Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7629967	7629967	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AADACL3	126767	broad.mit.edu	37	1	12779534	12779534	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASS	10157	broad.mit.edu	37	7	121769442	121769442	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48266979	48266979	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48428735	48428735	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107589502	107589502	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67111489	67111489	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66920869	66920869	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67024005	67024005	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169836375	169836375	+	Splice_Site	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87035567	87035567	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20738227	20738227	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48201550	48201550	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48256525	48256525	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48141258	48141258	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16150007	16150007	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183700635	183700635	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17416026	17416026	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17434921	17434921	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17434996	17434996	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI1	10006	broad.mit.edu	37	10	27112235	27112235	+	Splice_Site	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148563037	148563037	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148625996	148625996	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABT1	29777	broad.mit.edu	37	6	26598587	26598587	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCSL	390110	broad.mit.edu	37	11	44069547	44069547	+	5'UTR	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCS	84680	broad.mit.edu	37	11	44105089	44105089	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM1	116285	broad.mit.edu	37	16	20635556	20635556	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20552030	20552030	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA1	58	broad.mit.edu	37	1	229567635	229567635	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL6B	51412	broad.mit.edu	37	7	100244137	100244137	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236917279	236917279	+	Silent	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVRL1	94	broad.mit.edu	37	12	52306955	52306955	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127843972	127843972	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21P1	145241	broad.mit.edu	37	14	70714342	70714342	+	5'UTR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87746060	87746060	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207474736	207474736	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106311789	106311789	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106733568	106733568	+	RNA	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107131003	107131003	+	Intron	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107137081	107137081	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33576137	33576137	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33658341	33658341	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS15	170689	broad.mit.edu	37	11	130332435	130332435	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5262931	5262932	+	Intron	DNP	CA	AG	AG			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100695480	100695480	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28212700	28212700	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18504971	18504971	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18718409	18718409	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18817158	18817158	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK4	79934	broad.mit.edu	37	19	41206327	41206327	+	Missense_Mutation	SNP	C	A	A	rs147037877		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70922833	70922833	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111885621	111885621	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADNP2	22850	broad.mit.edu	37	18	77894245	77894245	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPGK	83440	broad.mit.edu	37	15	73047867	73047867	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1A	148	broad.mit.edu	37	8	26627776	26627776	+	Missense_Mutation	SNP	G	T	T	rs1048102		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRBK1	156	broad.mit.edu	37	11	67046685	67046685	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1	60312	broad.mit.edu	37	4	7811568	7811568	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147967551	147967551	+	Intron	SNP	G	A	A	rs148137743	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148059311	148059311	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236617781	236617781	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL2	79841	broad.mit.edu	37	11	47681984	47681984	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT4	56895	broad.mit.edu	37	6	161570225	161570225	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT4	56895	broad.mit.edu	37	6	161653134	161653134	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGT	183	broad.mit.edu	37	1	230846389	230846389	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105415110	105415110	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK7	122481	broad.mit.edu	37	14	96949366	96949366	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK7	122481	broad.mit.edu	37	14	96949376	96949376	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP10	11216	broad.mit.edu	37	17	19813325	19813325	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86284145	86284145	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91725996	91725996	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B10	57016	broad.mit.edu	37	7	134215686	134215686	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR7A3	22977	broad.mit.edu	37	1	19612377	19612377	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58247299	58247299	+	3'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125854372	125854372	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG3	10195	broad.mit.edu	37	3	183960451	183960451	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH3	221120	broad.mit.edu	37	11	43920661	43920661	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29606781	29606781	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPPL2	251	broad.mit.edu	37	2	233272500	233272500	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CL	259173	broad.mit.edu	37	3	46716186	46716186	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2	57679	broad.mit.edu	37	2	202582828	202582828	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38424457	38424457	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT4	51378	broad.mit.edu	37	20	870864	870864	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41557874	41557874	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41573153	41573153	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61932654	61932654	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	73956491	73956491	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95513899	95513899	+	RNA	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14782613	14782613	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14822464	14822464	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14851756	14851756	+	Frame_Shift_Del	DEL	G	-	-	rs148887033	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD44	91526	broad.mit.edu	37	2	197878319	197878319	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS4B	257629	broad.mit.edu	37	16	21261823	21261823	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26555920	26555920	+	Intron	SNP	G	T	T	rs143704682	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101381203	101381203	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101413969	101413969	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22242707	22242707	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22283567	22283567	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69304502	69304502	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR2	118429	broad.mit.edu	37	4	80828641	80828641	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR2	118429	broad.mit.edu	37	4	80992766	80992766	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR2	118429	broad.mit.edu	37	4	80992829	80992829	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA13	312	broad.mit.edu	37	8	124696882	124696882	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36572086	36572086	+	Intron	SNP	C	G	G	rs140524230	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36616055	36616055	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36657948	36657948	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4M1	9179	broad.mit.edu	37	7	99699374	99699374	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA1	320	broad.mit.edu	37	9	72071250	72071250	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29386539	29386539	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40936666	40936666	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC1	339	broad.mit.edu	37	12	7818601	7818601	+	5'Flank	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21234160	21234160	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOL6	80830	broad.mit.edu	37	22	36054687	36054687	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141052406	141052406	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF2	10564	broad.mit.edu	37	20	47648708	47648708	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP21	57584	broad.mit.edu	37	10	24924047	24924047	+	Intron	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69002621	69002621	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11200338	11200338	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11352823	11352823	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP9	64333	broad.mit.edu	37	12	57870482	57870482	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135760186	135760186	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157488201	157488201	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4A	5926	broad.mit.edu	37	14	58772654	58772654	+	Intron	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4B	51742	broad.mit.edu	37	1	235383560	235383560	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC1	55156	broad.mit.edu	37	8	66534452	66534452	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23290941	23290941	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC5	79798	broad.mit.edu	37	16	31476282	31476282	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC9	80210	broad.mit.edu	37	2	232104712	232104712	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARR3	407	broad.mit.edu	37	X	69500011	69500011	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART3	419	broad.mit.edu	37	4	77021379	77021379	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155449401	155449401	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD5	79915	broad.mit.edu	37	17	29221104	29221104	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF7IP	55729	broad.mit.edu	37	12	14609578	14609578	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF7IP	55729	broad.mit.edu	37	12	14610174	14610175	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96755865	96755865	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193032638	193032638	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160141450	160141450	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160141452	160141452	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119510248	119510248	+	Missense_Mutation	SNP	G	T	T	rs143954745	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36041670	36041670	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36054497	36054497	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5H	10476	broad.mit.edu	37	17	73036053	73036053	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0D1	9114	broad.mit.edu	37	16	67476968	67476968	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0D2	245972	broad.mit.edu	37	8	87125988	87125988	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0D2	245972	broad.mit.edu	37	8	87165051	87165051	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50190202	50190202	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117024738	117024738	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117045739	117045739	+	Silent	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUP1	550	broad.mit.edu	37	2	74754001	74754001	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AURKA	6790	broad.mit.edu	37	20	54948488	54948488	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	69599543	69599543	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXL	558	broad.mit.edu	37	19	41744609	41744609	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZU1	566	broad.mit.edu	37	19	828484	828484	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GAT2	135152	broad.mit.edu	37	6	71603888	71603888	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAALC	79870	broad.mit.edu	37	8	104240321	104240321	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039277	11039277	+	3'UTR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69703696	69703696	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70049262	70049262	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1388884	1388884	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAMBI	25805	broad.mit.edu	37	10	28971061	28971061	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160229598	160229598	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160229604	160229604	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160229657	160229657	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160229661	160229661	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156622018	156622018	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156628514	156628514	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	59093252	59093252	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	59115345	59115345	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165548502	165548502	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICD1	636	broad.mit.edu	37	12	32480545	32480545	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN2	51411	broad.mit.edu	37	12	51689810	51689810	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLZF1	8548	broad.mit.edu	37	1	169338845	169338845	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43292122	43292122	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36948676	36948676	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPNT1	10380	broad.mit.edu	37	1	220242743	220242743	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD4	23476	broad.mit.edu	37	19	15354287	15354287	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRDT	676	broad.mit.edu	37	1	92457919	92457919	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49695595	49695595	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107937726	107937726	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD16	118663	broad.mit.edu	37	10	124097609	124097609	+	3'UTR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD7	55727	broad.mit.edu	37	14	93761036	93761036	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN1A1	696	broad.mit.edu	37	6	26509123	26509123	+	Silent	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A1	11120	broad.mit.edu	37	6	26463790	26463790	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf107	219621	broad.mit.edu	37	10	63519868	63519868	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105920734	105920734	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf90	118611	broad.mit.edu	37	10	128147624	128147624	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf24	53838	broad.mit.edu	37	11	68029494	68029494	+	Silent	SNP	C	A	A	rs144699148	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76260927	76260927	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33564580	33564580	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf42	160298	broad.mit.edu	37	11	6231720	6231720	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf39	80763	broad.mit.edu	37	12	21680173	21680173	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf53	196500	broad.mit.edu	37	12	6804645	6804645	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf16	121793	broad.mit.edu	37	13	111973159	111973159	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf106	55320	broad.mit.edu	37	14	45712152	45712152	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf177	283598	broad.mit.edu	37	14	99183594	99183594	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf68	283600	broad.mit.edu	37	14	100795348	100795348	+	Nonsense_Mutation	SNP	G	T	T	rs147730585		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf42	90381	broad.mit.edu	37	15	90167030	90167030	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf54	283897	broad.mit.edu	37	16	29756144	29756144	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf78	123970	broad.mit.edu	37	16	49430386	49430386	+	Silent	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf57	124989	broad.mit.edu	37	17	45451949	45451949	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf36	113177	broad.mit.edu	37	19	2099252	2099252	+	Splice_Site	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf103	55791	broad.mit.edu	37	1	111492511	111492511	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf107	27042	broad.mit.edu	37	1	210012330	210012330	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179348612	179348612	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170934323	170934323	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170965683	170965683	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75037310	75037310	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75037410	75037410	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75072350	75072350	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75072517	75072517	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf61	10485	broad.mit.edu	37	1	156386678	156386678	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf9	51430	broad.mit.edu	37	1	172558474	172558474	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf118	140711	broad.mit.edu	37	20	35517646	35517646	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf29	55317	broad.mit.edu	37	20	3802911	3802911	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf3	57136	broad.mit.edu	37	20	24959487	24959487	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf128	150147	broad.mit.edu	37	21	43528422	43528422	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf30	253143	broad.mit.edu	37	22	32097683	32097683	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf42	150297	broad.mit.edu	37	22	32546309	32546309	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf16	84226	broad.mit.edu	37	2	27805239	27805239	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf83	56918	broad.mit.edu	37	2	228476285	228476285	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf85	285093	broad.mit.edu	37	2	242815036	242815036	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3AR1	719	broad.mit.edu	37	12	8212797	8212797	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3	718	broad.mit.edu	37	19	6686930	6686930	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf30	152405	broad.mit.edu	37	3	118866929	118866929	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf63	23272	broad.mit.edu	37	3	56655658	56655658	+	3'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf35	85438	broad.mit.edu	37	4	71202002	71202002	+	3'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5	727	broad.mit.edu	37	9	123779771	123779771	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165712899	165712899	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715075	165715075	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf129	154467	broad.mit.edu	37	6	37451048	37451048	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47976530	47976530	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	54095709	54095709	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf27	80737	broad.mit.edu	37	6	31734330	31734330	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40909775	40909775	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf16	10842	broad.mit.edu	37	7	31746992	31746992	+	3'UTR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120704476	120704476	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf66	154907	broad.mit.edu	37	7	108524400	108524400	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf66	154907	broad.mit.edu	37	7	108524580	108524580	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57341792	57341792	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf74	203076	broad.mit.edu	37	8	10557713	10557713	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15666171	15666171	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf9	11092	broad.mit.edu	37	9	135762991	135762991	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA2	760	broad.mit.edu	37	8	86392880	86392880	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24492066	24492066	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP7	164633	broad.mit.edu	37	22	30125451	30125451	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	141006957	141006957	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2566801	2566801	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53694253	53694253	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53760933	53760933	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53760942	53760942	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53839168	53839168	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181691074	181691074	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181707533	181707533	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181725136	181725136	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181726202	181726202	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48699019	48699019	+	Splice_Site	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81641406	81641406	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG1	786	broad.mit.edu	37	17	65040999	65040999	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS2	93664	broad.mit.edu	37	7	122261607	122261607	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134617818	134617818	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALHM2	51063	broad.mit.edu	37	10	105209385	105209385	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALN1	83698	broad.mit.edu	37	7	71743592	71743592	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1D	57118	broad.mit.edu	37	10	12595110	12595110	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAND1	55832	broad.mit.edu	37	12	67699249	67699249	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44148729	44148729	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN1	823	broad.mit.edu	37	11	64977410	64977410	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD10	29775	broad.mit.edu	37	22	37899160	37899160	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104937538	104937538	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP5	838	broad.mit.edu	37	11	104871020	104871020	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP5	838	broad.mit.edu	37	11	104872862	104872862	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121980765	121980765	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAST	831	broad.mit.edu	37	5	96076323	96076323	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC122	160857	broad.mit.edu	37	13	44442842	44442842	+	Silent	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC126	90693	broad.mit.edu	37	7	23682515	23682515	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106139943	106139943	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106209931	106209931	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC28A	25901	broad.mit.edu	37	6	139106455	139106455	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC34	91057	broad.mit.edu	37	11	27371933	27371933	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC40	55036	broad.mit.edu	37	17	78055328	78055328	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC85A	114800	broad.mit.edu	37	2	56420064	56420064	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCHCR1	54535	broad.mit.edu	37	6	31125262	31125262	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCM2	83605	broad.mit.edu	37	7	45115296	45115296	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCS	9973	broad.mit.edu	37	11	66367067	66367067	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74473357	74473357	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74528290	74528290	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD151	977	broad.mit.edu	37	11	837420	837420	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7647728	7647728	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD2	914	broad.mit.edu	37	1	117303199	117303199	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300A	11314	broad.mit.edu	37	17	72469746	72469746	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300A	11314	broad.mit.edu	37	17	72470716	72470716	+	Nonsense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD3D	915	broad.mit.edu	37	11	118209937	118209937	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD3D	915	broad.mit.edu	37	11	118209949	118209949	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD7	924	broad.mit.edu	37	17	80273286	80273286	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPB	9578	broad.mit.edu	37	14	103425913	103425913	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC73	79577	broad.mit.edu	37	1	193121443	193121443	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA7	83879	broad.mit.edu	37	2	174232427	174232427	+	3'UTR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24487965	24487965	+	Missense_Mutation	SNP	G	C	C	rs143036065		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64981514	64981514	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21884289	21884289	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21975500	21975500	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH1	999	broad.mit.edu	37	16	68835796	68835796	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25562964	25562964	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60427890	60427890	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH5	1003	broad.mit.edu	37	16	66436991	66436991	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63530201	63530201	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61761058	61761058	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61859037	61859037	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK13	8621	broad.mit.edu	37	7	40132365	40132365	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK18	5129	broad.mit.edu	37	1	205492400	205492400	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK4	1019	broad.mit.edu	37	12	58145275	58145275	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL1	8814	broad.mit.edu	37	14	50845235	50845235	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN1B	1027	broad.mit.edu	37	12	12870860	12870866	+	Frame_Shift_Del	DEL	CAGGAAC	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDRT15P	94158	broad.mit.edu	37	17	13928358	13928358	+	RNA	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL2	124359	broad.mit.edu	37	16	80719049	80719049	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2A	63036	broad.mit.edu	37	1	15789920	15789921	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214787202	214787202	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPT	80152	broad.mit.edu	37	16	67862182	67862182	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP120	153241	broad.mit.edu	37	5	122734824	122734824	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP135	9662	broad.mit.edu	37	4	56890589	56890589	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49044714	49044714	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP170	9859	broad.mit.edu	37	1	243319538	243319538	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP76	79959	broad.mit.edu	37	18	12674622	12674622	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES3	23491	broad.mit.edu	37	16	67006790	67006790	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196682928	196682928	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196716452	196716452	+	3'UTR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6206332	6206332	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40116400	40116400	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHGB	1114	broad.mit.edu	37	20	5897521	5897521	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	403500	403501	+	Intron	INS	-	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85211305	85211305	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL1	91851	broad.mit.edu	37	X	109919662	109919662	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136623091	136623091	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	240071724	240071724	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM5	1133	broad.mit.edu	37	15	34354914	34354914	+	5'UTR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHSY3	337876	broad.mit.edu	37	5	129520882	129520882	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP2L	150468	broad.mit.edu	37	2	113509933	113509933	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46812053	46812053	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA1	1179	broad.mit.edu	37	1	86952403	86952403	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87025857	87025858	+	Intron	INS	-	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN6	1185	broad.mit.edu	37	1	11883812	11883812	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC12A	160364	broad.mit.edu	37	12	10133119	10133119	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN1	22883	broad.mit.edu	37	1	9809460	9809460	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140281582	140281582	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123319104	123319104	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123377080	123377080	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88249384	88249384	+	Intron	SNP	G	T	T	rs151276481	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87673939	87673939	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21534381	21534381	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNNM2	54805	broad.mit.edu	37	10	104678642	104678642	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT10	25904	broad.mit.edu	37	3	32745455	32745455	+	Splice_Site	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT4	4850	broad.mit.edu	37	7	135129642	135129642	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTFR	1271	broad.mit.edu	37	9	34556267	34556267	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17235809	17235809	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41410554	41410554	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74315790	74315791	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74351765	74351765	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147092897	147092897	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125204345	125204345	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103412485	103412485	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103428152	103428152	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121224717	121224717	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121328190	121328190	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70646642	70646642	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70672649	70672649	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94056487	94056487	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61950514	61950514	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	56141530	56141530	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139707001	139707001	+	Intron	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139767336	139767336	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139815024	139815024	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139815132	139815132	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109783708	109783708	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130189681	130189681	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189927656	189927656	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189944715	189944715	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189948754	189948754	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10078711	10078712	+	Frame_Shift_Ins	INS	-	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10090436	10090436	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238269725	238269725	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130289710	130289710	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130307991	130307991	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70926771	70926771	+	Silent	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70961820	70961820	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPB1	1315	broad.mit.edu	37	11	14515881	14515881	+	Missense_Mutation	SNP	C	G	G	rs147506345		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPB2	9276	broad.mit.edu	37	3	139077137	139077137	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG2	26958	broad.mit.edu	37	7	130289969	130289969	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG2	26958	broad.mit.edu	37	7	130295014	130295014	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG	22820	broad.mit.edu	37	3	128987847	128987847	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG	22820	broad.mit.edu	37	3	128987863	128987863	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX6B1	1340	broad.mit.edu	37	19	36145555	36145555	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148601396	148601396	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB2	1361	broad.mit.edu	37	13	46656575	46656575	+	Splice_Site	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE2	221184	broad.mit.edu	37	16	57155139	57155139	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF7	79869	broad.mit.edu	37	11	61187394	61187394	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1A	1374	broad.mit.edu	37	11	68522274	68522274	+	3'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1C	126129	broad.mit.edu	37	19	50208458	50208458	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPZ	8532	broad.mit.edu	37	4	8602816	8602816	+	Intron	DEL	A	-	-	rs4594711	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR2	1380	broad.mit.edu	37	1	207640143	207640143	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197398518	197398518	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP2	7180	broad.mit.edu	37	6	49665594	49665594	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAM	56253	broad.mit.edu	37	11	122720873	122720874	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC3	64784	broad.mit.edu	37	15	91168876	91168876	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBG3	131544	broad.mit.edu	37	3	97605331	97605331	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBG3	131544	broad.mit.edu	37	3	97608237	97608237	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1413423	1413424	+	Intron	DNP	GG	TT	TT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3216592	3216592	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34123757	34123757	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113529425	113529425	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113564886	113564886	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113668524	113668524	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113678505	113678505	+	Splice_Site	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113697770	113697770	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113812517	113812517	+	Intron	SNP	G	T	T	rs59464748	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113933898	113933898	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114186069	114186069	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN1S1	1446	broad.mit.edu	37	4	70802107	70802107	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN3	1448	broad.mit.edu	37	4	71110627	71110627	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1A1P	161635	broad.mit.edu	37	15	37109690	37109690	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST8	10047	broad.mit.edu	37	20	23473599	23473599	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80085237	80085237	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68139031	68139031	+	Silent	SNP	C	A	A	rs146900023	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNBL1	56259	broad.mit.edu	37	20	36470800	36470800	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS	1503	broad.mit.edu	37	1	41450572	41450572	+	Silent	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSK	1513	broad.mit.edu	37	1	150776582	150776582	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSL2	1515	broad.mit.edu	37	9	99800108	99800108	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117424334	117424334	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTN	2017	broad.mit.edu	37	11	70261828	70261828	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16870770	16870770	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL3	8452	broad.mit.edu	37	2	225346808	225346808	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101821689	101821689	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWC25	54883	broad.mit.edu	37	17	36962616	36962616	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWF19L2	143884	broad.mit.edu	37	11	107275091	107275091	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49040160	49040160	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL9	4283	broad.mit.edu	37	4	76924763	76924763	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXXC5	51523	broad.mit.edu	37	5	139060161	139060161	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf1	9142	broad.mit.edu	37	X	144909468	144909468	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35969364	35969364	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf65	158830	broad.mit.edu	37	X	70326315	70326315	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143956510	143956510	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26B1	56603	broad.mit.edu	37	2	72371192	72371192	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125685253	125685253	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125685683	125685683	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF13	25879	broad.mit.edu	37	8	104426970	104426970	+	5'UTR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885966	88885966	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF6	55827	broad.mit.edu	37	1	168013998	168013998	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L1	139425	broad.mit.edu	37	X	27997756	27997756	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50831975	50831975	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN1	1639	broad.mit.edu	37	2	74597689	74597689	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110544905	110544905	+	3'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDC	1644	broad.mit.edu	37	7	50547537	50547537	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX10	1662	broad.mit.edu	37	11	108562509	108562509	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX12	440081	broad.mit.edu	37	12	9596015	9596015	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX18	8886	broad.mit.edu	37	2	118579413	118579413	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX21	9188	broad.mit.edu	37	10	70733333	70733333	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX27	55661	broad.mit.edu	37	20	47849974	47849974	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX43	55510	broad.mit.edu	37	6	74104594	74104594	+	5'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX43	55510	broad.mit.edu	37	6	74121941	74121941	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169362572	169362572	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB116	245930	broad.mit.edu	37	20	29891349	29891349	+	Intron	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB116	245930	broad.mit.edu	37	20	29896313	29896313	+	Intron	SNP	C	A	A	rs6121358		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB118	117285	broad.mit.edu	37	20	29956330	29956330	+	5'Flank	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1C	79958	broad.mit.edu	37	19	6475669	6475669	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140287523	140287523	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC5	9681	broad.mit.edu	37	22	32289842	32289842	+	Intron	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117165376	117165376	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117170260	117170260	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR14	8220	broad.mit.edu	37	22	19118830	19118830	+	3'UTR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR14	8220	broad.mit.edu	37	22	19127438	19127438	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR6L	85359	broad.mit.edu	37	22	20302978	20302978	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14378342	14378342	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14880857	14880857	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137148183	137148183	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50135414	50135414	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50146598	50146598	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHPS	1725	broad.mit.edu	37	19	12790352	12790352	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX35	60625	broad.mit.edu	37	20	37619999	37619999	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX37	57647	broad.mit.edu	37	12	125441676	125441676	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX40P1	653645	broad.mit.edu	37	17	58094923	58094923	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX57	90957	broad.mit.edu	37	2	39088257	39088257	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41567782	41567782	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41569554	41569554	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182835642	182835642	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK1	22943	broad.mit.edu	37	10	54074385	54074385	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP3	58512	broad.mit.edu	37	1	35370309	35370309	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX5	1749	broad.mit.edu	37	7	96650109	96650109	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118485675	118485675	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124274537	124274537	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21628134	21628134	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21789412	21789412	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52410018	52410018	+	Intron	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7660236	7660236	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7679508	7679508	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38747767	38747767	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38830022	38830022	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11572978	11572978	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11597192	11597192	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183620958	183620958	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25472446	25472446	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225670017	225670017	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225729692	225729692	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	129216871	129216871	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169477107	169477107	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	429660	429660	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37620568	37620568	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPH2	1802	broad.mit.edu	37	1	44437298	44437298	+	Missense_Mutation	SNP	G	T	T	rs144632086	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162902171	162902171	+	Intron	SNP	C	T	T	rs112912302		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35157442	35157443	+	Intron	DNP	GG	CT	CT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P2	349152	broad.mit.edu	37	7	102824393	102824393	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRGX	644168	broad.mit.edu	37	10	50594780	50594780	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28586948	28586948	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41560956	41560956	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29040804	29040804	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28993189	28993189	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSTYK	25778	broad.mit.edu	37	1	205116708	205116708	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNB	1838	broad.mit.edu	37	2	25851118	25851118	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX2	113878	broad.mit.edu	37	7	76111985	76111985	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167083011	167083011	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUXA	503835	broad.mit.edu	37	19	57665747	57665747	+	3'UTR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUXA	503835	broad.mit.edu	37	19	57666721	57666721	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DVL3	1857	broad.mit.edu	37	3	183888122	183888122	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1LI2	1783	broad.mit.edu	37	16	66768032	66768032	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F4	1874	broad.mit.edu	37	16	67228931	67228931	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F7	144455	broad.mit.edu	37	12	77423600	77423600	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F8	79733	broad.mit.edu	37	11	19251862	19251862	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2L	345930	broad.mit.edu	37	6	139167684	139167684	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDEM2	55741	broad.mit.edu	37	20	33703449	33703449	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDEM2	55741	broad.mit.edu	37	20	33703557	33703557	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83433051	83433051	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRA	1909	broad.mit.edu	37	4	148457192	148457192	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EED	8726	broad.mit.edu	37	11	85979592	85979592	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1	1915	broad.mit.edu	37	6	74229019	74229019	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A2	1917	broad.mit.edu	37	20	62121927	62121927	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2K	29904	broad.mit.edu	37	16	22268994	22268994	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB5	374786	broad.mit.edu	37	17	28417509	28417509	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFNA2	1943	broad.mit.edu	37	19	1295739	1295739	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42953452	42953452	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38406128	38406128	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2S3	1968	broad.mit.edu	37	X	24082539	24082539	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3A	8661	broad.mit.edu	37	10	120832466	120832466	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3B	8662	broad.mit.edu	37	7	2406159	2406159	+	Splice_Site	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3CL	728689	broad.mit.edu	37	16	28426164	28426164	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4A1	1973	broad.mit.edu	37	17	7476125	7476125	+	5'UTR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184049680	184049680	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107501444	107501444	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79383618	79383619	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6928343	6928343	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMX1	2016	broad.mit.edu	37	2	73160986	73160986	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENO3	2027	broad.mit.edu	37	17	4858809	4858809	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP5	59084	broad.mit.edu	37	6	46135616	46135616	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66213739	66213739	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66213745	66213745	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96706224	96706224	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97184997	97184997	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97311618	97311618	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22923973	22923973	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB2	2048	broad.mit.edu	37	1	23219579	23219579	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142561083	142561083	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142564021	142564021	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPO	2056	broad.mit.edu	37	7	100320627	100320627	+	Silent	SNP	G	T	T	rs78925197	byFrequency;by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC1	23085	broad.mit.edu	37	12	1599149	1599149	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103468881	103468881	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103483796	103483796	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103518145	103518145	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EREG	2069	broad.mit.edu	37	4	75246683	75246683	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERO1L	30001	broad.mit.edu	37	14	53119806	53119806	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPL1	9700	broad.mit.edu	37	12	53663690	53663690	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216741516	216741516	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT1	23344	broad.mit.edu	37	12	56525880	56525880	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT1	23344	broad.mit.edu	37	12	56532702	56532702	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158552764	158552764	+	Silent	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVL	51466	broad.mit.edu	37	14	100598998	100598998	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXD1	161829	broad.mit.edu	37	15	41487996	41487996	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133749297	133749297	+	3'UTR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6B	23233	broad.mit.edu	37	2	73052881	73052881	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC7	23265	broad.mit.edu	37	17	74080340	74080340	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72211453	72211453	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZH2	2146	broad.mit.edu	37	7	148512461	148512461	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6145984	6145984	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197031079	197031079	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F9	2158	broad.mit.edu	37	X	138613141	138613141	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57419873	57419873	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP6	2172	broad.mit.edu	37	5	159640816	159640816	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14765939	14765939	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM113A	64773	broad.mit.edu	37	20	2816230	2816230	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120C	54954	broad.mit.edu	37	X	54184102	54184102	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM134A	79137	broad.mit.edu	37	2	220045542	220045542	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175526171	175526171	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM161B	145483	broad.mit.edu	37	14	74411034	74411034	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74095433	74095433	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74096686	74096686	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171B	165215	broad.mit.edu	37	2	187615999	187615999	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171B	165215	broad.mit.edu	37	2	187626765	187626765	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171B	165215	broad.mit.edu	37	2	187627596	187627596	+	3'UTR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM177B	400823	broad.mit.edu	37	1	222920374	222920374	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM181A	90050	broad.mit.edu	37	14	94395260	94395261	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM183B	340286	broad.mit.edu	37	7	38725230	38725230	+	3'UTR	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A1	407738	broad.mit.edu	37	3	68194260	68194260	+	Intron	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM20B	9917	broad.mit.edu	37	1	179033164	179033164	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM22D	728130	broad.mit.edu	37	10	89118103	89118103	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40B	57464	broad.mit.edu	37	7	129091374	129091374	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B2	170067	broad.mit.edu	37	X	24329527	24329527	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM49A	81553	broad.mit.edu	37	2	16746923	16746923	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	11986273	11986273	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71F1	84691	broad.mit.edu	37	7	128363286	128363286	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM76B	143684	broad.mit.edu	37	11	95504852	95504852	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM82B	51115	broad.mit.edu	37	8	87517343	87517343	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83C	128876	broad.mit.edu	37	20	33876450	33876450	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98C	147965	broad.mit.edu	37	19	38899434	38899434	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9A	171482	broad.mit.edu	37	X	8761846	8761846	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCC	2176	broad.mit.edu	37	9	97876976	97876976	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10084739	10084739	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANK1	92565	broad.mit.edu	37	10	127693550	127693550	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163099430	163099430	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92538341	92538341	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126402805	126402805	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48787277	48787277	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127611615	127611615	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL17	64839	broad.mit.edu	37	5	107684001	107684001	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL21	26223	broad.mit.edu	37	5	135272755	135272755	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO43	286151	broad.mit.edu	37	8	101153930	101153930	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO9	26268	broad.mit.edu	37	6	52957177	52957177	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1A	2205	broad.mit.edu	37	1	159274015	159274015	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157737387	157737387	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FECH	2235	broad.mit.edu	37	18	55247342	55247342	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L4	80307	broad.mit.edu	37	20	34176548	34176548	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124985586	124985586	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125081775	125081775	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FETUB	26998	broad.mit.edu	37	3	186370413	186370413	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD3	89846	broad.mit.edu	37	9	95797930	95797930	+	3'UTR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF12	2257	broad.mit.edu	37	3	192053165	192053165	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF12	2257	broad.mit.edu	37	3	192078262	192078262	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL1	2273	broad.mit.edu	37	X	135279219	135279219	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL1	2273	broad.mit.edu	37	X	135290607	135290607	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL5	9457	broad.mit.edu	37	6	97058521	97058521	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34081919	34081919	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1L	11259	broad.mit.edu	37	3	99568152	99568154	+	In_Frame_Del	DEL	TTC	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72712105	72712105	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152277574	152277574	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142505442	142505442	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43950	347127	broad.mit.edu	37	9	84532571	84532571	+	3'UTR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLOT2	2319	broad.mit.edu	37	17	27216019	27216019	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240370908	240370908	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240371074	240371074	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240371084	240371084	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240492626	240492626	+	Intron	DEL	T	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240555700	240555700	+	Intron	SNP	A	G	G	rs113456088		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171227270	171227270	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO3	2328	broad.mit.edu	37	1	171079894	171079894	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1NB	158521	broad.mit.edu	37	X	147090235	147090235	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172025273	172025273	+	Silent	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49204671	49204671	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXA2	3170	broad.mit.edu	37	20	22563800	22563800	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXB2	442425	broad.mit.edu	37	9	79635338	79635338	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXD4L5	653427	broad.mit.edu	37	9	70177795	70177795	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXD4	2298	broad.mit.edu	37	9	116735	116735	+	3'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXI1	2299	broad.mit.edu	37	5	169535194	169535194	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP1	27086	broad.mit.edu	37	3	71037319	71037319	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXR1	283150	broad.mit.edu	37	11	118849643	118849643	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXRED1	55572	broad.mit.edu	37	11	126141434	126141434	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79199931	79199931	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79297024	79297024	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39448686	39448686	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD7	90167	broad.mit.edu	37	X	131264787	131264787	+	5'Flank	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12725695	12725695	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12728532	12728532	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49190148	49190148	+	Silent	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49295382	49295382	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTMT	94033	broad.mit.edu	37	5	121187928	121187928	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39202772	39202772	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29541780	29541780	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29542555	29542555	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101151282	101151282	+	Silent	SNP	G	T	T	rs55677951		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161300031	161300031	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161324018	161324018	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161115927	161115927	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26812859	26812859	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46099399	46099399	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151815584	151815584	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89908038	89908038	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAK	2580	broad.mit.edu	37	4	860764	860764	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST3	89792	broad.mit.edu	37	11	65810536	65810536	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT8	26290	broad.mit.edu	37	12	4854524	4854524	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16261186	16261186	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L2	246176	broad.mit.edu	37	17	34072748	34072748	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9822901	9822901	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP1	2633	broad.mit.edu	37	1	89521892	89521892	+	Missense_Mutation	SNP	C	T	T	rs139042305		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP7	388646	broad.mit.edu	37	1	89616169	89616169	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCG	2641	broad.mit.edu	37	2	163003725	163003725	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCG	2641	broad.mit.edu	37	2	163003758	163003758	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCH1	2643	broad.mit.edu	37	14	55309739	55309739	+	3'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM1	8521	broad.mit.edu	37	6	52999205	52999205	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120592790	120592790	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72618364	72618364	+	Silent	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF10	2662	broad.mit.edu	37	10	48426633	48426633	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD5	81544	broad.mit.edu	37	11	75160019	75160019	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEM	2669	broad.mit.edu	37	8	95262773	95262774	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFI1B	8328	broad.mit.edu	37	9	135862119	135862119	+	Silent	SNP	C	T	T	rs140302929	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55216093	55216093	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGA3	23163	broad.mit.edu	37	17	73237030	73237030	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGNBP2	79893	broad.mit.edu	37	17	34941772	34941772	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT7	2686	broad.mit.edu	37	20	33451081	33451081	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH1	2688	broad.mit.edu	37	17	61995703	61995703	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF2	26058	broad.mit.edu	37	2	233671355	233671355	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPR	2696	broad.mit.edu	37	19	46184982	46184982	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJC1	10052	broad.mit.edu	37	17	42882068	42882068	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1	2720	broad.mit.edu	37	3	33059851	33059851	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI1	2735	broad.mit.edu	37	12	57865470	57865470	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151208695	151208695	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151231016	151231016	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14550574	14550574	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLTP	51228	broad.mit.edu	37	12	110290384	110290384	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58605978	58605978	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMIP	51291	broad.mit.edu	37	19	19745301	19745301	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57429020	57429020	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57485473	57485473	+	Intron	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAT3	346562	broad.mit.edu	37	7	80091554	80091554	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNGT1	2792	broad.mit.edu	37	7	93536082	93536082	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL3L	54552	broad.mit.edu	37	X	54569523	54569523	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133357432	133357432	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6B	55889	broad.mit.edu	37	15	72954823	72954823	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLT1B	51026	broad.mit.edu	37	12	21659867	21659867	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155741067	155741067	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH8	23131	broad.mit.edu	37	17	42475588	42475588	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPBP1L1	60313	broad.mit.edu	37	1	46095229	46095229	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48976099	48976099	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6B	2824	broad.mit.edu	37	X	13825686	13825686	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135455156	135455156	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR115	221393	broad.mit.edu	37	6	47682166	47682166	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142711495	142711495	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131622690	131622690	+	Silent	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR151	134391	broad.mit.edu	37	5	145894570	145894570	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25861626	25861626	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR64	10149	broad.mit.edu	37	X	19042029	19042029	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR65	8477	broad.mit.edu	37	14	88477568	88477569	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP1	9737	broad.mit.edu	37	X	101910920	101910920	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123469825	123469825	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1C	54762	broad.mit.edu	37	3	113638696	113638696	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153077664	153077664	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122532532	122532532	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105836774	105836774	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN1	2902	broad.mit.edu	37	9	140040246	140040246	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN1	2902	broad.mit.edu	37	9	140058239	140058239	+	Silent	SNP	C	T	T	rs143098819		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9858499	9858499	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146480657	146480657	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88583026	88583026	+	Intron	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126172989	126172989	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2H3	2967	broad.mit.edu	37	12	124144730	124144730	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657736	72657736	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106680949	106680949	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106810821	106810821	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBL2	375513	broad.mit.edu	37	6	58252670	58252670	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H2AFX	3014	broad.mit.edu	37	11	118965693	118965693	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122640887	122640887	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR1	3061	broad.mit.edu	37	1	32086599	32086599	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55119932	55119932	+	Splice_Site	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC5	10014	broad.mit.edu	37	17	42156292	42156292	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18633405	18633405	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18869045	18869045	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41058230	41058230	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD3	79654	broad.mit.edu	37	1	45475600	45475600	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELT	391723	broad.mit.edu	37	4	185940984	185940984	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM	220296	broad.mit.edu	37	11	124794531	124794531	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65409517	65409517	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65428069	65428069	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28441571	28441571	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28478365	28478365	+	Silent	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91859777	91859777	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81339449	81339449	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222717515	222717515	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222721223	222721223	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIPK1	204851	broad.mit.edu	37	1	114515703	114515703	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIRIP3	8479	broad.mit.edu	37	16	30005561	30005561	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AE	3012	broad.mit.edu	37	6	26217622	26217622	+	3'UTR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3B	8358	broad.mit.edu	37	6	26033861	26033861	+	5'Flank	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3D	8351	broad.mit.edu	37	6	26197400	26197400	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BE	8349	broad.mit.edu	37	1	149857906	149857906	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	42047885	42047885	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71075622	71075622	+	5'Flank	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71142152	71142152	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DQA1	3117	broad.mit.edu	37	6	32609933	32609933	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DQA2	3118	broad.mit.edu	37	6	32713752	32713752	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-F	3134	broad.mit.edu	37	6	29692182	29692182	+	Silent	SNP	C	T	T	rs138293991	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-J	3137	broad.mit.edu	37	6	29974434	29974434	+	5'UTR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HM13	81502	broad.mit.edu	37	20	30136875	30136875	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185931698	185931698	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186084074	186084074	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186099268	186099268	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNMT	3176	broad.mit.edu	37	2	138722049	138722049	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPM	4670	broad.mit.edu	37	19	8530150	8530150	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD13	3239	broad.mit.edu	37	2	176957939	176957939	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD4	3233	broad.mit.edu	37	2	177016886	177016886	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS4	89781	broad.mit.edu	37	22	26864523	26864523	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186394866	186394866	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26147016	26147016	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSDL2	84263	broad.mit.edu	37	9	115216466	115216466	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPBP1	23640	broad.mit.edu	37	19	55776856	55776856	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3A	3359	broad.mit.edu	37	11	113860292	113860292	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDE	3416	broad.mit.edu	37	10	94264609	94264609	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA6	3443	broad.mit.edu	37	9	21350557	21350557	+	Silent	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT57	55081	broad.mit.edu	37	3	107882459	107882459	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP2	10644	broad.mit.edu	37	3	185541031	185541031	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGJ	3512	broad.mit.edu	37	4	71527723	71527723	+	Intron	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF8	93185	broad.mit.edu	37	1	160064700	160064700	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF1	10320	broad.mit.edu	37	7	50459490	50459490	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18R1	8809	broad.mit.edu	37	2	103003409	103003409	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18R1	8809	broad.mit.edu	37	2	103013338	103013338	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL19	29949	broad.mit.edu	37	1	206972373	206972373	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22RA2	116379	broad.mit.edu	37	6	137468974	137468974	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL28A	282616	broad.mit.edu	37	19	39760495	39760495	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RA	3559	broad.mit.edu	37	10	6104125	6104126	+	5'UTR	INS	-	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RB	3560	broad.mit.edu	37	22	37524342	37524342	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3144499	3144499	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILK	3611	broad.mit.edu	37	11	6631346	6631346	+	Intron	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMP2L	83943	broad.mit.edu	37	7	111034908	111034908	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING1	3621	broad.mit.edu	37	13	111367917	111367918	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41730010	41730010	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INMT	11185	broad.mit.edu	37	7	30791821	30791821	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80E	283899	broad.mit.edu	37	16	30012022	30012022	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80E	283899	broad.mit.edu	37	16	30012182	30012182	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143094812	143094812	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS1	26173	broad.mit.edu	37	7	1538937	1538937	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS3	65123	broad.mit.edu	37	1	153736716	153736716	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPMK	253430	broad.mit.edu	37	10	59956169	59956169	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75969934	75969934	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC3	440073	broad.mit.edu	37	12	247543	247543	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK2	3656	broad.mit.edu	37	3	10255175	10255175	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS1	3667	broad.mit.edu	37	2	227661713	227661713	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISLR	3671	broad.mit.edu	37	15	74467295	74467295	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68620471	68620471	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182344794	182344794	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182388919	182388919	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182396570	182396570	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15649534	15649534	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31409059	31409059	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31341697	31341697	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187531437	187531437	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB8	3696	broad.mit.edu	37	7	20431053	20431053	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52822006	52822006	+	Missense_Mutation	SNP	C	G	G	rs145881645	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54783437	54783437	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7618544	7618544	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7697524	7697524	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156671325	156671325	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITM2A	9452	broad.mit.edu	37	X	78618355	78618355	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IZUMO1	284359	broad.mit.edu	37	19	49245225	49245225	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65323402	65323402	+	Silent	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK2	3717	broad.mit.edu	37	9	5072540	5072540	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JARID2	3720	broad.mit.edu	37	6	15501370	15501370	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JHDM1D	80853	broad.mit.edu	37	7	139833402	139833402	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64967837	64967837	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170367047	170367047	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111146418	111146418	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA3	3738	broad.mit.edu	37	1	111216069	111216070	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA3	3738	broad.mit.edu	37	1	111216142	111216142	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30033352	30033352	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB2	8514	broad.mit.edu	37	1	6145239	6145239	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNG4	93107	broad.mit.edu	37	16	84256316	84256316	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63416960	63416960	+	Silent	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ8	3764	broad.mit.edu	37	12	21918522	21918522	+	3'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88737097	88737097	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK16	83795	broad.mit.edu	37	6	39286895	39286895	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78674828	78674828	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB1	3779	broad.mit.edu	37	5	169805970	169805970	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB4	27345	broad.mit.edu	37	12	70794139	70794139	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN2	3781	broad.mit.edu	37	5	113699509	113699509	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN2	3781	broad.mit.edu	37	5	113740528	113740528	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215747182	215747182	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44176975	44176975	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELR3	11015	broad.mit.edu	37	22	38864286	38864286	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELR3	11015	broad.mit.edu	37	22	38875670	38875670	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4A	9682	broad.mit.edu	37	1	44133828	44133828	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4B	23030	broad.mit.edu	37	19	5047745	5047745	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202702851	202702851	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM6B	23135	broad.mit.edu	37	17	7749569	7749569	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55971000	55971000	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55976850	55976850	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55980506	55980506	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142651280	142651280	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142658287	142658287	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHNYN	23351	broad.mit.edu	37	14	24901200	24901200	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26942339	26942339	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0317	9870	broad.mit.edu	37	14	75150054	75150054	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34791804	34791804	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0391	9692	broad.mit.edu	37	14	35628258	35628258	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0913	23053	broad.mit.edu	37	10	75561137	75561137	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57181085	57181085	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1267	284058	broad.mit.edu	37	17	44116524	44116525	+	Missense_Mutation	DNP	AC	CA	CA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94044364	94044364	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94084637	94084637	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1467	57613	broad.mit.edu	37	12	13228955	13228955	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1524	57650	broad.mit.edu	37	3	108304034	108304034	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36888960	36888960	+	5'UTR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20764905	20764905	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8926244	8926244	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13A	63971	broad.mit.edu	37	6	17777458	17777458	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16493399	16493399	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21011435	21011435	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21039940	21039940	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72348945	72348945	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1C	10749	broad.mit.edu	37	17	4905404	4905404	+	Silent	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91489016	91489016	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91497359	91497359	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3C	3797	broad.mit.edu	37	2	26204527	26204527	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154394127	154394127	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF7	374654	broad.mit.edu	37	15	90190167	90190168	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFC3	3801	broad.mit.edu	37	16	57805055	57805055	+	Intron	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55341702	55341702	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36348297	36348297	+	Missense_Mutation	SNP	G	T	T	rs147522074	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158046019	158046019	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF11	8462	broad.mit.edu	37	2	10188397	10188397	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC5	57542	broad.mit.edu	37	12	27933771	27933771	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL14	57565	broad.mit.edu	37	18	30349928	30349928	+	Silent	SNP	C	A	A	rs141522910		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL15	80311	broad.mit.edu	37	X	24006319	24006319	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL7	55975	broad.mit.edu	37	7	23145690	23145690	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRD1	3824	broad.mit.edu	37	12	10464034	10464034	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241750108	241750108	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135027556	135027556	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123097813	123097813	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123098300	123098300	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123098362	123098362	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT24	192666	broad.mit.edu	37	17	38859404	38859404	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT2	3849	broad.mit.edu	37	12	53040844	53040844	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT32	3882	broad.mit.edu	37	17	39623522	39623522	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-12	386685	broad.mit.edu	37	21	46117307	46117307	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-2	337959	broad.mit.edu	37	21	31744160	31744161	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR2	283455	broad.mit.edu	37	12	117992964	117992964	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6959383	6959383	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112462132	112462132	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60885533	60885534	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60885969	60885969	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60886057	60886057	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209796374	209796374	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107756607	107756607	+	Splice_Site	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133944389	133944389	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL3	347404	broad.mit.edu	37	X	37514997	37514997	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1	23367	broad.mit.edu	37	5	154173492	154173492	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS1	9113	broad.mit.edu	37	6	150001319	150001319	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136561716	136561716	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16513703	16513703	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	36248607	36248607	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LECT2	3950	broad.mit.edu	37	5	135288490	135288490	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS4	3960	broad.mit.edu	37	19	39294168	39294168	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGMN	5641	broad.mit.edu	37	14	93183807	93183807	+	Splice_Site	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202287133	202287133	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104309700	104309700	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHPP	64077	broad.mit.edu	37	10	126205795	126205795	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75608953	75608953	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55142760	55142760	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54756398	54756398	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN9	286826	broad.mit.edu	37	1	226483578	226483578	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1L	79748	broad.mit.edu	37	15	75111699	75111699	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100101938	100101938	broad.mit.edu	37	13	19879361	19879361	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090295	238090295	+	RNA	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100302640	100302640	broad.mit.edu	37	3	106825039	106825039	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150776	150776	broad.mit.edu	37	2	132276708	132276708	+	5'UTR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148016460	148016461	+	Splice_Site	DNP	CC	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148346594	148346594	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94656224	94656224	+	5'Flank	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC401010	401010	broad.mit.edu	37	2	132201402	132201402	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442421	442421	broad.mit.edu	37	9	66499744	66499744	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550112	550112	broad.mit.edu	37	4	68583023	68583023	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC642846	642846	broad.mit.edu	37	12	9441017	9441017	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC642929	642929	broad.mit.edu	37	9	43147896	43147896	+	5'Flank	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646498	646498	broad.mit.edu	37	3	49227502	49227502	+	5'Flank	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONP1	9361	broad.mit.edu	37	19	5711898	5711899	+	Missense_Mutation	DNP	CG	AC	AC			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONP2	83752	broad.mit.edu	37	16	48290700	48290700	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161005972	161005972	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT2	54947	broad.mit.edu	37	16	55543151	55543151	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82432322	82432322	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82452676	82452676	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82452992	82452992	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62598884	62598884	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62845602	62845602	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62863922	62863922	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62910216	62910216	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62933996	62933996	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99771394	99771394	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188583987	188583987	+	Splice_Site	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH1	23143	broad.mit.edu	37	13	47303002	47303002	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	140992364	140992364	+	Silent	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141115807	141115807	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141299446	141299446	+	Missense_Mutation	SNP	C	G	G	rs111444554		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170012963	170012963	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170031841	170031841	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170031859	170031859	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC23	10233	broad.mit.edu	37	12	7021987	7021987	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC27	80313	broad.mit.edu	37	10	134165200	134165200	+	Missense_Mutation	SNP	G	A	A	rs138072740		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC28	123355	broad.mit.edu	37	15	99825120	99825120	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC41	10489	broad.mit.edu	37	1	46745230	46745230	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC41	10489	broad.mit.edu	37	1	46746159	46746159	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137814	40137814	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52861702	52861702	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70505161	70505161	+	Silent	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC8E	80131	broad.mit.edu	37	19	7965131	7965131	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85626523	85626523	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74649349	74649349	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40643696	40643696	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1905563	1905563	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33589266	33589266	+	Intron	DEL	T	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160765910	160765910	+	5'Flank	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYG1	129530	broad.mit.edu	37	2	99908990	99908990	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235907394	235907394	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACC1	346389	broad.mit.edu	37	7	20198880	20198880	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39812670	39812670	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166985562	166985562	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA6	4105	broad.mit.edu	37	X	151870313	151870313	+	3'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140995587	140995587	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEL2	54551	broad.mit.edu	37	15	23889815	23889815	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEL2	54551	broad.mit.edu	37	15	23890520	23890520	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77764405	77764405	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A1	4124	broad.mit.edu	37	5	109051935	109051935	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A1	4124	broad.mit.edu	37	5	109065175	109065175	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21207866	21207866	+	Splice_Site	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71209277	71209277	+	Missense_Mutation	SNP	C	A	A	rs148357774		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K4	9448	broad.mit.edu	37	2	102456515	102456515	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK1	5594	broad.mit.edu	37	22	22143123	22143123	+	Intron	SNP	G	A	A	rs61763389	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1817877	1817877	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165111490	165111490	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK2	2011	broad.mit.edu	37	11	63656439	63656439	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK2	2011	broad.mit.edu	37	11	63666261	63666261	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST2	23139	broad.mit.edu	37	1	46500535	46500536	+	Missense_Mutation	DNP	TT	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD5	55777	broad.mit.edu	37	2	149247082	149247082	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBOAT1	154141	broad.mit.edu	37	6	20110008	20110008	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC3R	4159	broad.mit.edu	37	20	54824187	54824187	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC2	64087	broad.mit.edu	37	5	70944904	70944904	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC2	64087	broad.mit.edu	37	5	70946038	70946038	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCC	4163	broad.mit.edu	37	5	112389554	112389554	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30672204	30672204	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA1	266727	broad.mit.edu	37	6	37631870	37631870	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47504309	47504309	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90466040	90466040	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151073658	151073658	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED16	10025	broad.mit.edu	37	19	886165	886165	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED17	9440	broad.mit.edu	37	11	93542890	93542890	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED20	9477	broad.mit.edu	37	6	41874858	41874858	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131903928	131903928	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42840851	42840851	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEP1A	4224	broad.mit.edu	37	6	46800982	46800982	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT11D1	64745	broad.mit.edu	37	14	21463281	21463281	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL7B	196410	broad.mit.edu	37	12	56075645	56075645	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD11	79157	broad.mit.edu	37	17	74765921	74765921	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD3	113655	broad.mit.edu	37	8	145736023	145736023	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141726897	141726897	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141752684	141752684	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141756618	141756618	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141768474	141768474	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4C	25834	broad.mit.edu	37	12	86373386	86373386	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC42105	167359	broad.mit.edu	37	5	43280085	43280085	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICALL2	79778	broad.mit.edu	37	7	1476417	1476417	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MID2	11043	broad.mit.edu	37	X	107084007	107084007	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR103-2	406896	broad.mit.edu	37	20	3898150	3898150	+	RNA	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1197	100302250	broad.mit.edu	37	14	101491897	101491897	+	5'Flank	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR133B	442890	broad.mit.edu	37	6	52013774	52013774	+	RNA	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR487B	664616	broad.mit.edu	37	14	101512734	101512734	+	5'Flank	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR490	574443	broad.mit.edu	37	7	136587922	136587922	+	RNA	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR521-1	574494	broad.mit.edu	37	19	54251763	54251763	+	5'Flank	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR655	724025	broad.mit.edu	37	14	101515135	101515135	+	5'Flank	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP1	4312	broad.mit.edu	37	11	102666207	102666207	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102573508	102573508	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90856447	90856447	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90857244	90857244	+	Missense_Mutation	SNP	A	C	C	rs3756065	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158817535	158817535	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGAT3	346606	broad.mit.edu	37	7	100843632	100843632	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC1	4360	broad.mit.edu	37	10	17949691	17949691	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRE11A	4361	broad.mit.edu	37	11	94203630	94203630	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A12	54860	broad.mit.edu	37	11	60269415	60269415	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH4	4438	broad.mit.edu	37	1	76347000	76347000	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI1	4440	broad.mit.edu	37	12	120785154	120785154	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSL2	55167	broad.mit.edu	37	3	135913854	135913854	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSN	4478	broad.mit.edu	37	X	64958393	64958393	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSTN	2660	broad.mit.edu	37	2	190927318	190927318	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTA3	57504	broad.mit.edu	37	2	42836680	42836680	+	Silent	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTF1	4520	broad.mit.edu	37	1	38281087	38281087	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTG1	92170	broad.mit.edu	37	10	135233637	135233637	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11292494	11292494	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30658234	30658234	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237016235	237016235	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29598829	29598829	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9006351	9006351	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9011253	9011253	+	Intron	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9018068	9018068	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9038471	9038471	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100681897	100681897	+	Silent	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC4	4585	broad.mit.edu	37	3	195475697	195475697	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1029498	1029498	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49409663	49409663	+	Silent	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10398481	10398481	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10408159	10408159	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10428484	10428484	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10435251	10435251	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10533025	10533025	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10537274	10537274	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10363241	10363241	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7B	57644	broad.mit.edu	37	20	33577898	33577898	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10315661	10315661	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL1	4632	broad.mit.edu	37	2	211163125	211163125	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL2	4633	broad.mit.edu	37	12	111358181	111358181	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK2	85366	broad.mit.edu	37	20	30409594	30409594	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK3	91807	broad.mit.edu	37	16	46746759	46746759	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK4	340156	broad.mit.edu	37	6	2675455	2675455	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109475688	109475688	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109777466	109777466	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26157129	26157129	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26294343	26294343	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26423427	26423427	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1A	4640	broad.mit.edu	37	12	57423272	57423272	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31105561	31105561	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1F	4542	broad.mit.edu	37	19	8601354	8601354	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1G	64005	broad.mit.edu	37	7	45014658	45014658	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1G	64005	broad.mit.edu	37	7	45015002	45015004	+	Intron	TNP	GTC	AAA	AAA	rs149282135	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26462571	26462571	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171264477	171264477	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171371431	171371431	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76542705	76542705	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128354111	128354111	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128394410	128394410	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95132881	95132881	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2054265	2054267	+	Intron	DEL	TCT	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69882003	69882003	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62831117	62831117	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89885665	89885665	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL1	10004	broad.mit.edu	37	11	64820931	64820931	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101833786	101833786	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19905765	19905765	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20119101	20119101	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15644269	15644269	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145311775	145311775	+	Intron	SNP	T	C	C	rs59196149	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	146253007	146253007	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	146399658	146399658	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF14	25832	broad.mit.edu	37	1	148015775	148015775	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16892787	16892787	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16907946	16907946	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120377484	120377484	+	Silent	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120379909	120379909	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH	23397	broad.mit.edu	37	2	97030231	97030231	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124922574	124922574	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152417259	152417259	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152544927	152544927	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFH	4744	broad.mit.edu	37	22	29885826	29885826	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK9	91754	broad.mit.edu	37	14	75580004	75580004	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20959507	20959507	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45059341	45059341	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45169922	45169922	+	Silent	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU4	129807	broad.mit.edu	37	2	242755785	242755785	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEURL3	93082	broad.mit.edu	37	2	97165092	97165092	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROD1	4760	broad.mit.edu	37	2	182542406	182542406	+	3'UTR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF2	4771	broad.mit.edu	37	22	30057102	30057102	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC3	4775	broad.mit.edu	37	16	68225567	68225567	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBID	84807	broad.mit.edu	37	19	36386965	36386965	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFX1	4799	broad.mit.edu	37	9	33332521	33332521	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFYB	4801	broad.mit.edu	37	12	104519783	104519783	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGB	58157	broad.mit.edu	37	14	77732878	77732878	+	3'UTR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236195668	236195668	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52534918	52534918	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124979567	124979567	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173525373	173525373	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173525445	173525445	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5810837	5810837	+	3'UTR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC3	197358	broad.mit.edu	37	16	3614852	3614852	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55494845	55494845	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247587920	247587920	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56538929	56538929	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55449458	55449458	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56467478	56467478	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56477780	56477780	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56477782	56477782	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56481798	56481798	+	Intron	DEL	C	-	-	rs78902419	byFrequency;by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120547953	120547953	+	Silent	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH3	4854	broad.mit.edu	37	19	15299958	15299958	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32180777	32180778	+	Intron	DNP	GG	TT	TT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA1	4857	broad.mit.edu	37	14	26949200	26949200	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOXA1	10811	broad.mit.edu	37	9	140327640	140327640	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPBWR1	2831	broad.mit.edu	37	8	53852868	53852868	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP3	27031	broad.mit.edu	37	3	132418735	132418735	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP4	261734	broad.mit.edu	37	1	6021958	6021958	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPLOC4	55666	broad.mit.edu	37	17	79563220	79563220	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY1R	4886	broad.mit.edu	37	4	164246587	164246587	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR4A2	4929	broad.mit.edu	37	2	157183351	157183351	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200116598	200116598	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115357723	115357723	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84118523	84118523	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84118652	84118652	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50280529	50280529	+	Silent	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50464028	50464028	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50850443	50850443	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64427723	64427723	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79176097	79176097	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176637041	176637041	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1B	93034	broad.mit.edu	37	2	18745415	18745415	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132180014	132180014	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107867256	107867256	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107963809	107963809	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTSR1	4923	broad.mit.edu	37	20	61341142	61341142	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD1	84955	broad.mit.edu	37	8	110255470	110255470	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD1	84955	broad.mit.edu	37	8	110257660	110257660	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMA1	4926	broad.mit.edu	37	11	71725417	71725418	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP153	9972	broad.mit.edu	37	6	17669394	17669395	+	Intron	DNP	CT	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101091631	101091631	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101096538	101096538	+	Intron	DEL	A	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH1	30010	broad.mit.edu	37	7	8791192	8791192	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODAM	54959	broad.mit.edu	37	4	71063865	71063865	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGT	8473	broad.mit.edu	37	X	70782807	70782807	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2A	169611	broad.mit.edu	37	9	127572612	127572612	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67413739	67413739	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN5	221391	broad.mit.edu	37	6	47776036	47776036	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPTN	10133	broad.mit.edu	37	10	13166046	13166046	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6867090	6867090	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10AG1	282770	broad.mit.edu	37	11	55735447	55735447	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G7	390265	broad.mit.edu	37	11	123909167	123909167	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123893745	123893745	+	Missense_Mutation	SNP	C	A	A	rs79715120	byFrequency;by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123894622	123894622	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J1	26476	broad.mit.edu	37	1	159410333	159410333	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390407	158390407	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57995652	57995652	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11L1	391189	broad.mit.edu	37	1	248004658	248004658	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14A16	284532	broad.mit.edu	37	1	247978357	247978357	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14A16	284532	broad.mit.edu	37	1	247978624	247978624	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14A16	284532	broad.mit.edu	37	1	247979040	247979040	+	5'Flank	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1F1	4992	broad.mit.edu	37	16	3254739	3254739	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1F2P	26184	broad.mit.edu	37	16	3265901	3265901	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG1	144125	broad.mit.edu	37	11	6807060	6807060	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG2	338755	broad.mit.edu	37	11	6789238	6789238	+	Nonstop_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B3	442184	broad.mit.edu	37	6	29054630	29054630	+	Silent	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B6	26212	broad.mit.edu	37	6	27925657	27925657	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F1	26211	broad.mit.edu	37	7	143657039	143657039	+	5'UTR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F1	26211	broad.mit.edu	37	7	143657207	143657207	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G3	81469	broad.mit.edu	37	1	247769356	247769356	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G3	81469	broad.mit.edu	37	1	247769616	247769616	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M1P	388762	broad.mit.edu	37	1	248285405	248285405	+	5'Flank	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402587	248402587	+	Silent	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402589	248402589	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M7	391196	broad.mit.edu	37	1	248487472	248487472	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T11	127077	broad.mit.edu	37	1	248789925	248789925	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T27	403239	broad.mit.edu	37	1	248813749	248813749	+	Missense_Mutation	SNP	G	T	T	rs151135924	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T27	403239	broad.mit.edu	37	1	248813773	248813773	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T34	127068	broad.mit.edu	37	1	248737461	248737461	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55136241	55136241	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4B1	119765	broad.mit.edu	37	11	48238559	48238559	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515953	51515953	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D11	219986	broad.mit.edu	37	11	59271968	59271968	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D2	124538	broad.mit.edu	37	17	56247594	56247594	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20295722	20295722	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20296242	20296242	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B6	390058	broad.mit.edu	37	11	5373151	5373151	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51D1	390038	broad.mit.edu	37	11	4661732	4661732	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51Q1	390061	broad.mit.edu	37	11	5444012	5444012	+	Silent	SNP	C	A	A	rs146457615		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5969240	5969240	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A4	120793	broad.mit.edu	37	11	6023420	6023420	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5A1	219982	broad.mit.edu	37	11	59211574	59211574	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B12	390191	broad.mit.edu	37	11	58207086	58207086	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D13	390142	broad.mit.edu	37	11	55541105	55541106	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563504	55563504	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761571	55761571	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H15	403274	broad.mit.edu	37	3	97888239	97888240	+	Missense_Mutation	DNP	GG	TT	TT	rs138282085	byFrequency;by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L1	219437	broad.mit.edu	37	11	55579021	55579021	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T3	390154	broad.mit.edu	37	11	56019822	56019823	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6B1	135946	broad.mit.edu	37	7	143701184	143701184	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C76	390326	broad.mit.edu	37	12	55820153	55820153	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K2	81448	broad.mit.edu	37	1	158670237	158670237	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7D4	125958	broad.mit.edu	37	19	9325354	9325354	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B12	219858	broad.mit.edu	37	11	124413576	124413576	+	5'Flank	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56127732	56127732	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K3	219473	broad.mit.edu	37	11	56086245	56086245	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57947251	57947251	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC3L	23595	broad.mit.edu	37	6	88331735	88331735	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC5L	5001	broad.mit.edu	37	7	103828716	103828716	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24892206	24892206	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL6	114880	broad.mit.edu	37	2	179214117	179214117	+	Splice_Site	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26686933	26686933	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOL1	131149	broad.mit.edu	37	3	161220164	161220164	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP2	92736	broad.mit.edu	37	17	72923430	72923430	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP3	347741	broad.mit.edu	37	17	72938166	72938166	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXGR1	27199	broad.mit.edu	37	13	97639078	97639078	+	Silent	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX1	5023	broad.mit.edu	37	17	3819483	3819483	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC4	8761	broad.mit.edu	37	1	40034456	40034456	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90690624	90690624	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103240674	103240674	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103240676	103240676	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110459751	110459751	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9524994	9524994	+	Intron	SNP	C	A	A	rs113012559		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112687384	112687384	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176525707	176525707	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	119065173	119065173	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPSS2	9060	broad.mit.edu	37	10	89473906	89473906	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD6G	84552	broad.mit.edu	37	18	77960844	77960844	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162989945	162989945	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226580055	226580055	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134072600	134072600	+	Silent	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134073887	134073887	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91134268	91134268	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55568489	55568489	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55569054	55569054	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55582436	55582436	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58208522	58208522	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH20	64881	broad.mit.edu	37	13	61986893	61986893	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140262628	140262628	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA4	56144	broad.mit.edu	37	5	140188385	140188385	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA6	56142	broad.mit.edu	37	5	140209566	140209566	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB16	57717	broad.mit.edu	37	5	140564055	140564055	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB5	26167	broad.mit.edu	37	5	140515534	140515534	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB5	26167	broad.mit.edu	37	5	140515984	140515984	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140723724	140723724	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140737040	140737040	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF3	10336	broad.mit.edu	37	4	728712	728712	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56140312	56140312	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82581843	82581843	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82764747	82764747	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117099085	117099085	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT1B	9468	broad.mit.edu	37	X	24608167	24608167	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD10	11235	broad.mit.edu	37	3	167414840	167414840	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165756861	165756861	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178494168	178494168	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178681583	178681583	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31890348	31890348	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31918557	31918557	+	Intron	SNP	C	A	A	rs137899559	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66723040	66723040	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66838395	66838395	+	3'UTR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144874005	144874005	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7B	27115	broad.mit.edu	37	6	136494944	136494944	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFC	56034	broad.mit.edu	37	4	157731921	157731921	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55125098	55125098	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM2	64236	broad.mit.edu	37	8	22439036	22439036	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDRG1	81572	broad.mit.edu	37	20	30533722	30533722	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39875953	39875953	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15128365	15128365	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31983859	31983859	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41957357	41957357	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG10	23089	broad.mit.edu	37	7	94293471	94293471	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELI2	57161	broad.mit.edu	37	14	56757004	56757004	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX2	5828	broad.mit.edu	37	8	77895970	77895970	+	Missense_Mutation	SNP	C	A	A	rs13251732		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFN1	5216	broad.mit.edu	37	17	4849269	4849269	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFN1	5216	broad.mit.edu	37	17	4849328	4849328	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD1	84547	broad.mit.edu	37	6	28254867	28254867	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230473017	230473017	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5	5239	broad.mit.edu	37	9	71098889	71098889	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11068308	11068308	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21A	51317	broad.mit.edu	37	11	46098392	46098392	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB1	23187	broad.mit.edu	37	11	118495567	118495567	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHOSPHO2	493911	broad.mit.edu	37	2	170557703	170557703	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHOSPHO2	493911	broad.mit.edu	37	2	170558124	170558124	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHTF2	57157	broad.mit.edu	37	7	77567233	77567233	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KA	5297	broad.mit.edu	37	22	21188758	21188758	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PICK1	9463	broad.mit.edu	37	22	38468540	38468540	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGM	93183	broad.mit.edu	37	1	160000856	160000856	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGN	23556	broad.mit.edu	37	18	59821947	59821947	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18715656	18715656	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178921542	178921542	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CB	5291	broad.mit.edu	37	3	138374338	138374338	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNA	5306	broad.mit.edu	37	17	1444790	1444790	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130831590	130831590	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81183300	81183300	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2L2	27039	broad.mit.edu	37	5	137271488	137271488	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110412648	110412648	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110535564	110535564	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51524450	51524450	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51920329	51920329	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51938335	51938335	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA1A	51365	broad.mit.edu	37	3	119337151	119337151	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G12B	84647	broad.mit.edu	37	10	74714370	74714370	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2F	64600	broad.mit.edu	37	1	20469903	20469903	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G7	7941	broad.mit.edu	37	6	46680036	46680036	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160807914	160807914	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59811015	59811015	+	Silent	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLBD2	196463	broad.mit.edu	37	12	113822053	113822053	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8770175	8770175	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242271246	242271246	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144998619	144998619	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16824580	16824580	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132109716	132109716	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151107479	151107479	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151121977	151121977	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHO1	51177	broad.mit.edu	37	1	150123304	150123304	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161152034	161152034	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20290747	20290747	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20290762	20290762	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131872072	131872072	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMM2	5373	broad.mit.edu	37	16	8906833	8906833	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190682749	190682749	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNOC	5368	broad.mit.edu	37	8	28186863	28186863	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA8	50640	broad.mit.edu	37	7	108150872	108150872	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POC1A	25886	broad.mit.edu	37	3	52130543	52130543	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84562267	84562267	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLL	27343	broad.mit.edu	37	10	103344509	103344509	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2B	5431	broad.mit.edu	37	4	57873086	57873086	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POP1	10940	broad.mit.edu	37	8	99169968	99169968	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16279360	16279360	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F1	5451	broad.mit.edu	37	1	167341087	167341087	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F3	25833	broad.mit.edu	37	11	120175779	120175779	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39504268	39504268	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23815726	23815727	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARG	5468	broad.mit.edu	37	3	12458631	12458631	+	Silent	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF1	5475	broad.mit.edu	37	X	18768099	18768099	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81732894	81732894	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP1	8496	broad.mit.edu	37	12	27835728	27835728	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPHLN1	51535	broad.mit.edu	37	12	42792875	42792875	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPL	5493	broad.mit.edu	37	16	4960772	4960772	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1D	8493	broad.mit.edu	37	17	58725272	58725272	+	Frame_Shift_Del	DEL	T	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1D	8493	broad.mit.edu	37	17	58725327	58725327	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1G	5496	broad.mit.edu	37	2	27607030	27607030	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202464798	202464798	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R14C	81706	broad.mit.edu	37	6	150538010	150538010	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R1B	5519	broad.mit.edu	37	11	111622952	111622952	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	145972654	145972654	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146086564	146086564	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3A	5523	broad.mit.edu	37	3	135768223	135768223	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5E	5529	broad.mit.edu	37	14	63888614	63888614	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94703803	94703803	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94731173	94731173	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94731755	94731755	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM10	56980	broad.mit.edu	37	11	129785510	129785510	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70978417	70978417	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM15	63977	broad.mit.edu	37	21	43246293	43246293	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522881	23522881	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREPL	9581	broad.mit.edu	37	2	44571703	44571703	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68939592	68939592	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRH1	5554	broad.mit.edu	37	12	11036773	11036773	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIC285	85441	broad.mit.edu	37	20	62198635	62198635	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24135066	24135066	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCI	5584	broad.mit.edu	37	3	169952990	169952990	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	54011288	54011288	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT3	10196	broad.mit.edu	37	11	20486092	20486092	+	Silent	SNP	G	T	T	rs149199835		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT5	10419	broad.mit.edu	37	14	23397456	23397456	+	Intron	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT5	10419	broad.mit.edu	37	14	23398556	23398556	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150310579	150310579	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150321807	150321807	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF4B	8899	broad.mit.edu	37	6	4056899	4056899	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1559518	1559518	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1564752	1564752	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRG1	5638	broad.mit.edu	37	X	37312670	37312670	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRX1	5396	broad.mit.edu	37	1	170689119	170689119	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS12	8492	broad.mit.edu	37	4	119229564	119229564	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS12	8492	broad.mit.edu	37	4	119237555	119237555	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS48	345062	broad.mit.edu	37	4	152204272	152204272	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79259661	79259661	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79321012	79321012	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD4	23550	broad.mit.edu	37	2	113951608	113951608	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43233590	43233590	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43527565	43527565	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43762511	43762511	+	Silent	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA5	5686	broad.mit.edu	37	1	109968974	109968974	+	5'UTR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA6	5687	broad.mit.edu	37	14	35778168	35778168	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA6	5687	broad.mit.edu	37	14	35778193	35778193	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA6	5687	broad.mit.edu	37	14	35778273	35778273	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD12	5718	broad.mit.edu	37	17	65346486	65346486	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD3	5709	broad.mit.edu	37	17	38146160	38146160	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP2	58155	broad.mit.edu	37	1	97235307	97235307	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11579699	11579699	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTDSS1	9791	broad.mit.edu	37	8	97307407	97307407	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIR	5739	broad.mit.edu	37	19	47124657	47124657	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87680174	87680174	+	Silent	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN21	11099	broad.mit.edu	37	14	88970868	88970868	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70949641	70949641	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70949987	70949987	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70954555	70954555	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8331774	8331774	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8499732	8499732	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	8143587	8143587	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15652344	15652344	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121652668	121652668	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121698978	121698978	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM2	23369	broad.mit.edu	37	2	20491354	20491354	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PURA	5813	broad.mit.edu	37	5	139494510	139494510	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL1	5818	broad.mit.edu	37	11	119545239	119545239	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL2	5819	broad.mit.edu	37	19	45375315	45375315	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QARS	5859	broad.mit.edu	37	3	49138142	49138142	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSOX1	5768	broad.mit.edu	37	1	180166391	180166391	+	3'UTR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDM1	23518	broad.mit.edu	37	2	136380227	136380227	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP5	26056	broad.mit.edu	37	2	73339481	73339481	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB28	9364	broad.mit.edu	37	4	13370332	13370332	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP1	22930	broad.mit.edu	37	2	135848566	135848566	+	Splice_Site	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB41	347517	broad.mit.edu	37	X	69504354	69504354	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L1	5890	broad.mit.edu	37	14	68888881	68888881	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RADIL	55698	broad.mit.edu	37	7	4839130	4839130	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RADIL	55698	broad.mit.edu	37	7	4839263	4839263	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP2B	5912	broad.mit.edu	37	3	152880648	152880648	+	Silent	SNP	C	T	T	rs34414975		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF5	9771	broad.mit.edu	37	7	22184600	22184600	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA1	5921	broad.mit.edu	37	5	86676247	86676247	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114784223	114784223	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASIP1	54922	broad.mit.edu	37	19	49227757	49227757	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP9	10741	broad.mit.edu	37	20	18471027	18471027	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM25	58517	broad.mit.edu	37	14	73569704	73569704	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM47	54502	broad.mit.edu	37	4	40439911	40439911	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM6	10180	broad.mit.edu	37	3	50114546	50114546	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H1	149041	broad.mit.edu	37	1	173915621	173915621	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCOR1	23186	broad.mit.edu	37	14	103128621	103128621	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCSD1	92241	broad.mit.edu	37	1	167663339	167663339	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECQL5	9400	broad.mit.edu	37	17	73657728	73657728	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECQL5	9400	broad.mit.edu	37	17	73658542	73658542	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79349907	79349907	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79384319	79384319	+	3'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103194051	103194051	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103236888	103236888	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103290888	103290888	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REM1	28954	broad.mit.edu	37	20	30070119	30070120	+	Frame_Shift_Ins	INS	-	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV1	51455	broad.mit.edu	37	2	100020963	100020963	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO1	57455	broad.mit.edu	37	19	1825947	1825947	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	175956158	175956158	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107048028	107048028	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117252432	117252432	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD3	653489	broad.mit.edu	37	2	107040328	107040328	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS1	5996	broad.mit.edu	37	1	192547448	192547448	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS21	431704	broad.mit.edu	37	1	192335236	192335236	+	Silent	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS3	5998	broad.mit.edu	37	9	116247969	116247969	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	73002750	73002750	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7BP	401190	broad.mit.edu	37	5	63802459	63802459	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241031924	241031924	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241083296	241083296	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDF2	79651	broad.mit.edu	37	17	74470538	74470538	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDF2	79651	broad.mit.edu	37	17	74475819	74475819	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOJ	57381	broad.mit.edu	37	14	63671695	63671695	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104831624	104831624	+	5'UTR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104987691	104987691	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40500652	40500652	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF123	63891	broad.mit.edu	37	3	49737835	49737835	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF139	11236	broad.mit.edu	37	8	125498688	125498688	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF150	57484	broad.mit.edu	37	4	141789444	141789444	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124763628	124763628	+	Splice_Site	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK2	9475	broad.mit.edu	37	2	11484051	11484051	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94495713	94495713	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10466200	10466200	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10469019	10469019	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55533539	55533539	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP3	79657	broad.mit.edu	37	12	48091454	48091454	+	Missense_Mutation	SNP	G	C	C	rs151225713	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113307716	113307716	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10A	4736	broad.mit.edu	37	6	35436137	35436137	+	5'Flank	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA1	6195	broad.mit.edu	37	1	26887626	26887626	+	Splice_Site	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS9	6203	broad.mit.edu	37	19	54711356	54711356	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTN	126638	broad.mit.edu	37	1	152129396	152129396	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRBP1	6238	broad.mit.edu	37	20	17617167	17617167	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP1	8568	broad.mit.edu	37	21	45217390	45217390	+	Silent	SNP	C	A	A	rs148457924	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSU1	6251	broad.mit.edu	37	10	16823921	16823921	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60193858	60193858	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTP2	344892	broad.mit.edu	37	3	187419769	187419769	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92998337	92998337	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38993389	38993389	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237666760	237666760	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237780726	237780726	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237796971	237796971	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237801599	237801599	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237886431	237886431	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237919540	237919540	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947865	237947865	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237972197	237972197	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33926713	33926713	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34130391	34130391	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR2	9294	broad.mit.edu	37	19	10335474	10335474	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAFB	6294	broad.mit.edu	37	19	5654557	5654557	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134988091	134988091	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134990365	134990365	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51175915	51175915	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51176097	51176097	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92764151	92764151	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92732174	92732174	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARDH	1757	broad.mit.edu	37	9	136570127	136570127	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50906112	50906112	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	9853807	9853807	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	9990064	9990064	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAI	286205	broad.mit.edu	37	9	127818240	127818240	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAND3	114821	broad.mit.edu	37	6	28541542	28541542	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCD5	79966	broad.mit.edu	37	4	83719607	83719607	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166859123	166859123	+	Silent	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62021054	62021054	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52180553	52180553	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1G	6340	broad.mit.edu	37	16	23203593	23203593	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDC2	6383	broad.mit.edu	37	8	97614558	97614558	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4285325	4285325	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELE	6401	broad.mit.edu	37	1	169702805	169702805	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83606525	83606525	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84694730	84694730	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84751139	84751139	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3E	9723	broad.mit.edu	37	7	83029608	83029608	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9190652	9190652	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9197405	9197406	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48060921	48060921	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT11	55752	broad.mit.edu	37	4	77917577	77917577	+	Splice_Site	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55914085	55914085	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA11	256394	broad.mit.edu	37	14	94908973	94908973	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB12	89777	broad.mit.edu	37	18	61231325	61231325	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61558726	61558726	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB6	5269	broad.mit.edu	37	6	2949010	2949010	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB7	8710	broad.mit.edu	37	18	61460485	61460485	+	Missense_Mutation	SNP	G	C	C	rs142252651		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINC1	462	broad.mit.edu	37	1	173876436	173876436	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINH1	871	broad.mit.edu	37	11	75277965	75277965	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167183059	167183059	+	Silent	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42532590	42532591	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B4	10262	broad.mit.edu	37	1	149895850	149895850	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS5	6430	broad.mit.edu	37	14	70238119	70238119	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN4	119559	broad.mit.edu	37	10	120919215	120919215	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCB	6443	broad.mit.edu	37	4	52895759	52895759	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHARPIN	81858	broad.mit.edu	37	8	145157929	145157929	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146256253	146256253	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM3	57619	broad.mit.edu	37	4	77692084	77692084	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52003553	52003553	+	Silent	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC15	284266	broad.mit.edu	37	18	43418899	43418900	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52031089	52031089	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52033242	52033242	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100841699	100841699	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72196974	72196974	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPG	55423	broad.mit.edu	37	20	1630065	1630065	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRT7	51547	broad.mit.edu	37	17	79872196	79872196	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164705047	164705047	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164748573	164748573	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164750353	164750353	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164777717	164777717	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A4	201780	broad.mit.edu	37	4	48490381	48490381	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A7	84068	broad.mit.edu	37	4	147215233	147215233	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48577341	48577341	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56920913	56920913	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44665331	44665331	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A2	6565	broad.mit.edu	37	3	121641883	121641883	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A3	10786	broad.mit.edu	37	6	25851096	25851096	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22387293	22387293	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100795395	100795395	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63057949	63057949	+	Silent	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A12	116085	broad.mit.edu	37	11	64360946	64360946	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A37	51312	broad.mit.edu	37	8	23429055	23429055	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A38	54977	broad.mit.edu	37	3	39433348	39433348	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107330784	107330785	+	Intron	DNP	AC	CA	CA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107350696	107350696	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107352929	107352929	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92401487	92401487	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A2	11001	broad.mit.edu	37	15	50521115	50521115	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A4	10999	broad.mit.edu	37	9	131105460	131105460	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A12	154091	broad.mit.edu	37	6	134350242	134350242	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC37A3	84255	broad.mit.edu	37	7	140048468	140048468	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A7	55238	broad.mit.edu	37	16	58712262	58712262	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A14	23516	broad.mit.edu	37	8	22272314	22272314	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	76107319	76107319	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A4	8671	broad.mit.edu	37	4	72338327	72338328	+	Intron	DNP	TC	GT	GT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A4	8671	broad.mit.edu	37	4	72338393	72338393	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101603519	101603519	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101603667	101603667	+	5'UTR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32896652	32896652	+	5'Flank	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A18	348932	broad.mit.edu	37	5	1232286	1232286	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A18	348932	broad.mit.edu	37	5	1240700	1240700	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1208874	1208874	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A20	54716	broad.mit.edu	37	3	45817564	45817564	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40342413	40342413	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173470159	173470159	+	3'UTR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103124755	103124755	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A6	10479	broad.mit.edu	37	X	135076887	135076887	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20885915	20885915	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70744068	70744068	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN11	91607	broad.mit.edu	37	17	33690603	33690603	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20619206	20619206	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168201449	168201449	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84453626	84453626	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164905952	164905952	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK4	139065	broad.mit.edu	37	X	142718605	142718605	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2088462	2088462	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47721882	47721882	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMEK2	57223	broad.mit.edu	37	2	55831071	55831071	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG5	23381	broad.mit.edu	37	1	156244369	156244369	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG5	23381	broad.mit.edu	37	1	156244567	156244567	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70418870	70418870	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70461123	70461123	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMO	6608	broad.mit.edu	37	7	128849255	128849255	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMO	6608	broad.mit.edu	37	7	128850377	128850377	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPDL3B	27293	broad.mit.edu	37	1	28282220	28282220	+	Missense_Mutation	SNP	C	A	A	rs138724868		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPX	23676	broad.mit.edu	37	X	21755551	21755551	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88408080	88408080	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCAIP	9627	broad.mit.edu	37	5	121759041	121759041	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCA	6622	broad.mit.edu	37	4	90647673	90647673	+	3'UTR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-17	100033455	broad.mit.edu	37	15	25448261	25448261	+	5'Flank	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-17	100033455	broad.mit.edu	37	15	25448280	25448280	+	5'Flank	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25330472	25330472	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121823892	121823892	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51449065	51449065	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51571098	51571098	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1263177	1263177	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOHLH1	402381	broad.mit.edu	37	9	138586174	138586174	+	3'UTR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS1	10580	broad.mit.edu	37	10	97096425	97096425	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108412274	108412274	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108431237	108431237	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108458987	108458987	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106982903	106982903	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	107012559	107012559	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX13	9580	broad.mit.edu	37	1	204095176	204095176	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX9	6662	broad.mit.edu	37	17	70118928	70118928	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231065715	231065715	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140L	93349	broad.mit.edu	37	2	231267732	231267732	+	3'UTR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP4	6671	broad.mit.edu	37	7	21516849	21516849	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118530450	118530450	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118535301	118535301	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118583391	118583391	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123594546	123594546	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARCL1	8404	broad.mit.edu	37	4	88411271	88411271	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPC25	57405	broad.mit.edu	37	2	169728007	169728007	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35700934	35700934	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16255328	16255328	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16255445	16255445	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16257830	16257830	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228882720	228882720	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228884459	228884459	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228973499	228973499	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIRE2	84501	broad.mit.edu	37	16	89922515	89922515	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS3	201305	broad.mit.edu	37	17	4390992	4390992	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPN	6693	broad.mit.edu	37	16	29676149	29676149	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCD1	90853	broad.mit.edu	37	1	32259389	32259389	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2E	6704	broad.mit.edu	37	1	153066232	153066232	+	5'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158584192	158584192	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158589210	158589210	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158614185	158614185	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158650425	158650425	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131367432	131367432	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66476574	66476574	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC3	55304	broad.mit.edu	37	20	12989924	12989924	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SR140	23350	broad.mit.edu	37	3	142757789	142757789	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45619952	45619952	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30745918	30745918	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRC	6714	broad.mit.edu	37	20	36014672	36014672	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM3	222183	broad.mit.edu	37	7	75894765	75894765	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH2	85464	broad.mit.edu	37	17	28003892	28003892	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH3	54961	broad.mit.edu	37	11	67075137	67075137	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149489633	149489633	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149494478	149494478	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149523230	149523230	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52661786	52661786	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53045795	53045795	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL6	10402	broad.mit.edu	37	3	98512693	98512693	+	3'UTR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107446571	107446571	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA4	7903	broad.mit.edu	37	5	100231285	100231285	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17363209	17363209	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52555803	52555803	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3L4	64940	broad.mit.edu	37	7	66770984	66770984	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM	8027	broad.mit.edu	37	10	17702489	17702489	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD13	90627	broad.mit.edu	37	13	33704305	33704305	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67939192	67939192	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74473108	74473108	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRBP	55342	broad.mit.edu	37	9	125898293	125898293	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3A	3703	broad.mit.edu	37	11	125484098	125484098	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1B1	27284	broad.mit.edu	37	4	70596417	70596417	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT6B1	391365	broad.mit.edu	37	2	37406600	37406600	+	Splice_Site	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29756823	29756823	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46331047	46331047	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNCRIP	10492	broad.mit.edu	37	6	86347031	86347031	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152454387	152454387	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPO2	171024	broad.mit.edu	37	4	119952487	119952487	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33560369	33560369	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT4	6860	broad.mit.edu	37	18	40850492	40850492	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR2	9287	broad.mit.edu	37	6	132938716	132938716	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR6	319100	broad.mit.edu	37	6	132892374	132892374	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC1	6867	broad.mit.edu	37	8	38684771	38684771	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32632340	32632340	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF9B	51616	broad.mit.edu	37	X	77388807	77388807	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGAP	117289	broad.mit.edu	37	6	159457709	159457709	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160005759	160005759	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61498018	61498018	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D10A	83874	broad.mit.edu	37	22	30688619	30688619	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D22B	55633	broad.mit.edu	37	6	37281631	37281631	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3B	414059	broad.mit.edu	37	17	34493270	34493270	+	3'UTR	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3G	654341	broad.mit.edu	37	17	34797366	34797366	+	3'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBRG4	9238	broad.mit.edu	37	7	45141246	45141246	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX2	6909	broad.mit.edu	37	17	59477534	59477534	+	5'UTR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEA2	6919	broad.mit.edu	37	20	62698261	62698261	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3B	51224	broad.mit.edu	37	18	44561107	44561107	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1	10915	broad.mit.edu	37	5	145858034	145858034	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52896444	52896444	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL6	27004	broad.mit.edu	37	14	96136968	96136968	+	Intron	SNP	A	T	T	rs148121701	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDO2	6999	broad.mit.edu	37	4	156830000	156830000	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDO2	6999	broad.mit.edu	37	4	156838702	156838702	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD1	56165	broad.mit.edu	37	10	115982366	115982366	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD2	8463	broad.mit.edu	37	19	49860457	49860457	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30701812	30701812	+	Frame_Shift_Del	DEL	A	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2A	7020	broad.mit.edu	37	6	10404933	10404933	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2L1	29842	broad.mit.edu	37	2	121991727	121991727	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133473544	133473544	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133487023	133487023	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133487079	133487079	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2377251	2377251	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2411686	2411686	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133881926	133881926	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43798777	43798777	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11485953	11485953	+	Splice_Site	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138414452	138414452	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138414563	138414563	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD7	91151	broad.mit.edu	37	16	3350096	3350096	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD7	91151	broad.mit.edu	37	16	3350604	3350604	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166795203	166795203	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166916357	166916357	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166946698	166946698	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63044382	63044382	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63102154	63102154	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120470840	120470840	+	Splice_Site	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLX1	3195	broad.mit.edu	37	10	102896655	102896655	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM2D3	80213	broad.mit.edu	37	15	102190128	102190128	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF4	81501	broad.mit.edu	37	8	105367344	105367344	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF4	9777	broad.mit.edu	37	20	30743012	30743012	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2616632	2616632	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCC3	57458	broad.mit.edu	37	12	94976067	94976067	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED10P1	286102	broad.mit.edu	37	8	146220517	146220517	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM116	89894	broad.mit.edu	37	12	112371823	112371823	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132A	54972	broad.mit.edu	37	11	60695346	60695346	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM177	80775	broad.mit.edu	37	2	120439110	120439110	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130762817	130762817	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130762884	130762884	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM38B	55151	broad.mit.edu	37	9	108522820	108522820	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM57	55219	broad.mit.edu	37	1	25785240	25785240	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11B	132724	broad.mit.edu	37	4	69111239	69111239	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68995518	68995518	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19755919	19755919	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC3	160418	broad.mit.edu	37	12	88568469	88568469	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF18	8995	broad.mit.edu	37	1	173010504	173010504	+	3'UTR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF18	8995	broad.mit.edu	37	1	173010824	173010824	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNF	7124	broad.mit.edu	37	6	31544650	31544650	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI2	7136	broad.mit.edu	37	11	1860815	1860815	+	5'Flank	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74664034	74664035	+	Missense_Mutation	DNP	CG	GA	GA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT3	7140	broad.mit.edu	37	11	1957395	1957395	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175046618	175046618	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175046880	175046880	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175048462	175048462	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175048554	175048554	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNP1	7141	broad.mit.edu	37	2	217724358	217724358	+	3'UTR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNPO2	30000	broad.mit.edu	37	19	12825812	12825812	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNPO2	30000	broad.mit.edu	37	19	12825904	12825904	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175328854	175328854	+	Silent	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175331736	175331736	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47408169	47408169	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32021402	32021402	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32035474	32035474	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578370	7578370	+	Splice_Site	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72355294	72355294	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPI1	7167	broad.mit.edu	37	12	6978433	6978433	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPP2	7174	broad.mit.edu	37	13	103295796	103295796	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20066854	20066854	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10942857	10942857	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209933485	209933485	+	Missense_Mutation	SNP	G	C	C	rs138600826		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAM2	9697	broad.mit.edu	37	6	52400608	52400608	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123786080	123786080	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREH	11181	broad.mit.edu	37	11	118529778	118529778	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML2	79865	broad.mit.edu	37	6	41168740	41168740	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM21	6737	broad.mit.edu	37	11	4406815	4406815	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM25	7706	broad.mit.edu	37	17	54978736	54978736	+	Intron	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM3	10612	broad.mit.edu	37	11	6487011	6487011	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM40	135644	broad.mit.edu	37	6	30115165	30115165	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140401979	140401979	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248023910	248023910	+	Intron	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248031161	248031162	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189026098	189026098	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14487460	14487460	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230654584	230654584	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT6	51605	broad.mit.edu	37	20	5923323	5923323	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72946447	72946447	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72951078	72951078	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72964795	72964795	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC7	57113	broad.mit.edu	37	5	135692735	135692735	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116427058	116427058	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116599370	116599370	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3422138	3422138	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142612498	142612498	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142575641	142575641	+	Intron	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98574467	98574467	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98592252	98592252	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRY6	154754	broad.mit.edu	37	7	142480092	142480092	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRYX3	136541	broad.mit.edu	37	7	141955393	141955393	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10IP	254187	broad.mit.edu	37	11	65721244	65721244	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA13	114960	broad.mit.edu	37	7	130353959	130353959	+	Silent	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51873136	51873136	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31770504	31770504	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN14	81619	broad.mit.edu	37	10	82267187	82267187	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN18	90139	broad.mit.edu	37	11	44941315	44941315	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN2	10100	broad.mit.edu	37	1	115603136	115603136	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPO2	222642	broad.mit.edu	37	6	41011324	41011324	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK1B	83942	broad.mit.edu	37	5	112769535	112769535	+	Silent	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21A	199223	broad.mit.edu	37	3	39149412	39149412	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166755187	166755187	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC27	55622	broad.mit.edu	37	2	32858900	32858900	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC29	83894	broad.mit.edu	37	4	147824673	147824673	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC39B	158219	broad.mit.edu	37	9	15177782	15177782	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89310242	89310242	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF1	7270	broad.mit.edu	37	9	135277293	135277293	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80750341	80750341	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL3	26140	broad.mit.edu	37	3	9839507	9839507	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL5	23093	broad.mit.edu	37	14	76259372	76259372	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179399495	179399495	+	Silent	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179407215	179407215	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179432396	179432396	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179439537	179439537	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179447086	179447086	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179447730	179447730	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179450060	179450060	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179454814	179454814	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179455175	179455175	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179459375	179459375	+	Splice_Site	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179472295	179472295	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179495493	179495493	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179517754	179517754	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179526459	179526459	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179552888	179552888	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179576812	179576812	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179577502	179577502	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179586740	179586740	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179587120	179587120	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179588665	179588665	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179639722	179639722	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179649066	179649066	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179659381	179659381	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3D	113457	broad.mit.edu	37	2	132238277	132238277	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22842198	22842198	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXLNG	55787	broad.mit.edu	37	X	16850763	16850763	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRO3	7301	broad.mit.edu	37	15	41857324	41857324	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	89028421	89028421	+	Missense_Mutation	SNP	G	T	T	rs146020203		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA5	79876	broad.mit.edu	37	3	132390744	132390744	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA7	7318	broad.mit.edu	37	3	49850017	49850017	+	Intron	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3A	53347	broad.mit.edu	37	21	43833516	43833516	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2W	55284	broad.mit.edu	37	8	74742658	74742658	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBL7	84993	broad.mit.edu	37	15	74743668	74743668	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN1	29979	broad.mit.edu	37	9	86292810	86292810	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN4	56893	broad.mit.edu	37	1	156012438	156012438	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR1	197131	broad.mit.edu	37	15	43252861	43252861	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN1	51035	broad.mit.edu	37	11	62445448	62445448	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UEVLD	55293	broad.mit.edu	37	11	18610241	18610241	+	5'UTR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT2	55757	broad.mit.edu	37	13	96489554	96489554	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A5	54579	broad.mit.edu	37	2	234663729	234663729	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B28	54490	broad.mit.edu	37	4	70152664	70152664	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17738480	17738480	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176301472	176301472	+	Missense_Mutation	SNP	C	A	A	rs150952594		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210654387	210654387	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215808090	215808090	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216051137	216051137	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216390789	216390789	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216420371	216420371	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216420442	216420442	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USO1	8615	broad.mit.edu	37	4	76731607	76731607	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179448420	179448421	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113683217	113683217	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP48	84196	broad.mit.edu	37	1	22078142	22078142	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6	9098	broad.mit.edu	37	17	5048835	5048835	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8995999	8995999	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP6	55813	broad.mit.edu	37	17	30216303	30216303	+	Splice_Site	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UVRAG	7405	broad.mit.edu	37	11	75852056	75852056	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107446142	107446142	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19026645	19026645	+	IGR	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	28629831	28629831	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31006233	31006233	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36812656	36812656	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42746474	42746474	+	IGR	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46213018	46213018	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	54149188	54149188	+	IGR	SNP	C	G	G	rs74133324	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	61311362	61311362	+	IGR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	107047165	107047165	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119473938	119473938	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119692972	119692972	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122485303	122485303	+	IGR	SNP	G	T	T	rs76594464	byFrequency;by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124086136	124086136	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124120729	124120729	+	IGR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124120789	124120789	+	IGR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23427302	23427302	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	40105319	40105319	+	IGR	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48929938	48929938	+	IGR	SNP	C	T	T	rs141988540	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48929940	48929940	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49893689	49893689	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50227863	50227863	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55212571	55212571	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56143269	56143269	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57983210	57983210	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58060125	58060125	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71869985	71869985	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91683144	91683144	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	121354754	121354754	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	15956278	15956278	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	24795997	24795997	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34318015	34318015	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	4207647	4207647	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61625680	61625680	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19728280	19728280	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	42005473	42005473	+	IGR	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53774523	53774523	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68406640	68406640	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90644918	90644918	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91924266	91924266	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19118130	19118130	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19411784	19411784	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19502140	19502140	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806587	19806587	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19855042	19855042	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19855180	19855180	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20265279	20265279	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20404828	20404828	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45330563	45330563	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	58097273	58097273	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	65746558	65746558	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82384170	82384170	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99439321	99439321	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22448602	22448602	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31192602	31192602	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60257135	60257135	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60346010	60346010	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76039426	76039426	+	IGR	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84722258	84722258	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	98811254	98811254	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20606971	20606971	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32169101	32169102	+	IGR	DNP	CC	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32443214	32443214	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32859233	32859233	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33373472	33373472	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33402049	33402049	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33741084	33741084	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34660286	34660286	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52690010	52690010	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76268995	76268995	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	82468573	82468573	+	IGR	SNP	C	T	T	rs140917095	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	16746221	16746221	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	19091446	19091446	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20492807	20492807	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21390559	21390559	+	IGR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	34433648	34433648	+	IGR	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60215486	60215486	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60314148	60314148	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	76475672	76475672	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11629927	11629927	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22697220	22697220	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22869011	22869011	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23015126	23015126	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23688149	23688149	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55208521	55208521	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	56407268	56407268	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	58956758	58956758	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	8842390	8842390	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13125042	13125042	+	IGR	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149094603	149094603	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149108982	149108982	+	IGR	SNP	C	T	T	rs148475899	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149262162	149262162	+	IGR	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149262310	149262310	+	IGR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	196734804	196734804	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247400458	247400458	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248486829	248486829	+	IGR	SNP	A	T	T	rs78270428	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249066046	249066046	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	40183937	40183937	+	IGR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96884419	96884419	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10366480	10366480	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6195853	6195853	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	7812533	7812533	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14722888	14722888	+	IGR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14899032	14899032	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14899151	14899151	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20617474	20617474	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	37388574	37388574	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	37388722	37388722	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16364835	16364835	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16405883	16405883	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16940799	16940799	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17395215	17395215	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105295051	105295051	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107092155	107092155	+	IGR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131019752	131019752	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131026454	131026454	+	IGR	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131414177	131414177	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	156126367	156126367	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162357701	162357701	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162360367	162360367	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162362448	162362448	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	184472436	184472436	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	184472538	184472538	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	188690512	188690512	+	IGR	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210044962	210044962	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4562305	4562305	+	IGR	SNP	G	T	T	rs143659769	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6636204	6636204	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	71030374	71030374	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	71282642	71282642	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96212537	96212538	+	IGR	DNP	GG	TT	TT			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	97712383	97712383	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	104221928	104221928	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116365093	116365093	+	IGR	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	147308766	147308766	+	IGR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166783650	166783650	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31495523	31495523	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74185840	74185840	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75433238	75433238	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87100321	87100321	+	IGR	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87101774	87101774	+	IGR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87372948	87372948	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88366360	88366360	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	106024782	106024782	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109710556	109710556	+	IGR	SNP	G	T	T	rs141681905	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113606611	113606611	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113659798	113659798	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113659821	113659821	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135966765	135966765	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137277366	137277366	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	171735494	171735494	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17528823	17528823	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	176416986	176416986	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27162484	27162484	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49507854	49507854	+	IGR	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64216310	64216310	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69901164	69901164	+	IGR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69998114	69998114	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105752315	105752315	+	IGR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	108924681	108924681	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110319476	110319476	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	114726407	114726407	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154777874	154777874	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	162843597	162843597	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56817644	56817644	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	65868321	65868321	+	IGR	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	72021729	72021729	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84760458	84760458	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97549378	97549378	+	IGR	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	10366738	10366738	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	122001315	122001315	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	19613778	19613778	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	25731954	25731954	+	IGR	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27704765	27704765	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29069515	29069515	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54490080	54490080	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	56297802	56297802	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66547197	66547197	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66804156	66804156	+	IGR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93598324	93598324	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10492518	10492518	+	IGR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112375256	112375256	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124985058	124985058	+	IGR	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136398926	136398926	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	138089308	138089308	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	138374067	138374067	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144707428	144707428	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145280561	145280561	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	149018906	149018906	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152446841	152446841	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	15741200	15741200	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25251982	25251982	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25729560	25729560	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25729585	25729585	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37625936	37625936	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54487833	54487833	+	IGR	SNP	C	A	A	rs113878270	by1000genomes	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55002930	55002930	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56297550	56297550	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56356392	56356392	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56358640	56358640	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56372571	56372571	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56636189	56636189	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56636563	56636563	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63353916	63353916	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63354360	63354360	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63642885	63642885	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	72836507	72836507	+	IGR	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88269036	88269036	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9766464	9766464	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9766639	9766639	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134656726	134656726	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	37791759	37791760	+	IGR	INS	-	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47885356	47885356	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	54449951	54449951	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5707220	5707220	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	67897455	67897455	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7218515	7218515	+	IGR	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73122005	73122005	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74128341	74128341	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	81178386	81178386	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	125448548	125448548	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	15527679	15527679	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30773879	30773879	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44170393	44170393	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	65617437	65617437	+	IGR	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68315647	68315647	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84703347	84703347	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	105314832	105314832	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106845680	106845680	+	IGR	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122251608	122251608	+	IGR	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144711875	144711875	+	IGR	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145074392	145074392	+	IGR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147279787	147279787	+	IGR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	24334954	24334954	+	IGR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68004774	68004774	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79828463	79828463	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	81753187	81753187	+	IGR	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	83004047	83004047	+	IGR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89368005	89368005	+	IGR	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VARS	7407	broad.mit.edu	37	6	31760738	31760738	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108315512	108315512	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82836667	82836667	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177608644	177608644	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VHLL	391104	broad.mit.edu	37	1	156269023	156269023	+	5'UTR	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPR2	7434	broad.mit.edu	37	7	158829533	158829533	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62223233	62223233	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184586832	184586832	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK1	7443	broad.mit.edu	37	14	97319406	97319406	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61050436	61050436	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WARS2	10352	broad.mit.edu	37	1	119628304	119628304	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP11P1	441818	broad.mit.edu	37	18	30092986	30092986	+	RNA	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR16	146845	broad.mit.edu	37	17	9536222	9536222	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR27	253769	broad.mit.edu	37	6	170059369	170059369	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR33	55339	broad.mit.edu	37	2	128482706	128482706	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167245694	167245694	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167254714	167254714	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37379354	37379354	+	5'Flank	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT3A	89780	broad.mit.edu	37	1	228210323	228210323	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108620678	108620678	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108634280	108634280	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP1	11059	broad.mit.edu	37	8	87424098	87424098	+	Silent	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP2	11060	broad.mit.edu	37	16	69922200	69922200	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31558965	31558965	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168099200	168099200	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168099600	168099600	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168102985	168102985	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168106954	168106954	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73063375	73063375	+	RNA	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73066401	73066401	+	RNA	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73066403	73066403	+	RNA	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128887107	128887107	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180832785	180832785	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC5	7520	broad.mit.edu	37	2	216983579	216983579	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF6	286451	broad.mit.edu	37	X	67731848	67731848	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135743311	135743311	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDF2	51441	broad.mit.edu	37	1	29069369	29069369	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAK	51776	broad.mit.edu	37	2	174131422	174131422	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100334246	100334246	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100350635	100350635	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB11	27107	broad.mit.edu	37	3	101383713	101383713	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H6	376940	broad.mit.edu	37	2	113088956	113088956	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC12	170261	broad.mit.edu	37	X	117959226	117959226	+	Missense_Mutation	SNP	C	A	A	rs35356061	byFrequency	TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111624847	111624847	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC5	203430	broad.mit.edu	37	X	77912978	77912978	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCWPW2	152098	broad.mit.edu	37	3	28454784	28454784	+	Silent	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207146608	207146608	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72830811	72830811	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77616468	77616468	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767959	77767959	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106813429	106813429	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52703666	52703666	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZHX1	11244	broad.mit.edu	37	8	124265929	124265929	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44802952	44802952	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF107	51427	broad.mit.edu	37	7	64168595	64168595	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF136	7695	broad.mit.edu	37	19	12273958	12273958	+	5'UTR	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF202	7753	broad.mit.edu	37	11	123596630	123596630	+	3'UTR	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22154078	22154078	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF234	10780	broad.mit.edu	37	19	44660544	44660544	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22271616	22271616	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22271620	22271620	+	Silent	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF287	57336	broad.mit.edu	37	17	16456492	16456492	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF311	282890	broad.mit.edu	37	6	28971290	28971290	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF321	399669	broad.mit.edu	37	19	53432347	53432347	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF343	79175	broad.mit.edu	37	20	2464766	2464766	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF382	84911	broad.mit.edu	37	19	37117543	37117543	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21462738	21462738	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21478689	21478689	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF396	252884	broad.mit.edu	37	18	32953382	32953382	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49671243	49671243	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF436	80818	broad.mit.edu	37	1	23689076	23689076	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF440	126070	broad.mit.edu	37	19	11943358	11943358	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF440	126070	broad.mit.edu	37	19	11943498	11943498	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF461	92283	broad.mit.edu	37	19	37155483	37155483	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57188263	57188263	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF496	84838	broad.mit.edu	37	1	247486582	247486582	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22804792	22804792	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF578	147660	broad.mit.edu	37	19	52994605	52994605	+	Translation_Start_Site	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71625961	71625961	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF670	93474	broad.mit.edu	37	1	247202108	247202108	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF675	171392	broad.mit.edu	37	19	23836222	23836222	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF679	168417	broad.mit.edu	37	7	63709545	63709545	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF687	57592	broad.mit.edu	37	1	151259784	151259784	+	Silent	SNP	C	T	T	rs141982116		TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF702P	79986	broad.mit.edu	37	19	53498542	53498542	+	5'Flank	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF737	100129842	broad.mit.edu	37	19	20727634	20727634	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF746	155061	broad.mit.edu	37	7	149174026	149174026	+	Silent	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF750	79755	broad.mit.edu	37	17	80789947	80789947	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF763	284390	broad.mit.edu	37	19	12088822	12088822	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF768	79724	broad.mit.edu	37	16	30537224	30537224	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF777	27153	broad.mit.edu	37	7	149129541	149129541	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780B	163131	broad.mit.edu	37	19	40541949	40541949	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88956801	88956801	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88962752	88962752	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88965181	88965181	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57767460	57767460	+	Silent	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF839	55778	broad.mit.edu	37	14	102808406	102808406	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF862	643641	broad.mit.edu	37	7	149557773	149557773	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNHIT3	9326	broad.mit.edu	37	17	34842563	34842563	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNRF3	84133	broad.mit.edu	37	22	29445223	29445223	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21216719	21216719	+	Intron	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP3	7784	broad.mit.edu	37	7	76054473	76054473	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM4	65249	broad.mit.edu	37	19	13939467	13939467	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZUFSP	221302	broad.mit.edu	37	6	116972825	116972825	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30980021	30980021	+	5'Flank	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31005818	31005818	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	45551436	45551436	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	113661354	113661354	+	RNA	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89768514	89768514	+	Silent	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31288491	31288491	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22337225	22337226	+	Intron	DNP	CC	AA	AA			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22573927	22573927	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22739973	22739973	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22987638	22987638	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28734117	28734117	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	66479756	66479756	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102315557	102315557	+	5'Flank	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23098430	23098430	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23108912	23108912	+	Intron	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25429691	25429691	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25430774	25430774	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76075027	76075027	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29332198	29332198	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33013884	33013884	+	RNA	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33783432	33783432	+	5'Flank	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34739687	34739687	+	RNA	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21731048	21731048	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21731348	21731348	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	34233853	34233853	+	RNA	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39566009	39566009	+	RNA	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9806753	9806753	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143212961	143212961	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89544244	89544244	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89976092	89976092	+	Intron	SNP	T	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90008264	90008264	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90139104	90139104	+	RNA	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90160618	90160618	+	Intron	SNP	T	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90160696	90160696	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90193079	90193079	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90248918	90248918	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90259769	90259769	+	Intron	SNP	A	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	905352	905352	+	RNA	SNP	T	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96593177	96593177	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180490908	180490908	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69332383	69332383	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69343154	69343154	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23972294	23972294	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9908623	9908623	+	Intron	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100606630	100606630	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142013488	142013488	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142120205	142120205	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142143531	142143531	+	Intron	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142149344	142149344	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142180926	142180926	+	Intron	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142197981	142197981	+	Intron	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142247290	142247290	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142499736	142499736	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38375104	38375104	+	RNA	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	99580970	99580970	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	99590175	99590175	+	3'UTR	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86567330	86567330	+	Silent	SNP	G	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43915832	43915832	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69634786	69634786	+	RNA	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	88464296	88464296	+	Silent	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90747757	90747757	+	Intron	SNP	G	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48159271	48159271	+	Intron	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	80185687	80185687	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
