Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRDM16	63976	hgsc.bcm.edu	37	1	3329263	3329263	+	Silent	SNP	C	C	T	rs115226069	byfrequency;by1000genomes	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
MAD2L2	10459	hgsc.bcm.edu;bcgsc.ca	37	1	11737631	11737631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	78	78	0	0	0
MST1P2	11209	bcgsc.ca	37	1	16974458	16974458	+	RNA	SNP	G	G	C	rs57783259		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	5	5	0	0	0
ESPNP	284729	ucsc.edu	37	1	17034140	17034140	+	RNA	SNP	C	C	G	rs2988286		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
EPB41	2035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29424397	29424397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	16	5	11	0	0
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	60299091	60299091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	3	3	0	0	0
WLS	79971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68624824	68624824	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	145	56	89	0	0
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152323852	152323852	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
LOC100505666	0	bcgsc.ca	37	1	155025315	155025315	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
IER5	51278	hgsc.bcm.edu	37	1	181058313	181058313	+	Missense_Mutation	SNP	G	G	A	rs3747955		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	8	3	5	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186147583	186147583	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	1	1	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PRELP	5549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203452909	203452909	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	2	2	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
OR51B2	79345	bcgsc.ca	37	11	5344681	5344681	+	Missense_Mutation	SNP	G	G	A	rs11036815	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
CCDC88B	283234	hgsc.bcm.edu	37	11	64116890	64116890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	4	4	0	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
ADRBK1	156	broad.mit.edu;ucsc.edu	37	11	67046987	67046987	+	Silent	SNP	G	G	A	rs112675049	bycluster;byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
FAM86C2P	645332	broad.mit.edu	37	11	67560590	67560590	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	64	64	0	0	0
FGF19	9965	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	69514323	69514323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
ARHGEF17	9828	hgsc.bcm.edu	37	11	73020058	73020058	+	Silent	SNP	C	C	T	rs12272360	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	1	0	1	0	0
DLG2	1740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	84245704	84245704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
TRIM53AP	642569	bcgsc.ca	37	11	89730470	89730470	+	RNA	SNP	A	A	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118368752	118368752	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	1	1	0	0	0
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6426579	6426579	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PLEKHG6	55200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6426809	6426809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6427086	6427086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6427101	6427101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6427146	6427146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
SCNN1A	6337	ucsc.edu;bcgsc.ca	37	12	6464989	6464989	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	10	9	1	0	0
SSPN	8082	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26377283	26377283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	5	2	3	0	0
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32135056	32135056	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	3	3	0	0	0
APOF	319	broad.mit.edu	37	12	56755866	56755866	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PTPRQ	374462	broad.mit.edu	37	12	80936082	80936082	+	Silent	SNP	C	C	T	rs11114503	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
SLC5A8	160728	broad.mit.edu	37	12	101584302	101584302	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
CHPT1	56994	broad.mit.edu	37	12	102091784	102091784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	34	23	11	0	0
CORO1C	23603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	109055859	109055862	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	TCTT	TCTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
C12orf65	91574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123741386	123741386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	44	35	9	0	0
EFHA1	221154	hgsc.bcm.edu	37	13	22178258	22178258	+	Silent	SNP	C	C	T	rs9509812	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	21	2	19	0	0
ATP7B	540	bcgsc.ca	37	13	52544805	52544805	+	Missense_Mutation	SNP	C	C	G	rs1801244	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
TPTE2P3	220115	bcgsc.ca	37	13	53095301	53095301	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
CEP128	145508	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81259323	81259323	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
DYNC1H1	1778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102463457	102463457	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	10	10	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu	37	14	105416541	105416541	+	Missense_Mutation	SNP	C	C	A	rs201377031	alternate_allele	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
CHRFAM7A	89832	broad.mit.edu;bcgsc.ca	37	15	30659708	30659708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	4	4	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369947	65369947	+	Missense_Mutation	SNP	G	G	A	rs146917406		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
GOLGA6D	653643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	75586797	75586797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
RHBDF1	64285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	108431	108431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	36	22	14	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
ERI2	112479	broad.mit.edu	37	16	20810067	20810067	+	Missense_Mutation	SNP	T	T	C	rs3213646	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	4	4	0	0	0
ABCC11	85320	broad.mit.edu;bcgsc.ca	37	16	48209224	48209224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
CNOT1	23019	bcgsc.ca	37	16	58575489	58575489	+	Silent	SNP	G	G	A	rs11540994	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	43	43	0	0	0
CALB2	794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	71416647	71416647	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599659	88599659	+	Missense_Mutation	SNP	G	G	T	rs71395304	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	3	3	0	0	0
ABR	29	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	970425	970425	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
ARRB2	409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4619770	4619770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	7	7	0	0	0
SLC13A5	284111	bcgsc.ca	37	17	6594223	6594223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
UTP18	51096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	49354664	49354664	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	3	0	3	0	0
TRIM37	4591	broad.mit.edu	37	17	57139965	57139965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	14	14	0	0	0
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66519041	66519041	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	62	59	3	0	0
POTEC	388468	bcgsc.ca	37	18	14542654	14542654	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
POTEC	388468	bcgsc.ca	37	18	14542693	14542693	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28672247	28672247	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
DOHH	83475	hgsc.bcm.edu	37	19	3492318	3492318	+	Silent	SNP	G	G	C	rs78287632	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	17	7	10	0	0
CREB3L3	84699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4171861	4171861	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PLIN5	440503	hgsc.bcm.edu	37	19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	rs1062223	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	2	0	2	0	0
PPAN-P2RY11	692312	broad.mit.edu	37	19	10224474	10224474	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	17	16	1	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	28	0	28	0	0
PRX	57716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	40909675	40909676	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48601409	48601409	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
HRC	3270	hgsc.bcm.edu	37	19	49657751	49657751	+	Silent	SNP	A	A	G	rs142699460	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PRR12	57479	hgsc.bcm.edu	37	19	50100554	50100554	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	9	9	0	0	0
PNKP	11284	broad.mit.edu	37	19	50370408	50370408	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	41	39	2	0	0
TRAPPC12	51112	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3392328	3392328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	33	18	15	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21226106	21226106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36764534	36764534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	13	11	2	0	0
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84908502	84908502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133540078	133540078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
GTDC1	79712	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	144764748	144764748	+	Splice_Site	SNP	C	C	A	rs199607709	alternate_allele	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
XIRP2	129446	broad.mit.edu	37	2	168098406	168098406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241728660	241728660	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
SNED1	25992	hgsc.bcm.edu	37	2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	rs17440466	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	6	6	0	0	0
RNF24	11237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3954983	3954983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061817	26061817	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29626055	29626055	+	RNA	SNP	A	A	G	rs74373385	bycluster;byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	1	1	0	0	0
TPX2	22974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30388862	30388862	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	43	32	11	0	0
WISP2	8839	hgsc.bcm.edu	37	20	43348735	43348735	+	Silent	SNP	C	C	A	rs2296530	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	19	7	12	0	0
PABPC1L	80336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43550237	43550237	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
LAMA5	3911	broad.mit.edu	37	20	60895706	60895706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
HELZ2	85441	hgsc.bcm.edu	37	20	62194713	62194713	+	Missense_Mutation	SNP	A	A	C	rs3810486	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	8	4	4	0	0
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62839773	62839773	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
KRTAP13-1	140258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31768658	31768658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
SON	6651	ucsc.edu	37	21	34923319	34923319	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	12	12	0	0	0
DNMT3L	29947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45666395	45666395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
TTC28	23331	broad.mit.edu	37	22	28378384	28378384	+	Missense_Mutation	SNP	G	G	C	rs41278845	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	3	3	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PLA2G3	50487	bcgsc.ca	37	22	31532960	31532960	+	Missense_Mutation	SNP	C	C	T	rs2232183	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
A4GALT	53947	ucsc.edu;bcgsc.ca	37	22	43089055	43089055	+	Silent	SNP	G	G	C	rs6002904	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	4	4	0	0	0
ARFGAP3	26286	ucsc.edu;bcgsc.ca	37	22	43203137	43203137	+	Silent	SNP	C	C	T	rs738535	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	70	70	0	0	0
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44893294	44893294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	6	0	5	1	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	362	127	235	0	0
VIPR1	7433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42577654	42577654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
TKT	7086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53269001	53269001	+	Silent	SNP	G	G	A	rs140465934	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
RBP1	5947	bcgsc.ca	37	3	139258411	139258411	+	Silent	SNP	G	G	A	rs11549984		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	108	108	0	0	0
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142286929	142286929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	2	1	1	0	0
TMEM41A	90407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185212464	185212464	+	Missense_Mutation	SNP	G	G	A	rs151156113		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	85	77	8	0	0
MUC4	4585	bcgsc.ca	37	3	195509630	195509630	+	Missense_Mutation	SNP	C	C	G	rs61200084		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195509641	195509641	+	Missense_Mutation	SNP	A	A	G	rs28414759		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195513154	195513154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PROM1	8842	hgsc.bcm.edu;broad.mit.edu	37	4	15982079	15982079	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
AMTN	401138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71394907	71394907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537270	88537270	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
MEPE	56955	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88767172	88767172	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
CYP2U1	113612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	108853207	108853216	+	Frame_Shift_Del	DEL	GCGCGAGGCG	GCGCGAGGCG	-	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	GCGCGAGGCG	GCGCGAGGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
LOC645513	0	bcgsc.ca	37	4	120383016	120383016	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
FAM160A1	729830	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152498948	152498948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
GUCY1A3	2982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156618116	156618116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	3	3	0	0	0
STOX2	56977	bcgsc.ca	37	4	184931818	184931818	+	Silent	SNP	G	G	A	rs4861597	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633042	6633042	+	Silent	SNP	C	C	T	rs10062086	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	18	0	18	0	0
DAB2	1601	bcgsc.ca	37	5	39376885	39376906	+	Frame_Shift_Del	DEL	CGCGGGCACAGCAGGTGGCTGC	CGCGGGCACAGCAGGTGGCTGC	-	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	CGCGGGCACAGCAGGTGGCTGC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
C6	729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41143080	41143080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79028141	79028141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	5	3	2	0	0
E2F3	1871	broad.mit.edu	37	6	20483017	20483017	+	Silent	SNP	G	G	T	rs149378067	alternate_allele	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	7	7	0	0	0
HIST1H4B	8366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26027447	26027447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
HLA-B	3106	hgsc.bcm.edu	37	6	31324003	31324025	+	Frame_Shift_Del	DEL	TCGCCCTCCAGGTAGGCTCTCCG	TCGCCCTCCAGGTAGGCTCTCCG	-	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	TCGCCCTCCAGGTAGGCTCTCCG	TCGCCCTCCAGGTAGGCTCTCCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
MICA	100507436	broad.mit.edu	37	6	31379115	31379115	+	Missense_Mutation	SNP	G	G	A	rs1131896	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	100	98	1	0	1
LHFPL5	222662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35773835	35773835	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51920447	51920447	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
RIMS1	22999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	73000415	73000415	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
TSPYL4	23270	bcgsc.ca	37	6	116574989	116574989	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	8	8	0	0	0
DSE	29940	bcgsc.ca	37	6	116754523	116754523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
DSE	29940	bcgsc.ca	37	6	116754526	116754526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
HECA	51696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139498189	139498189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	12	7	5	0	0
TULP4	56995	bcgsc.ca	37	6	158870081	158870081	+	Silent	SNP	A	A	G	rs705956	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
SLC22A3	6581	hgsc.bcm.edu	37	6	160769828	160769828	+	Missense_Mutation	SNP	C	C	G	rs113898574		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	7	0	7	0	0
SDK1	221935	broad.mit.edu;bcgsc.ca	37	7	4153774	4153774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5353000	5353000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	9	9	0	0	0
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47408816	47408816	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	1	1	0	0	0
PRRT4	401399	hgsc.bcm.edu;mdanderson.org	37	7	127991345	127991345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142567581	142567581	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
NOS3	4846	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150704089	150704089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
MIR596	693181	bcgsc.ca	37	8	1765425	1765425	+	RNA	SNP	T	T	C	rs61388742	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
MYOM2	9172	ucsc.edu;bcgsc.ca	37	8	2037833	2037833	+	Silent	SNP	G	G	C	rs2294061	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
FDFT1	2222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11689040	11689040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	1112	337	773	0	2
MBOAT4	619373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	29996184	29996184	+	Missense_Mutation	SNP	C	C	T	rs140611326	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PAG1	55824	bcgsc.ca	37	8	81905397	81905397	+	Silent	SNP	A	A	G	rs2016465	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
SLC10A5	347051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82606283	82606283	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106814462	106814462	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	1	1	0	0	0
PKHD1L1	93035	bcgsc.ca	37	8	110448635	110448635	+	Missense_Mutation	SNP	A	A	G	rs10093885	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	4	0	4	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
SCRT1	83482	hgsc.bcm.edu	37	8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	rs7013127		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
RGP1	9827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35752652	35752652	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
LOC100132352	0	bcgsc.ca	37	9	68729191	68729191	+	RNA	SNP	A	A	G	rs76248351	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
SLC28A3	64078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86920229	86920229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
ASPN	54829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95233050	95233050	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	8	8	0	0	0
ASPN	54829	hgsc.bcm.edu	37	9	95237024	95237024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	1	1	0	0	0
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114246951	114246951	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
RNF183	138065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116060043	116060043	+	Missense_Mutation	SNP	G	G	A	rs146147048		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
CACNA1B	774	broad.mit.edu	37	9	140953592	140953592	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
CSF2RA	1438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	1413336	1413336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	2	2	0	0	0
DDX53	168400	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23018850	23018850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
GPR173	54328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53106284	53106284	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
AR	367	hgsc.bcm.edu	37	X	66765164	66765164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
YIPF6	286451	broad.mit.edu;bcgsc.ca	37	X	67718936	67718936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	35	35	0	0	0
LINC00238	440184	hgsc.bcm.edu	37	14	66953308	66953309	+	RNA	INS	-	-	TC	rs10569333		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
TMEM247	388946	hgsc.bcm.edu	37	2	46707846	46707847	+	In_Frame_Ins	INS	-	-	GAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGG	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
RGS7BP	401190	broad.mit.edu	37	5	63802481	63802482	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
RNU6-71	100873774	bcgsc.ca	37	6	56427095	56427096	+	RNA	INS	-	-	TGAGTGTTGAAA	rs79573569		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	0	0	0	0	0
