Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACER2	340485	broad.mit.edu	37	9	19424530	19424530	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT1	139741	broad.mit.edu	37	X	127185954	127185954	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43833626	43833626	+	Intron	SNP	A	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77951940	77951940	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
API5	8539	broad.mit.edu	37	11	43340417	43340417	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP8	343	broad.mit.edu	37	16	25238282	25238282	+	Intron	SNP	A	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76875916	76875916	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAHCC1	57597	broad.mit.edu	37	17	79409981	79409981	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT1	7919	broad.mit.edu	37	6	31508296	31508296	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT5	7920	broad.mit.edu	37	6	31669840	31669840	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2A1	597	broad.mit.edu	37	15	80253408	80253408	+	3'UTR	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICD1	636	broad.mit.edu	37	12	32491707	32491707	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL2	56244	broad.mit.edu	37	6	32362585	32362585	+	Silent	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf99	387695	broad.mit.edu	37	10	85944358	85944358	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf63	79864	broad.mit.edu	37	11	122775840	122775840	+	Intron	SNP	A	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf9	745	broad.mit.edu	37	11	61539415	61539415	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf73	254528	broad.mit.edu	37	16	1894854	1894854	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30791980	30791980	+	Silent	SNP	T	A	A	rs61749300		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF7	114905	broad.mit.edu	37	4	15444073	15444073	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf24	55969	broad.mit.edu	37	20	35237963	35237963	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf43	51233	broad.mit.edu	37	22	23955358	23955358	+	Intron	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf38	153571	broad.mit.edu	37	5	2753492	2753492	+	Intron	SNP	A	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf51	285636	broad.mit.edu	37	5	41904478	41904478	+	Silent	SNP	C	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA1	759	broad.mit.edu	37	8	86245699	86245699	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54872835	54872835	+	Intron	SNP	A	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER4	378807	broad.mit.edu	37	1	26528939	26528939	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC45	90799	broad.mit.edu	37	17	62504728	62504728	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNYL1	151195	broad.mit.edu	37	2	208605368	208605368	+	Intron	SNP	T	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25B	994	broad.mit.edu	37	20	3783699	3783699	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	175992422	175992422	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFL2	1073	broad.mit.edu	37	14	35182544	35182544	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147964316	147964316	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76556183	76556184	+	Intron	INS	-	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105800830	105800830	+	Silent	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A2	1292	broad.mit.edu	37	21	47532313	47532313	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE7	27132	broad.mit.edu	37	16	89662090	89662090	+	Intron	SNP	A	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB1	1414	broad.mit.edu	37	22	27012048	27012048	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3226892	3226892	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113564858	113564858	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1A1P	161635	broad.mit.edu	37	15	37109938	37109938	+	RNA	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX12	440081	broad.mit.edu	37	12	9573018	9573018	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4A	10260	broad.mit.edu	37	15	66021846	66021846	+	Intron	SNP	T	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4B	9909	broad.mit.edu	37	1	153909237	153909237	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLST	1743	broad.mit.edu	37	14	75364926	75364926	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32328141	32328141	+	Intron	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA4	55211	broad.mit.edu	37	3	109049557	109049557	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	rs121434568		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP300	2033	broad.mit.edu	37	22	41521784	41521784	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134514403	134514403	+	5'UTR	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPNP	284729	broad.mit.edu	37	1	17017751	17017751	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067206	190067206	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FDFT1	2222	broad.mit.edu	37	8	11683576	11683576	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L5	90342	broad.mit.edu	37	2	97361646	97361646	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14862467	14862467	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP3	50943	broad.mit.edu	37	X	49113188	49113188	+	Intron	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD8	83786	broad.mit.edu	37	11	65172387	65172387	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXR1	8087	broad.mit.edu	37	3	180630550	180630550	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179743881	179743882	+	Intron	INS	-	CTGT	CTGT			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L	79411	broad.mit.edu	37	2	220102885	220102885	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL1	92292	broad.mit.edu	37	11	58723213	58723213	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB1	2782	broad.mit.edu	37	1	1718768	1718768	+	3'UTR	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90125039	90125039	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1A	57655	broad.mit.edu	37	19	35512776	35512776	+	Intron	SNP	C	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27856237	27856237	+	Intron	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA1	2938	broad.mit.edu	37	6	52657545	52657545	+	Intron	SNP	T	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYS1	2997	broad.mit.edu	37	19	49494725	49494725	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC11	79885	broad.mit.edu	37	3	13542208	13542208	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC5	10014	broad.mit.edu	37	17	42188978	42188978	+	Intron	SNP	C	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC5	10014	broad.mit.edu	37	17	42189016	42189016	+	Intron	SNP	C	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18875236	18875236	+	Intron	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92838013	92838013	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81335569	81335569	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHAT	55733	broad.mit.edu	37	1	210761218	210761218	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3F	8968	broad.mit.edu	37	6	26250719	26250719	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA13	3209	broad.mit.edu	37	7	27238157	27238157	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70989186	70989186	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT88	8100	broad.mit.edu	37	13	21181799	21181799	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBE	83729	broad.mit.edu	37	12	57850082	57850082	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSIG1	3638	broad.mit.edu	37	7	155094563	155094563	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX6	79190	broad.mit.edu	37	16	55360423	55360423	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52360756	52360756	+	Silent	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31282350	31282351	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK4	163782	broad.mit.edu	37	1	62737210	62737210	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNAL2	83473	broad.mit.edu	37	18	44580978	44580978	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169812504	169812504	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142659398	142659398	+	5'UTR	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0528	9847	broad.mit.edu	37	12	22697149	22697149	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA4	3840	broad.mit.edu	37	3	160286030	160286030	+	5'Flank	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT25	147183	broad.mit.edu	37	17	38906800	38906800	+	Missense_Mutation	SNP	G	A	A	rs77242879	byFrequency;by1000genomes	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651199	1651228	+	In_Frame_Del	DEL	AGGCTGTGGGGGCTGTGGCTCCGGCTGTGC	-	-	rs144216147	by1000genomes	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60910196	60910196	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINS1	55180	broad.mit.edu	37	15	101115176	101115176	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151388763	151388763	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74507534	74507534	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220805674	220805674	+	Intron	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47315146	47315146	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDP1	145553	broad.mit.edu	37	14	24683410	24683410	+	Intron	SNP	A	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13	9969	broad.mit.edu	37	17	60040305	60040305	+	Silent	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141785659	141785659	+	Intron	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA2	117153	broad.mit.edu	37	14	39716224	39716224	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKLN1	4289	broad.mit.edu	37	7	131113849	131113849	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMAB	326625	broad.mit.edu	37	12	110006724	110006724	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP12	4321	broad.mit.edu	37	11	102743681	102743681	+	Silent	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102565710	102565710	+	Silent	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102565768	102565768	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102565801	102565801	+	Silent	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOG	4340	broad.mit.edu	37	6	29638806	29638806	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132649115	132649115	+	Intron	SNP	A	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192225432	192225432	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L5	266812	broad.mit.edu	37	4	89618409	89618409	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA1	8648	broad.mit.edu	37	2	24930566	24930566	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55505634	55505634	+	Intron	DEL	T	-	-			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56382251	56382251	+	Missense_Mutation	SNP	C	G	G	rs144714657	by1000genomes	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL4	8715	broad.mit.edu	37	18	31537161	31537161	+	Intron	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP16	51491	broad.mit.edu	37	5	175811464	175811464	+	Intron	SNP	C	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP16	51491	broad.mit.edu	37	5	175812191	175812191	+	Intron	SNP	C	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP16	51491	broad.mit.edu	37	5	175813814	175813814	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT16L1	84309	broad.mit.edu	37	16	4745281	4745281	+	3'UTR	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT9	53343	broad.mit.edu	37	4	88343913	88343925	+	5'UTR	DEL	GCTACTCCCGTTC	-	-	rs113013798		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167551958	167551958	+	Silent	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D9	390199	broad.mit.edu	37	11	59283060	59283060	+	Silent	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55405809	55405809	+	5'Flank	SNP	T	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G1	125962	broad.mit.edu	37	19	9226266	9226266	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXA1L	5018	broad.mit.edu	37	14	23236654	23236654	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HB	5034	broad.mit.edu	37	17	79804869	79804869	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK1IP1	55003	broad.mit.edu	37	6	10702848	10702849	+	Missense_Mutation	DNP	CG	AT	AT	rs114979482	byFrequency;by1000genomes	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138453153	138453153	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB1	56104	broad.mit.edu	37	5	140730641	140730641	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72296591	72296591	+	Intron	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149311640	149311640	+	Intron	SNP	C	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR4	65979	broad.mit.edu	37	1	28817596	28817596	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF12	57649	broad.mit.edu	37	17	27239438	27239438	+	Intron	SNP	T	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R1	5295	broad.mit.edu	37	5	67584451	67584451	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2B	8396	broad.mit.edu	37	17	36935652	36935652	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81151065	81151065	+	Silent	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18865975	18865975	+	Intron	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151142342	151142342	+	Missense_Mutation	SNP	C	T	T	rs140780640	byFrequency;by1000genomes	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA8	50640	broad.mit.edu	37	7	108150995	108150995	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2E	5434	broad.mit.edu	37	19	1091773	1091773	+	Intron	SNP	T	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1A	5494	broad.mit.edu	37	14	60756655	60756655	+	Intron	SNP	T	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57372258	57372258	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR2A	5576	broad.mit.edu	37	3	48831587	48831587	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43702476	43702476	+	Intron	SNP	T	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC2	5701	broad.mit.edu	37	7	103006539	103006539	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTDSS1	9791	broad.mit.edu	37	8	97321848	97321848	+	Silent	SNP	T	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM1	9698	broad.mit.edu	37	1	31479805	31479805	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABEP1	9135	broad.mit.edu	37	17	5286437	5286437	+	Silent	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1	23637	broad.mit.edu	37	9	125836554	125836554	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS12	6002	broad.mit.edu	37	4	3344679	3344679	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72806907	72806907	+	Intron	DEL	A	-	-			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK2	55781	broad.mit.edu	37	5	96503628	96503628	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL3L	6123	broad.mit.edu	37	16	2000751	2000751	+	Intron	SNP	T	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL6	6128	broad.mit.edu	37	12	112843710	112843710	+	Missense_Mutation	SNP	T	G	G	rs148929822	byFrequency	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPRY1	89970	broad.mit.edu	37	16	57261295	57261295	+	Frame_Shift_Del	DEL	T	-	-			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38948368	38948368	+	Intron	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51173914	51173914	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL3	27164	broad.mit.edu	37	18	76752165	76752165	+	Silent	SNP	C	A	A	rs140790375	byFrequency	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS3	55291	broad.mit.edu	37	11	68337296	68337296	+	Silent	SNP	T	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95085495	95085495	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7214659	7214659	+	Intron	SNP	T	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPA1	653509	broad.mit.edu	37	10	81373378	81373379	+	Intron	DEL	AG	-	-			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC14	100049587	broad.mit.edu	37	19	52148952	52148953	+	Intron	INS	-	ACAC	ACAC	rs141777694	by1000genomes	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC9	27180	broad.mit.edu	37	19	51630513	51630513	+	Silent	SNP	T	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A1	6563	broad.mit.edu	37	18	43310932	43310932	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC19A2	10560	broad.mit.edu	37	1	169438087	169438088	+	Intron	INS	-	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A12	8604	broad.mit.edu	37	2	172644412	172644412	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A12	8604	broad.mit.edu	37	2	172725074	172725074	+	Intron	SNP	T	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21355464	21355464	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOLH	6650	broad.mit.edu	37	16	601212	601212	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34205536	34205536	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34205542	34205542	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34205665	34205665	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34205984	34205984	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34206123	34206123	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34207180	34207180	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34207242	34207242	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34207279	34207279	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34207284	34207284	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34207380	34207380	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34208665	34208665	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSTR1	6751	broad.mit.edu	37	14	38679102	38679102	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX2IP	117178	broad.mit.edu	37	1	85115982	85115982	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA5	29906	broad.mit.edu	37	18	44268625	44268625	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT3H	8464	broad.mit.edu	37	6	44988380	44988380	+	Intron	SNP	T	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152671318	152671318	+	Silent	SNP	T	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARBP1	6894	broad.mit.edu	37	1	234536884	234536884	+	Intron	SNP	T	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D16	125058	broad.mit.edu	37	17	77915948	77915948	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114823226	114823226	+	Intron	SNP	T	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65146797	65146797	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122830700	122830700	+	Intron	DEL	A	-	-			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132A	54972	broad.mit.edu	37	11	60695271	60695271	+	Silent	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIP3	79931	broad.mit.edu	37	4	122063984	122063984	+	Intron	SNP	T	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS1BP1	85456	broad.mit.edu	37	11	57069779	57069779	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175049279	175049279	+	Intron	SNP	T	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP3B	8940	broad.mit.edu	37	22	22323138	22323138	+	Silent	SNP	A	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53BP2	7159	broad.mit.edu	37	1	223983555	223983555	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577085	7577085	+	Nonsense_Mutation	SNP	C	A	A	rs112431538		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRUB2	26995	broad.mit.edu	37	9	131071839	131071839	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSTA3	7264	broad.mit.edu	37	8	144696688	144696688	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC14	151613	broad.mit.edu	37	3	180320181	180320181	+	Silent	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRO3	7301	broad.mit.edu	37	15	41865675	41865675	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35366901	35366901	+	Intron	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115410079	115410079	+	IGR	SNP	A	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49356262	49356262	+	IGR	SNP	A	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55259462	55259462	+	IGR	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56508069	56508069	+	IGR	SNP	T	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19240014	19240014	+	IGR	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19114377	19114377	+	IGR	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59294758	59294758	+	IGR	SNP	T	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33404701	33404701	+	IGR	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33630158	33630158	+	IGR	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187684409	187684409	+	IGR	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	943573	943573	+	IGR	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	34208983	34208983	+	IGR	SNP	G	T	T	rs6088904		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	32549555	32549555	+	IGR	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	39255862	39255862	+	IGR	SNP	T	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	73231864	73231864	+	IGR	SNP	C	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75263762	75263762	+	IGR	DEL	G	-	-			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96069010	96069010	+	IGR	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57084503	57084503	+	IGR	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62693667	62693667	+	IGR	SNP	A	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106776932	106776932	+	IGR	SNP	T	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134743470	134743470	+	IGR	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	3635386	3635386	+	IGR	SNP	C	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65176458	65176458	+	IGR	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VDR	7421	broad.mit.edu	37	12	48272937	48272937	+	Intron	SNP	T	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71175812	71175812	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85781638	85781638	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	53889528	53889528	+	Intron	SNP	T	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC1	23286	broad.mit.edu	37	5	167855884	167855884	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC1	23286	broad.mit.edu	37	5	167882278	167882278	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31598368	31598368	+	Silent	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168115032	168115032	+	3'UTR	SNP	A	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB11	27107	broad.mit.edu	37	3	101378534	101378534	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12D	340152	broad.mit.edu	37	6	149778067	149778067	+	Intron	SNP	G	A	A			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF582	147948	broad.mit.edu	37	19	56896634	56896634	+	Intron	SNP	G	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF622	90441	broad.mit.edu	37	5	16465785	16465785	+	5'UTR	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF707	286075	broad.mit.edu	37	8	144772152	144772152	+	Intron	DEL	G	-	-	rs35228840		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3990763	3990763	+	Silent	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	90838480	90838480	+	5'Flank	SNP	T	G	G			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	905832	905873	+	5'Flank	DEL	TCCTCGCCTGCAATGGGTCTGGTGTTTCATTTCCTCCCGGGG	-	-	rs112506475	by1000genomes	TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84676600	84676600	+	Intron	SNP	G	C	C			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
