Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614415	6614415	+	Missense_Mutation	SNP	A	A	G	rs6693400		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17318535	17318535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	48	1	47	0	0
FUCA1	2517	hgsc.bcm.edu	37	1	24194773	24194773	+	Missense_Mutation	SNP	G	G	A	rs2070955	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
CATSPER4	378807	bcgsc.ca	37	1	26527951	26527951	+	Missense_Mutation	SNP	G	G	A	rs6657616	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
EFCAB14	9813	ucsc.edu	37	1	47149061	47149061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	19	19	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	4	0	4	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	0	1	0	0
USH2A	7399	ucsc.edu	37	1	215956274	215956274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
C1orf229	388759	hgsc.bcm.edu	37	1	247275218	247275218	+	Silent	SNP	C	C	G	rs141557009		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
FAM35BP	414241	bcgsc.ca;mdanderson.org	37	10	46934806	46934806	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	2	0	2	0	0
FAM35DP	439965	ucsc.edu;bcgsc.ca	37	10	47416895	47416895	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	3	3	0	0	0
CDH23	64072	bcgsc.ca	37	10	73270906	73270906	+	Silent	SNP	T	T	C	rs3802720	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MIR608	693193	ucsc.edu;bcgsc.ca	37	10	102734778	102734778	+	RNA	SNP	C	C	G	rs4919510	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
CUEDC2	79004	broad.mit.edu;bcgsc.ca	37	10	104183193	104183193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	120	119	0	0	1
COL17A1	1308	broad.mit.edu	37	10	105816838	105816838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MKI67	4288	hgsc.bcm.edu	37	10	129899793	129899793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	21	21	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134218296	134218296	+	Missense_Mutation	SNP	C	C	G	rs10747057	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	5	0	5	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
WEE1	7465	hgsc.bcm.edu	37	11	9595897	9595897	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	27	0	27	0	0
FAM86C2P	645332	bcgsc.ca	37	11	67560799	67560799	+	RNA	SNP	T	T	A	rs201759935		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
KRTAP5-7	440050	bcgsc.ca	37	11	71238685	71238685	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
GRIN2B	2904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	13717131	13717131	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21960411	21960411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
LOC100335030	0	bcgsc.ca	37	12	49783193	49783193	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
KRT2	3849	ucsc.edu	37	12	53045615	53045615	+	Silent	SNP	A	A	G	rs75253159	bycluster;byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MDM2	4193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69233423	69233423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	2	1	1	0	0
SLC9A7P1	121456	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	98849194	98849194	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	1	0	0	0
STAB2	55576	hgsc.bcm.edu	37	12	104025393	104025453	+	Frame_Shift_Del	DEL	GGGGTGTGCAACAGTGGACTAGATGGCGATGGAACCTGTGAGTGCTACTCTGCGTACACTG	GGGGTGTGCAACAGTGGACTAGATGGCGATGGAACCTGTGAGTGCTACTCTGCGTACACTG	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	GGGGTGTGCAACAGTGGACTAGATGGCGATGGAACCTGTGAGTGCTACTCTGCGTACACTG	GGGGTGTGCAACAGTGGACTAGATGGCGATGGAACCTGTGAGTGCTACTCTGCGTACACTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
NCOR2	9612	hgsc.bcm.edu	37	12	124821523	124821523	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	16	6	9	0	1
SPERT	220082	hgsc.bcm.edu	37	13	46288017	46288017	+	Nonsense_Mutation	SNP	C	C	A	rs79707842		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TRIM13	10206	hgsc.bcm.edu;bcgsc.ca	37	13	50588527	50588530	+	RNA	DEL	ATAT	ATAT	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	ATAT	ATAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
RBM23	55147	ucsc.edu	37	14	23371268	23371268	+	Silent	SNP	A	A	G	rs56708790	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	32	16	16	0	0
OTX2	5015	ucsc.edu;bcgsc.ca	37	14	57272121	57272121	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ACOT4	122970	hgsc.bcm.edu	37	14	74058832	74058832	+	Missense_Mutation	SNP	C	C	T	rs3742819		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	19	13	6	0	0
HERC2P3	283755	broad.mit.edu	37	15	20644564	20644564	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	15	15	0	0	0
HERC2P3	283755	broad.mit.edu	37	15	20644585	20644585	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	15	15	0	0	0
ARRDC4	91947	hgsc.bcm.edu	37	15	98504326	98504326	+	Missense_Mutation	SNP	A	A	G	rs12101554	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	0	1	0	0
RPS2	6187	hgsc.bcm.edu	37	16	2014528	2014528	+	Silent	SNP	G	G	A	rs17135712	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	270	82	187	1	0
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3304219	3304219	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
GGA2	23062	hgsc.bcm.edu	37	16	23521643	23521643	+	Silent	SNP	G	G	C	rs1071685	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28842312	28842312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
CDH15	1013	hgsc.bcm.edu	37	16	89258747	89258747	+	Missense_Mutation	SNP	A	A	C	rs75791347	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7579311	7579311	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	6	0	6	0	0
CCDC144B	284047	bcgsc.ca	37	17	18476229	18476229	+	RNA	SNP	T	T	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1613	1609	4	0	0
FLJ36000	0	bcgsc.ca	37	17	21904175	21904175	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
FOXN1	8456	broad.mit.edu	37	17	26851082	26851082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MYO18A	399687	broad.mit.edu	37	17	27437604	27437604	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	1	0	0	0
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29187537	29187537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
GPR179	440435	broad.mit.edu	37	17	36499001	36499001	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TBX21	30009	hgsc.bcm.edu	37	17	45810919	45810919	+	Missense_Mutation	SNP	C	C	G	rs2240017	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TBX2	6909	broad.mit.edu	37	17	59479224	59479224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	1	0	0	0
TMEM200C	645369	hgsc.bcm.edu	37	18	5890571	5890571	+	Missense_Mutation	SNP	T	T	C	rs7506026		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MADCAM1	8174	bcgsc.ca	37	19	501701	501701	+	Missense_Mutation	SNP	G	G	A	rs72970252	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	0	1	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619348	1619348	+	Silent	SNP	G	G	A	rs1052696	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619350	1619350	+	Missense_Mutation	SNP	C	C	T	rs1052692	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
REXO1	57455	hgsc.bcm.edu	37	19	1828401	1828401	+	Silent	SNP	G	G	A	rs185543381	by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	3	0	3	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8400651	8400651	+	Silent	SNP	C	C	G	rs11669559	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8651052	8651052	+	Missense_Mutation	SNP	G	G	T	rs200370843		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	2	2	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9057171	9057171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TMED1	11018	broad.mit.edu	37	19	10946806	10946806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	12	12	0	0	0
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	18	18	0	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	7	7	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ZNF229	7772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44934458	44934458	+	Silent	SNP	G	G	A	rs185368876		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	8	1	7	0	0
BCL3	602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45260388	45260388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	57	22	35	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	21	10	11	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	3	0	3	0	0
ZNF473	25888	broad.mit.edu	37	19	50548742	50548742	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	9	9	0	0	0
CTU1	90353	hgsc.bcm.edu	37	19	51602298	51602298	+	Missense_Mutation	SNP	C	C	G	rs12983578		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	4	0	4	0	0
PPP6R1	22870	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55758252	55758252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	0	1	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ZNF134	7693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58132312	58132312	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	20	7	13	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
PKDCC	91461	hgsc.bcm.edu	37	2	42275726	42275726	+	Silent	SNP	C	C	G	rs11891679	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
SOCS5	9655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	46987103	46987103	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	0	1	0	0
MRPL53	116540	bcgsc.ca	37	2	74699702	74699702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	5	5	0	0	0
ATOH8	84913	hgsc.bcm.edu	37	2	85981761	85981761	+	Missense_Mutation	SNP	T	T	C	rs17851881		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
SNED1	25992	hgsc.bcm.edu	37	2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	rs17440466	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	6	0	6	0	0
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3209573	3209573	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	2	2	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26062225	26062234	+	RNA	DEL	TGCAGACCAG	TGCAGACCAG	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
GATA5	140628	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61048581	61048581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	147	135	12	0	0
KCNQ2	3785	broad.mit.edu	37	20	62038077	62038077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MX2	4600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	42749766	42749766	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	1	0	0	0
RRP1	8568	bcgsc.ca	37	21	45211298	45211298	+	Missense_Mutation	SNP	C	C	A	rs201407956	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	37	36	1	0	0
ADARB1	104	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46640924	46640924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
GUSBP11	91316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	23980868	23980868	+	RNA	SNP	C	C	A	rs16994633	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	26	26	0	0	0
PATZ1	23598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	31741420	31741420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	4	4	0	0	0
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42271554	42271554	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MOV10L1	54456	bcgsc.ca	37	22	50528916	50528916	+	Silent	SNP	C	C	T	rs9617018	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TMEM158	25907	hgsc.bcm.edu	37	3	45267310	45267310	+	Silent	SNP	C	C	T	rs41118	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
CHDH	55349	hgsc.bcm.edu	37	3	53857917	53857917	+	Missense_Mutation	SNP	T	T	G	rs9001	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	2	2	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	13	2	11	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	21	10	11	0	0
DRD5	1816	ucsc.edu	37	4	9784617	9784617	+	Missense_Mutation	SNP	T	T	C	rs112029473	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
PCDH7	5099	broad.mit.edu;bcgsc.ca	37	4	30724413	30724413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	rs35771241		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MTTP	4547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100512918	100512918	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	2	0	2	0	0
IL2	3558	ucsc.edu;bcgsc.ca	37	4	123372913	123372913	+	Silent	SNP	C	C	T	rs1051753		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
FRG1	2483	bcgsc.ca	37	4	190876277	190876277	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	161	161	0	0	0
LRRC14B	389257	hgsc.bcm.edu	37	5	191992	191992	+	Silent	SNP	G	G	A	rs34710524	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
PDCD6	10016	hgsc.bcm.edu	37	5	271858	271869	+	In_Frame_Del	DEL	CCGGCCCTGGGG	CCGGCCCTGGGG	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	CCGGCCCTGGGG	CCGGCCCTGGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	1	0	0	0
ZFYVE16	9765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79733160	79733160	+	Missense_Mutation	SNP	A	A	G	rs141062809		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	1	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950712	79950738	+	In_Frame_Del	DEL	GCGGCCGCAGCGGCCGCAGCGCCCCCA	GCGGCCGCAGCGGCCGCAGCGCCCCCA	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	GCGGCCGCAGCGGCCGCAGCGCCCCCA	GCGGCCGCAGCGGCCGCAGCGCCCCCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950718	79950718	+	Missense_Mutation	SNP	G	G	C	rs148550291		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950724	79950724	+	Missense_Mutation	SNP	G	G	C	rs2001675		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950742	79950750	+	In_Frame_Del	DEL	CCCCCAGCT	CCCCCAGCT	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	CCCCCAGCT	CCCCCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	2	0	2	0	0
DND1	373863	hgsc.bcm.edu	37	5	140052320	140052320	+	Missense_Mutation	SNP	T	T	C	rs201446376	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	2	2	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	24	24	0	0	0
N4BP3	23138	broad.mit.edu	37	5	177547312	177547312	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	1	0	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039098	30039098	+	Silent	SNP	T	T	C	rs2301754		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039364	30039364	+	Missense_Mutation	SNP	C	C	A	rs11753382		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039373	30039373	+	Missense_Mutation	SNP	G	G	C	rs61754472		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TNXB	7148	bcgsc.ca	37	6	32017173	32017173	+	Missense_Mutation	SNP	G	G	C	rs41270450	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	8	8	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	17	0	17	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MICALL2	79778	hgsc.bcm.edu	37	7	1484587	1484587	+	Silent	SNP	C	C	T	rs80020804	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	GCC	GCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	23	0	23	0	0
ZNF716	441234	hgsc.bcm.edu	37	7	57529562	57529562	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	2	2	0	0	0
KPNA7	402569	broad.mit.edu	37	7	98790650	98790650	+	Missense_Mutation	SNP	T	T	G	rs202149995		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
RELN	5649	broad.mit.edu;bcgsc.ca	37	7	103183277	103183277	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175290	143175290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143175367	143175367	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MLL3	58508	bcgsc.ca	37	7	151970951	151970951	+	Missense_Mutation	SNP	C	C	T	rs2951027	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
HR	55806	hgsc.bcm.edu	37	8	21983231	21983231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TNFRSF10A	8797	broad.mit.edu;bcgsc.ca	37	8	23060257	23060257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61766037	61766037	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
FAM83H	286077	hgsc.bcm.edu	37	8	144809268	144809268	+	Missense_Mutation	SNP	C	C	T	rs56148058	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	0	1	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	11	0	11	0	0
EPPK1	83481	bcgsc.ca	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	2	2	0	0	0
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu	37	8	144940551	144940551	+	Missense_Mutation	SNP	C	C	T	rs201579633		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	2	2	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	214719	214719	+	Silent	SNP	C	C	T	rs115610637	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	5	4	1	0	0
SPATA31D5P	347127	broad.mit.edu	37	9	84528612	84528614	+	RNA	DEL	TTG	TTG	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
FAM120AOS	158293	hgsc.bcm.edu	37	9	96214852	96214852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
SLC44A1	23446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	108120655	108120655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	35	27	8	0	0
PTGS1	5742	hgsc.bcm.edu;broad.mit.edu	37	9	125133492	125133497	+	In_Frame_Del	DEL	TCCTGC	TCCTGC	-	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	TCCTGC	TCCTGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126135831	126135831	+	Silent	SNP	T	T	C	rs7848449	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
ARSE	415	bcgsc.ca	37	X	2856155	2856155	+	Missense_Mutation	SNP	C	C	T	rs35143646	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TCEANC	170082	bcgsc.ca	37	X	13681638	13681638	+	Silent	SNP	C	C	T	rs5935649	byfrequency	TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TEX13A	56157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104463887	104463887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149678251	149678251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	14	0	14	0	0
FLNA	2316	hgsc.bcm.edu	37	X	153599572	153599572	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	1	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152084175	152084176	+	In_Frame_Ins	INS	-	-	TGCTGCTCGCGCCTCTCC	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
SLC30A1	7779	hgsc.bcm.edu	37	1	211749358	211749359	+	Nonsense_Mutation	INS	-	-	TAATTATTTCTACAAATGCTTTGCAGGGGTCAGGGAAACATGGATTC	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
FARP2	9855	broad.mit.edu	37	2	242433486	242433487	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
SON	6651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	34926429	34926430	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
FNDC3B	64778	hgsc.bcm.edu	37	3	172050900	172050901	+	Frame_Shift_Ins	INS	-	-	ACACTGGAGAGGATTTAACCTGTACTGTG	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
FZD1	8321	hgsc.bcm.edu	37	7	90894459	90894460	+	In_Frame_Ins	INS	-	-	CCG	rs139480179		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TTLL11	158135	hgsc.bcm.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	-	TGGCCT	rs201653732		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
TPSD1	23430	hgsc.bcm.edu	37	16	1306346	1306347	+	Missense_Mutation	DNP	CG	CG	GC	novel		TCGA-OR-A5JG-01A-11D-A29I-10	TCGA-OR-A5JG-10A-01D-A29L-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f116898f-b9c5-4d6c-9fec-7dc95857b8e9	037f76d1-c3d3-4513-a77b-2c2c8aea8963	0	0	0	0	0
