Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7759057	7759057	+	Splice_Site	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AADACL3	126767	broad.mit.edu	37	1	12776440	12776440	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215818780	215818780	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66891000	66891000	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66978697	66978697	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67016539	67016539	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87229398	87229398	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87082248	87082248	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB7	22	broad.mit.edu	37	X	74318689	74318690	+	Intron	DEL	AA	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC6P1	653190	broad.mit.edu	37	16	18584142	18584142	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD13	84945	broad.mit.edu	37	13	108882324	108882327	+	Frame_Shift_Del	DEL	TCTC	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM1	3983	broad.mit.edu	37	10	116233018	116233018	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109650548	109650548	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD7	414149	broad.mit.edu	37	10	15121112	15121113	+	Intron	DNP	GA	AG	AG			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80631424	80631424	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX2	8309	broad.mit.edu	37	3	58516897	58516897	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20482260	20482260	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL6B	51412	broad.mit.edu	37	7	100244538	100244538	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR1B	10120	broad.mit.edu	37	2	98274560	98274560	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207407906	207407906	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106573214	106573214	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33534876	33534876	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33549430	33549430	+	Missense_Mutation	SNP	C	G	G	rs147732973		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33624300	33624300	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33631049	33631049	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72518094	72518095	+	Intron	DNP	GG	TT	TT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5182390	5182390	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5190277	5190277	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128864260	128864260	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28212641	28212641	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43769219	43769219	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73148812	73148812	+	3'UTR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18622356	18622356	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45725877	45725877	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH4	127	broad.mit.edu	37	4	100062612	100062612	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87531130	87531130	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT9	84803	broad.mit.edu	37	4	84516118	84516118	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1L	55057	broad.mit.edu	37	1	26663815	26663815	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK7	122481	broad.mit.edu	37	14	96890026	96890026	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP7	9465	broad.mit.edu	37	6	131486289	131486289	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKD1	221264	broad.mit.edu	37	6	109962787	109962787	+	Silent	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134260353	134260353	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B1	231	broad.mit.edu	37	7	134127462	134127462	+	3'UTR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1D1	6718	broad.mit.edu	37	7	137782631	137782631	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74284072	74284072	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58258026	58258026	+	Splice_Site	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG12	79087	broad.mit.edu	37	22	50297751	50297751	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH4	54784	broad.mit.edu	37	7	102100280	102100280	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113303476	113303476	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56191220	56191220	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38543384	38543384	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114276798	114276798	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61898827	61898827	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241448843	241448843	+	Silent	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	73941944	73941944	+	3'UTR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95599984	95599984	+	RNA	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95481859	95481859	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD32	84250	broad.mit.edu	37	5	94022207	94022207	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1A	23294	broad.mit.edu	37	6	35051100	35051100	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	6031944	6031944	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26463526	26463526	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101510293	101510293	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22249096	22249096	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA10	11199	broad.mit.edu	37	4	169049310	169049310	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA10	11199	broad.mit.edu	37	4	169105645	169105645	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA7	310	broad.mit.edu	37	10	75160471	75160471	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36634038	36634038	+	Splice_Site	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2B1	163	broad.mit.edu	37	17	33977937	33977937	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99059235	99059235	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40818215	40818215	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APH1A	51107	broad.mit.edu	37	1	150239451	150239451	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLF	200558	broad.mit.edu	37	2	68730154	68730154	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21234204	21234204	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21242677	21242677	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP8	343	broad.mit.edu	37	16	25228413	25228413	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARF5	381	broad.mit.edu	37	7	127230237	127230237	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF2	10564	broad.mit.edu	37	20	47582591	47582591	+	Intron	SNP	T	C	C	rs147041634	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24971426	24971426	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11314843	11314843	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	2986173	2986173	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART3	419	broad.mit.edu	37	4	77002949	77002949	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131414295	131414295	+	5'Flank	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197111989	197111989	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119858334	119858334	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119976740	119976740	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119977022	119977022	+	Splice_Site	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG7	10533	broad.mit.edu	37	3	11348421	11348421	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG9B	285973	broad.mit.edu	37	7	150720217	150720217	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108196179	108196179	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11B	23200	broad.mit.edu	37	3	182559797	182559797	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193201895	193201895	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42485992	42485992	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B1	490	broad.mit.edu	37	12	90036108	90036109	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10392086	10392086	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7B	540	broad.mit.edu	37	13	52544577	52544577	+	Intron	SNP	C	A	A	rs151202111	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACH1	571	broad.mit.edu	37	21	30699198	30699198	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69949060	69949060	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ1B	9031	broad.mit.edu	37	7	72883886	72883886	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBOX1	8424	broad.mit.edu	37	11	27137133	27137133	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33644806	33644806	+	Splice_Site	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	59147706	59147706	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCO2	83875	broad.mit.edu	37	11	112072759	112072759	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCR	613	broad.mit.edu	37	22	23541512	23541512	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND3	57673	broad.mit.edu	37	6	107389901	107389901	+	3'UTR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLNK	29760	broad.mit.edu	37	10	97960647	97960647	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	96075791	96075791	+	Silent	SNP	C	A	A	rs140430323	byFrequency	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112999539	112999539	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	113004182	113004182	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL3	128859	broad.mit.edu	37	20	31620940	31620940	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD7	29117	broad.mit.edu	37	16	50388478	50388478	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRPF1	7862	broad.mit.edu	37	3	9783176	9783176	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108011021	108011021	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A1	11119	broad.mit.edu	37	6	26407856	26407856	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A2	11118	broad.mit.edu	37	6	26377427	26377427	+	3'UTR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56385038	56385038	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56385040	56385040	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf33	84935	broad.mit.edu	37	13	31495730	31495730	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922505	24922505	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf53	78995	broad.mit.edu	37	17	42239276	42239278	+	In_Frame_Del	DEL	CTT	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf64	124773	broad.mit.edu	37	17	58506878	58506878	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf98	388381	broad.mit.edu	37	17	36997587	36997587	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51768909	51768909	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179364232	179364233	+	Splice_Site	DNP	GG	TT	TT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179398593	179398593	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf9	51430	broad.mit.edu	37	1	172558024	172558024	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20144727	20144727	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20269485	20269485	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73803395	73803395	+	Intron	SNP	C	A	A	rs56105159	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf57	165100	broad.mit.edu	37	2	232457843	232457843	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf65	130951	broad.mit.edu	37	2	74867251	74867251	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3P1	388503	broad.mit.edu	37	19	10160622	10160622	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf31	132001	broad.mit.edu	37	3	11887818	11887818	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf17	84103	broad.mit.edu	37	4	100434183	100434183	+	5'UTR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81283972	81283972	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf41	60684	broad.mit.edu	37	4	184614791	184614791	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf7	260436	broad.mit.edu	37	4	71099996	71099996	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf22	55322	broad.mit.edu	37	5	31532420	31532420	+	Translation_Start_Site	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf105	84830	broad.mit.edu	37	6	11768400	11768400	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf10	10665	broad.mit.edu	37	6	32260791	32260791	+	Silent	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715670	165715670	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf146	222826	broad.mit.edu	37	6	4073415	4073415	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf70	55780	broad.mit.edu	37	6	170156989	170156989	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf25	79020	broad.mit.edu	37	7	42949701	42949701	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf26	79034	broad.mit.edu	37	7	6631360	6631360	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57340806	57340806	+	Intron	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57422597	57422597	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf131	138724	broad.mit.edu	37	9	35042600	35042600	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf5	23731	broad.mit.edu	37	9	111782845	111782845	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf84	158401	broad.mit.edu	37	9	114454436	114454436	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49711135	49711135	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181754359	181754359	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40069095	40069095	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG5	27091	broad.mit.edu	37	17	64875163	64875163	+	Silent	SNP	G	A	A	rs144101002		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO1	57658	broad.mit.edu	37	12	54109682	54109682	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93065453	93065453	+	Silent	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CANT1	124583	broad.mit.edu	37	17	76989810	76989810	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN9	10753	broad.mit.edu	37	1	230933796	230933796	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPSL	133690	broad.mit.edu	37	5	35910691	35910691	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASD1	64921	broad.mit.edu	37	7	94166868	94166868	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP14	23581	broad.mit.edu	37	19	15164484	15164484	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP2	835	broad.mit.edu	37	7	142991495	142991495	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ1	844	broad.mit.edu	37	1	160160683	160160683	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105400431	105400431	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC33	80125	broad.mit.edu	37	15	74572437	74572437	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC36	339834	broad.mit.edu	37	3	49282171	49282171	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC38	120935	broad.mit.edu	37	12	96288796	96288796	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC48	79825	broad.mit.edu	37	3	128755683	128755683	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119943141	119943141	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119943143	119943143	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111336724	111336724	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC70	83446	broad.mit.edu	37	13	52439952	52439953	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32724418	32724418	+	Splice_Site	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74A	90557	broad.mit.edu	37	2	132290296	132290296	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85597313	85597313	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL15	6359	broad.mit.edu	37	17	34326003	34326003	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR3	1232	broad.mit.edu	37	3	46307221	46307221	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6A	908	broad.mit.edu	37	7	56123401	56123402	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7522158	7522158	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD177	57126	broad.mit.edu	37	19	43865562	43865562	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1L	344807	broad.mit.edu	37	3	112564576	112564576	+	5'UTR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67562812	67562812	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD38	952	broad.mit.edu	37	4	15842076	15842076	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD3E	916	broad.mit.edu	37	11	118178144	118178144	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD53	963	broad.mit.edu	37	1	111437624	111437625	+	Missense_Mutation	DNP	CG	AC	AC			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA7	83879	broad.mit.edu	37	2	174224139	174224139	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21752406	21752406	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21854832	21854832	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19747108	19747108	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63430022	63430022	+	5'UTR	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63491946	63491946	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85957602	85957602	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85964251	85964251	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176002010	176002010	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202677286	202677286	+	Splice_Site	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2A	1029	broad.mit.edu	37	9	21971108	21971108	+	Missense_Mutation	SNP	C	T	T	rs11552822		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPB	1059	broad.mit.edu	37	20	3767008	3767008	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP63	80254	broad.mit.edu	37	3	134251825	134251825	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP70	80321	broad.mit.edu	37	3	138289206	138289206	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP72	55722	broad.mit.edu	37	5	620435	620435	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR3	10878	broad.mit.edu	37	1	196762554	196762554	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21859724	21859724	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHKA	1119	broad.mit.edu	37	11	67833207	67833207	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136700830	136700830	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA3	1136	broad.mit.edu	37	15	78894042	78894042	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA9	55584	broad.mit.edu	37	4	40337915	40337915	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST1	8534	broad.mit.edu	37	11	45672159	45672159	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST5	23563	broad.mit.edu	37	16	75563211	75563211	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIC	23152	broad.mit.edu	37	19	42794391	42794391	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86905963	86905963	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCNKA	1187	broad.mit.edu	37	1	16351353	16351353	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC16A	23274	broad.mit.edu	37	16	11120823	11120823	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC3A	10143	broad.mit.edu	37	16	78061932	78061932	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC6A	93978	broad.mit.edu	37	12	8612375	8612375	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73795247	73795247	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN1	7401	broad.mit.edu	37	3	150659364	150659364	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA4	1262	broad.mit.edu	37	11	6260936	6260936	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21627541	21627541	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147092682	147092682	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103352456	103352456	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121309761	121309761	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101797531	101797531	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32154676	32154676	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70847591	70847591	+	Silent	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70850712	70850712	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70875811	70875811	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139707074	139707074	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139774713	139774713	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107910360	107910360	+	Intron	SNP	C	T	T	rs104886382		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107930917	107930917	+	Silent	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130293296	130293296	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48619959	48619959	+	Intron	DEL	A	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48620455	48620455	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61459268	61459268	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ10A	93058	broad.mit.edu	37	12	56661501	56661503	+	Intron	DEL	TCT	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA6	57094	broad.mit.edu	37	8	68396116	68396116	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA6	57094	broad.mit.edu	37	8	68430323	68430323	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB1	1360	broad.mit.edu	37	3	148563381	148563381	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB3	22849	broad.mit.edu	37	10	93851774	93851774	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB3	22849	broad.mit.edu	37	10	93897082	93897082	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207825864	207825864	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207870881	207870881	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207871034	207871034	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRBN	51185	broad.mit.edu	37	3	3214613	3214613	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP2	7180	broad.mit.edu	37	6	49667532	49667532	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT1	55790	broad.mit.edu	37	8	19276199	19276199	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT1	55790	broad.mit.edu	37	8	19278006	19278006	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113267669	113267670	+	Intron	DEL	AG	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114449153	114449153	+	5'UTR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP2BP	57325	broad.mit.edu	37	20	18126120	18126120	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80646826	80646826	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68936661	68936661	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16711541	16711541	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117431240	117431240	+	Silent	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL4A	8451	broad.mit.edu	37	13	113873232	113873232	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL9	4283	broad.mit.edu	37	4	76928455	76928455	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL9	4283	broad.mit.edu	37	4	76928476	76928476	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR2	3579	broad.mit.edu	37	2	218999752	218999752	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36156643	36156643	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBB	1536	broad.mit.edu	37	X	37668873	37668873	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP20A1	57404	broad.mit.edu	37	2	204154501	204154501	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72278547	72278547	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAXX	1616	broad.mit.edu	37	6	33287889	33287891	+	In_Frame_Del	DEL	TCT	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZL	1618	broad.mit.edu	37	3	16638346	16638346	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	122075649	122075649	+	Translation_Start_Site	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4	26094	broad.mit.edu	37	14	73418670	73418670	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36779986	36779986	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110653260	110653260	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDO	8528	broad.mit.edu	37	6	110734386	110734386	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX11	1663	broad.mit.edu	37	12	31255978	31255978	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX20	11218	broad.mit.edu	37	1	112309029	112309029	+	Silent	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX23	9416	broad.mit.edu	37	12	49226183	49226183	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117228516	117228517	+	Intron	DEL	AG	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	186015948	186015948	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHFRL1	200895	broad.mit.edu	37	3	93781815	93781815	+	5'Flank	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX36	170506	broad.mit.edu	37	3	153998548	153998548	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	435891	435891	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC2	84925	broad.mit.edu	37	3	122545973	122545973	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38158563	38158563	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1497609	1497609	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX5	1749	broad.mit.edu	37	7	96650002	96650002	+	3'UTR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124325804	124325804	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21760498	21760498	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52360842	52360842	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20974538	20974538	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI1	27019	broad.mit.edu	37	9	34514443	34514443	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183608212	183608212	+	Intron	SNP	T	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183608218	183608218	+	Intron	SNP	T	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25469966	25469966	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOC2A	8448	broad.mit.edu	37	16	30017728	30017728	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169122864	169122864	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25203308	25203309	+	Intron	DNP	TG	CT	CT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154645512	154645512	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35129919	35129919	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64061906	64061906	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105393278	105393278	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9784075	9784075	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117310559	117310559	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29044371	29044371	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56458660	56458660	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUT	1854	broad.mit.edu	37	15	48624496	48624496	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95625227	95625227	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71747970	71747970	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137813704	137813704	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108327004	108327004	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25718935	25718935	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECHDC2	55268	broad.mit.edu	37	1	53370711	53370711	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECM1	1893	broad.mit.edu	37	1	150482302	150482302	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55269312	55269312	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2S3	1968	broad.mit.edu	37	X	24094891	24094891	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4A2	1974	broad.mit.edu	37	3	186501348	186501348	+	5'Flank	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79383345	79383345	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMID2	136227	broad.mit.edu	37	7	101045058	101045058	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71510376	71510376	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP6	133121	broad.mit.edu	37	4	185037979	185037979	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89390951	89390951	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89448399	89448399	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66197696	66197696	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142563859	142563859	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX2	2053	broad.mit.edu	37	8	27402090	27402090	+	3'UTR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC6	2074	broad.mit.edu	37	10	50740774	50740774	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERI3	79033	broad.mit.edu	37	1	44773934	44773934	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23716211	23716211	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRB	2103	broad.mit.edu	37	14	76905848	76905848	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216741469	216741469	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC2	132884	broad.mit.edu	37	4	5642338	5642338	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	564606	564606	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169511451	169511451	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F9	2158	broad.mit.edu	37	X	138613041	138613041	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F9	2158	broad.mit.edu	37	X	138619367	138619367	+	Intron	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM115A	9747	broad.mit.edu	37	7	143573604	143573604	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM134A	79137	broad.mit.edu	37	2	220045483	220045483	+	Intron	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM183B	340286	broad.mit.edu	37	7	38725214	38725214	+	3'UTR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM194A	131831	broad.mit.edu	37	3	150403468	150403468	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62273424	62273425	+	Intron	INS	-	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A4	151647	broad.mit.edu	37	3	68788366	68788366	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34149563	34149563	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34961677	34961677	+	Silent	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM53C	51307	broad.mit.edu	37	5	137681298	137681298	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190203565	190203565	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190250818	190250819	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187540406	187540406	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92523017	92523017	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92533659	92533659	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127704782	127704782	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157737268	157737268	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157488604	157488604	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124987322	124987323	+	Intron	DNP	GG	TT	TT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125072957	125072957	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125078560	125078560	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137717584	137717584	+	Intron	SNP	G	T	T	rs59397905		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFBP2	83888	broad.mit.edu	37	4	15964725	15964725	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP15	23307	broad.mit.edu	37	9	115969397	115969397	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9	11328	broad.mit.edu	37	7	33014284	33014285	+	Missense_Mutation	DNP	GG	TT	TT	rs143841637		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLAD1	80308	broad.mit.edu	37	1	154956480	154956480	+	Missense_Mutation	SNP	G	A	A	rs1054257		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152326246	152326246	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152278890	152278890	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152281932	152281932	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128493723	128493723	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171254341	171254341	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO2	2327	broad.mit.edu	37	1	171154916	171154916	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXC2	2303	broad.mit.edu	37	16	86602418	86602418	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN3	1112	broad.mit.edu	37	14	89756743	89756743	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD5	84978	broad.mit.edu	37	15	44166263	44166263	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSIP1	161835	broad.mit.edu	37	15	40034009	40034009	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD1	55783	broad.mit.edu	37	16	71319117	71319117	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD6	53826	broad.mit.edu	37	11	117712750	117712753	+	Intron	DEL	AAAC	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABPB2	126626	broad.mit.edu	37	1	151090006	151090006	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46980938	46980938	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27185030	27185030	+	Intron	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151131056	151131058	+	In_Frame_Del	DEL	GTT	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89907909	89907909	+	Silent	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE10	643832	broad.mit.edu	37	X	49173798	49173798	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L2	246176	broad.mit.edu	37	17	34072118	34072118	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAST	2520	broad.mit.edu	37	17	39871692	39871692	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44187364	44187364	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEFT	115557	broad.mit.edu	37	12	58008761	58008761	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61958348	61958348	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42719054	42719054	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP8	155038	broad.mit.edu	37	7	150174229	150174229	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121748105	121748105	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYAT	10249	broad.mit.edu	37	11	58477334	58477334	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB1	10691	broad.mit.edu	37	1	29037045	29037045	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB2	26205	broad.mit.edu	37	20	62250696	62250696	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNA13	10672	broad.mit.edu	37	17	63052483	63052483	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155747565	155747565	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR107	57720	broad.mit.edu	37	9	132854594	132854594	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR31	2853	broad.mit.edu	37	6	167570484	167570484	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAP2	9402	broad.mit.edu	37	22	40365465	40365465	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11716594	11716594	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105623600	105623600	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94693482	94693482	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9858108	9858108	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM3	2913	broad.mit.edu	37	7	86416287	86416287	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126079199	126079199	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSK3B	2932	broad.mit.edu	37	3	119595216	119595216	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSR	2936	broad.mit.edu	37	8	30538312	30538312	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM5	2949	broad.mit.edu	37	1	110260049	110260049	+	3'UTR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTP1	2950	broad.mit.edu	37	11	67353817	67353817	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27539839	27539842	+	Intron	DEL	AGAG	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP10	85865	broad.mit.edu	37	7	90014232	90014232	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO2	51179	broad.mit.edu	37	1	119925704	119925704	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBG1	3047	broad.mit.edu	37	11	5269700	5269701	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCCS	3052	broad.mit.edu	37	X	11136755	11136755	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262453	45262453	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45267412	45267412	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18914169	18914169	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31576778	31576778	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31597204	31597206	+	In_Frame_Del	DEL	GAG	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93184926	93184926	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65392106	65392106	+	Intron	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28375308	28375308	+	Splice_Site	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28463580	28463580	+	Intron	SNP	C	A	A	rs60214216		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC4	26091	broad.mit.edu	37	10	69714447	69714447	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91816380	91816380	+	Silent	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91843574	91843574	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGFAC	3083	broad.mit.edu	37	4	3444491	3444491	+	Silent	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3J	8356	broad.mit.edu	37	6	27861104	27861104	+	5'Flank	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186009049	186009049	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGB2	3148	broad.mit.edu	37	4	174254163	174254163	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMSD	284293	broad.mit.edu	37	18	61620724	61620724	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF1A	6927	broad.mit.edu	37	12	121434056	121434056	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF1A	6927	broad.mit.edu	37	12	121434285	121434285	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB13	10481	broad.mit.edu	37	17	46804191	46804191	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD10	3236	broad.mit.edu	37	2	176981615	176981615	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS2ST1	9653	broad.mit.edu	37	1	87511285	87511285	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26043928	26043928	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD11B1	3290	broad.mit.edu	37	1	209880509	209880509	+	Intron	SNP	A	G	G	rs72201436		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90B3P	343477	broad.mit.edu	37	1	92109251	92109252	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3E	285242	broad.mit.edu	37	3	183823873	183823873	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYOU1	10525	broad.mit.edu	37	11	118926013	118926013	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT46	56912	broad.mit.edu	37	11	118416217	118416219	+	Intron	DEL	GAA	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65684163	65684163	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47121275	47121275	+	Intron	SNP	T	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117131683	117131683	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18RAP	8807	broad.mit.edu	37	2	103061680	103061680	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F8	27177	broad.mit.edu	37	2	113785566	113785566	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RL2	8808	broad.mit.edu	37	2	102842540	102842540	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMT	10989	broad.mit.edu	37	2	86371860	86371860	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100949991	100949991	+	Splice_Site	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62321679	62321681	+	Intron	DEL	CTT	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS1	26173	broad.mit.edu	37	7	1527608	1527608	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO9	55705	broad.mit.edu	37	1	201822269	201822269	+	Intron	DEL	T	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCE	23288	broad.mit.edu	37	7	2606810	2606810	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75954410	75954410	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX2	153572	broad.mit.edu	37	5	2748676	2748676	+	Silent	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISM2	145501	broad.mit.edu	37	14	77948824	77948824	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68596157	68596157	+	Silent	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182390005	182390005	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15648260	15648260	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15689099	15689099	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA9	3680	broad.mit.edu	37	3	37567630	37567630	+	Intron	SNP	C	A	A	rs79861835	byFrequency;by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30500399	30500399	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187533538	187533538	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB8	3696	broad.mit.edu	37	7	20444439	20444439	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156608196	156608196	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156655369	156655369	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33633091	33633091	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH1	56704	broad.mit.edu	37	8	75156958	75156958	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAZ	23254	broad.mit.edu	37	1	15438970	15438970	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB1	3745	broad.mit.edu	37	20	47990102	47990102	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	120373154	120373154	+	Intron	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163253407	163253407	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19384093	19384093	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215342473	215342473	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78674559	78674559	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB2	10242	broad.mit.edu	37	3	178560320	178560320	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB4	27345	broad.mit.edu	37	12	70793936	70793936	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELC2	143888	broad.mit.edu	37	11	108357194	108357194	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELR3	11015	broad.mit.edu	37	22	38875737	38875738	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5D	8284	broad.mit.edu	37	Y	21894530	21894530	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142643203	142643203	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43896034	43896034	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0495	57212	broad.mit.edu	37	1	3662521	3662521	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123122323	123122323	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118221794	118221794	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118242279	118242279	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1267	284058	broad.mit.edu	37	17	44172206	44172206	+	Intron	DEL	A	-	-	rs66674327		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1377	57562	broad.mit.edu	37	11	101833351	101833351	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	93943841	93943841	+	5'Flank	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1462	57608	broad.mit.edu	37	10	30317994	30317994	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138601460	138601460	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1598	57698	broad.mit.edu	37	10	118738949	118738949	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13B	23303	broad.mit.edu	37	8	28988082	28988082	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91479122	91479122	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39734124	39734124	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200973843	200973843	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51902347	51902347	+	Silent	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55270401	55270401	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55341802	55341803	+	3'UTR	DNP	CC	AG	AG			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36353335	36353335	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL2	11275	broad.mit.edu	37	4	166231931	166231931	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241712923	241712923	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	134981838	134981838	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123014587	123014587	+	5'UTR	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT4	3851	broad.mit.edu	37	12	53201984	53201984	+	Intron	DEL	C	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-12	83755	broad.mit.edu	37	17	39280289	39280289	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP9-9	81870	broad.mit.edu	37	17	39389214	39389214	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42159028	42159028	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54866743	54866743	+	3'UTR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7037598	7037598	+	Silent	SNP	G	C	C	rs144105602	byFrequency;by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7038804	7038804	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129592005	129592005	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112435411	112435411	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133942270	133942270	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133944216	133944216	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1	23367	broad.mit.edu	37	5	154183274	154183274	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1	23367	broad.mit.edu	37	5	154185288	154185288	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4	113251	broad.mit.edu	37	12	50867819	50867819	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4	113251	broad.mit.edu	37	12	50867905	50867905	+	Silent	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBXCOR1	390598	broad.mit.edu	37	15	68123280	68123280	+	Intron	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE3A	353142	broad.mit.edu	37	1	152595480	152595480	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE3D	84648	broad.mit.edu	37	1	152552269	152552269	+	Silent	SNP	G	T	T	rs146594158		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LECT1	11061	broad.mit.edu	37	13	53307311	53307311	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPREL1	55214	broad.mit.edu	37	3	189681780	189681780	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71977686	71977686	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL1	340596	broad.mit.edu	37	X	111914413	111914413	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX5	64211	broad.mit.edu	37	12	113909175	113909175	+	Silent	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIF	3976	broad.mit.edu	37	22	30639730	30639730	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA3	11026	broad.mit.edu	37	19	54800032	54800032	+	3'UTR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442459	442459	broad.mit.edu	37	X	98974997	98974997	+	RNA	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC642846	642846	broad.mit.edu	37	12	9464219	9464219	+	Intron	SNP	G	T	T	rs116059366	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727924	727924	broad.mit.edu	37	15	22297706	22297706	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160999728	160999728	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62542642	62542642	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62778449	62778449	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99771695	99771695	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105510247	105510247	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141083400	141083400	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46884069	46884069	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137279	40137279	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC69	100130742	broad.mit.edu	37	8	92169904	92169904	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70339177	70339177	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70446128	70446128	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70502311	70502311	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70542054	70542054	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140993918	140993919	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED2	10916	broad.mit.edu	37	X	54841708	54841708	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K3	8491	broad.mit.edu	37	2	39515294	39515294	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH10	162333	broad.mit.edu	37	17	60821890	60821890	+	Splice_Site	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119750654	119750654	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBNL1	4154	broad.mit.edu	37	3	152132887	152132887	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBNL1	4154	broad.mit.edu	37	3	152173406	152173406	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM5	4174	broad.mit.edu	37	22	35812721	35812721	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDFI	4188	broad.mit.edu	37	6	41613837	41613837	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151094924	151094924	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151097855	151097855	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42839471	42839471	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFF	56947	broad.mit.edu	37	2	228212018	228212018	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC42105	167359	broad.mit.edu	37	5	43245925	43245925	+	Silent	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICALL1	85377	broad.mit.edu	37	22	38333720	38333720	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKL2	57496	broad.mit.edu	37	16	14345718	14345718	+	Splice_Site	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKX	283078	broad.mit.edu	37	10	27964308	27964308	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH3	27030	broad.mit.edu	37	14	75498773	75498773	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168344614	168344614	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154834521	154834521	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP3	4314	broad.mit.edu	37	11	102709737	102709737	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50553740	50553740	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10	4343	broad.mit.edu	37	1	113232258	113232258	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC2	9902	broad.mit.edu	37	17	60744809	60744809	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A12	54860	broad.mit.edu	37	11	60269496	60269496	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60160052	60160052	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60231853	60231853	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A3	932	broad.mit.edu	37	11	59828682	59828682	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH3	4437	broad.mit.edu	37	5	80040324	80040324	+	Splice_Site	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSR1	4481	broad.mit.edu	37	8	15967555	15967555	+	3'UTR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRB3	253827	broad.mit.edu	37	12	65762711	65762711	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1R	4486	broad.mit.edu	37	3	49935063	49935063	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR15	22909	broad.mit.edu	37	15	31198066	31198066	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9003444	9003444	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9048299	9048299	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9063443	9063443	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9090970	9090970	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71346973	71346973	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3240108	3240108	+	Silent	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81101521	81101521	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10206756	10206756	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10214506	10214506	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108147287	108147287	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108220459	108220459	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10296518	10296518	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL10	93408	broad.mit.edu	37	7	101266302	101266302	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL12B	103910	broad.mit.edu	37	18	3277806	3277806	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52697645	52697645	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA16	79612	broad.mit.edu	37	13	41941683	41941683	+	Silent	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPB	63908	broad.mit.edu	37	20	23362046	23362046	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19967974	19967974	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78400688	78400688	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78515929	78515929	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	146217021	146217021	+	Intron	SNP	A	G	G	rs146388681	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	146217039	146217039	+	Intron	SNP	G	C	C	rs139739620	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAN	1463	broad.mit.edu	37	19	19337983	19337983	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAN	1463	broad.mit.edu	37	19	19359474	19359474	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5L	57701	broad.mit.edu	37	12	50190474	50190474	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5L	57701	broad.mit.edu	37	12	50197683	50197683	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDOR1	27158	broad.mit.edu	37	9	140110302	140110302	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	118975786	118975786	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA4	4697	broad.mit.edu	37	7	10979714	10979714	+	5'UTR	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFB5	4711	broad.mit.edu	37	3	179336201	179336201	+	Splice_Site	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170327885	170327885	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45173531	45173531	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73566308	73566308	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	21137166	21137166	+	5'Flank	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP11	204801	broad.mit.edu	37	19	56312864	56312864	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56459662	56459662	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101098849	101098849	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL10	79954	broad.mit.edu	37	2	10712193	10712193	+	3'UTR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL4	8715	broad.mit.edu	37	18	31537511	31537511	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117657859	117657859	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120463057	120463057	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120468434	120468434	+	Splice_Site	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120510149	120510149	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS2	4862	broad.mit.edu	37	2	101582093	101582093	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP4	261734	broad.mit.edu	37	1	6007107	6007107	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32463282	32463282	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32599526	32599526	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16337858	16337858	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156845991	156845991	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMA1	4926	broad.mit.edu	37	11	71716300	71716300	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	154002314	154002314	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101817730	101817730	+	RNA	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OASL	8638	broad.mit.edu	37	12	121461898	121461898	+	Silent	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102302572	102302572	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLR1	4973	broad.mit.edu	37	12	10319681	10319681	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123900769	123900769	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57995801	57995801	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10T2	128360	broad.mit.edu	37	1	158368632	158368632	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14C36	127066	broad.mit.edu	37	1	248512233	248512233	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247920993	247920993	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T34	127068	broad.mit.edu	37	1	248737810	248737811	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C11	219429	broad.mit.edu	37	11	55371502	55371502	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D9	390199	broad.mit.edu	37	11	59282816	59282816	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20249408	20249408	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22414324	22414324	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20611943	20611943	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55406718	55406718	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4Q3	441669	broad.mit.edu	37	14	20216386	20216386	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S1	256148	broad.mit.edu	37	11	48327669	48327669	+	5'Flank	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S2	219431	broad.mit.edu	37	11	55418706	55418706	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D13	390142	broad.mit.edu	37	11	55541459	55541459	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563697	55563697	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5I1	10798	broad.mit.edu	37	11	55703819	55703819	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55595053	55595053	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M1	390168	broad.mit.edu	37	11	56380109	56380109	+	Silent	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5P3	120066	broad.mit.edu	37	11	7846762	7846763	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C68	403284	broad.mit.edu	37	12	55886576	55886576	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6M1	390261	broad.mit.edu	37	11	123676203	123676203	+	Silent	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N2	81442	broad.mit.edu	37	1	158747483	158747483	+	5'Flank	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6X1	390260	broad.mit.edu	37	11	123624624	123624624	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G2	390882	broad.mit.edu	37	19	9213879	9213879	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K1	390157	broad.mit.edu	37	11	56113826	56113826	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q2	219957	broad.mit.edu	37	11	57958874	57958874	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC6L	23594	broad.mit.edu	37	16	46727136	46727136	+	Intron	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OS9	10956	broad.mit.edu	37	12	58114582	58114582	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76783668	76783668	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOL1	131149	broad.mit.edu	37	3	161217016	161217016	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOL1	131149	broad.mit.edu	37	3	161221575	161221575	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP3	347741	broad.mit.edu	37	17	72929656	72929656	+	5'Flank	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX7	5027	broad.mit.edu	37	12	121592673	121592673	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17555220	17555220	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9520240	9520240	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176681251	176681251	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176809471	176809471	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25455035	25455035	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161969900	161969900	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91133196	91133196	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	4968083	4968083	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5605402	5605402	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55566686	55566686	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55913025	55913025	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	31144176	31144176	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67477676	67477676	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140249939	140249939	+	Silent	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140215324	140215324	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140712208	140712208	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB2	56103	broad.mit.edu	37	5	140740473	140740473	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142537154	142537154	+	3'UTR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66713328	66713328	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145015970	145015970	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149312269	149312269	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA2	5161	broad.mit.edu	37	4	96762352	96762352	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD8	118987	broad.mit.edu	37	10	119044815	119044815	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5	5830	broad.mit.edu	37	12	7361324	7361324	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGA3	643834	broad.mit.edu	37	11	60971721	60971721	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP3	114771	broad.mit.edu	37	1	153275173	153275173	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR1	221692	broad.mit.edu	37	6	13206250	13206250	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21A	51317	broad.mit.edu	37	11	45955606	45955607	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB2	90102	broad.mit.edu	37	3	111688727	111688727	+	Missense_Mutation	SNP	G	A	A	rs140319291		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHYHD1	254295	broad.mit.edu	37	9	131689416	131689416	+	Missense_Mutation	SNP	G	T	T	rs17481121		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI16	221476	broad.mit.edu	37	6	36931594	36931594	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGK	10026	broad.mit.edu	37	1	77685114	77685114	+	Translation_Start_Site	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98369361	98369361	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39584342	39584342	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106515241	106515241	+	Missense_Mutation	SNP	C	A	A	rs143259740	byFrequency	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRA	29992	broad.mit.edu	37	7	99971201	99971201	+	5'UTR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94301943	94301943	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51889988	51889988	+	Silent	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKLR	5313	broad.mit.edu	37	1	155269991	155269991	+	Missense_Mutation	SNP	G	T	T	rs8177962	byFrequency	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA1A	51365	broad.mit.edu	37	3	119336857	119336857	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4C	8605	broad.mit.edu	37	19	48603247	48603247	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160807954	160807954	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155211953	155211953	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4B	153478	broad.mit.edu	37	5	157021	157021	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161132127	161132127	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161157957	161157957	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD2	5352	broad.mit.edu	37	3	145828089	145828089	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD3	8985	broad.mit.edu	37	7	100855511	100855511	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20534524	20534524	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118314956	118314956	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84622798	84622798	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43147866	43147866	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F1	5451	broad.mit.edu	37	1	167334748	167334748	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39472830	39472830	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23886435	23886435	+	Silent	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81693091	81693091	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203014952	203014952	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIB	5479	broad.mit.edu	37	15	64448275	64448275	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIF	10105	broad.mit.edu	37	10	81112224	81112224	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF1	65121	broad.mit.edu	37	1	12854069	12854069	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAME	23532	broad.mit.edu	37	22	22892503	22892503	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM11	56981	broad.mit.edu	37	11	45117285	45117285	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522300	23522300	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69009216	69009216	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE1	144165	broad.mit.edu	37	12	42853951	42853951	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT10	90826	broad.mit.edu	37	4	148605077	148605077	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93605211	93605211	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS12	8492	broad.mit.edu	37	4	119259402	119259402	+	Silent	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSAP	5660	broad.mit.edu	37	10	73590956	73590956	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43233937	43233937	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43233974	43233974	+	Missense_Mutation	SNP	C	T	T	rs151272583		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43243222	43243222	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43430884	43430884	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43520124	43520124	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43441197	43441197	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43269787	43269787	+	5'UTR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87060802	87060802	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME4	23198	broad.mit.edu	37	2	54115823	54115823	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSPC1	55269	broad.mit.edu	37	13	20346466	20346466	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209358218	209358218	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTN	5764	broad.mit.edu	37	7	136939605	136939605	+	Splice_Site	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPLA	9200	broad.mit.edu	37	10	17636166	17636166	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87691181	87691181	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87730931	87730931	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN3	5774	broad.mit.edu	37	9	112145676	112145676	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRA	5786	broad.mit.edu	37	20	3001899	3001899	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70953392	70953393	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70963390	70963390	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70970274	70970274	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8465336	8465336	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157691527	157691527	+	Intron	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	158007135	158007135	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	158325541	158325541	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121637945	121637945	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM1	9698	broad.mit.edu	37	1	31405941	31405941	+	3'UTR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL1	5818	broad.mit.edu	37	11	119535730	119535732	+	In_Frame_Del	DEL	CTT	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL2	5819	broad.mit.edu	37	19	45377124	45377124	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYDC2	152138	broad.mit.edu	37	3	191179090	191179090	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGM	5837	broad.mit.edu	37	11	64514076	64514076	+	3'UTR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158946589	158946589	+	3'UTR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRSL1	55278	broad.mit.edu	37	6	107097159	107097159	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB37	326624	broad.mit.edu	37	17	72741392	72741392	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB6B	51560	broad.mit.edu	37	3	133560607	133560607	+	Intron	SNP	C	T	T	rs146521230	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABL3	285282	broad.mit.edu	37	3	120461196	120461196	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1P	83956	broad.mit.edu	37	12	45458198	45458198	+	RNA	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85774492	85774492	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAMP3	10268	broad.mit.edu	37	7	45216911	45216911	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP2B	5912	broad.mit.edu	37	3	152880634	152880634	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173913389	173913389	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEFL1	51195	broad.mit.edu	37	17	38349661	38349661	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1C	255426	broad.mit.edu	37	5	179555436	179555436	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80409657	80409657	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM42	79171	broad.mit.edu	37	19	36122121	36122121	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM6	10180	broad.mit.edu	37	3	50096086	50096086	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBPMS	11030	broad.mit.edu	37	8	30332327	30332327	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCOR2	283248	broad.mit.edu	37	11	63681923	63681923	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCSD1	92241	broad.mit.edu	37	1	167654682	167654682	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103252100	103252100	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103338523	103338523	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC3	5983	broad.mit.edu	37	13	34400124	34400124	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108477253	108477253	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS13	6003	broad.mit.edu	37	1	192613592	192613592	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49582335	49582335	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104898361	104898361	+	Silent	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105105650	105105650	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIN1	9610	broad.mit.edu	37	11	66100057	66100057	+	Missense_Mutation	SNP	T	A	A	rs151239250		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPK1	8737	broad.mit.edu	37	6	3111188	3111188	+	Silent	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31410834	31410835	+	Intron	DEL	AA	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78357408	78357408	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77542310	77542310	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94486259	94486259	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117665433	117665435	+	Intron	DEL	AAG	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10467521	10467521	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL30	6156	broad.mit.edu	37	8	99054972	99054972	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA6	27330	broad.mit.edu	37	X	83374966	83374966	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213277748	213277748	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTN	126638	broad.mit.edu	37	1	152127623	152127623	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSAD2	91543	broad.mit.edu	37	2	7018220	7018220	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSF1	51773	broad.mit.edu	37	11	77377926	77377926	+	3'UTR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108995804	108995804	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSU1	6251	broad.mit.edu	37	10	16635592	16635592	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67776792	67776792	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC3A	10900	broad.mit.edu	37	17	42392409	42392409	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93026929	93026929	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237756789	237756789	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33855076	33855076	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51175198	51175198	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169644499	169644499	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92735270	92735270	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB1	6304	broad.mit.edu	37	3	18390976	18390976	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB1	6304	broad.mit.edu	37	3	18462169	18462169	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200193403	200193403	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50897899	50897899	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD2	152579	broad.mit.edu	37	4	54231838	54231838	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCLT1	132320	broad.mit.edu	37	4	129886314	129886314	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62049884	62049884	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52159593	52159593	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52200939	52200939	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELE	6401	broad.mit.edu	37	1	169702626	169702626	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169580950	169580950	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4D	10507	broad.mit.edu	37	9	92007407	92007407	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115783221	115783221	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPN1	57190	broad.mit.edu	37	1	26135289	26135289	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55863581	55863581	+	3'UTR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT6	23157	broad.mit.edu	37	X	118771148	118771148	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA1	5265	broad.mit.edu	37	14	94849303	94849303	+	Missense_Mutation	SNP	C	A	A	rs28931568		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61259538	61259538	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61562431	61562431	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61569861	61569861	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61306561	61306561	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE1	5054	broad.mit.edu	37	7	100771538	100771538	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESTD1	91404	broad.mit.edu	37	2	180014052	180014052	+	Missense_Mutation	SNP	C	G	G	rs145174802	byFrequency	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42530885	42530885	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135140162	135140162	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26688944	26688944	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26771488	26771489	+	Intron	DNP	CA	AG	AG			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7409776	7409776	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS5	6430	broad.mit.edu	37	14	70237106	70237106	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGSM1	129049	broad.mit.edu	37	22	25301259	25301259	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC1	6464	broad.mit.edu	37	1	154936419	154936422	+	Intron	DEL	GGAA	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52000278	52000278	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC1	6614	broad.mit.edu	37	20	3675457	3675457	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72190356	72190356	+	Intron	SNP	C	T	T	rs79802562	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48559802	48559802	+	Silent	SNP	G	A	A	rs150609105	byFrequency;by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A9	56996	broad.mit.edu	37	7	100451908	100451908	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43262343	43262343	+	Silent	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22384370	22384370	+	Silent	SNP	C	T	T	rs144984406		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22399127	22399127	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A15	55356	broad.mit.edu	37	1	116577934	116577934	+	Silent	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A7	10864	broad.mit.edu	37	6	43267197	43267197	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A8	9376	broad.mit.edu	37	11	62782097	62782097	+	Splice_Site	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19665861	19665861	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92307886	92307886	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A2	6514	broad.mit.edu	37	3	170744601	170744601	+	5'UTR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A4	55089	broad.mit.edu	37	12	47172453	47172453	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75708783	75708783	+	Intron	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	76047884	76047884	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A3	6526	broad.mit.edu	37	21	35468722	35468722	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20657792	20657792	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40397381	40397381	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO4A1	28231	broad.mit.edu	37	20	61296406	61296406	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98773983	98773983	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20523954	20523954	+	Intron	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1B	27127	broad.mit.edu	37	22	45782818	45782819	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70442641	70442641	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP25	6616	broad.mit.edu	37	20	10258460	10258460	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SON	6651	broad.mit.edu	37	21	34924172	34924172	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231112873	231112873	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123593822	123593822	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142803866	142803866	+	5'UTR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA13	221178	broad.mit.edu	37	13	24864909	24864909	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35773914	35773914	+	Intron	SNP	T	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16260605	16260605	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK7	84651	broad.mit.edu	37	5	147693701	147693701	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR1B	6699	broad.mit.edu	37	1	153005191	153005191	+	3'UTR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131346727	131346727	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54852008	54852008	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRFBP1	153443	broad.mit.edu	37	5	121355925	121355925	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64488712	64488712	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH2	85464	broad.mit.edu	37	17	28004838	28004838	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSRP1	6749	broad.mit.edu	37	11	57102589	57102589	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99786548	99786548	+	Silent	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP1	26228	broad.mit.edu	37	4	68449312	68449312	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIL	6491	broad.mit.edu	37	1	47765719	47765719	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK19	8859	broad.mit.edu	37	6	31940267	31940267	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON2	85439	broad.mit.edu	37	14	81744495	81744495	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA8	346673	broad.mit.edu	37	7	134936486	134936486	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31571788	31571788	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31585496	31585496	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT5H	6829	broad.mit.edu	37	19	39959644	39959644	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149879215	149879215	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113139550	113139550	+	Splice_Site	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113228273	113228273	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29864219	29864219	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152462490	152462490	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152464721	152464721	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152464724	152464724	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ1	8867	broad.mit.edu	37	21	34015817	34015817	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT16	83851	broad.mit.edu	37	14	62536588	62536588	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT2	127833	broad.mit.edu	37	1	202568477	202568477	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123969979	123969979	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TADA2A	6871	broad.mit.edu	37	17	35830677	35830677	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1A	9015	broad.mit.edu	37	1	222734835	222734835	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120772822	120772822	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D2B	23102	broad.mit.edu	37	15	78295617	78295617	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D2	55357	broad.mit.edu	37	9	100983155	100983155	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115117614	115117614	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX4	9496	broad.mit.edu	37	17	59556190	59556190	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP1	6950	broad.mit.edu	37	6	160200623	160200623	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD4	7004	broad.mit.edu	37	12	3129934	3129934	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX2	55852	broad.mit.edu	37	17	62270815	62270815	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133483666	133483666	+	Intron	DEL	C	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGDS	23483	broad.mit.edu	37	13	95230903	95230903	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92200519	92200519	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM7	116179	broad.mit.edu	37	15	43574190	43574190	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133953640	133953640	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	72069520	72069520	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11486905	11486905	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11632988	11632988	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIA1	7072	broad.mit.edu	37	2	70457967	70457967	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMM50	92609	broad.mit.edu	37	19	39977153	39977153	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAG	27283	broad.mit.edu	37	6	54219225	54219225	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476971	120476971	+	3'UTR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR6	10333	broad.mit.edu	37	4	38830606	38830606	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMBIM4	51643	broad.mit.edu	37	12	66531693	66531693	+	3'UTR	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132A	54972	broad.mit.edu	37	11	60698117	60698117	+	Silent	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM150C	441027	broad.mit.edu	37	4	83406886	83406886	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM176A	55365	broad.mit.edu	37	7	150498728	150498728	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM89	440955	broad.mit.edu	37	3	48658432	48658432	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68928292	68928292	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS2	7113	broad.mit.edu	37	21	42870034	42870034	+	Intron	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29709922	29709922	+	Missense_Mutation	SNP	C	A	A	rs141015646	byFrequency;by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC4	84899	broad.mit.edu	37	13	101316583	101316583	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF11	8600	broad.mit.edu	37	13	43180567	43180567	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175046689	175046689	+	Silent	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6B	23112	broad.mit.edu	37	22	40661743	40661743	+	Silent	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175355468	175355468	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218683451	218683451	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR1AIP2	163590	broad.mit.edu	37	1	179834019	179834019	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42694687	42694687	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579377	7579377	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113710388	113710388	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144462959	144462959	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186287681	186287681	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186292815	186292815	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186315294	186315294	+	Silent	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10969197	10969197	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF6	7189	broad.mit.edu	37	11	36511491	36511491	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF6	7189	broad.mit.edu	37	11	36520261	36520261	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAT1	50852	broad.mit.edu	37	3	108572364	108572364	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM29	23650	broad.mit.edu	37	11	120007970	120007970	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14364713	14364714	+	Intron	INS	-	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111195283	111195283	+	Missense_Mutation	SNP	G	T	T	rs143012451	byFrequency	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73230719	73230719	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73442736	73442736	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116617216	116617216	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116631936	116631936	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142612069	142612069	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768670	31768670	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSIX	9383	broad.mit.edu	37	X	73040614	73040614	+	RNA	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC17	55761	broad.mit.edu	37	11	43423014	43423014	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117619347	117619347	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTR	7276	broad.mit.edu	37	18	29173044	29173044	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	88911103	88911103	+	5'UTR	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19486759	19486759	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN7	26043	broad.mit.edu	37	3	196088762	196088762	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70504767	70504767	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70504773	70504773	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B28	54490	broad.mit.edu	37	4	70155317	70155317	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41746639	41746639	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33475407	33475407	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17519711	17519711	+	Missense_Mutation	SNP	C	A	A	rs142751309	byFrequency;by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216172398	216172398	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216256812	216256812	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216260106	216260106	+	Silent	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216371755	216371756	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57641436	57641436	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57641688	57641688	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTS2D	257313	broad.mit.edu	37	3	191000000	191000000	+	5'UTR	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTS2	10911	broad.mit.edu	37	1	7910884	7910884	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31917452	31917452	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37232939	37232939	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37233346	37233346	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	48980478	48980478	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	101465387	101465387	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	37618535	37618535	+	IGR	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45536021	45536021	+	IGR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4662005	4662005	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48631967	48631967	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49120435	49120435	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49854864	49854864	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55059465	55059465	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58660308	58660308	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90017090	90017090	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90849479	90849479	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98436546	98436546	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	20094548	20094548	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	28717851	28717851	+	IGR	DEL	T	-	-	rs73089627	byFrequency;by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	79187374	79187374	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80615944	80615944	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	94915458	94915458	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111605182	111605182	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19955582	19955582	+	IGR	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79484358	79484358	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19413088	19413088	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20265082	20265082	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20996153	20996153	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	24219555	24219555	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25900972	25900972	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52754894	52754894	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95098484	95098484	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31125009	31125009	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79529665	79529665	+	IGR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	89533289	89533289	+	IGR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	18026900	18026900	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33490805	33490805	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	16520288	16520288	+	IGR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	34292171	34292171	+	IGR	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39421522	39421522	+	IGR	SNP	T	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	12671251	12671251	+	IGR	DEL	G	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	14975407	14975407	+	IGR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22499799	22499800	+	IGR	DNP	GG	TT	TT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53507756	53507756	+	IGR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	56407206	56407206	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106434413	106434413	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	119158052	119158052	+	IGR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12907186	12907186	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	147314109	147314109	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903795	148903795	+	IGR	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149065376	149065376	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159568712	159568712	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159569030	159569030	+	IGR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79215249	79215250	+	IGR	DNP	GG	TT	TT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79215409	79215409	+	IGR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16348041	16348041	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17340493	17340493	+	IGR	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17341268	17341268	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	32530127	32530127	+	IGR	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107579809	107579809	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127314957	127314957	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132383933	132383933	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162360249	162360249	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	184125963	184125963	+	IGR	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194141533	194141534	+	IGR	DNP	GG	AT	AT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210045033	210045033	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	234494474	234494474	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92118611	92118611	+	IGR	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116365577	116365577	+	IGR	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	174095755	174095755	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	17918989	17918989	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180605797	180605797	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	182329139	182329139	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186479183	186479183	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74890581	74890581	+	IGR	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75264374	75264374	+	IGR	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96472913	96472913	+	IGR	SNP	C	G	G	rs139230826	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	110268182	110268182	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135966792	135966792	+	IGR	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	16362699	16362699	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	164186965	164186965	+	IGR	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	188891974	188891974	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	34267804	34267804	+	IGR	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46726329	46726329	+	IGR	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4896497	4896497	+	IGR	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63355211	63355211	+	IGR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69170663	69170663	+	IGR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	87834785	87834785	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	10665080	10665080	+	IGR	SNP	C	A	A	rs111371347	by1000genomes	TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	143131809	143131809	+	IGR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	156273555	156273555	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	17747974	17747974	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25909711	25909711	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41587503	41587503	+	IGR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56615787	56615787	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7290877	7290877	+	IGR	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84761054	84761054	+	IGR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106115060	106115060	+	IGR	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27979655	27979655	+	IGR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28937044	28937044	+	IGR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	44482660	44482660	+	IGR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	51980528	51980528	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85996059	85996059	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143295349	143295349	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21259798	21259798	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42836372	42836372	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	47093173	47093173	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55780887	55780888	+	IGR	DNP	CC	AA	AA			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56356895	56356895	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62669760	62669760	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63961975	63961977	+	IGR	DEL	GAG	-	-			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64196818	64196818	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88141800	88141800	+	IGR	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88269725	88269725	+	IGR	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	94412560	94412560	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	94463233	94463233	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5706495	5706495	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	81471709	81471709	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	79164375	79164375	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84702382	84702382	+	IGR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84702651	84702651	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110864216	110864216	+	IGR	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	128542473	128542473	+	IGR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134747807	134747807	+	IGR	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135378857	135378857	+	IGR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37403148	37403148	+	IGR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	67820293	67820293	+	IGR	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72990046	72990046	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89295516	89295516	+	IGR	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89368255	89368255	+	IGR	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13568458	13568458	+	IGR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	23069274	23069274	+	IGR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77910358	77910358	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108116593	108116593	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108247587	108247587	+	Silent	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108417743	108417743	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VLDLR	7436	broad.mit.edu	37	9	2652803	2652803	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79862339	79862339	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS39	23339	broad.mit.edu	37	15	42480175	42480175	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM2A	222008	broad.mit.edu	37	7	54621671	54621671	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF1	8936	broad.mit.edu	37	6	110423279	110423279	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177069408	177069408	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167272528	167272528	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113120584	113120584	+	Silent	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR63	126820	broad.mit.edu	37	1	85561704	85561704	+	Splice_Site	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI1	55062	broad.mit.edu	37	17	66418017	66418017	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP3	8838	broad.mit.edu	37	6	112382130	112382130	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK4	65266	broad.mit.edu	37	17	40937208	40937208	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK4	65266	broad.mit.edu	37	17	40939444	40939444	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT3A	89780	broad.mit.edu	37	1	228238526	228238526	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT3A	89780	broad.mit.edu	37	1	228247907	228247907	+	3'UTR	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT7A	7476	broad.mit.edu	37	3	13916571	13916571	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSB1	26118	broad.mit.edu	37	17	25633913	25633913	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32437853	32437853	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31595228	31595228	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56364751	56364751	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO6	23214	broad.mit.edu	37	16	28112854	28112854	+	Silent	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC4	7518	broad.mit.edu	37	5	82649012	82649012	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YES1	7525	broad.mit.edu	37	18	756705	756705	+	Silent	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100344252	100344252	+	Silent	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100388667	100388668	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167051819	167051819	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBP1	81030	broad.mit.edu	37	20	56179482	56179482	+	3'UTR	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB49	166793	broad.mit.edu	37	4	4304168	4304168	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB9	221504	broad.mit.edu	37	6	33423488	33423488	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC17	23390	broad.mit.edu	37	12	77220565	77220565	+	Intron	SNP	A	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC3	51304	broad.mit.edu	37	3	44974515	44974515	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31809025	31809025	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAT	57623	broad.mit.edu	37	8	135612705	135612705	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72004520	72004520	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77690615	77690615	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ1	57178	broad.mit.edu	37	10	81070958	81070958	+	Intron	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45867730	45867731	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF133	7692	broad.mit.edu	37	20	18296642	18296642	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF165	7718	broad.mit.edu	37	6	28053456	28053456	+	Silent	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF254	9534	broad.mit.edu	37	19	24309224	24309224	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF346	23567	broad.mit.edu	37	5	176477987	176477987	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF366	167465	broad.mit.edu	37	5	71743271	71743271	+	Intron	SNP	G	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF569	148266	broad.mit.edu	37	19	37917230	37917230	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585A	199704	broad.mit.edu	37	19	37644059	37644059	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	60024	60024	+	Silent	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF608	57507	broad.mit.edu	37	5	123983235	123983235	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF648	127665	broad.mit.edu	37	1	182026294	182026294	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22363326	22363326	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22363351	22363351	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF677	342926	broad.mit.edu	37	19	53754830	53754830	+	5'UTR	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF678	339500	broad.mit.edu	37	1	227813671	227813671	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF69	7620	broad.mit.edu	37	19	12014497	12014498	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63679647	63679647	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185801561	185801561	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF80	7634	broad.mit.edu	37	3	113955551	113955551	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF98	148198	broad.mit.edu	37	19	22586189	22586189	+	Silent	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP3	7784	broad.mit.edu	37	7	76063027	76063027	+	Intron	SNP	T	C	C			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3984618	3984618	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30938552	30938552	+	RNA	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55062978	55062978	+	RNA	SNP	A	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55064845	55064845	+	Intron	SNP	T	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22476150	22476150	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22554927	22554927	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102312649	102312649	+	5'Flank	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20320084	20320084	+	RNA	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20332055	20332055	+	RNA	SNP	T	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15880414	15880414	+	RNA	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	24115663	24115663	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	40146593	40146593	+	5'UTR	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148887713	148887713	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133075596	133075597	+	Intron	DNP	GG	TT	TT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89521160	89521161	+	Intron	DNP	GG	TT	TT			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180538837	180538837	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	187250190	187250190	+	Intron	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69334500	69334500	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	85165405	85165405	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180110349	180110349	+	5'Flank	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100609961	100609961	+	Intron	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142139612	142139612	+	Intron	SNP	C	G	G			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142206931	142206931	+	Intron	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471350	142471350	+	Intron	SNP	C	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	39873730	39873730	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78969044	78969044	+	Silent	SNP	G	T	T			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
