit.edu	37	10	7829911	7829911	+	5'UTR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55250038	55250038	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL3	115653	broad.mit.edu	37	19	55247207	55247207	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158035477	158035477	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL12	59349	broad.mit.edu	37	1	202888887	202888887	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK15	55554	broad.mit.edu	37	19	51328990	51328990	+	3'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT15	3866	broad.mit.edu	37	17	39672374	39672374	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT36	8689	broad.mit.edu	37	17	39644469	39644469	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT40	125115	broad.mit.edu	37	17	39140293	39140293	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT5	3852	broad.mit.edu	37	12	52913845	52913845	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT71	112802	broad.mit.edu	37	12	52941473	52941473	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53169122	53169122	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT84	3890	broad.mit.edu	37	12	52778620	52778620	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT85	3891	broad.mit.edu	37	12	52756497	52756497	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-4	386672	broad.mit.edu	37	21	45994747	45994748	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-2	337959	broad.mit.edu	37	21	31744618	31744618	+	5'Flank	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-6	337973	broad.mit.edu	37	21	31913884	31913884	+	3'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP26-1	388818	broad.mit.edu	37	21	31692293	31692293	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KY	339855	broad.mit.edu	37	3	134327420	134327420	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153129757	153129757	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153132395	153132395	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153132828	153132828	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153152423	153152423	+	5'Flank	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LACRT	90070	broad.mit.edu	37	12	55026991	55026991	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6959305	6959305	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7013968	7013968	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129725087	129725087	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107688431	107688431	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107704278	107704278	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL3	347404	broad.mit.edu	37	X	37515063	37515063	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1B	55132	broad.mit.edu	37	4	128998985	128998985	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1E	353135	broad.mit.edu	37	1	152760043	152760043	+	Missense_Mutation	SNP	C	G	G	rs148284954	byFrequency	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCLAT1	253558	broad.mit.edu	37	2	30756248	30756248	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN8	138307	broad.mit.edu	37	9	139649685	139649685	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136561677	136561677	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEKR1	389170	broad.mit.edu	37	3	156763436	156763436	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS13	29124	broad.mit.edu	37	19	40094554	40094554	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48914966	48914966	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104310080	104310080	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIFR	3977	broad.mit.edu	37	5	38493703	38493703	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106169	55106169	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106512	55106512	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54756142	54756142	+	Intron	DEL	T	-	-	rs72087	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPI	149998	broad.mit.edu	37	21	15481394	15481394	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPI	149998	broad.mit.edu	37	21	15554225	15554225	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD1	55788	broad.mit.edu	37	6	70386465	70386465	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMLN	89782	broad.mit.edu	37	3	197703313	197703313	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNB1	4001	broad.mit.edu	37	5	126161782	126161782	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNB2	84823	broad.mit.edu	37	19	2432450	2432450	+	Silent	SNP	C	A	A	rs11882908	byFrequency;by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165177461	165177461	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94656009	94656009	+	5'Flank	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283404	283404	broad.mit.edu	37	12	52605632	52605632	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440905	440905	broad.mit.edu	37	2	130792665	130792665	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442308	442308	broad.mit.edu	37	7	55714470	55714470	+	RNA	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442459	442459	broad.mit.edu	37	X	98974715	98974716	+	RNA	DNP	CT	TG	TG			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550112	550112	broad.mit.edu	37	4	68904828	68904828	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21938026	21938026	+	RNA	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647288	647288	broad.mit.edu	37	13	75812260	75812260	+	3'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647288	647288	broad.mit.edu	37	13	75813309	75813309	+	3'UTR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF2	164832	broad.mit.edu	37	2	100903408	100903408	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXHD1	125336	broad.mit.edu	37	18	44172047	44172047	+	Intron	DEL	G	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161032568	161032568	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT4	254531	broad.mit.edu	37	15	34654892	34654892	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82416074	82416074	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62641411	62641411	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62910273	62910273	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62933897	62933897	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR1	54886	broad.mit.edu	37	9	104086288	104086288	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141093280	141093280	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141215061	141215061	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141259433	141259433	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141457753	141457753	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141773438	141773438	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	142005043	142005043	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170096348	170096348	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46921927	46921927	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP5	4041	broad.mit.edu	37	11	68154221	68154221	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC29	26231	broad.mit.edu	37	16	67246943	67246943	+	5'Flank	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC52	440699	broad.mit.edu	37	1	165532869	165532869	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC58	116064	broad.mit.edu	37	3	120067582	120067582	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70300559	70300559	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85466712	85466712	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85546867	85546867	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74506933	74506933	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40734092	40734092	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33477883	33477883	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUM	4060	broad.mit.edu	37	12	91502284	91502284	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160746710	160746710	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235972212	235972212	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTR1	8216	broad.mit.edu	37	22	21341877	21341877	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA10	4109	broad.mit.edu	37	X	151303812	151303813	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA10	4109	broad.mit.edu	37	X	151304022	151304022	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB1	4112	broad.mit.edu	37	X	30269348	30269348	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC2	51438	broad.mit.edu	37	X	141291192	141291192	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC2	51438	broad.mit.edu	37	X	141291484	141291484	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140968495	140968495	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140969697	140969697	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77691641	77691641	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1D	254042	broad.mit.edu	37	2	172926339	172926339	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210559290	210559290	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K3	4215	broad.mit.edu	37	17	61769652	61769652	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D3	79649	broad.mit.edu	37	X	135304710	135304710	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16067613	16067613	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS1	8720	broad.mit.edu	37	16	84118534	84118534	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC4R	4160	broad.mit.edu	37	18	58039571	58039571	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138670620	138670620	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138712044	138712044	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP2	55784	broad.mit.edu	37	15	94986025	94986025	+	Intron	SNP	G	T	T	rs75281537	byFrequency;by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90437507	90437507	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED8	112950	broad.mit.edu	37	1	43851600	43851600	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED8	112950	broad.mit.edu	37	1	43853255	43853255	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS1	4211	broad.mit.edu	37	2	66739435	66739435	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP3L	9848	broad.mit.edu	37	4	170926850	170926850	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD6L	162387	broad.mit.edu	37	17	8701314	8701314	+	Silent	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141730463	141730463	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4C	25834	broad.mit.edu	37	12	86373695	86373695	+	Frame_Shift_Del	DEL	G	-	-	rs141479653		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MID2	11043	broad.mit.edu	37	X	107159115	107159115	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR650	723778	broad.mit.edu	37	22	23165338	23165338	+	RNA	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH3	27030	broad.mit.edu	37	14	75489858	75489858	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168352880	168352880	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLXIPL	51085	broad.mit.edu	37	7	73010750	73010750	+	Missense_Mutation	SNP	C	G	G	rs140888200		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMD2	221938	broad.mit.edu	37	7	4947178	4947178	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154834807	154834807	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154862197	154862197	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89180006	89180006	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP19	4327	broad.mit.edu	37	12	56234974	56234974	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP8	4317	broad.mit.edu	37	11	102585401	102585401	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90816172	90816172	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158813702	158813702	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154020396	154020396	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP4	58538	broad.mit.edu	37	2	202554925	202554925	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRE11A	4361	broad.mit.edu	37	11	94189495	94189495	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MREG	55686	broad.mit.edu	37	2	216809781	216809781	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60183516	60183516	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6A	64231	broad.mit.edu	37	11	59939471	59939471	+	3'UTR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSR1	4481	broad.mit.edu	37	8	15998438	15998438	+	Intron	SNP	G	T	T	rs144128888	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	236973898	236973898	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTSS1	9788	broad.mit.edu	37	8	125565848	125565848	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	30046251	30046251	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9009791	9009791	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9065829	9065829	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100678478	100678478	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100685357	100685357	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100694842	100694842	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC20	200958	broad.mit.edu	37	3	195453055	195453055	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71346782	71346783	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYADML	151325	broad.mit.edu	37	2	33952354	33952354	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC2	4606	broad.mit.edu	37	19	50957559	50957559	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCL1	4610	broad.mit.edu	37	1	40363231	40363231	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81102421	81102421	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81102806	81102806	+	3'UTR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108216795	108216795	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10406525	10406525	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10304107	10304107	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL6	4637	broad.mit.edu	37	12	56552145	56552145	+	5'UTR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26173729	26173729	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO19	80179	broad.mit.edu	37	17	34863706	34863706	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171240248	171240248	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5C	55930	broad.mit.edu	37	15	52524934	52524934	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOZ2	51778	broad.mit.edu	37	4	120107369	120107369	+	3'UTR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP2	55728	broad.mit.edu	37	4	40104598	40104598	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NACA2	342538	broad.mit.edu	37	17	59668401	59668401	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101795290	101795290	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NANS	54187	broad.mit.edu	37	9	100823378	100823378	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPB	63908	broad.mit.edu	37	20	23361956	23361956	+	Splice_Site	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARF	26502	broad.mit.edu	37	17	80417920	80417920	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NASP	4678	broad.mit.edu	37	1	46078970	46078970	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78415527	78415527	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78522559	78522559	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90976560	90976560	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145310260	145310260	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22804571	22804571	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAN	1463	broad.mit.edu	37	19	19338219	19338219	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134047240	134047240	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH2	29781	broad.mit.edu	37	22	50955911	50955911	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133541934	133541934	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133542605	133542605	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133727416	133727416	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	134205092	134205092	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCR1	9437	broad.mit.edu	37	19	55420766	55420766	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115769463	115769463	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115997623	115997623	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS1	4719	broad.mit.edu	37	2	207011778	207011778	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21384783	21384783	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152467372	152467372	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB1	64168	broad.mit.edu	37	8	91855435	91855435	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD1	121441	broad.mit.edu	37	12	97334303	97334303	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4L	23327	broad.mit.edu	37	18	55974642	55974642	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEIL3	55247	broad.mit.edu	37	4	178262518	178262518	+	Intron	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK9	91754	broad.mit.edu	37	14	75583134	75583134	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73562350	73562350	+	Splice_Site	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROD4	58158	broad.mit.edu	37	12	55420716	55420716	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC2	4773	broad.mit.edu	37	20	50052213	50052213	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC2	4773	broad.mit.edu	37	20	50090788	50090788	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBIA	4792	broad.mit.edu	37	14	35871818	35871818	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236193008	236193008	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52535440	52535440	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63769469	63769469	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAP	79576	broad.mit.edu	37	X	119077253	119077253	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKTR	4820	broad.mit.edu	37	3	42680803	42680803	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5481286	5481286	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247588619	247588619	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247611665	247611665	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56569599	56569599	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNT	23530	broad.mit.edu	37	5	43612974	43612974	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL4	8715	broad.mit.edu	37	18	31538076	31538076	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155774779	155774779	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS2	4862	broad.mit.edu	37	2	101564848	101564848	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP3	27031	broad.mit.edu	37	3	132423271	132423271	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153659432	153659432	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153661419	153661419	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY1R	4886	broad.mit.edu	37	4	164247263	164247263	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16339226	16339226	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP1	8829	broad.mit.edu	37	10	33514998	33514998	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	80327846	80327846	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5DC3	51559	broad.mit.edu	37	12	104179254	104179254	+	Splice_Site	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5E	4907	broad.mit.edu	37	6	86203724	86203724	+	3'UTR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131682670	131682670	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUAK1	9891	broad.mit.edu	37	12	106464710	106464710	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUCKS1	64710	broad.mit.edu	37	1	205696904	205696904	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135309964	135309964	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16874686	16874686	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16925764	16925764	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16925862	16925862	+	3'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF1	10482	broad.mit.edu	37	11	62563752	62563752	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102337745	102337745	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101092099	101092099	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH2	11249	broad.mit.edu	37	2	139429201	139429201	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24877601	24877601	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228475733	228475733	+	Intron	SNP	G	T	T	rs140417328	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF2L	57489	broad.mit.edu	37	1	86826108	86826108	+	Splice_Site	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167625938	167625938	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167689373	167689373	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183675671	183675671	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67283822	67283822	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67290529	67290529	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6866923	6866923	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1K1	392392	broad.mit.edu	37	9	125563218	125563218	+	Missense_Mutation	SNP	C	A	A	rs150392492		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1L6	392390	broad.mit.edu	37	9	125512435	125512435	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A12	346525	broad.mit.edu	37	7	143792345	143792345	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A12	346525	broad.mit.edu	37	7	143792734	143792734	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A25	392138	broad.mit.edu	37	7	143772060	143772060	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247641	248247641	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248366366	248366366	+	5'Flank	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248366457	248366457	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T11	127077	broad.mit.edu	37	1	248789889	248789889	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T2	401992	broad.mit.edu	37	1	248616444	248616444	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248637470	248637470	+	Silent	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248637472	248637472	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W5	441932	broad.mit.edu	37	1	247654783	247654783	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D2	124538	broad.mit.edu	37	17	56247586	56247586	+	Silent	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4F17	81099	broad.mit.edu	37	19	110736	110736	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20295777	20295777	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22332698	22332698	+	5'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G2	81282	broad.mit.edu	37	11	4936211	4936211	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51I1	390063	broad.mit.edu	37	11	5462058	5462058	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51V1	283111	broad.mit.edu	37	11	5221887	5221887	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A4	390053	broad.mit.edu	37	11	5142800	5142800	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B2	255725	broad.mit.edu	37	11	6191551	6191551	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52L1	338751	broad.mit.edu	37	11	6007733	6007733	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AC2	81050	broad.mit.edu	37	3	97806267	97806267	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D16	390144	broad.mit.edu	37	11	55606547	55606547	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55595287	55595287	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5R1	219479	broad.mit.edu	37	11	56185706	56185706	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C65	403282	broad.mit.edu	37	12	55794780	55794780	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C74	254783	broad.mit.edu	37	12	55641839	55641839	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6W1P	89883	broad.mit.edu	37	7	142760414	142760414	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55905149	55905149	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57876667	57876667	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL1A	114876	broad.mit.edu	37	18	21894275	21894275	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76763016	76763016	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76769070	76769070	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31862380	31862380	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29644166	29644166	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA1	5033	broad.mit.edu	37	10	74828489	74828489	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1L	80336	broad.mit.edu	37	20	43547788	43547788	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC3	5042	broad.mit.edu	37	13	25670841	25670841	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17548722	17548722	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE2	203569	broad.mit.edu	37	X	55116411	55116411	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE5	90737	broad.mit.edu	37	X	55248955	55248955	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110345258	110345258	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110407025	110407025	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9519912	9519912	+	3'UTR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9524904	9524904	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAMR1	25891	broad.mit.edu	37	11	35457441	35457441	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAMR1	25891	broad.mit.edu	37	11	35492375	35492375	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAMR1	25891	broad.mit.edu	37	11	35497254	35497254	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAN2	9924	broad.mit.edu	37	12	56712181	56712181	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118974078	118974078	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226562154	226562154	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150794057	150794057	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150839355	150839355	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91368385	91368385	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55782595	55782595	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58209103	58209103	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67800785	67800785	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA2	56146	broad.mit.edu	37	5	140176248	140176248	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140221203	140221203	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHAC1	56135	broad.mit.edu	37	5	140306846	140306846	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140590108	140590108	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB15	56121	broad.mit.edu	37	5	140625448	140625448	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB16	57717	broad.mit.edu	37	5	140563361	140563361	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140736948	140736948	+	Silent	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA7	56108	broad.mit.edu	37	5	140763581	140763581	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140772616	140772616	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA9	56107	broad.mit.edu	37	5	140782984	140782984	+	Silent	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82387925	82387925	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82595465	82595465	+	Silent	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCP4	5121	broad.mit.edu	37	21	41239534	41239534	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165863795	165863795	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165989859	165989859	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72291909	72291909	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14695841	14695841	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144912277	144912277	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	59258912	59258912	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE8B	8622	broad.mit.edu	37	5	76587414	76587414	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA5	10954	broad.mit.edu	37	3	122829679	122829679	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39878841	39878841	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDYN	5173	broad.mit.edu	37	20	1971855	1971855	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41946494	41946494	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239165481	239165481	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER3	8863	broad.mit.edu	37	1	7902685	7902685	+	Intron	DEL	G	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX1	5189	broad.mit.edu	37	7	92136428	92136428	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB2	5208	broad.mit.edu	37	1	207241211	207241211	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58349579	58349579	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHC2	1912	broad.mit.edu	37	1	33799908	33799908	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF17	79960	broad.mit.edu	37	4	129773557	129773557	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47675021	47675021	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGA	5277	broad.mit.edu	37	X	15339934	15339935	+	Intron	INS	-	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGG	54872	broad.mit.edu	37	4	527748	527748	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGS	94005	broad.mit.edu	37	17	26890566	26890566	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204428909	204428909	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8791675	8791675	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209142260	209142260	+	Splice_Site	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1B	8395	broad.mit.edu	37	9	71404540	71404540	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130838877	130838878	+	Intron	DNP	GG	AT	AT			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47924193	47924193	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110394616	110394616	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110401413	110401413	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110401418	110401418	+	Intron	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110452896	110452896	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110466953	110466953	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110535121	110535121	+	Splice_Site	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51512866	51512866	+	Silent	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51774220	51774220	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKLR	5313	broad.mit.edu	37	1	155263996	155263996	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186902039	186902039	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59807993	59807993	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1	10761	broad.mit.edu	37	X	133700794	133700794	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28739721	28739721	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28826903	28826903	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8364688	8364688	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9389681	9389681	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA3	65977	broad.mit.edu	37	2	179358546	179358546	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG7	440107	broad.mit.edu	37	12	93150195	93150195	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEK	5341	broad.mit.edu	37	2	68618572	68618572	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK2	10769	broad.mit.edu	37	5	57750882	57750882	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD2	5352	broad.mit.edu	37	3	145794528	145794528	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR4	57088	broad.mit.edu	37	3	145917718	145917718	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLTP	5360	broad.mit.edu	37	20	44540122	44540122	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20125131	20125131	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	132186040	132186040	+	Intron	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2	5395	broad.mit.edu	37	7	6029498	6029498	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP1	5407	broad.mit.edu	37	10	118354340	118354340	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA4	8228	broad.mit.edu	37	X	7894005	7894005	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA6	10908	broad.mit.edu	37	19	7621273	7621273	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POC1B	282809	broad.mit.edu	37	12	89895933	89895933	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2D	5433	broad.mit.edu	37	2	128605863	128605863	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PON1	5444	broad.mit.edu	37	7	94935291	94935291	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POP1	10940	broad.mit.edu	37	8	99162791	99162791	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38160333	38160333	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43197382	43197382	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130832525	130832525	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F1	5451	broad.mit.edu	37	1	167341458	167341458	+	Intron	SNP	G	T	T	rs113539813		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23803407	23803408	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81732932	81732932	+	Intron	DEL	G	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1B	5495	broad.mit.edu	37	2	44428897	44428897	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2C	5522	broad.mit.edu	37	4	6377505	6377505	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2C	5522	broad.mit.edu	37	4	6384119	6384119	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5E	5529	broad.mit.edu	37	14	63893654	63893654	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPTC7	160760	broad.mit.edu	37	12	110989587	110989587	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM15	63977	broad.mit.edu	37	21	43259796	43259796	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23509749	23509749	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDX1	5052	broad.mit.edu	37	1	45981386	45981386	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREPL	9581	broad.mit.edu	37	2	44550032	44550032	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69033345	69033345	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186270774	186270774	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR1B	5575	broad.mit.edu	37	7	751061	751061	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54392933	54392933	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30066904	30066904	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG2	5593	broad.mit.edu	37	4	82031530	82031530	+	Intron	SNP	C	G	G	rs75137576	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIR	5612	broad.mit.edu	37	11	76061868	76061869	+	3'UTR	DNP	CC	AG	AG			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT6	55170	broad.mit.edu	37	1	107599749	107599749	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR1	10887	broad.mit.edu	37	2	68882117	68882117	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR16	51334	broad.mit.edu	37	5	120022254	120022254	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45204300	45204300	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5L	79899	broad.mit.edu	37	11	36477059	36477059	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRC1	133619	broad.mit.edu	37	5	126860319	126860319	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS21	10942	broad.mit.edu	37	16	2868654	2868654	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43514447	43514447	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43529239	43529239	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43770536	43770536	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD14	10213	broad.mit.edu	37	2	162175365	162175365	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH1	5727	broad.mit.edu	37	9	98242852	98242852	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11563012	11563012	+	Intron	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71437493	71437493	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFRN	5738	broad.mit.edu	37	1	117516790	117516790	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIR	5739	broad.mit.edu	37	19	47124832	47124832	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209308341	209308341	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN3	5774	broad.mit.edu	37	9	112172594	112172594	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70931903	70931903	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	71029634	71029634	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8340469	8340469	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	7653465	7653465	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157926395	157926395	+	Silent	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71050357	71050357	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71054684	71054684	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29605971	29605971	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL2	5819	broad.mit.edu	37	19	45371723	45371724	+	Intron	INS	-	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVT1	5820	broad.mit.edu	37	8	129061356	129061356	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52325704	52325704	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52370045	52370045	+	Intron	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52384858	52384858	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1687855	1687855	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158914669	158914669	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9307398	9307398	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QKI	9444	broad.mit.edu	37	6	163983052	163983052	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRFPR	84109	broad.mit.edu	37	4	122290832	122290832	+	Intron	DEL	C	-	-	rs117168364	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3C	115827	broad.mit.edu	37	5	58120941	58120941	+	Nonsense_Mutation	SNP	G	T	T	rs140644565		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB5C	5878	broad.mit.edu	37	17	40278778	40278778	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD23B	5887	broad.mit.edu	37	9	110087285	110087285	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17697671	17697671	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L	8438	broad.mit.edu	37	1	46724319	46724319	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20582194	20582194	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20582196	20582196	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS1	9649	broad.mit.edu	37	9	129812360	129812360	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GDS1	5910	broad.mit.edu	37	4	99313231	99313231	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF2	9693	broad.mit.edu	37	4	160277144	160277144	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP9	10741	broad.mit.edu	37	20	18474555	18474555	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114386694	114386694	+	Missense_Mutation	SNP	C	A	A	rs139661395		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM43	375287	broad.mit.edu	37	2	152107565	152107565	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REC8	9985	broad.mit.edu	37	14	24642162	24642162	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REEP2	51308	broad.mit.edu	37	5	137774945	137774945	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79348066	79348066	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79255008	79255008	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103185706	103185706	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107047946	107047946	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117248703	117248703	+	Splice_Site	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX8	731220	broad.mit.edu	37	2	102033915	102033915	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG1	57529	broad.mit.edu	37	X	109696888	109696888	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108494807	108494807	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS3	5998	broad.mit.edu	37	9	116276566	116276566	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOJ	57381	broad.mit.edu	37	14	63749849	63749849	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130963582	130963582	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS3	9783	broad.mit.edu	37	1	41107561	41107561	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40687116	40687116	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLBP1	6017	broad.mit.edu	37	15	89760499	89760499	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87098403	87098403	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87106727	87106727	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE10	338879	broad.mit.edu	37	14	20978543	20978543	+	5'Flank	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE7	84659	broad.mit.edu	37	14	21511722	21511722	+	3'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31521491	31521491	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF103	7844	broad.mit.edu	37	2	86831528	86831529	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNGTT	8732	broad.mit.edu	37	6	89324082	89324082	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORC	6097	broad.mit.edu	37	1	151779972	151779972	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117653546	117653546	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68895600	68895600	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68895602	68895602	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113267192	113267193	+	Intron	INS	-	A	A	rs145515091	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPIA	22934	broad.mit.edu	37	2	88991200	88991200	+	5'UTR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10	6134	broad.mit.edu	37	X	153627737	153627737	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL32P3	132241	broad.mit.edu	37	3	129113029	129113029	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KB2	6199	broad.mit.edu	37	11	67200751	67200751	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPSAP9	653162	broad.mit.edu	37	9	79013773	79013773	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78829150	78829150	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPUSD4	84881	broad.mit.edu	37	11	126081354	126081354	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH10B2	728194	broad.mit.edu	37	7	5967760	5967760	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60076864	60076864	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67753743	67753743	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67817252	67817252	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUVBL2	10856	broad.mit.edu	37	19	49506546	49506546	+	Silent	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159548022	159548022	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38976291	38976291	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237604629	237604629	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237617851	237617851	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237620013	237620013	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237670056	237670056	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237850877	237850877	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237995920	237995920	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33855184	33855184	+	Silent	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARM1	23098	broad.mit.edu	37	17	26711501	26711501	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB1	6304	broad.mit.edu	37	3	18427992	18427993	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAPER	49855	broad.mit.edu	37	15	76641023	76641023	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCIN	85477	broad.mit.edu	37	7	12679964	12679964	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165972143	165972143	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN1	9805	broad.mit.edu	37	7	29976411	29976411	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHAP2	727956	broad.mit.edu	37	3	195413691	195413691	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23IP	11196	broad.mit.edu	37	10	121689157	121689157	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC63	11231	broad.mit.edu	37	6	108250766	108250766	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83689838	83689838	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84628848	84628848	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84642089	84642089	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84727156	84727156	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4F	10505	broad.mit.edu	37	2	74898556	74898556	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9197248	9197248	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9238004	9238004	+	Splice_Site	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9318358	9318358	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMG1	6406	broad.mit.edu	37	20	43836227	43836228	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT12	124404	broad.mit.edu	37	16	4836082	4836082	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB11	89778	broad.mit.edu	37	18	61391443	61391443	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61264720	61264720	+	3'UTR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61328151	61328151	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESN3	143686	broad.mit.edu	37	11	94917779	94917779	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42449213	42449213	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42531077	42531077	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42532214	42532214	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37431390	37431390	+	5'UTR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD6	79918	broad.mit.edu	37	16	58552873	58552873	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135144819	135144819	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67098906	67098906	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK1	6446	broad.mit.edu	37	6	134583133	134583133	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D1A	4068	broad.mit.edu	37	X	123504058	123504058	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BGRL2	83699	broad.mit.edu	37	6	80406313	80406313	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3RF2	153769	broad.mit.edu	37	5	145435380	145435380	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146240474	146240474	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52000316	52000316	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52002319	52002319	+	Intron	SNP	C	A	A	rs111229073		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM2	6493	broad.mit.edu	37	21	38115668	38115668	+	Intron	DEL	G	-	-	rs140462434	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72176309	72176309	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232650142	232650142	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38610446	38610446	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164709171	164709171	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48513161	48513161	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48519296	48519296	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44665793	44665793	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A6	9990	broad.mit.edu	37	15	34536219	34536219	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A1	6563	broad.mit.edu	37	18	43319026	43319026	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A1	6563	broad.mit.edu	37	18	43329753	43329753	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	42859183	42859183	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43117568	43117568	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A1	6564	broad.mit.edu	37	13	99364189	99364189	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A2	6565	broad.mit.edu	37	3	121634527	121634527	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25921243	25921243	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A3	6507	broad.mit.edu	37	5	36671276	36671276	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC20A2	6575	broad.mit.edu	37	8	42302219	42302219	+	Silent	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A2	9962	broad.mit.edu	37	20	4837809	4837809	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19261613	19261613	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92959791	92959791	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A21	89874	broad.mit.edu	37	14	37307114	37307114	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A32	81034	broad.mit.edu	37	8	104413780	104413780	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A33	84275	broad.mit.edu	37	1	9642417	9642417	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A5	292	broad.mit.edu	37	X	118604335	118604335	+	Splice_Site	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103018953	103018953	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92406529	92406529	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85448917	85448917	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85488009	85488009	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35C2	51006	broad.mit.edu	37	20	44987841	44987841	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC41A1	254428	broad.mit.edu	37	1	205764004	205764004	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC41A2	84102	broad.mit.edu	37	12	105280131	105280131	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A3	126969	broad.mit.edu	37	1	95311004	95311004	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A1	50651	broad.mit.edu	37	1	8398030	8398030	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74534679	74534679	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85264382	85264382	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A3	84889	broad.mit.edu	37	X	70147645	70147645	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40656626	40656626	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A10	285335	broad.mit.edu	37	3	111923162	111923162	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20874846	20874846	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168212741	168212741	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD1	6609	broad.mit.edu	37	11	6412231	6412231	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246165922	246165922	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246396341	246396341	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCB	6620	broad.mit.edu	37	5	176048192	176048192	+	Intron	SNP	G	T	T	rs116166081	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25468631	25468631	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPD2	6633	broad.mit.edu	37	19	46191107	46191107	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25154133	25154134	+	Intron	DNP	CC	AT	AT			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121662115	121662115	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51617247	51617247	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX14	57231	broad.mit.edu	37	6	86215638	86215638	+	3'UTR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX27	81609	broad.mit.edu	37	1	151638447	151638447	+	Silent	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX31	169166	broad.mit.edu	37	8	101624205	101624205	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX9	51429	broad.mit.edu	37	6	158288741	158288741	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOBP	55084	broad.mit.edu	37	6	107956353	107956353	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108380164	108380164	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS2	57537	broad.mit.edu	37	4	7650371	7650371	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231135280	231135280	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPACA1	81833	broad.mit.edu	37	6	88776086	88776086	+	3'UTR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG11B	10407	broad.mit.edu	37	8	7315482	7315482	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118550775	118550775	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN3	139067	broad.mit.edu	37	X	142596910	142596910	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN3	139067	broad.mit.edu	37	X	142596921	142596921	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN4	441525	broad.mit.edu	37	X	142120673	142120673	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA6	54558	broad.mit.edu	37	1	48865330	48865330	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATS1	221409	broad.mit.edu	37	6	44328186	44328186	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE1	285955	broad.mit.edu	37	7	44041040	44041040	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220344491	220344491	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS2	124976	broad.mit.edu	37	17	4434436	4434436	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPP2	6694	broad.mit.edu	37	2	234967446	234967446	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158597323	158597323	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158615408	158615408	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131370563	131370563	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	40996178	40996178	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN5	51332	broad.mit.edu	37	15	42169374	42169374	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPZ1	84654	broad.mit.edu	37	5	79616477	79616477	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A3	79644	broad.mit.edu	37	4	56236014	56236014	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP2	23380	broad.mit.edu	37	1	206634213	206634213	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM4	84530	broad.mit.edu	37	12	119563141	119563141	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53025846	53025846	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	76779423	76779423	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC	6769	broad.mit.edu	37	3	36513092	36513092	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136191385	136191385	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG2	10735	broad.mit.edu	37	X	123176531	123176531	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBPL1	57559	broad.mit.edu	37	10	90733067	90733067	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD3NL	83930	broad.mit.edu	37	7	38247335	38247335	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT4	6775	broad.mit.edu	37	2	191923366	191923366	+	Intron	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM2	57620	broad.mit.edu	37	4	27019510	27019510	+	Missense_Mutation	SNP	C	T	T	rs144093498		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK17B	9262	broad.mit.edu	37	2	197004484	197004484	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48807910	48807910	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74473482	74473482	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN3	29966	broad.mit.edu	37	14	31376381	31376381	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STS	412	broad.mit.edu	37	X	7251960	7251961	+	Intron	DNP	GG	TT	TT			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147637559	147637559	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP6	29091	broad.mit.edu	37	14	25459509	25459509	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1B1	27284	broad.mit.edu	37	4	70596167	70596167	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1B1	27284	broad.mit.edu	37	4	70615401	70615401	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT2A1	6822	broad.mit.edu	37	19	48385427	48385427	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48046872	48046872	+	Nonsense_Mutation	SNP	C	A	A	rs145833872		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT16H	11198	broad.mit.edu	37	14	21821759	21821760	+	Intron	INS	-	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75427754	75427754	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152563652	152563652	+	Intron	SNP	C	T	T	rs147432636	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT16	83851	broad.mit.edu	37	14	62541033	62541033	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT16	83851	broad.mit.edu	37	14	62567095	62567095	+	Intron	DEL	T	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL4	94121	broad.mit.edu	37	X	99933578	99933578	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL4	94121	broad.mit.edu	37	X	99956282	99956282	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR6	319100	broad.mit.edu	37	6	132891786	132891786	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB2	23118	broad.mit.edu	37	6	149730865	149730865	+	3'UTR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC1	6867	broad.mit.edu	37	8	38695963	38695963	+	Intron	DEL	A	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR3	6870	broad.mit.edu	37	4	104577477	104577477	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	159954388	159954388	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARDBP	23435	broad.mit.edu	37	1	11078656	11078656	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARSL2	123283	broad.mit.edu	37	15	102242441	102242441	+	Splice_Site	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARSL2	123283	broad.mit.edu	37	15	102252198	102252198	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R2	80834	broad.mit.edu	37	1	19183910	19183910	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D7	51256	broad.mit.edu	37	6	13307837	13307837	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8B	54885	broad.mit.edu	37	X	106093413	106093413	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8B	54885	broad.mit.edu	37	X	106109130	106109130	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX21	30009	broad.mit.edu	37	17	45821856	45821856	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115120535	115120535	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114841357	114841357	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEA1	6917	broad.mit.edu	37	8	54885078	54885078	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL5	340543	broad.mit.edu	37	X	102529198	102529198	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1L	256536	broad.mit.edu	37	10	133046467	133046467	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP10L2	401285	broad.mit.edu	37	6	167590680	167590680	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	120998996	120998996	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT1	83659	broad.mit.edu	37	17	6716111	6716111	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20837665	20837665	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET2	54790	broad.mit.edu	37	4	106180775	106180775	+	Splice_Site	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX10	54881	broad.mit.edu	37	9	103084052	103084052	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56636858	56636858	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133478197	133478197	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133497544	133497544	+	3'UTR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43525419	43525419	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134145918	134145918	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEM5	284486	broad.mit.edu	37	1	151820642	151820642	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	71828619	71828620	+	Intron	DNP	CC	AA	AA			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137748572	137748572	+	Intron	SNP	G	T	T	rs149407903	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155450889	155450889	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE1	7088	broad.mit.edu	37	9	84207865	84207865	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98240077	98240077	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR7	51284	broad.mit.edu	37	X	12905189	12905189	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2592719	2592719	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO5A	145942	broad.mit.edu	37	15	38229028	38229028	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM106B	54664	broad.mit.edu	37	7	12254405	12254405	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44782158	44782158	+	Silent	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM119	338773	broad.mit.edu	37	12	108985620	108985620	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132A	54972	broad.mit.edu	37	11	60695130	60695130	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126068497	126068497	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129822142	129822142	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM155	132332	broad.mit.edu	37	4	122681245	122681245	+	3'UTR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM164	84187	broad.mit.edu	37	X	109414968	109414969	+	Intron	INS	-	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM181	57583	broad.mit.edu	37	6	159010620	159010620	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM18	129787	broad.mit.edu	37	2	673480	673480	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM39A	55254	broad.mit.edu	37	3	119151022	119151022	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM41B	440026	broad.mit.edu	37	11	9321227	9321227	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94797464	94797464	+	Silent	SNP	C	T	T	rs5893258		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM90B	79953	broad.mit.edu	37	20	24565623	24565623	+	Silent	SNP	C	A	A	rs141938685	byFrequency	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM95	339168	broad.mit.edu	37	17	7258984	7258984	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19716212	19716212	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS7	344805	broad.mit.edu	37	3	111794299	111794299	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83444837	83444837	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	170843705	170843705	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNPO3	23534	broad.mit.edu	37	7	128632072	128632072	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175536650	175536650	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175654134	175654134	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175669444	175669444	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32047089	32047089	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L1	10040	broad.mit.edu	37	17	52990025	52990025	+	Splice_Site	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOMM20	9804	broad.mit.edu	37	1	235277206	235277206	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP1	7150	broad.mit.edu	37	20	39750309	39750309	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOPORS	10210	broad.mit.edu	37	9	32542380	32542380	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577570	7577570	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP63	8626	broad.mit.edu	37	3	189448506	189448506	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPD52L1	7164	broad.mit.edu	37	6	125575106	125575106	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144365032	144365032	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10970032	10970032	+	Silent	SNP	G	C	C	rs147186596		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10973711	10973711	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRA2B	6434	broad.mit.edu	37	3	185655424	185655424	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC4	51399	broad.mit.edu	37	11	118889734	118889734	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAT1	50852	broad.mit.edu	37	3	108572570	108572570	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5655032	5655032	+	Splice_Site	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM9	114088	broad.mit.edu	37	14	51489585	51489585	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14508072	14508072	+	Silent	SNP	G	T	T	rs147521780	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT2B	79979	broad.mit.edu	37	X	100274488	100274488	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38213370	38213370	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111090460	111090460	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC7	57113	broad.mit.edu	37	5	135587494	135587494	+	Silent	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45811202	45811202	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV2	51393	broad.mit.edu	37	17	16319588	16319588	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142605666	142605666	+	3'UTR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142626181	142626181	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98591099	98591099	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSEN2	80746	broad.mit.edu	37	3	12560566	12560566	+	Silent	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81554178	81554178	+	Intron	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81610368	81610368	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ1	10194	broad.mit.edu	37	18	72999442	72999442	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN6	7105	broad.mit.edu	37	X	99890233	99890233	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC24	164118	broad.mit.edu	37	1	156552732	156552732	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC39B	158219	broad.mit.edu	37	9	15186804	15186804	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80715696	80715696	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL2	83887	broad.mit.edu	37	6	167754758	167754758	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179434377	179434377	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179483204	179483204	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179516970	179516970	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179517779	179517779	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179554576	179554576	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179582523	179582523	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179583008	179583008	+	Intron	DEL	A	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179584853	179584853	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179585034	179585034	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179593857	179593857	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWSG1	57045	broad.mit.edu	37	18	9360051	9360051	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXLNB	167838	broad.mit.edu	37	6	139564275	139564275	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC16	57544	broad.mit.edu	37	14	52937164	52937164	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRO3	7301	broad.mit.edu	37	15	41864736	41864736	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF2	11338	broad.mit.edu	37	19	56171788	56171788	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3A	53347	broad.mit.edu	37	21	43855156	43855156	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2NL	389898	broad.mit.edu	37	X	142967314	142967314	+	Missense_Mutation	SNP	G	T	T	rs146025392		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109940927	109940927	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN1	29979	broad.mit.edu	37	9	86298077	86298077	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR1	197131	broad.mit.edu	37	15	43367119	43367119	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHMK1	127933	broad.mit.edu	37	1	162482255	162482255	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54527319	54527319	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176258423	176258423	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35583890	35583890	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210654452	210654452	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNG	7374	broad.mit.edu	37	12	109539744	109539744	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPRT	139596	broad.mit.edu	37	X	74519637	74519637	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229795146	229795146	+	3'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215844259	215844259	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215853828	215853828	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215901465	215901465	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216180237	216180237	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216262456	216262456	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP16	10600	broad.mit.edu	37	21	30400249	30400249	+	Silent	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP26	83844	broad.mit.edu	37	X	132161731	132161731	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113677221	113677221	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11924525	11924525	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP4	7375	broad.mit.edu	37	3	49323555	49323555	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144811417	144811417	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	102949403	102949403	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107445388	107445388	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36811960	36811960	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	50630792	50630792	+	IGR	SNP	C	G	G	rs139856032	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	6335137	6335137	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	72852172	72852172	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	86535477	86535477	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	90903729	90903729	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	91947251	91947251	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	109801111	109801111	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13239973	13239973	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	14929437	14929437	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15882141	15882141	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18993602	18993602	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27828145	27828145	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30404508	30404508	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	36770535	36770535	+	IGR	SNP	C	T	T	rs77794667	byFrequency;by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	37318299	37318300	+	IGR	INS	-	T	T	rs72521643		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45101435	45101435	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45612940	45612951	+	IGR	DEL	GCCTTTTTCCAC	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	46264877	46264877	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48486326	48486326	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48930333	48930333	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58009670	58009670	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6088680	6088680	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	7794759	7794759	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	102892323	102892323	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108674978	108674978	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	113453495	113453495	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115675873	115675873	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127349978	127349978	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127828747	127828747	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128258840	128258840	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128258931	128258931	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128735570	128735570	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	13462164	13462164	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	167244	167244	+	IGR	DEL	T	-	-	rs77682244		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	17537278	17537278	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	19566067	19566067	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	27300674	27300674	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34386615	34386615	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34460743	34460743	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43331834	43331834	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43501521	43501521	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	46943802	46943802	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	52738082	52738082	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53125692	53125692	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55516471	55516471	+	IGR	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	93464566	93464566	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	94943120	94943120	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	101552354	101552354	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	103242733	103242733	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	110160593	110160593	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	40771494	40771494	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53335282	53335282	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53469008	53469008	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53711271	53711271	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	66015953	66015953	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75403178	75403178	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75774423	75774423	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	77559878	77559878	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	95410113	95410113	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806630	19806630	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20085197	20085197	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147302	20147302	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21623046	21623046	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44922123	44922123	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	51171775	51171775	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52293821	52293822	+	IGR	DNP	CT	AA	AA			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52295944	52295944	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54458407	54458407	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	73065495	73065495	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20833015	20833015	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21140997	21140997	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	29046519	29046519	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	55296339	55296339	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	56615426	56615426	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	69126901	69126901	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	77272503	77272503	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79852460	79852460	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	23248562	23248563	+	IGR	INS	-	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32849262	32849262	+	IGR	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33006598	33006598	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33629747	33629747	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34178050	34178050	+	IGR	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55452839	55452839	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73975034	73975034	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20418727	20418727	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21555499	21555499	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25288940	25288940	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25607702	25607702	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26592299	26592299	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30330102	30330102	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60214482	60214482	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60366184	60366184	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	70301221	70301221	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	71685927	71685927	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13919623	13919623	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22428409	22428409	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	45156901	45156901	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58330467	58330467	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	19971864	19971864	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20413430	20413430	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20413455	20413455	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	28633686	28633686	+	IGR	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29548487	29548487	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	30544234	30544234	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	30607821	30607821	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31223497	31223497	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35874521	35874521	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	40530170	40530170	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53819128	53819128	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55209139	55209139	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	58464818	58464818	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106433772	106433772	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106435122	106435122	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106623509	106623509	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	108089372	108089372	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	117257246	117257246	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120620712	120620712	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13172773	13172773	+	IGR	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13219358	13219358	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143422088	143422088	+	IGR	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149045689	149045689	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149091755	149091755	+	IGR	SNP	C	A	A	rs144147286	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149261211	149261211	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158694273	158694273	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163031007	163031007	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165999071	165999071	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170085128	170085128	+	IGR	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	18393632	18393632	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216084	192216085	+	IGR	INS	-	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	202057976	202057977	+	IGR	INS	-	TAGA	TAGA	rs145618395	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209223534	209223534	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	215014720	215014720	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219783893	219783893	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221356318	221356318	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222435543	222435543	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222435824	222435824	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224133352	224133352	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	226659096	226659096	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	227643327	227643327	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229207517	229207517	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	245296334	245296334	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248844667	248844667	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	29841111	29841111	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	32893014	32893014	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	4274031	4274031	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	46907876	46907876	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	48281875	48281875	+	IGR	SNP	C	A	A	rs35116395		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	5044938	5044938	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	5351759	5351759	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	5740414	5740414	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	64152648	64152648	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	88590486	88590486	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23649821	23649821	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29602161	29602161	+	IGR	SNP	C	T	T	rs139455880	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36053144	36053144	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37228338	37228338	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	39268048	39268048	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	42381450	42381450	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	44728736	44728736	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	51224620	51224620	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	993441	993441	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10614946	10614946	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10711218	10711218	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11180963	11180963	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20230655	20230655	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	21798440	21798440	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17402640	17402640	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27372707	27372707	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	39336849	39336849	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	50296304	50296304	+	IGR	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105388162	105388162	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106268514	106268514	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107193611	107193611	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108531474	108531474	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117365077	117365077	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118527164	118527164	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	123161448	123161448	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132144818	132144818	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132580493	132580493	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	134538777	134538777	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13555065	13555065	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	144571266	144571266	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146584380	146584380	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	15063066	15063066	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154277968	154277968	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	156126494	156126494	+	IGR	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162357634	162357634	+	IGR	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168253701	168253701	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168572112	168572112	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	173099264	173099264	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17466064	17466064	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	187867937	187867937	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	196174116	196174116	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	207274779	207274779	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	207274781	207274781	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	208922277	208922277	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210044482	210044482	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	222827170	222827170	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	23282124	23282124	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52798521	52798521	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	56977775	56977775	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58479749	58479749	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	62394993	62394993	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	661243	661243	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81425684	81425684	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	88729679	88729679	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91771590	91771591	+	IGR	DEL	TT	-	-	rs71250102		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91873252	91873252	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91936783	91936783	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	107731439	107731439	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	126011753	126011753	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	138882034	138882034	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	140297070	140297070	+	IGR	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	140921781	140921781	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	142896023	142896023	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	156974740	156974740	+	IGR	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163719588	163719588	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	165944792	165944792	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	177667570	177667570	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180040842	180040842	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34542382	34542382	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	55298654	55298654	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76483284	76483284	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76484002	76484002	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	94225933	94225933	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96069759	96069759	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111338110	111338110	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13340146	13340146	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135873956	135873956	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135967304	135967304	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	136292313	136292313	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139482603	139482603	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	147512073	147512073	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18057030	18057030	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182749510	182749510	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190576855	190576866	+	IGR	DEL	CACACACACGCA	-	-	rs67330044	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190590993	190590993	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190591187	190591187	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190669669	190669669	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	191028479	191028479	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28825518	28825518	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012710	33012710	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3609155	3609155	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65297703	65297703	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69148225	69148225	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69170677	69170677	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69790514	69790514	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69991988	69991988	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70255308	70255308	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70274776	70274776	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70276665	70276665	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	89431529	89431529	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9024946	9024946	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105685155	105685155	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105752130	105752130	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	108927610	108927610	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110286251	110286251	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	114538789	114538789	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	131392479	131392479	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	14652602	14652602	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16364528	16364528	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	170948861	170948861	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	175048667	175048667	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25909776	25909776	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33527200	33527200	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	37904904	37904904	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40987594	40987594	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	58477	58477	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	62597875	62597875	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	64356614	64356614	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	67633738	67633738	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	72448334	72448334	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75374903	75374903	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	78004767	78004767	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	88416189	88416189	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97416279	97416279	+	IGR	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	130122798	130122798	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	156659155	156659155	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	166090660	166090660	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54160384	54160384	+	IGR	DEL	G	-	-	rs35585658		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	5847441	5847441	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58577346	58577346	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63573028	63573028	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66547631	66547631	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66547801	66547801	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	765263	765263	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85140105	85140105	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	949307	949307	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	97096671	97096671	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10491269	10491269	+	IGR	SNP	G	T	T	rs7802010	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	121801726	121801726	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	122879340	122879340	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136399929	136399929	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	137808718	137808718	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142605637	142605637	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143702084	143702084	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144807401	144807401	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	150607103	150607103	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	150845636	150845636	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152755576	152755576	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	27088176	27088176	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41169040	41169040	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42609763	42609763	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48179964	48179964	+	IGR	SNP	T	A	A	rs138511607	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48876784	48876784	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930127	53930127	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55003131	55003131	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56365427	56365427	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57710231	57710231	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61829803	61829803	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62910368	62910368	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63036177	63036177	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65970873	65970873	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	71217593	71217593	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84613988	84613988	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9767531	9767531	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	108590445	108590445	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	109143544	109143544	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	112146758	112146758	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	125759723	125759723	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	125796286	125796286	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	126629144	126629144	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	131602544	131602544	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	131749234	131749234	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136819993	136819993	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	139065117	139065117	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	1678774	1678774	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	26868222	26868222	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43126794	43126794	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47009750	47009750	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47014100	47014100	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47089092	47089092	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47341392	47341392	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47342395	47342395	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47491211	47491211	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65359453	65359453	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	71007109	71007109	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	81263553	81263553	+	IGR	SNP	G	T	T	rs147278532	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	97121290	97121290	+	IGR	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	97632747	97632747	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98366086	98366086	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	102068572	102068572	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	103494470	103494470	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109484917	109484917	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	111516140	111516140	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	117436938	117436938	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120243736	120243736	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120525766	120525767	+	IGR	DNP	GG	AT	AT			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	123065282	123065282	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	125424969	125424969	+	IGR	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	129053951	129053951	+	IGR	DEL	C	-	-	rs35861987		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	13796649	13796649	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	35913721	35913721	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	35913773	35913773	+	IGR	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44093243	44093243	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66482623	66482623	+	IGR	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68352286	68352286	+	IGR	SNP	T	C	C	rs76432882	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68383674	68383674	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68425328	68425328	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68464911	68464911	+	IGR	SNP	T	C	C	rs150756418	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78910222	78910222	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81652222	81652222	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	89699408	89699408	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90414586	90414586	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100852572	100852572	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106579939	106579939	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106697287	106697287	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	113143090	113143090	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115882641	115882641	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	119893614	119893614	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	121672630	121672630	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	121672670	121672670	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	130356221	130356221	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	13397171	13397171	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134743406	134743406	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134747018	134747018	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136743287	136743287	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141261487	141261488	+	IGR	INS	-	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145061223	145061223	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145701612	145701612	+	IGR	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146891422	146891422	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147280129	147280129	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147546727	147546727	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151020969	151020969	+	IGR	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151073519	151073519	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151738820	151738820	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	152250586	152250586	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	3060369	3060369	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	3063561	3063561	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43967414	43967414	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45556413	45556413	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	47663257	47663257	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51903223	51903223	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52640809	52640809	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52825128	52825128	+	IGR	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	62186310	62186310	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68519412	68519412	+	IGR	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78579156	78579156	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	91931812	91931812	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92477814	92477814	+	IGR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92477914	92477914	+	IGR	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92543863	92543863	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92621183	92621183	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	96864061	96864061	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97507462	97507462	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	98426728	98426728	+	IGR	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13453878	13453878	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59012575	59012575	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59019925	59019925	+	IGR	DEL	A	-	-	rs55674607		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9931581	9931581	+	IGR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9934778	9934778	+	IGR	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VASP	7408	broad.mit.edu	37	19	46029247	46029247	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108307794	108307794	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108370261	108370261	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82817274	82817274	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82837181	82837181	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCP	7415	broad.mit.edu	37	9	35057457	35057457	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIL1	7429	broad.mit.edu	37	2	219293043	219293043	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIM	7431	broad.mit.edu	37	10	17272616	17272616	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN2	8875	broad.mit.edu	37	6	133072510	133072510	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62241556	62241556	+	Intron	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTCN1	79679	broad.mit.edu	37	1	117689464	117689464	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA5B1	127731	broad.mit.edu	37	1	20653644	20653644	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWC2	375567	broad.mit.edu	37	7	49951783	49951783	+	3'UTR	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85605170	85605170	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR16	146845	broad.mit.edu	37	17	9511513	9511513	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR47	22911	broad.mit.edu	37	1	109524461	109524461	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR59	79726	broad.mit.edu	37	16	74927627	74927627	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR63	126820	broad.mit.edu	37	1	85551462	85551462	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR65	149465	broad.mit.edu	37	1	43649515	43649515	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPF1	7456	broad.mit.edu	37	2	175436403	175436403	+	Splice_Site	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK3	65267	broad.mit.edu	37	X	54320956	54320957	+	Intron	INS	-	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT7A	7476	broad.mit.edu	37	3	13860878	13860878	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108618608	108618608	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73068841	73068841	+	RNA	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10755724	10755724	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKRX	402415	broad.mit.edu	37	X	100183300	100183300	+	5'UTR	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128875919	128875919	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128880503	128880503	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128894414	128894414	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC6BP1	91419	broad.mit.edu	37	12	58340696	58340696	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100334679	100334679	+	Silent	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167051743	167051743	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB38	253461	broad.mit.edu	37	3	141163054	141163054	+	Silent	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB41	360023	broad.mit.edu	37	1	197144308	197144308	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H14	79882	broad.mit.edu	37	14	89049271	89049271	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC13	389874	broad.mit.edu	37	X	73524478	73524478	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC8	55596	broad.mit.edu	37	12	122958517	122958517	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC15	158866	broad.mit.edu	37	X	74598896	74598896	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31816100	31816100	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72926835	72926835	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77761363	77761363	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP106	64397	broad.mit.edu	37	15	42713058	42713058	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP64	55734	broad.mit.edu	37	20	50803613	50803613	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52704447	52704447	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147113997	147113997	+	Silent	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45985341	45985341	+	5'Flank	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF229	7772	broad.mit.edu	37	19	44944030	44944030	+	Intron	DEL	G	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74620298	74620298	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF23	7571	broad.mit.edu	37	16	71483710	71483710	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF398	57541	broad.mit.edu	37	7	148851379	148851379	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF449	203523	broad.mit.edu	37	X	134482990	134482990	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF451	26036	broad.mit.edu	37	6	57018646	57018646	+	Intron	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF470	388566	broad.mit.edu	37	19	57085574	57085574	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57193859	57193859	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF496	84838	broad.mit.edu	37	1	247473695	247473695	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22805974	22805974	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22806155	22806155	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30934886	30934886	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935348	30935348	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935354	30935354	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935951	30935951	+	Silent	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30936085	30936085	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30936096	30936096	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30936551	30936551	+	Silent	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30936612	30936612	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31038849	31038849	+	Splice_Site	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF547	284306	broad.mit.edu	37	19	57889018	57889018	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF571	51276	broad.mit.edu	37	19	38055807	38055807	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF572	137209	broad.mit.edu	37	8	125989914	125989914	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF582	147948	broad.mit.edu	37	19	56896007	56896007	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	53195	53195	+	5'Flank	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF597	146434	broad.mit.edu	37	16	3487213	3487213	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF665	79788	broad.mit.edu	37	19	53669522	53669522	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57510044	57510044	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF727	442319	broad.mit.edu	37	7	63529350	63529350	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF773	374928	broad.mit.edu	37	19	58017710	58017710	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238050785	238050785	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238053214	238053214	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238053464	238053465	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB1	54764	broad.mit.edu	37	10	126631393	126631393	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58556787	58556787	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40951932	40951932	+	RNA	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	65260617	65260617	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22322702	22322702	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22631150	22631150	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22694753	22694753	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22946714	22946714	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22963824	22963824	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28733799	28733799	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	60465944	60465944	+	RNA	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20193188	20193188	+	RNA	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20193570	20193570	+	5'Flank	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20589814	20589814	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29107616	29107616	+	Intron	SNP	A	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37185692	37185692	+	5'Flank	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25033182	25033182	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39915929	39915929	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29970516	29970516	+	Intron	DEL	C	-	-			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35316463	35316463	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	45138649	45138650	+	Intron	DEL	TC	-	-	rs34067252		TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142632319	142632319	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142662009	142662009	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143168248	143168248	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	144014034	144014034	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	144024729	144024742	+	Intron	DEL	TTTTTTTGTTGTTG	-	-	rs60249088	by1000genomes	TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	57161494	57161494	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28792757	28792757	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27708279	27708279	+	RNA	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	66021593	66021593	+	Intron	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89246710	89246710	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89309448	89309448	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	126382337	126382337	+	Silent	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180490691	180490691	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195437460	195437460	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	144833064	144833064	+	5'Flank	SNP	G	C	C			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190845788	190845788	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69313149	69313149	+	5'Flank	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	85166010	85166010	+	Intron	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	118347696	118347696	+	Intron	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	38799804	38799804	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7303884	7303884	+	RNA	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124675206	124675206	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143208661	143208661	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38407573	38407573	+	Intron	SNP	A	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63796756	63796756	+	Silent	SNP	C	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73331208	73331208	+	Intron	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66464203	66464203	+	Intron	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100142822	100142822	+	Intron	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122696284	122696284	+	5'Flank	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	80185760	80185760	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
tAKR	389932	broad.mit.edu	37	10	4915478	4915478	+	Intron	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
