Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16577408	16577408	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	14	6	8	0	0
CROCCP2	84809	broad.mit.edu;bcgsc.ca	37	1	16956491	16956491	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	5	3	0	0	2
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
FOXD2	2306	hgsc.bcm.edu	37	1	47904000	47904000	+	Missense_Mutation	SNP	G	G	A	rs78469326	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
FOXD2	2306	hgsc.bcm.edu	37	1	47904909	47904909	+	Missense_Mutation	SNP	G	G	C	rs2405913		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
LEFTY1	10637	hgsc.bcm.edu	37	1	226075608	226075608	+	Silent	SNP	G	G	A	rs12753531	byfrequency;by1000genomes	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248756893	248756893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
OPTN	10133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13154589	13154589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	111	0	111	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219036	134219036	+	Silent	SNP	G	G	A	rs11817589	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012430	135012430	+	Silent	SNP	T	T	C	rs3008389	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	5	0	5	0	0
EFCAB4A	283229	hgsc.bcm.edu	37	11	830120	830120	+	Missense_Mutation	SNP	A	A	G	rs145926870		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
KRTAP5-1	387264	hgsc.bcm.edu	37	11	1606121	1606150	+	In_Frame_Del	DEL	CCACAGCCACCCTTGGATCCCCCACAAGAG	CCACAGCCACCCTTGGATCCCCCACAAGAG	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	CCACAGCCACCCTTGGATCCCCCACAAGAG	CCACAGCCACCCTTGGATCCCCCACAAGAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
KRTAP5-2	440021	bcgsc.ca	37	11	1619181	1619181	+	Silent	SNP	G	G	A	rs61869704		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
KRTAP5-2	440021	bcgsc.ca	37	11	1619184	1619184	+	Silent	SNP	G	G	A	rs36134435		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498648	71498648	+	Silent	SNP	A	A	G	rs12277291	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	1	0	1	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
STT3A	3703	bcgsc.ca	37	11	125479363	125479363	+	Silent	SNP	G	G	A	rs2241502	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	43	43	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	1377	840	536	1	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	130	130	0	0	0
TSPAN31	6302	hgsc.bcm.edu;bcgsc.ca	37	12	58140369	58140372	+	Frame_Shift_Del	DEL	CAGA	CAGA	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	CAGA	CAGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
EP400	57634	broad.mit.edu	37	12	132547094	132547096	+	In_Frame_Del	DEL	CAG	CAG	-	rs113304321	alternate_allele	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
FBRSL1	57666	hgsc.bcm.edu	37	12	133159733	133159733	+	Missense_Mutation	SNP	C	C	T	rs11550079		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	3	0	3	0	0
SAP18	10284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	21715115	21715115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	221	5	216	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	2	0	2	0	0
RPS6KL1	83694	bcgsc.ca	37	14	75386576	75386576	+	Missense_Mutation	SNP	G	G	A	rs2286913	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	3	3	0	0	0
IRF2BPL	64207	broad.mit.edu	37	14	77493762	77493767	+	In_Frame_Del	DEL	TGCTGC	TGCTGC	-	rs71125518	alternate_allele	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ISM2	145501	hgsc.bcm.edu	37	14	77942316	77942316	+	Silent	SNP	G	G	A	rs3742732	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ISM2	145501	hgsc.bcm.edu	37	14	77965094	77965094	+	Silent	SNP	G	G	A	rs12431905	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
JAG2	3714	hgsc.bcm.edu	37	14	105634121	105634121	+	Silent	SNP	G	G	A	rs113186535		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369882	65369882	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	11	11	0	0	0
TPSAB1	7177	hgsc.bcm.edu;broad.mit.edu	37	16	1292154	1292169	+	Frame_Shift_Del	DEL	CTGTGCCCAGCCCAAC	CTGTGCCCAGCCCAAC	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	CTGTGCCCAGCCCAAC	CTGTGCCCAGCCCAAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
LOC100132247	0	broad.mit.edu	37	16	22545360	22545360	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	92	92	0	0	0
LOC653786	0	broad.mit.edu	37	16	22579569	22579572	+	RNA	DEL	CATC	CATC	-	rs71860256		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
GGA2	23062	hgsc.bcm.edu	37	16	23521643	23521643	+	Silent	SNP	G	G	C	rs1071685	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890639	32890639	+	RNA	SNP	T	T	C	rs79284655	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	140	0	139	1	0
HAS3	3038	broad.mit.edu;bcgsc.ca	37	16	69148594	69148594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	42	6	36	0	0
KRTAP2-3	730755	hgsc.bcm.edu	37	17	39216019	39216019	+	Missense_Mutation	SNP	G	G	A	rs75503525		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
TXNDC2	84203	ucsc.edu	37	18	9887448	9887448	+	Silent	SNP	C	C	T	rs34819368		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
APC2	10297	hgsc.bcm.edu	37	19	1467684	1467684	+	Silent	SNP	A	A	C	rs265273	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
PLIN3	10226	bcgsc.ca	37	19	4852137	4852137	+	Silent	SNP	C	C	T	rs1055919	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	170	170	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399709	8399709	+	Silent	SNP	C	C	A	rs890852		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
OCEL1	79629	hgsc.bcm.edu	37	19	17337555	17337555	+	Silent	SNP	C	C	A	rs3745163	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	14	0	14	0	0
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17985536	17985536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183316	33183316	+	Silent	SNP	A	A	G	rs8109823		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ZNF285	26974	ucsc.edu	37	19	44891010	44891010	+	Missense_Mutation	SNP	G	G	C	rs150792548	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	1	1	0	0	0
ZNF285	26974	ucsc.edu	37	19	44891043	44891043	+	Missense_Mutation	SNP	G	G	T	rs77661661		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	1	1	0	0	0
GPR4	2828	broad.mit.edu	37	19	46094763	46094763	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	1	1	0	0	0
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	1	1	0	0	0
DKKL1	27120	bcgsc.ca	37	19	49869051	49869051	+	Missense_Mutation	SNP	T	T	G	rs2303759	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
SIGLEC16	400709	bcgsc.ca	37	19	50474960	50474960	+	RNA	SNP	C	C	G	rs201054007	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
CTU1	90353	hgsc.bcm.edu	37	19	51607507	51607507	+	Missense_Mutation	SNP	G	G	A	rs17855403		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	5	0	5	0	0
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52249666	52249666	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391826	3391826	+	Silent	SNP	C	C	T	rs11127423		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	2	0	2	0	0
AAK1	22848	broad.mit.edu	37	2	69746326	69746326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	7	6	1	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682226	106682226	+	Silent	SNP	T	T	C	rs4271786		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125262113	125262113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
SGOL2	151246	hgsc.bcm.edu;bcgsc.ca	37	2	201437310	201437310	+	Silent	SNP	G	G	T	rs202134341	alternate_allele	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	2	2	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	514	514	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	448	448	0	0	0
LOC643387	0	broad.mit.edu	37	2	239141221	239141221	+	RNA	SNP	G	G	C	rs11694487	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
SNRPB2	6629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	16712857	16712857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	56	29	27	0	0
FAM182A	284800	broad.mit.edu	37	20	26061818	26061818	+	RNA	SNP	G	G	C	rs112101451		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49510967	49510967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	10	3	7	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20779768	20779768	+	Missense_Mutation	SNP	G	G	C	rs874101	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
POM121L4P	266697	bcgsc.ca	37	22	21044663	21044663	+	RNA	SNP	G	G	C	rs10427829	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
TMPRSS6	164656	bcgsc.ca	37	22	37480797	37480797	+	Silent	SNP	C	C	T	rs2111833	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ATR	545	bcgsc.ca	37	3	142222284	142222284	+	Silent	SNP	A	A	G	rs2227931	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
IGSF10	285313	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151161115	151161115	+	Missense_Mutation	SNP	C	C	T	rs145507750		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195595405	195595405	+	Silent	SNP	G	G	A	rs1056726	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
DOK7	285489	broad.mit.edu	37	4	3494664	3494664	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
GABRA2	2555	broad.mit.edu;bcgsc.ca	37	4	46252483	46252483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
UGT2B17	7367	ucsc.edu;bcgsc.ca	37	4	69433714	69433714	+	Silent	SNP	C	C	T	rs34664906		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
EREG	2069	bcgsc.ca	37	4	75248434	75248434	+	Silent	SNP	A	A	G	rs2367707	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79351450	79351450	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537114	88537114	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
PRDM5	11107	bcgsc.ca	37	4	121738049	121738049	+	Silent	SNP	T	T	C	rs343192	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	1	1	0	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
GUSBP1	728411	broad.mit.edu	37	5	21502020	21502021	+	RNA	DEL	AG	AG	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
PIK3R1	5295	bcgsc.ca	37	5	67588148	67588148	+	Missense_Mutation	SNP	G	G	A	rs3730089	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	14	14	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	5	0	5	0	0
OR2H2	7932	bcgsc.ca	37	6	29555778	29555778	+	Silent	SNP	A	A	G	rs2235698	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
HLA-A	3105	bcgsc.ca	37	6	29911925	29911925	+	Missense_Mutation	SNP	C	C	T	rs77235917		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	9	9	0	0	0
TNXB	7148	broad.mit.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
HLA-DQA1	3117	bcgsc.ca	37	6	32609126	32609126	+	Missense_Mutation	SNP	T	T	C	rs1071630	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	3	3	0	0	0
NFKBIE	4794	hgsc.bcm.edu	37	6	44233216	44233216	+	Missense_Mutation	SNP	G	G	C	rs28362857	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ENPP5	59084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	46129455	46129455	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	14	0	14	0	0
STXBP5	134957	broad.mit.edu;bcgsc.ca	37	6	147525733	147525733	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	1	0	1	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
EIF3B	8662	hgsc.bcm.edu	37	7	2394991	2394991	+	Silent	SNP	C	C	T	rs11551167	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	36	0	36	0	0
VWDE	221806	bcgsc.ca	37	7	12433347	12433347	+	Missense_Mutation	SNP	C	C	T	rs17165995	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	1	1	0	0	0
HOXA10-HOXA9	0	ucsc.edu;bcgsc.ca	37	7	27219361	27219361	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	43483926	43483943	+	In_Frame_Del	DEL	AGAGTCCTCTGAGAGCTG	AGAGTCCTCTGAGAGCTG	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	AGAGTCCTCTGAGAGCTG	AGAGTCCTCTGAGAGCTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
LOC728377	0	bcgsc.ca	37	7	143983020	143983020	+	RNA	SNP	G	G	A	rs79434082		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
DLC1	10395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	12957772	12957772	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	9	6	3	0	0
MTDH	92140	hgsc.bcm.edu	37	8	98656966	98656966	+	Missense_Mutation	SNP	G	G	T	rs17854373	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	7	4	3	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139729081	139729081	+	Missense_Mutation	SNP	C	C	T	rs144653941		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	2	0	2	0	0
SCRT1	83482	hgsc.bcm.edu	37	8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	rs7013127		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	3	0	3	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	2	1	1	0	0
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134993856	134993856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ATP11C	286410	ucsc.edu;bcgsc.ca	37	X	138864822	138864822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	4	4	0	0	0
GABRE	2564	bcgsc.ca	37	X	151138179	151138179	+	Missense_Mutation	SNP	A	A	C	rs1139916	byfrequency	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
CD24	100133941	bcgsc.ca	37	Y	21154569	21154569	+	Silent	SNP	A	A	G	rs17855271		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
POLG	5428	hgsc.bcm.edu;broad.mit.edu	37	15	89876827	89876828	+	In_Frame_Ins	INS	-	-	TGCTGC	rs41550117	bycluster;alternate_allele	TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77356310	77356311	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327915	16327916	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
HGC6.3	0	broad.mit.edu	37	6	168377696	168377697	+	RNA	INS	-	-	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
MEPCE	56257	broad.mit.edu	37	7	100028067	100028068	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5JZ-01A-11D-A29I-10	TCGA-OR-A5JZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c8fb3b22-0789-4494-b5e0-09d61b0457b8	6225521c-473e-4ee7-946a-d2daec7c45de	0	0	0	0	0
