Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
AHDC1	27245	hgsc.bcm.edu	37	1	27877423	27877423	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	16	1	15	0	0
EPHA10	284656	hgsc.bcm.edu	37	1	38227246	38227246	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
DHCR24	1718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	55349290	55349290	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
SRSF11	9295	broad.mit.edu	37	1	70694110	70694110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
INSRR	3645	broad.mit.edu;bcgsc.ca	37	1	156810733	156810733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
FCRL5	83416	bcgsc.ca	37	1	157514091	157514091	+	Missense_Mutation	SNP	C	C	T	rs12036228	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	3	0	3	0	0
RGS21	431704	hgsc.bcm.edu	37	1	192335239	192335239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
BPNT1	10380	ucsc.edu	37	1	220231275	220231275	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	77	76	1	0	0
IDI1	3422	hgsc.bcm.edu	37	10	1094906	1094906	+	Missense_Mutation	SNP	C	C	T	rs7091756	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	2	0	2	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
RBM20	282996	hgsc.bcm.edu	37	10	112404302	112404302	+	Silent	SNP	G	G	A	rs35141404	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
FGFR2	2263	broad.mit.edu	37	10	123246935	123246935	+	Missense_Mutation	SNP	G	G	A	rs113014479		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
FNBP4	23360	bcgsc.ca	37	11	47745589	47745589	+	Missense_Mutation	SNP	T	T	C	rs34242224	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	14	0	14	0	0
FGF4	2249	hgsc.bcm.edu	37	11	69589556	69589556	+	Silent	SNP	G	G	A	rs11600280	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
KCTD14	65987	ucsc.edu	37	11	77734209	77734209	+	Silent	SNP	T	T	C	rs11237362	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
CASP5	838	hgsc.bcm.edu;broad.mit.edu	37	11	104872901	104872901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
ENO2	2026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7025042	7025042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	15	9	6	0	0
TAS2R42	353164	bcgsc.ca	37	12	11338970	11338970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
MGST1	4257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	16516930	16516933	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	TCTT	TCTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
LHX5	64211	hgsc.bcm.edu	37	12	113901232	113901232	+	Silent	SNP	T	T	C	rs202131487		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
FBRSL1	57666	hgsc.bcm.edu	37	12	133159733	133159733	+	Missense_Mutation	SNP	C	C	T	rs11550079		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32783790	32783790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	10	10	0	0	0
DHRS4L1	728635	broad.mit.edu	37	14	24513024	24513024	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67578631	67578631	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
IRF2BPL	64207	broad.mit.edu	37	14	77493762	77493767	+	In_Frame_Del	DEL	TGCTGC	TGCTGC	-	rs71125518	alternate_allele	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
EXOC3L4	91828	hgsc.bcm.edu	37	14	103568729	103568729	+	Silent	SNP	A	A	G	rs10142200	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
WHAMMP2	440253	ucsc.edu	37	15	28991148	28991148	+	RNA	SNP	G	G	C	rs200178304		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
EMC7	56851	broad.mit.edu	37	15	34388183	34388183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	25	25	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414119	63414119	+	Missense_Mutation	SNP	G	G	A	rs139879323		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	3	0	3	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2154573	2154573	+	Missense_Mutation	SNP	A	A	C	rs201238819		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	15	4	11	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2156447	2156447	+	Silent	SNP	G	G	A	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	8	8	0	0	0
CCP110	9738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	19547801	19547801	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
SMG1P1	641298	bcgsc.ca	37	16	22491541	22491541	+	RNA	SNP	G	G	T	rs808847		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
HIRIP3	8479	broad.mit.edu	37	16	30005028	30005028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	40	36	4	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
THAP11	57215	hgsc.bcm.edu	37	16	67876806	67876829	+	In_Frame_Del	DEL	CAGCAGCAGCAGCAGCAACAGCAG	CAGCAGCAGCAGCAGCAACAGCAG	-	rs111586870	byfrequency;alternate_allele	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	CAGCAGCAGCAGCAGCAACAGCAG	CAGCAGCAGCAGCAGCAACAGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095558	90095558	+	Missense_Mutation	SNP	C	C	T	rs76646627		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21904204	21904204	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21906729	21906729	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
TBC1D3P1-DHX40P1	653645	broad.mit.edu;bcgsc.ca	37	17	58066651	58066651	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	10	0	10	0	0
LLGL2	3993	bcgsc.ca	37	17	73565171	73565171	+	Missense_Mutation	SNP	T	T	C	rs1671021	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	7	7	0	0	0
POTEC	388468	broad.mit.edu	37	18	14542740	14542740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
LOXHD1	125336	broad.mit.edu;bcgsc.ca	37	18	44149474	44149474	+	Silent	SNP	G	G	A	rs2086005	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	0	1	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
ATP8B3	148229	hgsc.bcm.edu;bcgsc.ca	37	19	1806115	1806115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	2	2	0	0	0
PLIN5	440503	broad.mit.edu	37	19	4525688	4525688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
RDH8	50700	broad.mit.edu	37	19	10132072	10132072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
ANKLE1	126549	hgsc.bcm.edu	37	19	17392779	17392779	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183352	33183352	+	Silent	SNP	G	G	C	rs61732600	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
IGFLR1	79713	hgsc.bcm.edu	37	19	36231288	36231288	+	Missense_Mutation	SNP	C	C	T	rs140952221	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
APOE	348	hgsc.bcm.edu	37	19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	rs429358	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1356	2	1354	0	0
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
ZNF814	730051	bcgsc.ca	37	19	58385788	58385788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	2	2	0	0	0
ZSCAN1	284312	hgsc.bcm.edu	37	19	58549354	58549354	+	Silent	SNP	C	C	T	rs113374422	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	1	0	0	0
RMND5A	64795	broad.mit.edu	37	2	86997248	86997248	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
SMPD4	55627	ucsc.edu	37	2	130910188	130910188	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	39	27	12	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	0	1	0	0
FRG1B	284802	bcgsc.ca	37	20	29623164	29623164	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	69	69	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623179	29623179	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	64	64	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	43	39	4	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444569	61444569	+	Silent	SNP	A	A	G	rs3204348	byfrequency;by1000genomes	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	169	156	13	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	129	116	13	0	0
DIDO1	11083	broad.mit.edu;bcgsc.ca	37	20	61541101	61541101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	18	17	1	0	0
CHRNA4	1137	hgsc.bcm.edu	37	20	61992467	61992467	+	Silent	SNP	C	C	T	rs79739740		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	1	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	1	0	0	0
KRTAP10-5	386680	ucsc.edu;bcgsc.ca	37	21	46000064	46000064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
PI4KAP2	375133	broad.mit.edu	37	22	21846329	21846329	+	RNA	DEL	C	C	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu;ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	18	18	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885599	29885604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
TMPRSS6	164656	broad.mit.edu;bcgsc.ca	37	22	37462232	37462232	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	3	3	0	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45255679	45255679	+	Missense_Mutation	SNP	G	G	A	rs147192731	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	1	0	0	0
C22orf26	55267	hgsc.bcm.edu	37	22	46449891	46449891	+	Missense_Mutation	SNP	G	G	A	rs12159707		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
TMEM42	131616	hgsc.bcm.edu	37	3	44903434	44903434	+	Silent	SNP	G	G	C	rs2292181	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	6	0	6	0	0
MST1	4485	bcgsc.ca	37	3	49725034	49725034	+	Missense_Mutation	SNP	T	T	A	rs142964215	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	2	2	0	0	0
MST1	4485	bcgsc.ca	37	3	49725038	49725038	+	Silent	SNP	G	G	C	rs116125078	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	1	0	0	0
MST1	4485	bcgsc.ca	37	3	49725086	49725086	+	Silent	SNP	G	G	A	rs201833731	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	3	3	0	0	0
ZMYND10	51364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	50379278	50379278	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	2	2	0	0	0
PDHB	5162	broad.mit.edu	37	3	58413810	58413810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	77	77	0	0	0
MORC1	27136	broad.mit.edu	37	3	108819313	108819313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
EIF2A	83939	ucsc.edu;bcgsc.ca	37	3	150280445	150280445	+	Missense_Mutation	SNP	C	C	G	rs1132979	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	1	0	0	0
RTP1	132112	broad.mit.edu	37	3	186917498	186917498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195506692	195506692	+	Missense_Mutation	SNP	C	C	G	rs142466346	alternate_allele	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195506704	195506704	+	Missense_Mutation	SNP	T	T	C	rs201760283		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195506712	195506712	+	Silent	SNP	A	A	T	rs199930420		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
RBPJ	3516	bcgsc.ca	37	4	26417136	26417136	+	Silent	SNP	T	T	C	rs2270226	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	1	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536550	88536550	+	Silent	SNP	T	T	C	rs145589857		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
DAB2	1601	broad.mit.edu	37	5	39376905	39376905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	15	13	1	0	1
JAKMIP2	9832	broad.mit.edu	37	5	147011063	147011064	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161277848	161277848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
LOC202181	0	broad.mit.edu	37	5	177099140	177099140	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	0	1	0	0
ZFP62	643836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180275938	180275938	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	1	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
PNPLA1	285848	bcgsc.ca	37	6	36275458	36275458	+	Missense_Mutation	SNP	T	T	C	rs4713956	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	2	0	2	0	0
RIMS1	22999	broad.mit.edu;bcgsc.ca	37	6	73100417	73100417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824956	20824956	+	Silent	SNP	C	C	G	rs201180283		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	0	1	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	9	0	9	0	0
GLI3	2737	hgsc.bcm.edu	37	7	42005678	42005678	+	Missense_Mutation	SNP	G	G	A	rs929387	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
NOM1	64434	hgsc.bcm.edu	37	7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	rs6969990	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	0	1	0	0
PCMTD1	115294	bcgsc.ca	37	8	52733121	52733121	+	Silent	SNP	G	G	A	rs147382324	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	15	15	0	0	0
PCMTD1	115294	bcgsc.ca	37	8	52733143	52733143	+	Missense_Mutation	SNP	A	A	G	rs111785933		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	4	4	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	72967768	72967768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	0	1	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
CYP11B1	1584	bcgsc.ca	37	8	143957192	143957192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	3005	1344	1658	1	2
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	0	1	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832928	5832928	+	Missense_Mutation	SNP	G	G	C	rs13283149	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
PTGER4P2-CDK2AP2P2	442421	bcgsc.ca	37	9	66499739	66499739	+	RNA	SNP	G	G	A	rs199935942		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
GADD45G	10912	hgsc.bcm.edu;bcgsc.ca	37	9	92220669	92220669	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
PPAPDC3	84814	ucsc.edu;bcgsc.ca	37	9	134183503	134183503	+	Silent	SNP	T	T	C	rs2986606	byfrequency	TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	1	0	1	0	0
tRNA-Ala	0	bcgsc.ca	37	MT	5641	5641	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	16706	14299	2401	2	4
CYTB	0	broad.mit.edu	37	MT	15297	15297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	25048	12216	12824	4	4
USP26	83844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132159761	132159761	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
CD24	100133941	bcgsc.ca	37	Y	21154569	21154569	+	Silent	SNP	A	A	G	rs17855271		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
CD24	100133941	bcgsc.ca;mdanderson.org	37	Y	21154603	21154603	+	RNA	SNP	A	A	C	rs79788321		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
PAQR4	124222	broad.mit.edu	37	16	3019781	3019782	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-OR-A5K1-01A-11D-A29I-10	TCGA-OR-A5K1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	06ecca59-8149-4951-a159-c0a2f7a82b3b	e201d5c0-195f-4c38-8093-ec220ce49d0b	0	0	0	0	0
