Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA8	10351	broad.mit.edu	37	17	66902272	66902272	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB10	23456	broad.mit.edu	37	1	229661917	229661917	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87104728	87104728	+	Silent	SNP	C	T	T	rs141141860		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20685483	20685483	+	5'Flank	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC6	368	broad.mit.edu	37	16	16272552	16272552	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22048235	22048235	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22068801	22068801	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22086858	22086858	+	Splice_Site	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG2	9429	broad.mit.edu	37	4	89034796	89034796	+	Intron	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD11	84129	broad.mit.edu	37	3	132363796	132363796	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80643486	80643486	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX3	8310	broad.mit.edu	37	4	8407536	8407536	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL1	2180	broad.mit.edu	37	4	185678694	185678694	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20559639	20559639	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106610270	106610270	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33881443	33881443	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS15	170689	broad.mit.edu	37	11	130343039	130343039	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43777469	43777469	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43833654	43833654	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43945065	43945065	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL2	9719	broad.mit.edu	37	9	136402557	136402557	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167823640	167823640	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7717298	7717298	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100182112	100182112	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFG3L2	10939	broad.mit.edu	37	18	12359959	12359959	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150814309	150814309	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT3	56894	broad.mit.edu	37	21	45400793	45400793	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2	64902	broad.mit.edu	37	5	35037072	35037072	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCY	191	broad.mit.edu	37	20	32877968	32877968	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C3	8644	broad.mit.edu	37	10	5141579	5141579	+	Missense_Mutation	SNP	C	T	T	rs35575889	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243828134	243828134	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29940384	29940384	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX15	246	broad.mit.edu	37	17	4535475	4535475	+	Splice_Site	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR8	79800	broad.mit.edu	37	2	203831607	203831607	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY2B	280	broad.mit.edu	37	1	104121933	104121933	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114195639	114195639	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139884598	139884598	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKH	56172	broad.mit.edu	37	5	14769115	14769115	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD12	23253	broad.mit.edu	37	18	9255003	9255003	+	Missense_Mutation	SNP	C	G	G	rs148294667	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20A4	728747	broad.mit.edu	37	9	69382301	69382301	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37486074	37486074	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14797691	14797691	+	Intron	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD35	148741	broad.mit.edu	37	1	145561550	145561550	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD7	56311	broad.mit.edu	37	7	117876904	117876904	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99223145	99223145	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKZF1	55139	broad.mit.edu	37	2	220098947	220098947	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2A1	160	broad.mit.edu	37	19	50306261	50306261	+	Frame_Shift_Del	DEL	A	-	-			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB3	10307	broad.mit.edu	37	5	139943182	139943182	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP4	361	broad.mit.edu	37	18	24441225	24441225	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115335993	115335993	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36134867	36134867	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36271639	36271639	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135825773	135825773	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46285565	46285565	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSA	410	broad.mit.edu	37	22	51065403	51065403	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSJ	79642	broad.mit.edu	37	4	114824400	114824400	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARVCF	421	broad.mit.edu	37	22	19965107	19965107	+	Silent	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP2	8853	broad.mit.edu	37	2	9515100	9515100	+	Intron	DEL	A	-	-			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP2	8853	broad.mit.edu	37	2	9525441	9525441	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177143487	177143487	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101090426	101090426	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155452127	155452127	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177001758	177001758	+	Silent	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119382627	119382627	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96796068	96796068	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATN1	1822	broad.mit.edu	37	12	7045534	7045535	+	Frame_Shift_Ins	INS	-	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138914275	138914275	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6AP1	537	broad.mit.edu	37	X	153663818	153663818	+	Silent	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11049623	11049623	+	Splice_Site	SNP	T	A	A	rs28537865		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70048967	70048967	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST4	266675	broad.mit.edu	37	1	45250564	45250564	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP1	649	broad.mit.edu	37	8	22069310	22069310	+	3'UTR	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPTF	2186	broad.mit.edu	37	17	65924679	65924679	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD2	55643	broad.mit.edu	37	19	1986642	1986642	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A3	54718	broad.mit.edu	37	6	26423299	26423299	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A3	10384	broad.mit.edu	37	6	26450236	26450236	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUB1	699	broad.mit.edu	37	2	111425442	111425442	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf11	83938	broad.mit.edu	37	10	77542697	77542697	+	Translation_Start_Site	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf71	118461	broad.mit.edu	37	10	50531291	50531291	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76257150	76257150	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf45	121053	broad.mit.edu	37	12	105385645	105385645	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf48	84419	broad.mit.edu	37	15	45723071	45723071	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30803079	30803079	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179354544	179354544	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57185666	57185666	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf201	90529	broad.mit.edu	37	1	24706266	24706266	+	Silent	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf55	163859	broad.mit.edu	37	1	226187055	226187055	+	5'UTR	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf71	128861	broad.mit.edu	37	20	31814864	31814864	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26678075	26678075	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf62	375307	broad.mit.edu	37	2	219219144	219219144	+	5'Flank	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3	718	broad.mit.edu	37	19	6713376	6713376	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf37	285555	broad.mit.edu	37	4	98633811	98633811	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5AR1	728	broad.mit.edu	37	19	47822946	47822946	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf106	64771	broad.mit.edu	37	6	34654528	34654528	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf153	88745	broad.mit.edu	37	6	42994880	42994880	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf165	154313	broad.mit.edu	37	6	88154185	88154185	+	Intron	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121427049	121427049	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf26	401251	broad.mit.edu	37	6	31731363	31731376	+	Intron	DEL	GGGAGGACCAGGGA	-	-			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf89	221477	broad.mit.edu	37	6	36867370	36867371	+	Frame_Shift_Ins	INS	-	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40958273	40958273	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf64	84060	broad.mit.edu	37	7	92158152	92158152	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf96	169436	broad.mit.edu	37	9	136251403	136251403	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24445547	24445547	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140962971	140962971	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2621976	2621976	+	Splice_Site	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27461359	27461359	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2A	815	broad.mit.edu	37	5	149636276	149636276	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44144290	44144290	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92887606	92887606	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC50	152137	broad.mit.edu	37	3	191100670	191100670	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC52	152185	broad.mit.edu	37	3	113225387	113225387	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC7	221016	broad.mit.edu	37	10	32751962	32751962	+	Silent	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC7	221016	broad.mit.edu	37	10	32854468	32854468	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD80	941	broad.mit.edu	37	3	119248738	119248738	+	Silent	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC16	8881	broad.mit.edu	37	13	115037862	115037862	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH15	1013	broad.mit.edu	37	16	89245841	89245841	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19591263	19591263	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH26	60437	broad.mit.edu	37	20	58564276	58564276	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH5	1003	broad.mit.edu	37	16	66434680	66434680	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31302202	31302202	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK10	8558	broad.mit.edu	37	16	89760648	89760648	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM8	1088	broad.mit.edu	37	19	43093016	43093016	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR1	9620	broad.mit.edu	37	22	46795764	46795764	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13124693	13124693	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CERKL	375298	broad.mit.edu	37	2	182403759	182403759	+	Intron	SNP	G	A	A	rs139671261	by1000genomes	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD3	54927	broad.mit.edu	37	7	132470356	132470356	+	3'UTR	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD1L	9557	broad.mit.edu	37	1	146756888	146756888	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHML	1122	broad.mit.edu	37	1	241797473	241797473	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHP2	63928	broad.mit.edu	37	16	23767251	23767251	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA6	8973	broad.mit.edu	37	8	42611772	42611772	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB3	1142	broad.mit.edu	37	8	42563855	42563855	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB4	130106	broad.mit.edu	37	2	26864168	26864168	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143044081	143044081	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC17A	388512	broad.mit.edu	37	19	14693909	14693909	+	5'UTR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP4	79745	broad.mit.edu	37	2	29366647	29366647	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAS	55907	broad.mit.edu	37	12	22215287	22215287	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150906871	150906871	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87673970	87673970	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT10	25904	broad.mit.edu	37	3	32805965	32805965	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41327314	41327314	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74383778	74383778	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTROB	116840	broad.mit.edu	37	17	7843311	7843311	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101749598	101749598	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86241249	86241249	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMP	1311	broad.mit.edu	37	19	18893990	18893990	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPZ2	51226	broad.mit.edu	37	17	46114330	46114330	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB1	64506	broad.mit.edu	37	15	83240093	83240093	+	Splice_Site	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE6	9362	broad.mit.edu	37	14	24543221	24543221	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1A	1374	broad.mit.edu	37	11	68548137	68548137	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPZ	8532	broad.mit.edu	37	4	8607764	8607764	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR2	1380	broad.mit.edu	37	1	207644471	207644471	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3820748	3820748	+	Silent	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYM	1428	broad.mit.edu	37	16	21279135	21279135	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37334309	37334309	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF3R	1441	broad.mit.edu	37	1	36939048	36939048	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3000195	3000195	+	Silent	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34238130	34238130	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113812417	113812417	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST11	140880	broad.mit.edu	37	20	23431200	23431200	+	Silent	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTR9	9646	broad.mit.edu	37	11	10790096	10790096	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16871067	16871067	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43172631	43172631	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf66	347487	broad.mit.edu	37	X	139040411	139040411	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156721744	156721744	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11A1	1583	broad.mit.edu	37	15	74631499	74631499	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A13	1553	broad.mit.edu	37	19	41595022	41595022	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	15990078	15990078	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4V2	285440	broad.mit.edu	37	4	187120254	187120254	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	86068109	86068109	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK1	1612	broad.mit.edu	37	9	90255223	90255223	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	121930551	121930551	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBN1	1627	broad.mit.edu	37	5	176884408	176884408	+	3'UTR	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF7	10238	broad.mit.edu	37	17	61655948	61655948	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR1	780	broad.mit.edu	37	6	30863109	30863109	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX1	1653	broad.mit.edu	37	2	15742605	15742605	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140273860	140273860	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2C	163259	broad.mit.edu	37	1	115079948	115079948	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	185970902	185970902	+	Missense_Mutation	SNP	C	T	T	rs148285460		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	185975687	185975687	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKH	160851	broad.mit.edu	37	13	42780201	42780201	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182811842	182811842	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	468734	468734	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKFZp686A1627	266695	broad.mit.edu	37	13	19625322	19625322	+	RNA	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLC1	10395	broad.mit.edu	37	8	13357118	13357118	+	Missense_Mutation	SNP	G	T	T	rs150963046		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21913129	21913129	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21062956	21062956	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13885094	13885094	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196726419	196726419	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196849397	196849397	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225684102	225684102	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111379142	111379142	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	62940874	62940874	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	62953176	62953176	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37584329	37584329	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA4	55211	broad.mit.edu	37	3	109052752	109052752	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC1	1823	broad.mit.edu	37	18	28714744	28714744	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117308126	117308126	+	Splice_Site	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2	1894	broad.mit.edu	37	3	172525487	172525487	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEA1	8411	broad.mit.edu	37	12	93244827	93244827	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A2	1917	broad.mit.edu	37	20	62121989	62121989	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36354251	36354251	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4E2	9470	broad.mit.edu	37	2	233431656	233431656	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN1	11117	broad.mit.edu	37	2	27305857	27305857	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN2	84034	broad.mit.edu	37	18	2891556	2891556	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN2	84034	broad.mit.edu	37	18	2892120	2892120	+	Silent	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR4P	326342	broad.mit.edu	37	19	6981129	6981129	+	5'UTR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71510242	71510242	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB49	2039	broad.mit.edu	37	8	21926532	21926532	+	Silent	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA4	2043	broad.mit.edu	37	2	222298897	222298897	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETFDH	2110	broad.mit.edu	37	4	159601866	159601866	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS2	2114	broad.mit.edu	37	21	40188894	40188895	+	Intron	DNP	AC	GT	GT			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EWSR1	2130	broad.mit.edu	37	22	29664520	29664520	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6	54536	broad.mit.edu	37	10	94695455	94695455	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT2	2132	broad.mit.edu	37	11	44193353	44193353	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139209928	139209928	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171B	165215	broad.mit.edu	37	2	187626606	187626606	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3C	10447	broad.mit.edu	37	7	121023022	121023022	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40B	57464	broad.mit.edu	37	7	129107331	129107331	+	Intron	DEL	G	-	-			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55C	91775	broad.mit.edu	37	3	101519958	101519958	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75C1	441452	broad.mit.edu	37	9	90535180	90535180	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARSB	10056	broad.mit.edu	37	2	223513485	223513485	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2C	9103	broad.mit.edu	37	1	161560921	161560921	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2C	9103	broad.mit.edu	37	1	161561521	161561521	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN1	2219	broad.mit.edu	37	9	137804499	137804499	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34205327	34205327	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIGN	55137	broad.mit.edu	37	2	164468117	164468117	+	Nonsense_Mutation	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP15	23307	broad.mit.edu	37	9	115933898	115933898	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLAD1	80308	broad.mit.edu	37	1	154956263	154956263	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142504897	142504897	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153588197	153588197	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153590146	153590146	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172098807	172098807	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXI1	2299	broad.mit.edu	37	5	169533524	169533524	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79340086	79340086	+	Intron	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD7	90167	broad.mit.edu	37	X	131231335	131231335	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32731405	32731405	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32759380	32759380	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89909084	89909084	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26569922	26569922	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT11	63917	broad.mit.edu	37	7	151805010	151805010	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP7	388646	broad.mit.edu	37	1	89630438	89630438	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154310952	154310952	+	Intron	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117849413	117849413	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGCX	2677	broad.mit.edu	37	2	85781216	85781216	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLCE	26035	broad.mit.edu	37	15	69561478	69561478	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6605137	6605137	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMIP	51291	broad.mit.edu	37	19	19752605	19752606	+	Intron	DNP	CC	AA	AA			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG11	2791	broad.mit.edu	37	7	93555449	93555449	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR2	9570	broad.mit.edu	37	17	45009463	45009464	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP5	2814	broad.mit.edu	37	3	194117342	194117342	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAA1	8733	broad.mit.edu	37	8	145139236	145139236	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH4	54865	broad.mit.edu	37	1	156568897	156568897	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD2	2820	broad.mit.edu	37	2	157407174	157407174	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117127977	117127977	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117128020	117128020	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD4	23151	broad.mit.edu	37	22	47059697	47059697	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11772056	11772056	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105774480	105774480	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK5	2901	broad.mit.edu	37	19	42557843	42557843	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13906605	13906605	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM3	2913	broad.mit.edu	37	7	86493754	86493754	+	3'UTR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMC	56169	broad.mit.edu	37	8	130762329	130762329	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTCD	79807	broad.mit.edu	37	4	106744216	106744216	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2H1	2965	broad.mit.edu	37	11	18380312	18380312	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP3	84705	broad.mit.edu	37	19	17452041	17452041	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP4	23560	broad.mit.edu	37	10	1043054	1043054	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21459561	21459561	+	5'Flank	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153220590	153220590	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45396782	45396782	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45645511	45645511	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	19035610	19035610	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELB	92797	broad.mit.edu	37	12	66725408	66725408	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28361721	28361721	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222716993	222716993	+	Missense_Mutation	SNP	C	A	A	rs148477475	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIGD2B	123346	broad.mit.edu	37	15	72968456	72968456	+	RNA	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2AC	8338	broad.mit.edu	37	1	149858747	149858749	+	In_Frame_Del	DEL	AAG	-	-			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143093059	143093059	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	42049869	42049869	+	Silent	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76459718	76459718	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HR	55806	broad.mit.edu	37	8	21986719	21986719	+	5'UTR	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1E	3354	broad.mit.edu	37	6	87725133	87725133	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2A	3356	broad.mit.edu	37	13	47469796	47469796	+	Silent	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDUA	3425	broad.mit.edu	37	4	997818	997818	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNB1	3456	broad.mit.edu	37	9	21077565	21077565	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160477509	160477509	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RB	3560	broad.mit.edu	37	22	37533835	37533835	+	Intron	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL3RA	3563	broad.mit.edu	37	X	1475073	1475073	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMP5	162540	broad.mit.edu	37	17	43923137	43923137	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSIG2	51141	broad.mit.edu	37	2	118860814	118860815	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK1	3654	broad.mit.edu	37	X	153279704	153279704	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGQ	126298	broad.mit.edu	37	19	44096657	44096657	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGQ	126298	broad.mit.edu	37	19	44097241	44097241	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISLR2	57611	broad.mit.edu	37	15	74426491	74426491	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15730041	15730041	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31414913	31414913	+	Silent	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7751045	7751045	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33627307	33627307	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33648293	33648293	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147027952	147027952	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNAL1	84056	broad.mit.edu	37	13	30814603	30814603	+	Silent	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNAL1	84056	broad.mit.edu	37	13	30829462	30829462	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND3	3752	broad.mit.edu	37	1	112319865	112319865	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ11	3767	broad.mit.edu	37	11	17408921	17408921	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155711422	155711422	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK15	60598	broad.mit.edu	37	20	43378982	43378982	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0232	9778	broad.mit.edu	37	4	6843574	6843574	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34791643	34791643	+	Missense_Mutation	SNP	G	A	A	rs149799888		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0528	9847	broad.mit.edu	37	12	22623828	22623828	+	Silent	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8824821	8824821	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1310	55683	broad.mit.edu	37	2	97297100	97297100	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1530	57654	broad.mit.edu	37	4	1346745	1346745	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2013	90231	broad.mit.edu	37	1	11985482	11985482	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70281786	70281786	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA3	3839	broad.mit.edu	37	13	50307098	50307098	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KTELC1	56983	broad.mit.edu	37	3	119205483	119205483	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAGE3	8270	broad.mit.edu	37	X	153706571	153706571	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6999564	6999564	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112438875	112438875	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP6	55323	broad.mit.edu	37	15	71128813	71128813	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2A	353139	broad.mit.edu	37	1	152671410	152671410	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN2	3934	broad.mit.edu	37	9	130914413	130914413	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136562355	136562355	+	Silent	SNP	G	A	A	rs148768579		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LETM1	3954	broad.mit.edu	37	4	1823941	1823941	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS13	29124	broad.mit.edu	37	19	40095887	40095887	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75606585	75606585	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPA	3988	broad.mit.edu	37	10	90988179	90988179	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPI	149998	broad.mit.edu	37	21	15579128	15579128	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76379464	76379464	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC146880	146880	broad.mit.edu	37	17	62750577	62750577	+	RNA	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284232	284232	broad.mit.edu	37	13	19415769	19415769	+	RNA	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650368	650368	broad.mit.edu	37	11	3428934	3428934	+	Intron	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22712700	22712700	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62933853	62933853	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN1	57622	broad.mit.edu	37	19	39798860	39798860	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46914542	46914542	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC19	64922	broad.mit.edu	37	9	26998234	26998234	+	Silent	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC1	55227	broad.mit.edu	37	6	53660211	53660211	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC33	375387	broad.mit.edu	37	3	196387756	196387756	+	Silent	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70489097	70489097	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40653203	40653203	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41129916	41129916	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA12	4111	broad.mit.edu	37	X	151900849	151900849	+	5'UTR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA5	4104	broad.mit.edu	37	X	151284010	151284010	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB18	286514	broad.mit.edu	37	X	26157780	26157780	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140969709	140969709	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEL2	54551	broad.mit.edu	37	15	23890089	23890089	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K4	6416	broad.mit.edu	37	17	12032561	12032561	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10397495	10397495	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART3P	442229	broad.mit.edu	37	6	66499085	66499085	+	RNA	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM4	4173	broad.mit.edu	37	8	48880031	48880031	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP2	55784	broad.mit.edu	37	15	94983273	94983273	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168845574	168845574	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116453021	116453021	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42866752	42866752	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS1	4211	broad.mit.edu	37	2	66775017	66775017	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEP1A	4224	broad.mit.edu	37	6	46802472	46802472	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP5	8076	broad.mit.edu	37	12	8800681	8800681	+	3'UTR	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD11	79157	broad.mit.edu	37	17	74774475	74774475	+	3'UTR	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42049867	42049867	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC26647	219557	broad.mit.edu	37	7	88423779	88423779	+	Missense_Mutation	SNP	C	G	G	rs34781240	byFrequency;by1000genomes	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICALL1	85377	broad.mit.edu	37	22	38328974	38328974	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR129-1	406917	broad.mit.edu	37	7	127847991	127847991	+	RNA	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP17	4326	broad.mit.edu	37	12	132334445	132334445	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPE1	65258	broad.mit.edu	37	18	11884315	11884315	+	3'UTR	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS5	64969	broad.mit.edu	37	2	95783793	95783793	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS9	64965	broad.mit.edu	37	2	105716185	105716185	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSLNL	401827	broad.mit.edu	37	16	831143	831143	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121457668	121457668	+	5'UTR	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTDH	92140	broad.mit.edu	37	8	98718983	98718983	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTIF2	4528	broad.mit.edu	37	2	55470454	55470454	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTM1	4534	broad.mit.edu	37	X	149761155	149761155	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR12	54545	broad.mit.edu	37	5	32270928	32270928	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9018262	9018262	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC1	4604	broad.mit.edu	37	12	102053373	102053373	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC3	4607	broad.mit.edu	37	11	47360789	47360789	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81101699	81101699	+	Silent	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15810937	15810937	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10204768	10204768	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108102326	108102326	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108127306	108127306	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10448685	10448685	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10360813	10360813	+	Silent	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK4	340156	broad.mit.edu	37	6	2693022	2693022	+	Silent	SNP	G	A	A	rs147243450		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18040988	18040988	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5C	55930	broad.mit.edu	37	15	52521134	52521134	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17322659	17322659	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP1	9683	broad.mit.edu	37	16	48634330	48634330	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAF1	92345	broad.mit.edu	37	4	164049972	164049972	+	3'UTR	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	102029295	102029295	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL1	65065	broad.mit.edu	37	2	204037332	204037332	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21098860	21098860	+	Intron	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB2	54550	broad.mit.edu	37	16	84035950	84035950	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU2	4759	broad.mit.edu	37	2	233899563	233899563	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBIE	4794	broad.mit.edu	37	6	44228230	44228230	+	Silent	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIN	51199	broad.mit.edu	37	14	51259545	51259545	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63769576	63769576	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7059931	7059931	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56565024	56565024	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT2	23057	broad.mit.edu	37	1	183247699	183247699	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101086849	101086849	+	5'Flank	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101089902	101089902	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMT1	4836	broad.mit.edu	37	17	43174708	43174708	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOBOX	135935	broad.mit.edu	37	7	144098346	144098346	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS3	4846	broad.mit.edu	37	7	150703923	150703923	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX1	27035	broad.mit.edu	37	X	100098831	100098831	+	3'UTR	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32600293	32600293	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105181473	105181473	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	80163886	80163886	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP107	57122	broad.mit.edu	37	12	69135550	69135550	+	Intron	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP93	9688	broad.mit.edu	37	16	56868624	56868624	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123540180	123540180	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123637470	123637470	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50944528	50944528	+	Missense_Mutation	SNP	C	T	T	rs140281439	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A4	283297	broad.mit.edu	37	11	6897837	6897837	+	5'Flank	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6867752	6867752	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123901236	123901236	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H1	81061	broad.mit.edu	37	22	16449060	16449060	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14C36	127066	broad.mit.edu	37	1	248512051	248512051	+	5'Flank	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M7	391196	broad.mit.edu	37	1	248487930	248487930	+	5'Flank	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525654	248525654	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T8	343172	broad.mit.edu	37	1	248084246	248084246	+	5'Flank	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55340087	55340087	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C3	256144	broad.mit.edu	37	11	48346345	48346345	+	5'Flank	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K15	81127	broad.mit.edu	37	14	20444178	20444178	+	Silent	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20404199	20404200	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4X1	390113	broad.mit.edu	37	11	48285642	48285642	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51E2	81285	broad.mit.edu	37	11	4703272	4703272	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5W2	390148	broad.mit.edu	37	11	55681794	55681794	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K6	128371	broad.mit.edu	37	1	158725513	158725513	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K3	219473	broad.mit.edu	37	11	56086504	56086504	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD4	54726	broad.mit.edu	37	4	146080515	146080515	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY10	27334	broad.mit.edu	37	X	78216921	78216922	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169837281	169837281	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLG	64895	broad.mit.edu	37	2	60988923	60988923	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176740038	176740038	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	205829890	205829890	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	205978323	205978323	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161807728	161807728	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVA	55742	broad.mit.edu	37	11	12530276	12530276	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150770096	150770096	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52637791	52637791	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91133114	91133114	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB2	56103	broad.mit.edu	37	5	140741751	140741751	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82584974	82584974	+	Silent	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105194134	105194134	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165956898	165956898	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20833077	20833077	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA2	64714	broad.mit.edu	37	16	335705	335705	+	Splice_Site	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39617691	39617691	+	Silent	SNP	G	T	T	rs145164124	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178916946	178916946	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R4	30849	broad.mit.edu	37	3	130447403	130447403	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2A	5305	broad.mit.edu	37	10	22828995	22828995	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1B	8395	broad.mit.edu	37	9	71438868	71438868	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP	5304	broad.mit.edu	37	7	142836239	142836239	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP	5304	broad.mit.edu	37	7	142836738	142836738	+	3'UTR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PJA1	64219	broad.mit.edu	37	X	68381955	68381955	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9453406	9453406	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131951829	131951829	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131960496	131960496	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126708349	126708349	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PM20D1	148811	broad.mit.edu	37	1	205814509	205814509	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118228671	118228671	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA7	375775	broad.mit.edu	37	9	140354901	140354901	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE2	5427	broad.mit.edu	37	14	50140867	50140867	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133219533	133219533	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PON1	5444	broad.mit.edu	37	7	94940832	94940832	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA3	8541	broad.mit.edu	37	19	49651314	49651314	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5A	5525	broad.mit.edu	37	1	212534193	212534193	+	3'UTR	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM11	56981	broad.mit.edu	37	11	45241290	45241290	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM16	63976	broad.mit.edu	37	1	3321339	3321339	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23526879	23526879	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47296204	47296204	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68972959	68972959	+	Silent	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69026602	69026602	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM1	8842	broad.mit.edu	37	4	15993844	15993844	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSAPL1	768239	broad.mit.edu	37	4	7435376	7435376	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD3	23362	broad.mit.edu	37	8	18430338	18430338	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43268091	43268091	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD4	5710	broad.mit.edu	37	1	151239877	151239877	+	3'UTR	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP1	5725	broad.mit.edu	37	19	804558	804558	+	Silent	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71512458	71512458	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER4	5734	broad.mit.edu	37	5	40681297	40681297	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209358129	209358129	+	Silent	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	62259225	62259225	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40944397	40944397	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7	54517	broad.mit.edu	37	7	105142792	105142792	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD1	79912	broad.mit.edu	37	12	21598400	21598400	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD1	79912	broad.mit.edu	37	12	21602743	21602743	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QPCTL	54814	broad.mit.edu	37	19	46198725	46198725	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF10	644943	broad.mit.edu	37	11	13031141	13031141	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBKS	64080	broad.mit.edu	37	2	28050350	28050350	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBL1	5933	broad.mit.edu	37	20	35627292	35627292	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM47	54502	broad.mit.edu	37	4	40438443	40438443	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCC2	55920	broad.mit.edu	37	1	17736443	17736443	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REEP4	80346	broad.mit.edu	37	8	21998133	21998133	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101020769	101020769	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240975485	240975485	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOXF1	158800	broad.mit.edu	37	X	119249502	119249502	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87113548	87113548	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF130	55819	broad.mit.edu	37	5	179405138	179405138	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78318726	78318726	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNPS1	10921	broad.mit.edu	37	16	2313105	2313105	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGC	64121	broad.mit.edu	37	1	39322858	39322858	+	Intron	SNP	A	T	T	rs74701224		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX2	860	broad.mit.edu	37	6	45480048	45480048	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34030761	34030761	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBDS	51119	broad.mit.edu	37	7	66459324	66459324	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	9917629	9917629	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCG2	7857	broad.mit.edu	37	2	224462659	224462659	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166929794	166929794	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167089786	167089786	+	Intron	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNM1	79005	broad.mit.edu	37	1	151138661	151138661	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50053098	50053098	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102249432	102249432	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELV	348303	broad.mit.edu	37	19	40009424	40009424	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4B	10509	broad.mit.edu	37	15	90771740	90771740	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9066617	9066617	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9226925	9226925	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9226985	9226985	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9337943	9337943	+	Intron	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP2	59343	broad.mit.edu	37	3	185347653	185347653	+	3'UTR	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRP4	6424	broad.mit.edu	37	7	37949323	37949323	+	Intron	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS4	6429	broad.mit.edu	37	1	29475666	29475666	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D3C	10044	broad.mit.edu	37	9	130536661	130536661	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51165658	51165658	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX2	10736	broad.mit.edu	37	2	45233433	45233433	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164764690	164764690	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A2	6567	broad.mit.edu	37	X	73740833	73740833	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110752419	110752419	+	Silent	SNP	C	A	A	rs140728757	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A14	9016	broad.mit.edu	37	X	129484689	129484689	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A1	6576	broad.mit.edu	37	22	19165156	19165156	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107350585	107350585	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F3	148641	broad.mit.edu	37	1	234444964	234444964	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F5	80255	broad.mit.edu	37	2	114500365	114500365	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A6	25800	broad.mit.edu	37	18	33694102	33694102	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC40A1	30061	broad.mit.edu	37	2	190428701	190428701	+	Silent	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A2	57153	broad.mit.edu	37	19	10738343	10738343	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101588818	101588818	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70585461	70585461	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84454937	84454937	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11145727	11145728	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCAD1	56916	broad.mit.edu	37	4	95206110	95206110	+	Splice_Site	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC3	9126	broad.mit.edu	37	10	112343559	112343559	+	Intron	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17897451	17897451	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMURF1	57154	broad.mit.edu	37	7	98639627	98639627	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD109B	338429	broad.mit.edu	37	15	25287155	25287155	+	RNA	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25342917	25342917	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB2	6645	broad.mit.edu	37	16	69303946	69303946	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX16	64089	broad.mit.edu	37	8	82720655	82720655	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS2	57537	broad.mit.edu	37	4	7668759	7668759	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORD	6652	broad.mit.edu	37	15	45345184	45345184	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX30	11063	broad.mit.edu	37	5	157073589	157073589	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231174740	231174740	+	Silent	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP3	6670	broad.mit.edu	37	2	174820362	174820362	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34207424	34207424	+	Intron	SNP	C	G	G	rs112335285		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN3	139067	broad.mit.edu	37	X	142605119	142605119	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158584869	158584869	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158632750	158632750	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66466354	66466354	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPRB	58477	broad.mit.edu	37	3	133525472	133525472	+	Silent	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104106245	104106245	+	Intron	SNP	G	C	C	rs78000735		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG2	10735	broad.mit.edu	37	X	123197114	123197114	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STC1	6781	broad.mit.edu	37	8	23702578	23702578	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1	11037	broad.mit.edu	37	2	48822396	48822396	+	Silent	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147581744	147581744	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70515708	70515708	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46331298	46331298	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD4	55061	broad.mit.edu	37	1	223402411	223402411	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64610661	64610661	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL3	94120	broad.mit.edu	37	6	159178390	159178390	+	Missense_Mutation	SNP	C	A	A	rs139194153	byFrequency	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL5	94122	broad.mit.edu	37	X	37935964	37935964	+	Intron	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF15	8148	broad.mit.edu	37	17	34171066	34171066	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1B	9014	broad.mit.edu	37	2	10074012	10074012	+	Missense_Mutation	SNP	C	G	G	rs111442552	byFrequency;by1000genomes	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF7L	54457	broad.mit.edu	37	X	100548084	100548084	+	5'Flank	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS	6897	broad.mit.edu	37	5	33456226	33456226	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAT	6898	broad.mit.edu	37	16	71610280	71610280	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX4	9496	broad.mit.edu	37	17	59560402	59560402	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152082275	152082275	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD10	126668	broad.mit.edu	37	1	154480955	154480955	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEC	7006	broad.mit.edu	37	4	48170630	48170630	+	Silent	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30694993	30694993	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFR2	7036	broad.mit.edu	37	7	100239148	100239148	+	5'UTR	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43514223	43514223	+	Intron	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122747257	122747258	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THPO	7066	broad.mit.edu	37	3	184090235	184090235	+	3'UTR	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THUMPD3	25917	broad.mit.edu	37	3	9413088	9413088	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMELESS	8914	broad.mit.edu	37	12	56824676	56824676	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR10	81793	broad.mit.edu	37	4	38776689	38776689	+	Silent	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM178	130733	broad.mit.edu	37	2	39944312	39944312	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM207	131920	broad.mit.edu	37	3	190147425	190147425	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM214	54867	broad.mit.edu	37	2	27261663	27261663	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74359946	74359946	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM39B	55116	broad.mit.edu	37	1	32557333	32557333	+	Silent	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63C	57156	broad.mit.edu	37	14	77705862	77705862	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94808003	94808003	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMF1	7110	broad.mit.edu	37	3	69097192	69097192	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577536	7577536	+	Missense_Mutation	SNP	T	C	C	rs67185453		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP63	8626	broad.mit.edu	37	3	189590692	189590692	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144380113	144380113	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186324472	186324472	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRADD	8717	broad.mit.edu	37	16	67189226	67189227	+	Intron	DNP	GG	AC	AC			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK2	66008	broad.mit.edu	37	2	202252388	202252388	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAM1L1	133022	broad.mit.edu	37	4	118006123	118006123	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73012716	73012716	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73056972	73056972	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM41	90933	broad.mit.edu	37	5	180651801	180651801	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM46	80128	broad.mit.edu	37	1	155156452	155156452	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248028155	248028156	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT1	55621	broad.mit.edu	37	19	13220612	13220612	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77436693	77436693	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3431387	3431387	+	Missense_Mutation	SNP	T	C	C	rs114131791	byFrequency;by1000genomes	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D1	8848	broad.mit.edu	37	13	45149716	45149716	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2104434	2104434	+	Silent	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSKS	60385	broad.mit.edu	37	19	50251357	50251357	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN11	441631	broad.mit.edu	37	12	31132538	31132538	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC23L	153657	broad.mit.edu	37	5	34863158	34863158	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC5	91875	broad.mit.edu	37	14	20757805	20757805	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179415750	179415750	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBD1	51174	broad.mit.edu	37	17	57952108	57952108	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3B	84959	broad.mit.edu	37	11	122665630	122665630	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN2B	137886	broad.mit.edu	37	8	59339148	59339148	+	Intron	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69692148	69692148	+	Silent	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHMK1	127933	broad.mit.edu	37	1	162470787	162470787	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210654198	210654198	+	Intron	SNP	A	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNCX	340260	broad.mit.edu	37	7	1273285	1273285	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNG	7374	broad.mit.edu	37	12	109536251	109536251	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USF2	7392	broad.mit.edu	37	19	35761683	35761683	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216017807	216017807	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216246251	216246251	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP22	23326	broad.mit.edu	37	17	20911076	20911076	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14A	10813	broad.mit.edu	37	X	129042031	129042031	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	13199671	13199672	+	IGR	INS	-	G	G	rs113702003		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	50574125	50574125	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18933085	18933085	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51411371	51411371	+	IGR	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6015922	6015922	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108675062	108675062	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8167718	8167718	+	IGR	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	94915225	94915225	+	IGR	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	9747811	9747811	+	IGR	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59104527	59104527	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79484589	79484589	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	102144303	102144303	+	IGR	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806755	19806755	+	IGR	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147472	20147472	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147634	20147634	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20265214	20265214	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57511596	57511596	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33571898	33571898	+	IGR	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14613894	14613894	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26232446	26232446	+	IGR	SNP	C	T	T	rs114543946	by1000genomes	TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57863923	57863923	+	IGR	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	7135739	7135739	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	84166	84166	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54809137	54809137	+	IGR	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	56717681	56717681	+	IGR	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106240723	106240723	+	IGR	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12987497	12987497	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903312	148903312	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149093767	149093767	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	77165903	77165903	+	IGR	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29847534	29847534	+	IGR	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10614451	10614451	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16365571	16365571	+	IGR	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	158067356	158067356	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	189092807	189092807	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194994685	194994685	+	IGR	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	224570018	224570018	+	IGR	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	41383999	41383999	+	IGR	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83822357	83822357	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91791000	91791000	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91933217	91933217	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	122380376	122380376	+	IGR	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	14614566	14614566	+	IGR	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155831576	155831576	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180605578	180605578	+	IGR	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31223339	31223339	+	IGR	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113037899	113037899	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	156927710	156927710	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	88332099	88332099	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110528198	110528198	+	IGR	DEL	C	-	-			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	18049972	18049972	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180542364	180542364	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25911320	25911320	+	IGR	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882429	29882429	+	IGR	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75371715	75371715	+	IGR	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113544898	113544898	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160132356	160132373	+	IGR	DEL	CTCACACTGCTCTGACCT	-	-	rs79322534		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48181874	48181874	+	IGR	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	52713898	52713898	+	IGR	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93802399	93802399	+	IGR	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56297450	56297450	+	IGR	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62702110	62702110	+	IGR	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7220232	7220232	+	IGR	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	136944026	136944026	+	IGR	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44114626	44114626	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25664409	25664409	+	IGR	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	67991785	67991785	+	IGR	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74547243	74547243	+	IGR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74961473	74961473	+	IGR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74963788	74963788	+	IGR	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VDAC1	7416	broad.mit.edu	37	5	133311789	133311789	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPAR	63894	broad.mit.edu	37	14	77919630	77919630	+	Intron	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VN1R2	317701	broad.mit.edu	37	19	53762196	53762196	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS54	51542	broad.mit.edu	37	2	64147478	64147478	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184654067	184654067	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG10	54621	broad.mit.edu	37	12	118506200	118506200	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF2	10163	broad.mit.edu	37	1	27742500	27742500	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71134995	71134995	+	Silent	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR31	114987	broad.mit.edu	37	9	116091332	116091332	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR36	134430	broad.mit.edu	37	5	110462460	110462460	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR37	22884	broad.mit.edu	37	10	1126036	1126036	+	Silent	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	53907714	53907714	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR75	84128	broad.mit.edu	37	2	190316467	190316467	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1	7468	broad.mit.edu	37	4	1956800	1956800	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31637538	31637538	+	5'UTR	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128881796	128881796	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC5	7520	broad.mit.edu	37	2	216982416	216982416	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YARS2	51067	broad.mit.edu	37	12	32903846	32903846	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167077582	167077582	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC5	25921	broad.mit.edu	37	11	57440692	57440692	+	Intron	SNP	T	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP1	162239	broad.mit.edu	37	16	75204195	75204195	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF229	7772	broad.mit.edu	37	19	44946863	44946863	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF341	84905	broad.mit.edu	37	20	32340105	32340105	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF383	163087	broad.mit.edu	37	19	37734241	37734241	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF383	163087	broad.mit.edu	37	19	37734245	37734245	+	Silent	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF420	147923	broad.mit.edu	37	19	37619576	37619576	+	Silent	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF420	147923	broad.mit.edu	37	19	37619928	37619928	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF429	353088	broad.mit.edu	37	19	21719026	21719026	+	Intron	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF449	203523	broad.mit.edu	37	X	134494262	134494262	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF600	162966	broad.mit.edu	37	19	53269696	53269696	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF610	162963	broad.mit.edu	37	19	52856839	52856839	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53207861	53207861	+	3'UTR	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF618	114991	broad.mit.edu	37	9	116812104	116812104	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF699	374879	broad.mit.edu	37	19	9406091	9406091	+	3'UTR	SNP	T	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF701	55762	broad.mit.edu	37	19	53077548	53077548	+	Intron	SNP	C	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF713	349075	broad.mit.edu	37	7	56007632	56007632	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134428212	134428212	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF781	163115	broad.mit.edu	37	19	38161104	38161104	+	5'UTR	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF790	388536	broad.mit.edu	37	19	37314611	37314611	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF829	374899	broad.mit.edu	37	19	37383497	37383497	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF90	7643	broad.mit.edu	37	19	20216194	20216194	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22940005	22940005	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNRF2	223082	broad.mit.edu	37	7	30395539	30395539	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187702340	187702341	+	Intron	DEL	TA	-	-			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3912869	3912869	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3969896	3969896	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	49327319	49327319	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63359408	63359408	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19856956	19856956	+	RNA	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22788809	22788809	+	Intron	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20489372	20489372	+	Intron	SNP	A	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20490625	20490626	+	Intron	DNP	TG	AT	AT			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186689121	186689121	+	Intron	SNP	C	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96557601	96557601	+	RNA	SNP	A	G	G			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	114035550	114035550	+	5'Flank	SNP	T	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	57390634	57390634	+	Intron	SNP	G	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73149186	73149186	+	Intron	SNP	C	A	A			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84675883	84675883	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
