Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1BG	1	broad.mit.edu	37	19	58862752	58862752	+	Intron	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD12B	145447	broad.mit.edu	37	14	51352529	51352529	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106518456	106518456	+	RNA	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106518542	106518542	+	RNA	SNP	A	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106877507	106877507	+	Intron	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64582594	64582594	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236659077	236659077	+	Silent	SNP	G	A	A	rs139143512	byFrequency	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1L	55057	broad.mit.edu	37	1	26655271	26655271	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP12	9590	broad.mit.edu	37	6	151672021	151672021	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A1	216	broad.mit.edu	37	9	75555020	75555020	+	Intron	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56205126	56205126	+	Missense_Mutation	SNP	G	T	T	rs115584025	byFrequency;by1000genomes	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC4	29945	broad.mit.edu	37	4	25390386	25390386	+	Intron	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGEL1	23357	broad.mit.edu	37	14	77275637	77275637	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKH	56172	broad.mit.edu	37	5	14871414	14871414	+	Intron	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD49	54851	broad.mit.edu	37	11	94230270	94230270	+	Intron	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1S1	1174	broad.mit.edu	37	7	100803874	100803874	+	3'UTR	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB48R	55911	broad.mit.edu	37	16	28509145	28509145	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138914391	138914391	+	5'UTR	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76939965	76939965	+	Silent	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT3	283358	broad.mit.edu	37	12	654047	654047	+	Splice_Site	SNP	G	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD1	54014	broad.mit.edu	37	21	40569284	40569284	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf53	78995	broad.mit.edu	37	17	42229868	42229868	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75038612	75038612	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf63	130162	broad.mit.edu	37	2	55435713	55435713	+	Intron	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57409395	57409395	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24432663	24432663	+	Intron	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134635162	134635162	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44144683	44144683	+	Silent	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2983995	2983995	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC27	148870	broad.mit.edu	37	1	3680249	3680249	+	Intron	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC3	83643	broad.mit.edu	37	10	12940429	12940429	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5	921	broad.mit.edu	37	11	60890291	60890291	+	Intron	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176017071	176017071	+	Intron	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM4	1089	broad.mit.edu	37	19	42132119	42132119	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104030306	104030306	+	Intron	SNP	A	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104041347	104041347	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196684873	196684873	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120128147	120128147	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP1	84735	broad.mit.edu	37	18	72250879	72250879	+	Silent	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58608503	58608503	+	Intron	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146741075	146741075	+	Missense_Mutation	SNP	G	A	A	rs138738227	by1000genomes	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7546881	7546881	+	Intron	SNP	G	A	A	rs146297757	by1000genomes	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130363892	130363892	+	Intron	SNP	G	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPM	1368	broad.mit.edu	37	12	69326415	69326415	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPVL	54504	broad.mit.edu	37	7	29132221	29132221	+	Intron	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf40A	91966	broad.mit.edu	37	X	148628443	148628443	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	23002904	23002904	+	Missense_Mutation	SNP	G	A	A	rs140750865		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	41627459	41627459	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4V2	285440	broad.mit.edu	37	4	187131662	187131662	+	Missense_Mutation	SNP	C	T	T	rs146494374		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK2	23604	broad.mit.edu	37	15	64263636	64263636	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN1	1639	broad.mit.edu	37	2	74594501	74594501	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX36	170506	broad.mit.edu	37	3	154002557	154002557	+	Intron	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKC1	1736	broad.mit.edu	37	X	153996367	153996367	+	Intron	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52429597	52429597	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB7	150353	broad.mit.edu	37	22	41257635	41257635	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC11	55735	broad.mit.edu	37	1	6727803	6727804	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32930060	32930060	+	Silent	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32930116	32930116	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102493718	102493718	+	Splice_Site	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55242466	55242480	+	In_Frame_Del	DEL	GAATTAAGAGAAGCA	-	-	rs121913426		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGR3	1960	broad.mit.edu	37	8	22548529	22548529	+	Silent	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132203597	132203597	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216741463	216741463	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXD2	55218	broad.mit.edu	37	14	69704265	69704265	+	Intron	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160A2	84067	broad.mit.edu	37	11	6244204	6244204	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM178A	55719	broad.mit.edu	37	10	102677018	102677018	+	Silent	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM193A	8603	broad.mit.edu	37	4	2664432	2664432	+	Intron	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62273639	62273639	+	Intron	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55C	91775	broad.mit.edu	37	3	101540334	101540334	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156592963	156592963	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48818423	48818423	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR3A	2214	broad.mit.edu	37	1	161514360	161514360	+	Intron	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD1	2245	broad.mit.edu	37	X	54475465	54475465	+	Intron	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ36000	284124	broad.mit.edu	37	17	21904799	21904799	+	Intron	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173232912	173232912	+	Intron	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61957888	61957888	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP4	55303	broad.mit.edu	37	7	150267105	150267105	+	Intron	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB1	10691	broad.mit.edu	37	1	29018309	29018309	+	Intron	SNP	A	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133365528	133365528	+	Intron	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPBP1L1	60313	broad.mit.edu	37	1	46120493	46120493	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL3	57822	broad.mit.edu	37	1	24663569	24663569	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN1	2902	broad.mit.edu	37	9	140055781	140055781	+	Silent	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSS	2937	broad.mit.edu	37	20	33516603	33516603	+	3'UTR	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELZ	9931	broad.mit.edu	37	17	65146228	65146228	+	Intron	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHAT	55733	broad.mit.edu	37	1	210591515	210591515	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100123148	100123149	+	Intron	INS	-	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA9	3205	broad.mit.edu	37	7	27203329	27203329	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL3	8372	broad.mit.edu	37	3	50331104	50331104	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118649138	118649138	+	Intron	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111668633	111668633	+	Silent	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	146991890	146991890	+	Silent	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD2	25948	broad.mit.edu	37	7	32909720	32909720	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202704717	202704717	+	Splice_Site	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123120414	123120414	+	Intron	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94173127	94173127	+	Silent	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2C	11004	broad.mit.edu	37	1	45220278	45220278	+	Intron	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL20	27252	broad.mit.edu	37	1	173703050	173703050	+	Silent	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KL	9365	broad.mit.edu	37	13	33629297	33629297	+	Silent	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KREMEN2	79412	broad.mit.edu	37	16	3016123	3016123	+	Intron	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-5	386680	broad.mit.edu	37	21	46000423	46000423	+	Silent	SNP	G	A	A	rs139901000	by1000genomes	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651199	1651228	+	In_Frame_Del	DEL	AGGCTGTGGGGGCTGTGGCTCCGGCTGTGC	-	-	rs144216147	by1000genomes	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC146880	146880	broad.mit.edu	37	17	62750332	62750332	+	Intron	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40709014	40709014	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM3	27258	broad.mit.edu	37	3	14222947	14222947	+	Intron	SNP	G	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6D	8581	broad.mit.edu	37	8	143866989	143866989	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39833676	39833676	+	Intron	DEL	T	-	-	rs111840698		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED1	9500	broad.mit.edu	37	X	51645010	51645010	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1A2	10905	broad.mit.edu	37	1	117944999	117945019	+	In_Frame_Del	DEL	TAGGAATACGTGGTGGAGACC	-	-			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D2	256714	broad.mit.edu	37	X	20031731	20031731	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF6	1953	broad.mit.edu	37	1	3418614	3418615	+	Intron	DEL	CG	-	-	rs58330456		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5	4249	broad.mit.edu	37	2	135076374	135076374	+	Intron	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MON1A	84315	broad.mit.edu	37	3	49947622	49947622	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS27	23107	broad.mit.edu	37	5	71516986	71516986	+	Intron	SNP	C	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A4A	51338	broad.mit.edu	37	11	60070165	60070165	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC4	4585	broad.mit.edu	37	3	195492323	195492323	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXD1	4084	broad.mit.edu	37	2	70164438	70164438	+	Silent	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPHL	343263	broad.mit.edu	37	1	109838959	109838959	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10538773	10538773	+	Silent	SNP	C	T	T	rs151186379		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69959230	69959230	+	Silent	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAGA	4668	broad.mit.edu	37	22	42456372	42456372	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144811983	144811983	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130884337	130884337	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL3	8996	broad.mit.edu	37	16	67208858	67208858	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPLOC4	55666	broad.mit.edu	37	17	79573860	79573861	+	Intron	INS	-	TTAA	TTAA	rs144978834	by1000genomes	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT2	318	broad.mit.edu	37	9	34343338	34343338	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUPL1	9818	broad.mit.edu	37	13	25905666	25905666	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G7	390265	broad.mit.edu	37	11	123909325	123909325	+	Silent	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1J2	26740	broad.mit.edu	37	9	125273234	125273234	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161781119	161781119	+	Splice_Site	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX2	5089	broad.mit.edu	37	6	32157563	32157563	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA10	56139	broad.mit.edu	37	5	140236799	140236799	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140167367	140167367	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK1	5122	broad.mit.edu	37	5	95751907	95751907	+	Intron	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDSS1	23590	broad.mit.edu	37	10	27024316	27024317	+	Intron	INS	-	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIH1D2	120379	broad.mit.edu	37	11	111941473	111941473	+	Intron	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIPSL	266971	broad.mit.edu	37	10	95721106	95721106	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4E	123745	broad.mit.edu	37	15	42302338	42302338	+	Frame_Shift_Del	DEL	A	-	-	rs28736629		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59811223	59811223	+	Intron	SNP	T	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD3	8985	broad.mit.edu	37	7	100859165	100859165	+	Intron	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53104271	53104271	+	3'UTR	SNP	T	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R1A	5518	broad.mit.edu	37	19	52716329	52716329	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R4	5524	broad.mit.edu	37	9	131894081	131894081	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM10	56980	broad.mit.edu	37	11	129812531	129812531	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43433896	43433896	+	Intron	DEL	T	-	-			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN12	5782	broad.mit.edu	37	7	77256457	77256457	+	Silent	SNP	C	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48181542	48181542	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB9BP1	9366	broad.mit.edu	37	5	104435729	104435729	+	RNA	SNP	A	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1P	83956	broad.mit.edu	37	12	45458905	45458905	+	RNA	SNP	T	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP4	115727	broad.mit.edu	37	19	38903681	38903681	+	Silent	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM41	55285	broad.mit.edu	37	X	106362173	106362174	+	5'Flank	INS	-	ATGCTGAACATTGTCC	ATGCTGAACATTGTCC	rs71901414		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H1	149041	broad.mit.edu	37	1	173951743	173951743	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCN1	5954	broad.mit.edu	37	11	32122293	32122293	+	Intron	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40695522	40695522	+	5'UTR	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78516456	78516456	+	5'Flank	DEL	A	-	-	rs143567101		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4	57142	broad.mit.edu	37	2	55200865	55200865	+	Intron	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAI	286205	broad.mit.edu	37	9	127765392	127765392	+	Splice_Site	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78176221	78176221	+	Silent	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4273203	4273203	+	Intron	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9044393	9044393	+	Intron	SNP	G	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122642572	122642572	+	Silent	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMG1	6406	broad.mit.edu	37	20	43836817	43836817	+	Silent	SNP	A	G	G	rs17850164		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70318954	70318954	+	3'UTR	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52033880	52033880	+	Intron	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38610025	38610025	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRT3	23410	broad.mit.edu	37	11	224185	224185	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F2	54733	broad.mit.edu	37	11	107677363	107677363	+	Intron	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A9	153129	broad.mit.edu	37	5	54929503	54929503	+	Intron	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A7	9497	broad.mit.edu	37	3	27472895	27472895	+	Silent	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS2	8470	broad.mit.edu	37	4	186544955	186544955	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOS1	6654	broad.mit.edu	37	2	39240585	39240585	+	Intron	DEL	A	-	-			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35753664	35753664	+	Intron	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16260282	16260282	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65239968	65239968	+	Silent	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK1	6732	broad.mit.edu	37	6	35806411	35806411	+	Intron	SNP	A	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSR2	6746	broad.mit.edu	37	1	155979226	155979226	+	3'UTR	SNP	G	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128134845	128134845	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO3	55002	broad.mit.edu	37	13	114201655	114201655	+	Silent	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM169	92691	broad.mit.edu	37	2	216964796	216964796	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS4	84951	broad.mit.edu	37	17	38652176	38652176	+	Intron	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP3A	7156	broad.mit.edu	37	17	18194306	18194307	+	In_Frame_Ins	INS	-	CGA	CGA			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113729448	113729448	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116430700	116430700	+	Intron	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2L	9898	broad.mit.edu	37	1	154218863	154218863	+	Intron	SNP	A	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35954373	35954373	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13D	201294	broad.mit.edu	37	17	73824137	73824137	+	Missense_Mutation	SNP	C	G	G	rs79891552		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP15	9958	broad.mit.edu	37	12	62783684	62783684	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38600480	38600480	+	IGR	SNP	G	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	6379601	6379601	+	IGR	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	38567180	38567180	+	IGR	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39855735	39855735	+	IGR	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	41797106	41797106	+	IGR	SNP	T	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	41797248	41797248	+	IGR	SNP	C	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121137582	121137582	+	IGR	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132181918	132181918	+	IGR	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	16010297	16010297	+	IGR	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162361872	162361872	+	IGR	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210044699	210044699	+	IGR	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36810105	36810105	+	IGR	SNP	T	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110319667	110319667	+	IGR	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56243974	56243974	+	IGR	SNP	G	A	A	rs150540313		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP7	6845	broad.mit.edu	37	X	155127856	155127856	+	Silent	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIL1	7429	broad.mit.edu	37	2	219301981	219301981	+	Silent	SNP	C	T	T	rs141506332	byFrequency	TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VLDLR	7436	broad.mit.edu	37	9	2635511	2635511	+	Silent	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180775220	180775220	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YRDC	79693	broad.mit.edu	37	1	38270003	38270003	+	Silent	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCWPW1	55063	broad.mit.edu	37	7	100014548	100014548	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC16	84287	broad.mit.edu	37	10	99211511	99211511	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC5	25921	broad.mit.edu	37	11	57449913	57449913	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND1	79752	broad.mit.edu	37	8	82626245	82626245	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52626271	52626271	+	Intron	SNP	C	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF384	171017	broad.mit.edu	37	12	6788136	6788136	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22806286	22806286	+	Silent	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF532	55205	broad.mit.edu	37	18	56620876	56620876	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	64890	64890	+	Intron	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNRF3	84133	broad.mit.edu	37	22	29449563	29449563	+	Intron	SNP	C	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187702037	187702037	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69068019	69068019	+	Intron	SNP	T	C	C			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	8105	8105	+	RNA	SNP	G	A	A			TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
