Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AASDH	132949	broad.mit.edu	37	4	57220956	57220957	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169792773	169792773	+	Silent	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48121986	48121986	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48141376	48141376	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48745281	48745281	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17449829	17449829	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD2	225	broad.mit.edu	37	12	39998605	39998605	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD6	57406	broad.mit.edu	37	3	58253072	58253072	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP3	116983	broad.mit.edu	37	1	1233393	1233393	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX3	8310	broad.mit.edu	37	4	8418235	8418235	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236917490	236917490	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACY3	91703	broad.mit.edu	37	11	67410162	67410163	+	3'UTR	DNP	GG	TT	TT			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106539105	106539105	+	RNA	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106926529	106926529	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107183343	107183343	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73185608	73185608	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64625114	64625114	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84651629	84651629	+	Silent	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31144584	31144584	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70903946	70903946	+	Silent	SNP	G	A	A	rs150530252	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L2	84632	broad.mit.edu	37	10	116064523	116064523	+	Nonsense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2	64902	broad.mit.edu	37	5	35035391	35035391	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSG	197	broad.mit.edu	37	3	186338505	186338505	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIFM2	84883	broad.mit.edu	37	10	71880924	71880924	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIRE	326	broad.mit.edu	37	21	45708424	45708424	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	32902804	32902804	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDOB	229	broad.mit.edu	37	9	104189769	104189769	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG9	79796	broad.mit.edu	37	11	111657158	111657158	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR12	130540	broad.mit.edu	37	2	202207028	202207028	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41550261	41550261	+	Missense_Mutation	SNP	G	T	T	rs148275567	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37481978	37481978	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14809858	14809858	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD56	345079	broad.mit.edu	37	4	77816878	77816878	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS3	124401	broad.mit.edu	37	16	4750843	4750843	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69409624	69409624	+	Splice_Site	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR2	118429	broad.mit.edu	37	4	80905035	80905035	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA13	312	broad.mit.edu	37	8	124748012	124748012	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2A2	161	broad.mit.edu	37	11	988579	988579	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2A2	161	broad.mit.edu	37	11	988746	988746	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3F	200316	broad.mit.edu	37	22	39448223	39448223	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP10	89872	broad.mit.edu	37	1	154294481	154294481	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33387140	33387140	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP1	116985	broad.mit.edu	37	11	72421536	72421536	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141051722	141051722	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP1	392	broad.mit.edu	37	11	46702216	46702216	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP22	58504	broad.mit.edu	37	10	49791330	49791330	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119132757	119132757	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11197549	11197549	+	Silent	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF3	50650	broad.mit.edu	37	3	56763635	56763635	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135769996	135769996	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF7	8874	broad.mit.edu	37	13	111927998	111927998	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131092098	131092098	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB14	142686	broad.mit.edu	37	3	57302535	57302536	+	3'UTR	DNP	GG	TT	TT			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101248359	101248359	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASL	435	broad.mit.edu	37	7	65548112	65548112	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1743139	1743140	+	Intron	DEL	CT	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPRV1	151516	broad.mit.edu	37	2	70188744	70188744	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177001922	177001922	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119770435	119770436	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2A	23130	broad.mit.edu	37	11	64662491	64662491	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160093111	160093111	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160151424	160151424	+	Intron	SNP	T	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77284872	77284872	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50224145	50224145	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142215759	142215760	+	Intron	DNP	TC	AT	AT			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN3L	92552	broad.mit.edu	37	X	13337398	13337398	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVPR1A	552	broad.mit.edu	37	12	63541201	63541201	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVPR1A	552	broad.mit.edu	37	12	63544414	63544414	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AWAT1	158833	broad.mit.edu	37	X	69454532	69454532	+	Translation_Start_Site	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT6	9331	broad.mit.edu	37	18	29225226	29225228	+	Intron	DEL	AAA	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11047558	11047558	+	3'UTR	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70064179	70064179	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARX2	8538	broad.mit.edu	37	11	129246011	129246011	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L1	84726	broad.mit.edu	37	9	134351319	134351319	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT5	7920	broad.mit.edu	37	6	31674671	31674671	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS10	79738	broad.mit.edu	37	12	76740229	76740229	+	Silent	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLM	641	broad.mit.edu	37	15	91312742	91312742	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP7	655	broad.mit.edu	37	20	55758737	55758737	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16419689	16419689	+	Intron	SNP	T	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL1	80341	broad.mit.edu	37	20	31606253	31606253	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN1A1	696	broad.mit.edu	37	6	26508188	26508188	+	Silent	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf71	118461	broad.mit.edu	37	10	50531444	50531444	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40044037	40044037	+	Intron	SNP	T	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112686106	112686106	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf15	28984	broad.mit.edu	37	13	42042950	42042950	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81244339	81244339	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf19	280655	broad.mit.edu	37	14	35409617	35409617	+	RNA	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf28	283987	broad.mit.edu	37	17	72956051	72956052	+	Intron	DNP	CC	AA	AA			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf71	55181	broad.mit.edu	37	17	57288128	57288128	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF9B	387911	broad.mit.edu	37	13	24471191	24471191	+	5'Flank	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf103	55791	broad.mit.edu	37	1	111495394	111495395	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf117	140710	broad.mit.edu	37	20	35443738	35443738	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf30	29058	broad.mit.edu	37	20	5086823	5086823	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf53	339779	broad.mit.edu	37	2	27360443	27360443	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3AR1	719	broad.mit.edu	37	12	8212211	8212211	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf44	80006	broad.mit.edu	37	5	64946614	64946614	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf58	133874	broad.mit.edu	37	5	169661207	169661207	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41160503	41160503	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf10	10665	broad.mit.edu	37	6	32261527	32261527	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf186	728464	broad.mit.edu	37	6	110620165	110620165	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf74	203076	broad.mit.edu	37	8	10555161	10555161	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf74	203076	broad.mit.edu	37	8	10557718	10557718	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf82	79886	broad.mit.edu	37	9	26861082	26861082	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181754858	181754858	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81579777	81579777	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG1	786	broad.mit.edu	37	17	65051404	65051404	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCA	796	broad.mit.edu	37	11	14990285	14990285	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1D	57118	broad.mit.edu	37	10	12833124	12833124	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPNS2	84290	broad.mit.edu	37	16	55601252	55601252	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARNS1	57571	broad.mit.edu	37	11	67191318	67191318	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55027988	55027988	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX8	57332	broad.mit.edu	37	17	77768252	77768252	+	3'UTR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL1	883	broad.mit.edu	37	9	131599855	131599855	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92977954	92977954	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179737078	179737078	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC144A	9720	broad.mit.edu	37	17	16649782	16649782	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55582735	55582735	+	Silent	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL4L2	388372	broad.mit.edu	37	17	34540017	34540017	+	3'UTR	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL8	6355	broad.mit.edu	37	17	32646625	32646625	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74512924	74512924	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7656240	7656240	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD177	57126	broad.mit.edu	37	19	43859930	43859930	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65006037	65006037	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63529993	63529993	+	Silent	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK14	5218	broad.mit.edu	37	7	90613295	90613295	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202671450	202671450	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM6	4680	broad.mit.edu	37	19	42266086	42266086	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP170	9859	broad.mit.edu	37	1	243328308	243328308	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93545297	93545297	+	Intron	SNP	C	G	G	rs141599665	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6206117	6206117	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40046053	40046053	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	447274	447274	+	Missense_Mutation	SNP	G	T	T	rs77982207	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85282427	85282427	+	Intron	DEL	T	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHPF	79586	broad.mit.edu	37	2	220404538	220404538	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM5	1133	broad.mit.edu	37	15	34355202	34355202	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST12	55501	broad.mit.edu	37	7	2473357	2473357	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST8	64377	broad.mit.edu	37	19	34180192	34180192	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHSY3	337876	broad.mit.edu	37	5	129243809	129243809	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB2	10518	broad.mit.edu	37	15	78403368	78403368	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIC	23152	broad.mit.edu	37	19	42797203	42797203	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKM	1158	broad.mit.edu	37	19	45823047	45823047	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4C	170482	broad.mit.edu	37	12	7883347	7883347	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57762959	57762959	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLYBL	171425	broad.mit.edu	37	13	100518493	100518493	+	Splice_Site	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMPK2	129607	broad.mit.edu	37	2	6991603	6991603	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150906832	150906832	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57994860	57994860	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR1	10256	broad.mit.edu	37	1	26515135	26515135	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58583887	58583887	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58587804	58587804	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1427494	1427494	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125547524	125547524	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL10A1	1300	broad.mit.edu	37	6	116442848	116442848	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75831100	75831100	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32149104	32149104	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139606214	139606214	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110807653	110807653	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189922092	189922092	+	Missense_Mutation	SNP	G	C	C	rs150260969	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN1	1369	broad.mit.edu	37	10	101841283	101841283	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1C	126129	broad.mit.edu	37	19	50208532	50208532	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L2	64764	broad.mit.edu	37	7	137570117	137570117	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIPAK	285464	broad.mit.edu	37	4	1388622	1388623	+	Frame_Shift_Ins	INS	-	CA	CA	rs79704405	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAP	10491	broad.mit.edu	37	3	33155722	33155722	+	Silent	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1401547	1401547	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3000045	3000045	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3038664	3038664	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3474274	3474274	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113293308	113293308	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113841835	113841835	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN1S1	1446	broad.mit.edu	37	4	70810750	70810750	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68139118	68139118	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11110843	11110843	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUEDC1	404093	broad.mit.edu	37	17	55950845	55950845	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111729170	111729170	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWF19L2	143884	broad.mit.edu	37	11	107274913	107274913	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWF19L2	143884	broad.mit.edu	37	11	107288834	107288834	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5R4	51167	broad.mit.edu	37	6	84574030	84574031	+	Frame_Shift_Ins	INS	-	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP24A1	1591	broad.mit.edu	37	20	52774238	52774238	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2S1	29785	broad.mit.edu	37	19	41704338	41704338	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP39A1	51302	broad.mit.edu	37	6	46555804	46555804	+	Silent	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH3	9265	broad.mit.edu	37	7	6210909	6210909	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTSB	92521	broad.mit.edu	37	17	19999911	19999911	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85906179	85906179	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85950113	85950113	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125299259	125299259	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885456	88885456	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCBLD2	131566	broad.mit.edu	37	3	98530098	98530098	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50278530	50278530	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155312364	155312364	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTD	1635	broad.mit.edu	37	4	183814239	183814239	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX4	54514	broad.mit.edu	37	5	55042133	55042133	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX58	23586	broad.mit.edu	37	9	32500900	32500900	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169201532	169201532	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169213030	169213030	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB112	245915	broad.mit.edu	37	6	50016252	50016252	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31632903	31632903	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137082166	137082166	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137270015	137270015	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS7C	201140	broad.mit.edu	37	17	9694599	9694599	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96167533	96167533	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96167535	96167535	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DICER1	23405	broad.mit.edu	37	14	95582053	95582053	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38136527	38136527	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83344258	83344258	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83641287	83641287	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1626405	1626405	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRTB1	63948	broad.mit.edu	37	1	53930612	53930612	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124323249	124323250	+	Intron	DNP	GG	TT	TT			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11806089	11806089	+	Silent	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225702469	225702469	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25216687	25216687	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116525980	116525980	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P2	349152	broad.mit.edu	37	7	102883428	102883428	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL2	1808	broad.mit.edu	37	8	26484678	26484678	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105405219	105405220	+	Splice_Site	DNP	CC	AA	AA			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113866431	113866431	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100509832	100509832	+	Intron	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117647604	117647604	+	Missense_Mutation	SNP	C	A	A	rs148829010		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	42064832	42064832	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56472672	56472672	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56483840	56483840	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56485133	56485133	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56496092	56496092	+	Silent	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK4	8798	broad.mit.edu	37	12	4711815	4711816	+	Intron	DNP	GG	TT	TT			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108363233	108363233	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131755503	131755503	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECEL1	9427	broad.mit.edu	37	2	233349015	233349015	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECEL1	9427	broad.mit.edu	37	2	233349417	233349417	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDAR	10913	broad.mit.edu	37	2	109513673	109513673	+	Missense_Mutation	SNP	G	T	T	rs150887314	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRB	1910	broad.mit.edu	37	13	78477406	78477406	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	43996080	43996080	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55218933	55218933	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELANE	1991	broad.mit.edu	37	19	852863	852863	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML3	256364	broad.mit.edu	37	11	62378224	62378224	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66439607	66439607	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97356925	97356925	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX2	2053	broad.mit.edu	37	8	27401287	27401287	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220160406	220160406	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15L1	58513	broad.mit.edu	37	19	16528760	16528760	+	Missense_Mutation	SNP	G	A	A	rs140677972		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERP27	121506	broad.mit.edu	37	12	15091331	15091331	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93101784	93101784	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11	2160	broad.mit.edu	37	4	187197550	187197550	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197021812	197021812	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM111B	374393	broad.mit.edu	37	11	58877060	58877060	+	5'UTR	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139149430	139149430	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139158277	139158277	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139255338	139255338	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175533728	175533728	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34961518	34961518	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190203559	190203559	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43626651	43626651	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAR2	55711	broad.mit.edu	37	12	29450055	29450055	+	Nonsense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD1	79675	broad.mit.edu	37	2	170428301	170428301	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127671131	127671131	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125076538	125076538	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125115560	125115560	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125325762	125325762	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34092356	34092356	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152284709	152284709	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58128605	58128605	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN4	121643	broad.mit.edu	37	12	109723211	109723211	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP1	27086	broad.mit.edu	37	3	71050259	71050259	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR1	2357	broad.mit.edu	37	19	52249336	52249336	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108286598	108286598	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49189813	49189813	+	3'UTR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTMT	94033	broad.mit.edu	37	5	121187598	121187598	+	5'Flank	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD2	2535	broad.mit.edu	37	17	42636375	42636375	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46976477	46976477	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26793272	26793272	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151128485	151128485	+	Intron	SNP	T	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALK2	2585	broad.mit.edu	37	15	49531528	49531528	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155157908	155157908	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT4	8693	broad.mit.edu	37	12	89916817	89916817	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11642800	11642800	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GART	2618	broad.mit.edu	37	21	34907104	34907104	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATC	283459	broad.mit.edu	37	12	120884581	120884582	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCA	25801	broad.mit.edu	37	2	163208789	163208789	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44192964	44192964	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72623793	72623793	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74856165	74856165	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74860278	74860278	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEFT	115557	broad.mit.edu	37	12	58009719	58009719	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLG1	2734	broad.mit.edu	37	16	74502911	74502911	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2	2801	broad.mit.edu	37	9	131022332	131022332	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167754671	167754671	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	95055375	95055376	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6B	2824	broad.mit.edu	37	X	13825626	13825626	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR101	83550	broad.mit.edu	37	X	136113699	136113699	+	Silent	SNP	A	C	C	rs150806941	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR142	350383	broad.mit.edu	37	17	72367995	72367995	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR56	9289	broad.mit.edu	37	16	57695697	57695697	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5C	55890	broad.mit.edu	37	17	72443106	72443106	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37324541	37324541	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104341538	104341538	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM6	2916	broad.mit.edu	37	5	178416254	178416254	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126173981	126173981	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27802613	27802613	+	3'UTR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106697189	106697189	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HABP2	3026	broad.mit.edu	37	10	115345760	115345760	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS1	115106	broad.mit.edu	37	18	43704683	43704683	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBB	3043	broad.mit.edu	37	11	5246887	5246887	+	Missense_Mutation	SNP	C	A	A	rs34502690		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55039655	55039655	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55113548	55113548	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55145137	55145137	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48675905	48675905	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236721500	236721500	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P2	400322	broad.mit.edu	37	15	23330139	23330139	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28467327	28467327	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HINT1	3094	broad.mit.edu	37	5	130500892	130500892	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143091240	143091240	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176323160	176323160	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173534486	173534486	+	Missense_Mutation	SNP	C	A	A	rs151227294	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMSD	284293	broad.mit.edu	37	18	61621801	61621801	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43043227	43043227	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46628146	46628146	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC10	3226	broad.mit.edu	37	12	54379688	54379688	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100242380	100242380	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH1	3269	broad.mit.edu	37	3	11301960	11301960	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPB11	51668	broad.mit.edu	37	1	54395614	54395614	+	Intron	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2A	3356	broad.mit.edu	37	13	47466589	47466589	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IAPP	3375	broad.mit.edu	37	12	21531425	21531425	+	3'UTR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH3G	3421	broad.mit.edu	37	X	153051458	153051458	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI44L	10964	broad.mit.edu	37	1	79107408	79107408	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151165710	151165710	+	Missense_Mutation	SNP	T	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18704825	18704825	+	3'UTR	SNP	A	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17REL	400935	broad.mit.edu	37	22	50439075	50439075	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL25	64806	broad.mit.edu	37	14	23845093	23845093	+	3'UTR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4	3565	broad.mit.edu	37	5	132015313	132015313	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143044605	143044605	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75896573	75896573	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGQ	126298	broad.mit.edu	37	19	44099262	44099262	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX5	10265	broad.mit.edu	37	16	54967483	54967483	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182360546	182360546	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA6	3655	broad.mit.edu	37	2	173355838	173355838	+	Silent	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA7	3679	broad.mit.edu	37	12	56081788	56081788	+	Silent	SNP	C	G	G	rs114735704	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15720606	15720606	+	Intron	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15726161	15726161	+	Intron	SNP	G	T	T	rs7069224	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB5	3693	broad.mit.edu	37	3	124578065	124578065	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54783793	54783793	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35183407	35183407	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24524164	24524164	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147027966	147027966	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124413395	124413395	+	Intron	SNP	A	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNAL2	83473	broad.mit.edu	37	18	44585852	44585852	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNAL2	83473	broad.mit.edu	37	18	44595782	44595782	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNF1	3754	broad.mit.edu	37	2	11054013	11054013	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ11	3767	broad.mit.edu	37	11	17409336	17409336	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88693897	88693897	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154687513	154687513	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36666331	36666331	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD1	284252	broad.mit.edu	37	18	24039513	24039513	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4A	9682	broad.mit.edu	37	1	44132826	44132827	+	Intron	INS	-	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202722038	202722038	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KGFLP2	654466	broad.mit.edu	37	9	41963949	41963949	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1012	22878	broad.mit.edu	37	18	29451056	29451056	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1012	22878	broad.mit.edu	37	18	29451058	29451058	+	Silent	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94046468	94046468	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94079385	94079385	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1804	84451	broad.mit.edu	37	1	233489467	233489467	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73961445	73961445	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF14	9928	broad.mit.edu	37	1	200562772	200562772	+	Intron	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72348372	72348372	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39760732	39760732	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200977969	200977969	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55272307	55272307	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55341568	55341568	+	Silent	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DX1	90011	broad.mit.edu	37	19	55048482	55048482	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL13	90293	broad.mit.edu	37	X	117053387	117053387	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL35	283212	broad.mit.edu	37	11	75136592	75136592	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK3	354	broad.mit.edu	37	19	51361540	51361540	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38953436	38953436	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT2	3849	broad.mit.edu	37	12	53039308	53039308	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT31	3881	broad.mit.edu	37	17	39553787	39553787	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52884697	52884697	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT74	121391	broad.mit.edu	37	12	52963551	52963551	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT86	3892	broad.mit.edu	37	12	52695778	52695778	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-6	386674	broad.mit.edu	37	21	46011577	46011577	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KTN1	3895	broad.mit.edu	37	14	56128173	56128173	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LACRT	90070	broad.mit.edu	37	12	55025703	55025703	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAG3	3902	broad.mit.edu	37	12	6886897	6886897	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6974861	6974861	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107677874	107677874	+	Silent	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN6	158062	broad.mit.edu	37	9	139639594	139639594	+	Intron	SNP	C	A	A	rs57981556		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136587266	136587266	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	36248704	36248704	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEF1	51176	broad.mit.edu	37	4	109010105	109010105	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LENG8	114823	broad.mit.edu	37	19	54969076	54969076	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG3	3980	broad.mit.edu	37	17	33319597	33319597	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG4	3981	broad.mit.edu	37	13	108861556	108861556	+	Silent	SNP	A	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55142814	55142814	+	Intron	DEL	C	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54784409	54784409	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO2	4005	broad.mit.edu	37	11	33886446	33886447	+	Intron	DNP	GG	TT	TT			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMTK2	22853	broad.mit.edu	37	7	97814282	97814282	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165182758	165182758	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100240726	100240726	broad.mit.edu	37	20	45093042	45093042	+	RNA	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442421	442421	broad.mit.edu	37	9	66499758	66499758	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442459	442459	broad.mit.edu	37	X	98975078	98975078	+	RNA	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646813	646813	broad.mit.edu	37	11	50379327	50379327	+	RNA	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC649330	649330	broad.mit.edu	37	1	12907513	12907513	+	Missense_Mutation	SNP	T	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91809292	91809292	+	Intron	DEL	C	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22735569	22735569	+	RNA	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22735572	22735572	+	RNA	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42373401	42373401	+	3'UTR	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT1	26103	broad.mit.edu	37	10	86001051	86001051	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141215321	141215321	+	Intron	SNP	C	A	A	rs75309911	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170070315	170070315	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC15	131578	broad.mit.edu	37	3	194080398	194080398	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC3B	116135	broad.mit.edu	37	3	26751037	26751037	+	5'UTR	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC46	90506	broad.mit.edu	37	17	45911922	45911922	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137021	40137021	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74649254	74649255	+	Frame_Shift_Ins	INS	-	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77745984	77745984	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41111393	41111393	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTB	4050	broad.mit.edu	37	6	31549951	31549951	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166974262	166974262	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALL	7851	broad.mit.edu	37	2	110849133	110849133	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALT1	10892	broad.mit.edu	37	18	56348550	56348550	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21201829	21201829	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K5	5607	broad.mit.edu	37	15	67995595	67995595	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210560646	210560646	+	Missense_Mutation	SNP	G	A	A	rs142649637	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K12	7786	broad.mit.edu	37	12	53876172	53876172	+	Intron	DEL	G	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K12	7786	broad.mit.edu	37	12	53876179	53876179	+	Intron	SNP	G	T	T	rs149342418	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K2	10746	broad.mit.edu	37	2	128083202	128083202	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBNL2	10150	broad.mit.edu	37	13	97928509	97928509	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS1	8720	broad.mit.edu	37	16	84124572	84124572	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS2	51360	broad.mit.edu	37	X	21900607	21900607	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138671989	138671989	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30675940	30675940	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70342771	70342771	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED27	9442	broad.mit.edu	37	9	134889620	134889620	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MELK	9833	broad.mit.edu	37	9	36607500	36607500	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141750658	141750658	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42028381	42028381	+	Nonsense_Mutation	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222798126	222798126	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1246	100302142	broad.mit.edu	37	2	177465819	177465819	+	5'Flank	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR196B	442920	broad.mit.edu	37	7	27209140	27209140	+	RNA	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519B	574469	broad.mit.edu	37	19	54198379	54198379	+	5'Flank	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR523	574471	broad.mit.edu	37	19	54201697	54201697	+	RNA	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR526A1	574475	broad.mit.edu	37	19	54209437	54209437	+	5'Flank	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR526B	574468	broad.mit.edu	37	19	54197611	54197612	+	5'Flank	DNP	CC	AA	AA			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLC1	23209	broad.mit.edu	37	22	50515832	50515832	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151970755	151970755	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168297699	168297699	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP12	4321	broad.mit.edu	37	11	102745501	102745501	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP17	4326	broad.mit.edu	37	12	132325098	132325098	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108723615	108723615	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4L1	10933	broad.mit.edu	37	15	79187165	79187165	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOS	4342	broad.mit.edu	37	8	57026479	57026479	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS36	92259	broad.mit.edu	37	5	68522176	68522176	+	Silent	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60182961	60182961	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151420688	151420688	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTL5	9633	broad.mit.edu	37	11	68480780	68480780	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11319445	11319445	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9049834	9049834	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9063009	9063009	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71346872	71346872	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MVD	4597	broad.mit.edu	37	16	88722590	88722590	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3238371	3238371	+	Silent	SNP	C	A	A	rs142902268		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBBP1A	10514	broad.mit.edu	37	17	4455406	4455406	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL1	4603	broad.mit.edu	37	8	67488646	67488646	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL2	4605	broad.mit.edu	37	20	42343993	42343993	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10359945	10359945	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL1	4632	broad.mit.edu	37	2	211167110	211167110	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL7	58498	broad.mit.edu	37	7	44179350	44179350	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK4	340156	broad.mit.edu	37	6	2683352	2683352	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123359069	123359069	+	Intron	SNP	A	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76919628	76919628	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA11	84779	broad.mit.edu	37	4	80246495	80246495	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	174974333	174974333	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAIF1	203245	broad.mit.edu	37	9	130829282	130829282	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAMPT	10135	broad.mit.edu	37	7	105909741	105909741	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARS2	79731	broad.mit.edu	37	11	78204204	78204204	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19955296	19955296	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20066491	20066491	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20067038	20067038	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145330633	145330633	+	Intron	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145567848	145567849	+	Intron	INS	-	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16892596	16892596	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16893413	16893413	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22907044	22907044	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH	23397	broad.mit.edu	37	2	97025861	97025861	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124870472	124870472	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDC80	10403	broad.mit.edu	37	18	2577894	2577894	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG1	10397	broad.mit.edu	37	8	134254109	134254109	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21191533	21191533	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFX1	4799	broad.mit.edu	37	9	33338636	33338636	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGB	58157	broad.mit.edu	37	14	77737211	77737211	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4Y	22829	broad.mit.edu	37	Y	16942192	16942192	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55445797	55445797	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56485022	56485022	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMT2	9397	broad.mit.edu	37	10	15177483	15177483	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS2	4862	broad.mit.edu	37	2	101581279	101581279	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34145375	34145375	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44579884	44579884	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPNT	255743	broad.mit.edu	37	4	106858268	106858268	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153654151	153654151	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY1R	4886	broad.mit.edu	37	4	164246971	164246971	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR4A3	8013	broad.mit.edu	37	9	102590739	102590739	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR6A1	2649	broad.mit.edu	37	9	127302510	127302510	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32621581	32621581	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51254604	51254604	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUAK1	9891	broad.mit.edu	37	12	106477527	106477527	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228495021	228495021	+	Silent	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167673641	167673641	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167689182	167689182	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLAH	55301	broad.mit.edu	37	10	15103770	15103770	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G7	390265	broad.mit.edu	37	11	123909454	123909454	+	Silent	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11A1	26531	broad.mit.edu	37	6	29394566	29394566	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248138773	248138773	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248344044	248344045	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248550933	248550933	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248551538	248551538	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20295562	20295562	+	5'Flank	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20295869	20295869	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5J2	282775	broad.mit.edu	37	11	55944979	55944979	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8I2	120586	broad.mit.edu	37	11	55860845	55860845	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G4	283189	broad.mit.edu	37	11	56510579	56510579	+	Missense_Mutation	SNP	G	A	A	rs142738268	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL1A	114876	broad.mit.edu	37	18	21897448	21897448	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL6	114880	broad.mit.edu	37	2	179192944	179192944	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21730668	21730668	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HB	5034	broad.mit.edu	37	17	79805065	79805065	+	Intron	SNP	A	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALB2	79728	broad.mit.edu	37	16	23641491	23641491	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAN3	255967	broad.mit.edu	37	13	28835440	28835440	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25449488	25449488	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134073219	134073219	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134084244	134084245	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55569344	55569344	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99551651	99551651	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	31144138	31144138	+	Silent	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140167627	140167628	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA2	56146	broad.mit.edu	37	5	140174650	140174651	+	Nonsense_Mutation	DNP	CC	AG	AG			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140222651	140222651	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140605248	140605248	+	Missense_Mutation	SNP	G	A	A	rs142658705		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140718872	140718872	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142545887	142545887	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PC	5091	broad.mit.edu	37	11	66619834	66619834	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14856585	14856585	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144867764	144867764	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7A	5150	broad.mit.edu	37	8	66637187	66637187	+	Intron	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE8B	8622	broad.mit.edu	37	5	76704700	76704700	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156880233	156880233	+	Intron	DEL	C	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGGT1B	5229	broad.mit.edu	37	5	114571929	114571929	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5P2	595135	broad.mit.edu	37	9	69118026	69118026	+	Intron	SNP	A	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGS1	9489	broad.mit.edu	37	17	76395662	76395662	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11046418	11046418	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11046529	11046529	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB2	90102	broad.mit.edu	37	3	111564658	111564658	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHYH	5264	broad.mit.edu	37	10	13325783	13325783	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4C	8605	broad.mit.edu	37	19	48556422	48556422	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G7	7941	broad.mit.edu	37	6	46679936	46679936	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8737868	8737868	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8862318	8862318	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	95994067	95994067	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18892214	18892214	+	5'Flank	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144997456	144997456	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLUNC	51297	broad.mit.edu	37	20	31825664	31825664	+	Silent	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA3	55558	broad.mit.edu	37	X	153692733	153692733	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2CL	441194	broad.mit.edu	37	7	6777191	6777191	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLDIP2	26073	broad.mit.edu	37	17	26680783	26680783	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2B	5431	broad.mit.edu	37	4	57871515	57871515	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121	9883	broad.mit.edu	37	7	72398843	72398843	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38160179	38160179	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43152285	43152285	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	132021677	132021678	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130867958	130867958	+	Intron	SNP	T	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11117981	11117981	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47276568	47276568	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKACB	5567	broad.mit.edu	37	1	84610341	84610341	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKACB	5567	broad.mit.edu	37	1	84610356	84610356	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54406361	54406361	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48775078	48775078	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKX	5613	broad.mit.edu	37	X	3573108	3573108	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM2	150696	broad.mit.edu	37	2	95952241	95952241	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45122459	45122459	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE	58497	broad.mit.edu	37	1	150980993	150980993	+	5'UTR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43420707	43420707	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC4	5704	broad.mit.edu	37	19	40478082	40478082	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11596579	11596579	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPLA	9200	broad.mit.edu	37	10	17636083	17636083	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8713808	8713808	+	Intron	SNP	A	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220161165	220161165	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52321549	52321549	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9303276	9303276	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSOX1	5768	broad.mit.edu	37	1	180135707	180135707	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QTRTD1	79691	broad.mit.edu	37	3	113784371	113784371	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB37	326624	broad.mit.edu	37	17	72739393	72739393	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB6A	5870	broad.mit.edu	37	11	73441889	73441889	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174606543	174606543	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAET1L	154064	broad.mit.edu	37	6	150342443	150342443	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37126060	37126060	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP17	64901	broad.mit.edu	37	5	170679968	170679968	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEFL1	51195	broad.mit.edu	37	17	38340712	38340712	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178389559	178389559	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM16	22828	broad.mit.edu	37	6	155145563	155145563	+	Intron	SNP	G	A	A	rs144654888	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79386527	79386527	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103205881	103205881	+	Missense_Mutation	SNP	T	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL1	23179	broad.mit.edu	37	1	183873865	183873865	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGR	5995	broad.mit.edu	37	10	86008012	86008012	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS18	64407	broad.mit.edu	37	1	192150556	192150556	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS20	8601	broad.mit.edu	37	8	54764487	54764487	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72984966	72984966	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241518927	241518927	+	Intron	SNP	T	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHEB	6009	broad.mit.edu	37	7	151181738	151181738	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLIM	51132	broad.mit.edu	37	X	73811802	73811802	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144B	255488	broad.mit.edu	37	6	18399717	18399717	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF168	165918	broad.mit.edu	37	3	196210727	196210727	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78327866	78327866	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF217	154214	broad.mit.edu	37	6	125404010	125404010	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF5P1	286140	broad.mit.edu	37	8	38458252	38458252	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77651358	77651358	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO3	64221	broad.mit.edu	37	11	124740590	124740590	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94495762	94495763	+	Intron	DNP	CG	TC	TC			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10464888	10464888	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10466260	10466260	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55539627	55539627	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPA4	29935	broad.mit.edu	37	X	96139656	96139656	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21771691	21771691	+	Silent	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21793123	21793123	+	Silent	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS25	6230	broad.mit.edu	37	11	118889011	118889011	+	5'UTR	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KL1	83694	broad.mit.edu	37	14	75376887	75376887	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP12	23223	broad.mit.edu	37	10	99126615	99126615	+	Silent	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP9	9136	broad.mit.edu	37	3	51968607	51968607	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSAD1	55316	broad.mit.edu	37	17	48561096	48561096	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	123005089	123005089	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTP3	83597	broad.mit.edu	37	3	46539429	46539429	+	5'Flank	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67727029	67727029	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93003969	93003969	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38934511	38934511	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39009665	39009665	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAAL1	113174	broad.mit.edu	37	11	18103004	18103004	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51174546	51174546	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD13	148418	broad.mit.edu	37	1	84815188	84815188	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMM50	25813	broad.mit.edu	37	22	44353026	44353026	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP130	79595	broad.mit.edu	37	2	128775259	128775259	+	Missense_Mutation	SNP	T	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200173430	200173430	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50893614	50893614	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBK1	388228	broad.mit.edu	37	16	28331793	28331793	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCG2	7857	broad.mit.edu	37	2	224462250	224462250	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38784124	38784124	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38651479	38651479	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71346823	71346824	+	Frame_Shift_Ins	INS	-	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELL	6402	broad.mit.edu	37	1	169677729	169677729	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169581705	169581705	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMG1	6406	broad.mit.edu	37	20	43836174	43836174	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95081151	95081151	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61310851	61310851	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK3	23678	broad.mit.edu	37	8	67763155	67763155	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51218870	51218870	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC1	6614	broad.mit.edu	37	20	3672474	3672474	+	Intron	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC9	27180	broad.mit.edu	37	19	51629331	51629331	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIP1	8487	broad.mit.edu	37	14	39583504	39583504	+	Translation_Start_Site	DEL	G	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232581228	232581228	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232600634	232600634	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRT6	51548	broad.mit.edu	37	19	4180786	4180786	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX2	10736	broad.mit.edu	37	2	45235686	45235686	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX6	4990	broad.mit.edu	37	14	60976591	60976591	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A3	64849	broad.mit.edu	37	20	45188622	45188622	+	3'UTR	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A3	64849	broad.mit.edu	37	20	45191994	45191994	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A7	57030	broad.mit.edu	37	19	49937171	49937171	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC20A2	6575	broad.mit.edu	37	8	42275403	42275403	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92911697	92911697	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A11	151258	broad.mit.edu	37	2	165765142	165765142	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A2	54407	broad.mit.edu	37	12	46756848	46756848	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A11	83959	broad.mit.edu	37	20	3218177	3218177	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74479366	74479366	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101603528	101603528	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A12	6539	broad.mit.edu	37	12	302382	302382	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40657160	40657160	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A8	23315	broad.mit.edu	37	20	48431651	48431651	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143550975	143550975	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21446879	21446879	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21450278	21450278	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC3	9126	broad.mit.edu	37	10	112356221	112356221	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG7	9887	broad.mit.edu	37	1	183503064	183503064	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25312885	25312885	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP200	23020	broad.mit.edu	37	2	96971126	96971126	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX31	169166	broad.mit.edu	37	8	101620667	101620667	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX31	169166	broad.mit.edu	37	8	101648076	101648076	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SON	6651	broad.mit.edu	37	21	34931472	34931472	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SON	6651	broad.mit.edu	37	21	34931573	34931573	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106971025	106971025	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16506036	16506036	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARCL1	8404	broad.mit.edu	37	4	88411812	88411812	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228884871	228884871	+	Silent	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPPL2A	84888	broad.mit.edu	37	15	51041888	51041888	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55648310	55648310	+	5'Flank	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPSB1	80176	broad.mit.edu	37	1	9416181	9416181	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131346861	131346861	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTY2D1	144108	broad.mit.edu	37	11	18655966	18655966	+	5'UTR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A2	6716	broad.mit.edu	37	2	31751320	31751320	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9106117	9106117	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX	8406	broad.mit.edu	37	X	38024248	38024248	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53076548	53076548	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA1	6489	broad.mit.edu	37	12	22487122	22487122	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104084208	104084208	+	Missense_Mutation	SNP	T	G	G	rs150834304		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT1	6772	broad.mit.edu	37	2	191856010	191856010	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT3	6774	broad.mit.edu	37	17	40474406	40474406	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP2	6813	broad.mit.edu	37	19	7707105	7707105	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	121037523	121037523	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOPL	136306	broad.mit.edu	37	7	138333645	138333645	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYBU	55638	broad.mit.edu	37	8	110587660	110587660	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46345342	46345342	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNRG	11276	broad.mit.edu	37	17	35930851	35930851	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR3	6870	broad.mit.edu	37	4	104577495	104577496	+	Frame_Shift_Ins	INS	-	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D14	57533	broad.mit.edu	37	4	6969151	6969151	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX15	6913	broad.mit.edu	37	1	119427386	119427386	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3B	51224	broad.mit.edu	37	18	44561664	44561664	+	5'UTR	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3C	162699	broad.mit.edu	37	18	44555242	44555242	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152081990	152081990	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP10L2	401285	broad.mit.edu	37	6	167587502	167587502	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65188411	65188411	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20864835	20864835	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122760216	122760216	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAL1	7073	broad.mit.edu	37	10	121335210	121335210	+	Silent	SNP	G	A	A	rs139964504	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155465670	155465670	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60663513	60663513	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35699425	35699425	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63058593	63058593	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO5A	145942	broad.mit.edu	37	15	38243304	38243304	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM106B	54664	broad.mit.edu	37	7	12270859	12270859	+	Intron	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM150B	284417	broad.mit.edu	37	19	55831571	55831571	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130762587	130762587	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM225	338661	broad.mit.edu	37	11	123755300	123755300	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM41B	440026	broad.mit.edu	37	11	9332874	9332874	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM59L	25789	broad.mit.edu	37	19	18724957	18724957	+	Silent	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM90A	646658	broad.mit.edu	37	14	74874738	74874738	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11B	132724	broad.mit.edu	37	4	69097025	69097025	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11B	132724	broad.mit.edu	37	4	69111384	69111384	+	Translation_Start_Site	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29786214	29786214	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI2	7136	broad.mit.edu	37	11	1860845	1860845	+	5'Flank	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47409269	47409269	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP1MT	116447	broad.mit.edu	37	8	144398310	144398310	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42694601	42694601	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH1	7166	broad.mit.edu	37	11	18047088	18047089	+	Intron	DNP	CC	AA	AA			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72366394	72366394	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10959690	10959690	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF2	7186	broad.mit.edu	37	9	139815544	139815544	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42226305	42226305	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141415595	141415595	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM26	7726	broad.mit.edu	37	6	30156316	30156316	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM37	4591	broad.mit.edu	37	17	57139868	57139868	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140401341	140401341	+	Missense_Mutation	SNP	C	A	A	rs149207203	byFrequency	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140401536	140401536	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT6	51605	broad.mit.edu	37	20	5921898	5921898	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234872049	234872049	+	Intron	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234894523	234894523	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142572553	142572553	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81448842	81448842	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ1	10194	broad.mit.edu	37	18	72999000	72999000	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN19	144448	broad.mit.edu	37	12	85413327	85413327	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN31	6302	broad.mit.edu	37	12	58140819	58140819	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN9	10867	broad.mit.edu	37	12	3321069	3321070	+	Intron	INS	-	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL3	26140	broad.mit.edu	37	3	9877020	9877020	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179433898	179433898	+	Missense_Mutation	SNP	T	C	C	rs75544937		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA1A	7846	broad.mit.edu	37	12	49582593	49582593	+	5'Flank	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22867135	22867135	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWISTNB	221830	broad.mit.edu	37	7	19738228	19738228	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	88911788	88911788	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF2	11338	broad.mit.edu	37	19	56180771	56180771	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D4	51619	broad.mit.edu	37	7	43982358	43982358	+	Intron	SNP	C	T	T	rs146469919	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2NL	389898	broad.mit.edu	37	X	142967514	142967515	+	Missense_Mutation	DNP	AG	TC	TC			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN3	50613	broad.mit.edu	37	11	5530858	5530858	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210640845	210640845	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158980300	158980300	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPRT	139596	broad.mit.edu	37	X	74519631	74519631	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URGCP	55665	broad.mit.edu	37	7	43959291	43959291	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215807654	215807654	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215963748	215963748	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216074275	216074275	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216256730	216256730	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216424528	216424528	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP17L2	377630	broad.mit.edu	37	8	11994734	11994734	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP36	57602	broad.mit.edu	37	17	76794510	76794510	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144844215	144844215	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	112864874	112864874	+	IGR	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38894637	38894637	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42672418	42672418	+	IGR	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42680899	42680899	+	IGR	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	61311180	61311180	+	IGR	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	107047057	107047057	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119692847	119692847	+	IGR	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27910499	27910499	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43543458	43543458	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4496643	4496643	+	IGR	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48454259	48454259	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49056099	49056099	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49385506	49385506	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49893574	49893574	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49897928	49897928	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55482493	55482493	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55588106	55588106	+	IGR	SNP	A	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55799000	55799000	+	IGR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56236984	56236984	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59665982	59665982	+	IGR	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71869990	71869990	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	114987348	114987348	+	IGR	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	2851892	2851893	+	IGR	DNP	CC	AT	AT			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	44053658	44053658	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55516473	55516473	+	IGR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55688044	55688044	+	IGR	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59103380	59103380	+	IGR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90823893	90823893	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137607	20137607	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44589733	44589733	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	64201869	64201869	+	IGR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60060667	60060667	+	IGR	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	85816212	85816212	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32178155	32178155	+	IGR	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32621788	32621788	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32626748	32626748	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33408688	33408688	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33740727	33740727	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55780671	55780671	+	IGR	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	83393	83393	+	IGR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20493682	20493682	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20602256	20602256	+	IGR	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	47501685	47501685	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	69617249	69617249	+	IGR	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	76571154	76571154	+	IGR	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14189135	14189135	+	IGR	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14632099	14632099	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20877949	20877949	+	IGR	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23675500	23675500	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53818674	53818674	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	105977369	105977369	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149102009	149102009	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158146272	158146272	+	IGR	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158493459	158493459	+	IGR	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189958889	189958889	+	IGR	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219785191	219785191	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221307391	221307391	+	IGR	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248436006	248436006	+	IGR	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248605384	248605384	+	IGR	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79216271	79216271	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10623273	10623273	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10885175	10885175	+	IGR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181375	11181375	+	IGR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14798788	14798788	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14800149	14800149	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20230438	20230438	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24763338	24763338	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349612	16349612	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16405828	16405828	+	IGR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17339897	17339897	+	IGR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	128006990	128006990	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194994713	194994713	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	209007187	209007187	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	43054676	43054676	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72211276	72211276	+	IGR	SNP	A	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91636123	91636123	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91777961	91777961	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91894188	91894188	+	IGR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91936222	91936222	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	127006293	127006293	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	132105597	132105597	+	IGR	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186479142	186479142	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88997897	88997897	+	IGR	SNP	C	G	G	rs150585321	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88998256	88998256	+	IGR	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96473301	96473301	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	104494641	104494641	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117519623	117519623	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	16362790	16362790	+	IGR	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	163906322	163906322	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64216814	64216814	+	IGR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70222506	70222506	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70283840	70283840	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110320017	110320017	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	115387638	115387638	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	116052293	116052293	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	138872516	138872516	+	IGR	SNP	G	T	T	rs142831094	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30365629	30365629	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	54153464	54153464	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	61127857	61127857	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75216903	75216903	+	IGR	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	76878841	76878841	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84845651	84845651	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	30664723	30664723	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	64326324	64326324	+	IGR	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	121874796	121874796	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12511690	12511690	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665798	56665798	+	IGR	SNP	G	T	T	rs73113980	by1000genomes	TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217172	57217172	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57484864	57484864	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57833056	57833056	+	IGR	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65082042	65082042	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6968227	6968227	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9767175	9767175	+	IGR	SNP	T	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106208993	106208993	+	IGR	SNP	A	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43358939	43358939	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64445821	64445821	+	IGR	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	28863606	28863606	+	IGR	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44175094	44175094	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	45362594	45362594	+	IGR	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122251710	122251710	+	IGR	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	14262420	14262420	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25664174	25664174	+	IGR	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48187014	48187014	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52612982	52612982	+	IGR	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72745055	72745055	+	IGR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85339656	85339656	+	IGR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	970734	970734	+	IGR	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAC14	55697	broad.mit.edu	37	16	70732762	70732762	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VARS2	57176	broad.mit.edu	37	6	30884915	30884915	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82808109	82808109	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82868259	82868259	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177608442	177608442	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGF	7425	broad.mit.edu	37	7	100806508	100806508	+	Silent	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS54	51542	broad.mit.edu	37	2	64211150	64211150	+	5'UTR	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM1	284415	broad.mit.edu	37	19	54567134	54567134	+	5'UTR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6131129	6131129	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDHD1	11169	broad.mit.edu	37	14	55411137	55411137	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR63	126820	broad.mit.edu	37	1	85547000	85547000	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241904910	241904910	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR78	79819	broad.mit.edu	37	1	67299561	67299561	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54363729	54363729	+	Intron	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR81	124997	broad.mit.edu	37	17	1639551	1639551	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR90	197335	broad.mit.edu	37	16	701983	701983	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT8A	7478	broad.mit.edu	37	5	137424664	137424664	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT8A	7478	broad.mit.edu	37	5	137427065	137427065	+	3'UTR	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32418005	32418005	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP1	165904	broad.mit.edu	37	3	39226990	39226990	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168098538	168098538	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168099625	168099625	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10756538	10756538	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YES1	7525	broad.mit.edu	37	18	736745	736745	+	Intron	SNP	T	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZADH2	284273	broad.mit.edu	37	18	72921030	72921030	+	5'UTR	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H4	23211	broad.mit.edu	37	19	47584880	47584880	+	Splice_Site	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207174292	207174292	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC11	79844	broad.mit.edu	37	5	840719	840719	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31809063	31809063	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145158893	145158893	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFR	51663	broad.mit.edu	37	5	32415138	32415138	+	Silent	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68244368	68244368	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND10	51364	broad.mit.edu	37	3	50379321	50379321	+	Silent	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF107	51427	broad.mit.edu	37	7	64126488	64126488	+	5'Flank	SNP	G	C	C	rs111486654		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF131	7690	broad.mit.edu	37	5	43143484	43143484	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF135	7694	broad.mit.edu	37	19	58578379	58578379	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF215	7762	broad.mit.edu	37	11	6977862	6977862	+	3'UTR	SNP	A	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74593429	74593430	+	Frame_Shift_Ins	INS	-	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385B	151126	broad.mit.edu	37	2	180634429	180634429	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF408	79797	broad.mit.edu	37	11	46727238	46727238	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF43	7594	broad.mit.edu	37	19	21990856	21990856	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF480	147657	broad.mit.edu	37	19	52819189	52819189	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF484	83744	broad.mit.edu	37	9	95609741	95609741	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22902163	22902163	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039485	31039485	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF592	9640	broad.mit.edu	37	15	85328123	85328123	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780B	163131	broad.mit.edu	37	19	40541581	40541581	+	Silent	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF786	136051	broad.mit.edu	37	7	148767932	148767932	+	Silent	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF813	126017	broad.mit.edu	37	19	53994890	53994890	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN4	201516	broad.mit.edu	37	19	58189890	58189890	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3937517	3937517	+	Frame_Shift_Del	DEL	C	-	-	rs141392657		TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	51822395	51822395	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31269262	31269262	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31312021	31312021	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19857070	19857070	+	RNA	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22965836	22965836	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25483275	25483275	+	Intron	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	28947709	28947709	+	5'Flank	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	32606187	32606187	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	28965716	28965716	+	Intron	SNP	C	G	G			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34739714	34739714	+	RNA	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35316630	35316631	+	Intron	DNP	CG	GA	GA			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90008065	90008065	+	RNA	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90414197	90414197	+	Intron	SNP	G	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180538785	180538785	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142000723	142000723	+	5'Flank	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142334562	142334562	+	Intron	SNP	C	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	125155167	125155167	+	Intron	SNP	T	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86568019	86568019	+	5'Flank	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66517681	66517681	+	Intron	SNP	G	T	T			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
