Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HES3	390992	hgsc.bcm.edu	37	1	6305292	6305292	+	Missense_Mutation	SNP	C	C	A	rs61760836		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
CNR2	1269	bcgsc.ca	37	1	24201357	24201357	+	Silent	SNP	A	A	G	rs4649124	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
SFN	2810	broad.mit.edu	37	1	27189835	27189835	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
PRPF38A	84950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	52878204	52878204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	50	47	3	0	0
CTBS	1486	broad.mit.edu	37	1	85039999	85040007	+	In_Frame_Del	DEL	GCAGCGCCA	GCAGCGCCA	-	rs142534762	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
SPRR3	6707	ucsc.edu	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214816610	214816610	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	1	0	1	0	0
BPNT1	10380	ucsc.edu	37	1	220231263	220231263	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	5389	5126	195	53	15
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	1	1	0	0	0
RBM34	23029	bcgsc.ca	37	1	235324580	235324580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	237811822	237811822	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
ABI1	10006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	27040664	27040664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	12	11	1	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75407622	75407622	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
ARMS2	387715	bcgsc.ca	37	10	124214448	124214448	+	Missense_Mutation	SNP	G	G	T	rs10490924	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	1	0	1	0	0
TMEM151A	256472	hgsc.bcm.edu	37	11	66062454	66062454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	8	4	4	0	0
SORL1	6653	ucsc.edu;bcgsc.ca	37	11	121429444	121429444	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
ETV6	2120	bcgsc.ca	37	12	11992168	11992168	+	Silent	SNP	G	G	A	rs11611479	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	4	4	0	0	0
C2CD5	9847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	22635541	22635541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	2	1	1	0	0
KANSL2	54934	broad.mit.edu	37	12	49054319	49054319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	40	40	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	642	442	200	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	1	1	0	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
KSR2	283455	bcgsc.ca	37	12	117993064	117993064	+	Silent	SNP	C	C	T	rs7955803	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
RIMBP2	23504	hgsc.bcm.edu	37	12	130921471	130921471	+	Silent	SNP	T	T	C	rs2292663	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	3	0	3	0	0
EFHA1	221154	hgsc.bcm.edu	37	13	22178258	22178258	+	Silent	SNP	C	C	T	rs9509812	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	11	0	11	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	19	19	0	0	0
LRRC16B	90668	broad.mit.edu	37	14	24527267	24527267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	2	0	2	0	0
PHGR1	644844	hgsc.bcm.edu	37	15	40648372	40648372	+	Silent	SNP	T	T	C	rs12900982	byfrequency;by1000genomes	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
WDR72	256764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	53998158	53998158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
PARP6	56965	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	72543246	72543246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	20	9	11	0	0
UBL7	84993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74740854	74740854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	89	44	45	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
ALG1	56052	bcgsc.ca	37	16	5132636	5132636	+	Silent	SNP	C	C	T	rs1047732	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	30	30	0	0	0
NUTF2	10204	broad.mit.edu	37	16	67899046	67899046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	142	140	2	0	0
NECAB2	54550	bcgsc.ca	37	16	84035446	84035446	+	Missense_Mutation	SNP	C	C	G	rs2271298	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	69	69	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599659	88599659	+	Missense_Mutation	SNP	G	G	T	rs71395304	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	35	20	15	0	0
KIAA0753	9851	broad.mit.edu	37	17	6493296	6493296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	5	5	0	0	0
SLC2A4	6517	broad.mit.edu	37	17	7187306	7187306	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	60	60	0	0	0
RNF222	643904	hgsc.bcm.edu	37	17	8296383	8296383	+	Missense_Mutation	SNP	C	C	T	rs12601362	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
NDEL1	81565	ucsc.edu	37	17	8354151	8354151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	29	28	1	0	0
ARHGAP44	9912	broad.mit.edu	37	17	12852499	12852499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	15	4	11	0	0
PSMD3	5709	broad.mit.edu	37	17	38144959	38144959	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	117	117	0	0	0
LLGL2	3993	broad.mit.edu	37	17	73565071	73565071	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	2	2	0	0	0
LINC00482	284185	broad.mit.edu	37	17	79278357	79278357	+	RNA	SNP	C	C	G	rs11871509	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
SMCHD1	23347	bcgsc.ca	37	18	2688477	2688477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	1	1	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56940307	56940307	+	Missense_Mutation	SNP	G	G	T	rs2271733	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	36	19	17	0	0
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1488279	1488279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
JSRP1	126306	hgsc.bcm.edu	37	19	2253732	2253732	+	Missense_Mutation	SNP	G	G	A	rs74521370		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	8	2	6	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8400651	8400651	+	Silent	SNP	C	C	G	rs11669559	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	1	1	0	0	0
ACP5	54	broad.mit.edu	37	19	11687251	11687251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	4	4	0	0	0
FBXW9	84261	broad.mit.edu	37	19	12800811	12800813	+	In_Frame_Del	DEL	CCA	CCA	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
TSHZ3	57616	broad.mit.edu	37	19	31770238	31770240	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
LTBP4	8425	broad.mit.edu	37	19	41119074	41119074	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	18	17	1	0	0
DMWD	1762	broad.mit.edu	37	19	46289402	46289402	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	rs1804994	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	25	0	25	0	0
TPRX1	284355	bcgsc.ca	37	19	48305555	48305555	+	Missense_Mutation	SNP	G	G	A	rs147380237		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
KCNA7	3743	hgsc.bcm.edu	37	19	49575618	49575618	+	Silent	SNP	A	A	G	rs71352730	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
LRRC4B	94030	hgsc.bcm.edu	37	19	51021057	51021057	+	Missense_Mutation	SNP	A	A	G	rs61751957		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	10	7	3	0	0
CDC42EP5	148170	hgsc.bcm.edu	37	19	54976403	54976403	+	Missense_Mutation	SNP	G	G	A	rs78611575		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	2	1	1	0	0
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	3	1	2	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
MYT1L	23040	bcgsc.ca	37	2	1805503	1805503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
NTSR2	23620	hgsc.bcm.edu	37	2	11809650	11809650	+	Silent	SNP	C	C	G	rs199659575	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
TMEM247	388946	bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
TMEM247	388946	hgsc.bcm.edu	37	2	46707887	46707887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	3	3	0	0	0
TEKT4	150483	ucsc.edu	37	2	95542377	95542377	+	Missense_Mutation	SNP	C	C	T	rs72817671	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
UBR3	130507	broad.mit.edu;bcgsc.ca	37	2	170762566	170762566	+	Silent	SNP	A	A	T	rs10194785	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	3	3	0	0	0
CCDC150	284992	hgsc.bcm.edu	37	2	197531519	197531519	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
ALPPL2	251	hgsc.bcm.edu	37	2	233274476	233274476	+	Missense_Mutation	SNP	G	G	C	rs61730278	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
SNED1	25992	hgsc.bcm.edu	37	2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	rs17440466	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	10	4	6	0	0
FRG1B	284802	bcgsc.ca	37	20	29632784	29632784	+	RNA	SNP	C	C	G	rs6087299		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	5	3	2	0	0
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	2456	1242	1213	0	1
KRTAP10-2	386679	hgsc.bcm.edu;ucsc.edu	37	21	45970774	45970774	+	Missense_Mutation	SNP	G	G	A	rs76536096	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
PCNT	5116	hgsc.bcm.edu	37	21	47831845	47831845	+	Missense_Mutation	SNP	G	G	A	rs34268261	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
LZTR1	8216	broad.mit.edu	37	22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	391155	391155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
PLXNA1	5361	hgsc.bcm.edu	37	3	126733053	126733053	+	Silent	SNP	C	C	T	rs11719489	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	1	0	1	0	0
FAM157A	728262	bcgsc.ca	37	3	197880136	197880136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
TNIP2	79155	hgsc.bcm.edu	37	4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	rs74548850	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	1	1	0	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633042	6633042	+	Silent	SNP	C	C	T	rs10062086	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	6	0	6	0	0
NPR3	4883	broad.mit.edu	37	5	32712221	32712221	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	37196023	37196023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	1	1	0	0	0
RAD17	5884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68670480	68670480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	3	2	1	0	0
ARHGEF28	64283	broad.mit.edu;bcgsc.ca	37	5	73165981	73165981	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	5	5	0	0	0
MCC	4163	bcgsc.ca	37	5	112458382	112458382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
STC2	8614	broad.mit.edu	37	5	172745086	172745086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	58	58	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	21	0	21	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	17	0	17	0	0
TULP1	7287	bcgsc.ca	37	6	35477025	35477025	+	Missense_Mutation	SNP	C	C	G	rs2064318	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
TULP1	7287	bcgsc.ca	37	6	35477032	35477032	+	Missense_Mutation	SNP	A	A	G	rs2064317	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
RPF2	84154	broad.mit.edu	37	6	111346773	111346773	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	34	34	0	0	0
ENPP3	5169	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132014711	132014711	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	19	10	9	0	0
GIGYF1	64599	broad.mit.edu	37	7	100283970	100283970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
CPA1	1357	broad.mit.edu	37	7	130021608	130021608	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
RP1L1	94137	hgsc.bcm.edu	37	8	10468964	10468964	+	Missense_Mutation	SNP	G	G	A	rs148936402		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
NKX3-1	4824	hgsc.bcm.edu	37	8	23540249	23540249	+	Missense_Mutation	SNP	G	G	A	rs2228013	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
SFRP1	6422	broad.mit.edu	37	8	41166547	41166547	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
C8orf22	492307	broad.mit.edu;bcgsc.ca	37	8	49985442	49985442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	11	0	11	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	4	0	4	0	0
RUSC2	9853	broad.mit.edu	37	9	35546626	35546626	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
IKBKAP	8518	broad.mit.edu;bcgsc.ca	37	9	111674681	111674681	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	8	8	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113196694	113196694	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
MUSK	4593	bcgsc.ca	37	9	113538122	113538122	+	Missense_Mutation	SNP	G	G	A	rs2274419	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
SLC2A6	11182	broad.mit.edu	37	9	136340732	136340732	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
LRRC26	389816	hgsc.bcm.edu	37	9	140064315	140064315	+	Missense_Mutation	SNP	C	C	A	rs7019671		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
SSX3	10214	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48214670	48214670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49067892	49067892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
SHROOM4	57477	broad.mit.edu	37	X	50376327	50376327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	1	1	0	0	0
GPR112	139378	broad.mit.edu	37	X	135427636	135427636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
ESPNP	284729	broad.mit.edu	37	1	17029905	17029906	+	RNA	INS	-	-	A	rs142569124	bycluster	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
SHOX2	6474	hgsc.bcm.edu	37	3	157823581	157823582	+	In_Frame_Ins	INS	-	-	CACCTCCTC	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45970771	45970772	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	0	0	0	0	0
