Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
AGMAT	79814	hgsc.bcm.edu	37	1	15911349	15911349	+	Silent	SNP	G	G	A	rs3737705	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
RPS6KA1	6195	hgsc.bcm.edu	37	1	26856462	26856462	+	Silent	SNP	T	T	G	rs11800553	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
CYP4Z2P	163720	bcgsc.ca	37	1	47325354	47325354	+	RNA	SNP	G	G	A	rs4660360		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
L1TD1	54596	hgsc.bcm.edu	37	1	62675664	62675664	+	Silent	SNP	G	G	A	rs200931139		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
L1TD1	54596	ucsc.edu	37	1	62675673	62675673	+	Missense_Mutation	SNP	G	G	T	rs200789118		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160105320	160105320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
C1orf198	84886	broad.mit.edu	37	1	231004230	231004230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SH3BP5L	80851	hgsc.bcm.edu	37	1	249106348	249106348	+	Silent	SNP	G	G	C	rs202116012		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
PTCHD3	374308	hgsc.bcm.edu;broad.mit.edu	37	10	27702894	27702923	+	In_Frame_Del	DEL	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	-	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
GPR26	2849	hgsc.bcm.edu	37	10	125426253	125426253	+	Silent	SNP	C	C	T	rs62640898	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
PTDSS2	81490	broad.mit.edu	37	11	489952	489952	+	Silent	SNP	C	C	T	rs150531471	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
NAP1L4	4676	broad.mit.edu	37	11	2979678	2979678	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
IGSF22	283284	broad.mit.edu	37	11	18728650	18728650	+	Missense_Mutation	SNP	T	T	C	rs2289965	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
KRTAP5-10	387273	hgsc.bcm.edu	37	11	71276876	71276876	+	Silent	SNP	A	A	G	rs12788123		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
IQSEC3	440073	bcgsc.ca	37	12	274647	274647	+	Silent	SNP	T	T	C	rs4980859	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ZNF705A	440077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8329841	8329841	+	Missense_Mutation	SNP	C	C	T	rs145286690	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
KLRC2	3822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10584764	10584764	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
PIP4K2C	79837	bcgsc.ca	37	12	57985204	57985204	+	Silent	SNP	C	C	T	rs11537654	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SETD1B	23067	broad.mit.edu	37	12	122243905	122243905	+	Silent	SNP	C	C	T	rs1168666	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SETD1B	23067	broad.mit.edu	37	12	122248078	122248078	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
FBRSL1	57666	hgsc.bcm.edu	37	12	133159733	133159733	+	Missense_Mutation	SNP	C	C	T	rs11550079		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SPERT	220082	hgsc.bcm.edu	37	13	46288017	46288017	+	Nonsense_Mutation	SNP	C	C	A	rs79707842		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
FRMD6	122786	bcgsc.ca	37	14	52186966	52186966	+	Silent	SNP	G	G	A	rs2277495	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
EXOC3L4	91828	hgsc.bcm.edu	37	14	103568729	103568729	+	Silent	SNP	A	A	G	rs10142200	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ARHGAP11A	9824	broad.mit.edu;bcgsc.ca	37	15	32921898	32921898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
LTK	4058	hgsc.bcm.edu	37	15	41803754	41803754	+	Missense_Mutation	SNP	G	G	A	rs55739813	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SMAD6	4091	hgsc.bcm.edu	37	15	66995915	66995915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SKOR1	390598	hgsc.bcm.edu	37	15	68120014	68120014	+	Silent	SNP	C	C	T	rs62015251		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
MYO9A	4649	bcgsc.ca	37	15	72193564	72193564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
LOC645752	0	broad.mit.edu	37	15	78217296	78217296	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ZNF710	374655	broad.mit.edu	37	15	90611149	90611149	+	Silent	SNP	T	T	G	rs201433675		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
FAM173A	65990	hgsc.bcm.edu	37	16	771286	771286	+	Silent	SNP	C	C	T	rs11540049	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
HAGHL	84264	hgsc.bcm.edu	37	16	779402	779402	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
MRPS34	65993	hgsc.bcm.edu	37	16	1822947	1822947	+	Silent	SNP	C	C	G	rs1076695		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SRRM2	23524	bcgsc.ca	37	16	2812939	2812939	+	Missense_Mutation	SNP	C	C	A	rs2240140	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
USP31	57478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	23079691	23079691	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
NLGN2	57555	hgsc.bcm.edu	37	17	7320874	7320874	+	Missense_Mutation	SNP	C	C	T	rs62061174		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
OMG	4974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29622398	29622398	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346595	39346595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
RNF43	54894	ucsc.edu;bcgsc.ca	37	17	56492800	56492800	+	Missense_Mutation	SNP	T	T	C	rs3744093	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
TMEM200C	645369	hgsc.bcm.edu	37	18	5890571	5890571	+	Missense_Mutation	SNP	T	T	C	rs7506026		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ZNF516	9658	hgsc.bcm.edu	37	18	74153712	74153712	+	Silent	SNP	G	G	A	rs113225589		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
NCLN	56926	hgsc.bcm.edu	37	19	3204732	3204732	+	Silent	SNP	C	C	T	rs61745459	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
TNFSF9	8744	hgsc.bcm.edu	37	19	6531171	6531171	+	Missense_Mutation	SNP	G	G	A	rs2234174		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
MUC16	94025	bcgsc.ca	37	19	9065632	9065632	+	Missense_Mutation	SNP	T	T	C	rs1867691	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
CRTC1	23373	broad.mit.edu	37	19	18794517	18794517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
CILP2	148113	hgsc.bcm.edu	37	19	19651140	19651140	+	Silent	SNP	A	A	G	rs4808970	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SIPA1L3	23094	hgsc.bcm.edu	37	19	38684261	38684261	+	Missense_Mutation	SNP	G	G	C	rs61735490		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
DYRK1B	9149	hgsc.bcm.edu	37	19	40317436	40317436	+	Silent	SNP	G	G	A	rs201098298		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
VN1R4	317703	bcgsc.ca	37	19	53770764	53770764	+	Missense_Mutation	SNP	G	G	A	rs74429916		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ZNF845	91664	broad.mit.edu	37	19	53854397	53854397	+	Missense_Mutation	SNP	G	G	C	rs10415799	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
TMEM247	388946	bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
RPIA	22934	hgsc.bcm.edu	37	2	88991242	88991242	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
WASH2P	375260	broad.mit.edu	37	2	114353449	114353449	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	133014678	133014678	+	RNA	SNP	A	A	G	rs72869462	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	133014703	133014703	+	RNA	SNP	T	T	C	rs72869464	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
TNS1	7145	bcgsc.ca	37	2	218669225	218669225	+	Missense_Mutation	SNP	T	T	C	rs61741262	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SPEG	10290	hgsc.bcm.edu	37	2	220348518	220348518	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233347170	233347170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SLC23A2	9962	broad.mit.edu;bcgsc.ca	37	20	4893560	4893560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26062225	26062234	+	RNA	DEL	TGCAGACCAG	TGCAGACCAG	-	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
CHEK2	11200	broad.mit.edu	37	22	29091841	29091841	+	Silent	SNP	G	G	A	rs79357544		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
TMEM42	131616	hgsc.bcm.edu	37	3	44903434	44903434	+	Silent	SNP	G	G	C	rs2292181	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SACM1L	22908	hgsc.bcm.edu;bcgsc.ca	37	3	45751105	45751105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
VWA5B2	90113	broad.mit.edu;bcgsc.ca	37	3	183951431	183951431	+	Missense_Mutation	SNP	C	C	T	rs902417	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
MUC4	4585	hgsc.bcm.edu;mdanderson.org	37	3	195508187	195508187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
LOC220729	0	broad.mit.edu;bcgsc.ca	37	3	197348646	197348646	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
TNIP2	79155	hgsc.bcm.edu	37	4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	rs74548850	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
WDR1	9948	bcgsc.ca	37	4	10099340	10099340	+	Missense_Mutation	SNP	T	T	C	rs13441	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SLIT2	9353	broad.mit.edu	37	4	20525746	20525746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SOD3	6649	hgsc.bcm.edu	37	4	24801354	24801354	+	Silent	SNP	C	C	T	rs8192291	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662309	77662309	+	Silent	SNP	C	C	T	rs344143	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
FAM170A	340069	bcgsc.ca	37	5	118969960	118969960	+	Missense_Mutation	SNP	C	C	T	rs328694	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
FBN2	2201	broad.mit.edu	37	5	127727722	127727722	+	Missense_Mutation	SNP	C	C	G	rs34450503	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
HLA-A	3105	hgsc.bcm.edu	37	6	29911239	29911261	+	Frame_Shift_Del	DEL	TTGAGAGCCTACCTGGATGGCAC	TTGAGAGCCTACCTGGATGGCAC	-	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	TTGAGAGCCTACCTGGATGGCAC	TTGAGAGCCTACCTGGATGGCAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
HLA-B	3106	hgsc.bcm.edu	37	6	31324599	31324599	+	Missense_Mutation	SNP	T	T	G	rs1050538	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
GPR111	222611	broad.mit.edu	37	6	47624239	47624239	+	Missense_Mutation	SNP	A	A	G	rs1485784	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
KCNQ5	56479	hgsc.bcm.edu	37	6	73332121	73332121	+	Silent	SNP	C	C	T	rs34821312	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
MTHFD1L	25902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151293139	151293139	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SP8	221833	broad.mit.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
PON1	5444	bcgsc.ca	37	7	94937446	94937446	+	Missense_Mutation	SNP	T	T	C	rs662	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SLC26A3	1811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107408290	107408290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
CYP7B1	9420	broad.mit.edu	37	8	65537031	65537031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
E2F5	1875	hgsc.bcm.edu	37	8	86089787	86089787	+	Silent	SNP	C	C	G	rs12926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
EPPK1	83481	bcgsc.ca	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
MLLT3	4300	broad.mit.edu	37	9	20414340	20414340	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
DMRTA1	63951	hgsc.bcm.edu	37	9	22447523	22447523	+	Silent	SNP	C	C	T	rs34336274	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
AQP7	364	ucsc.edu	37	9	33385287	33385287	+	Missense_Mutation	SNP	T	T	C	rs74557595		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SH2D3C	10044	broad.mit.edu	37	9	130504196	130504196	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
C9orf172	389813	hgsc.bcm.edu	37	9	139740630	139740630	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
DCAF8L2	347442	hgsc.bcm.edu	37	X	27765408	27765408	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
FAM47C	442444	broad.mit.edu	37	X	37028425	37028425	+	Missense_Mutation	SNP	A	A	G	rs145580328	byfrequency	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SRPX	8406	broad.mit.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	GCA	-	rs35523939	alternate_allele	TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
CCDC120	90060	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48921925	48921925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
MECP2	4204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153295874	153295874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
JPH4	84502	broad.mit.edu	37	14	24044983	24044984	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
C16orf3	750	hgsc.bcm.edu	37	16	90095597	90095598	+	In_Frame_Ins	INS	-	-	GGGGCAGCCTACGGGGCAGGCTGC	rs71137702		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
ATXN1	6310	hgsc.bcm.edu	37	6	16327909	16327910	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
FZD1	8321	hgsc.bcm.edu	37	7	90894459	90894460	+	In_Frame_Ins	INS	-	-	CCG	rs139480179		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504670	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-OR-A5KQ-01A-11D-A30A-10	TCGA-OR-A5KQ-10A-01D-A30A-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	71ee860b-0b75-498c-a470-f1022b5155e0	c748e192-64b2-4316-bf62-5f40129b4743	0	0	0	0	0
