Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HES3	390992	hgsc.bcm.edu	37	1	6305292	6305292	+	Missense_Mutation	SNP	C	C	A	rs61760836		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
CROCCP2	84809	broad.mit.edu	37	1	16946266	16946266	+	RNA	SNP	G	G	C	rs74813912		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	8	6	2	0	0
MST1P2	11209	bcgsc.ca	37	1	16974012	16974012	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	4	3	1	0	0
KIAA1522	57648	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33235634	33235634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
GJA4	2701	bcgsc.ca	37	1	35260769	35260769	+	Missense_Mutation	SNP	C	C	T	rs1764391	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	12	12	0	0	0
HECTD3	79654	hgsc.bcm.edu	37	1	45476663	45476663	+	Silent	SNP	G	G	A	rs2298005	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	2	2	0	0	0
SEMA6C	10500	hgsc.bcm.edu;bcgsc.ca	37	1	151105831	151105831	+	Missense_Mutation	SNP	T	T	C	rs146921438	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	0	1	0	0
FCRL5	83416	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	157494069	157494069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
CD1A	909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158224992	158224992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	196227367	196227367	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
AURKAPS1	6791	bcgsc.ca	37	1	220440702	220440702	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
CAPN2	824	bcgsc.ca	37	1	223905532	223905532	+	Silent	SNP	G	G	A	rs17596	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
TFAM	7019	bcgsc.ca	37	10	60145342	60145342	+	Missense_Mutation	SNP	G	G	C	rs1937	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	20	20	0	0	0
PLAC9	219348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	81904035	81904035	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	61	61	0	0	0
HECTD2	143279	hgsc.bcm.edu	37	10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	rs7081569	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
CNNM2	54805	hgsc.bcm.edu	37	10	104678350	104678350	+	Missense_Mutation	SNP	G	G	A	rs76057237	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	4	3	1	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219066	134219066	+	Silent	SNP	G	G	C	rs76595411	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	55	37	18	0	0
NLRP6	171389	hgsc.bcm.edu	37	11	280673	280673	+	Silent	SNP	C	C	T	rs12807092		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
LRRC56	115399	bcgsc.ca	37	11	554018	554018	+	Silent	SNP	G	G	A	rs112033363	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	2	2	0	0	0
EPS8L2	64787	broad.mit.edu	37	11	726471	726471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093204	1093204	+	Missense_Mutation	SNP	C	C	A	rs56299570		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64572613	64572613	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	126	0	126	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
FGF4	2249	hgsc.bcm.edu	37	11	69589556	69589556	+	Silent	SNP	G	G	A	rs11600280	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
DDX12P	440081	ucsc.edu	37	12	9585443	9585443	+	RNA	SNP	G	G	A	rs75455455		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	2	2	0	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	1	0	0	0
LRIG3	121227	hgsc.bcm.edu	37	12	59313936	59313936	+	Silent	SNP	T	T	G	rs61754220	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	1	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
TNFSF11	8600	hgsc.bcm.edu	37	13	43148546	43148546	+	Missense_Mutation	SNP	C	C	G	rs138818878		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ZC3H13	23091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	46542982	46542982	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	7	4	3	0	0
PCDH8	5100	hgsc.bcm.edu	37	13	53421432	53421432	+	Silent	SNP	C	C	A	rs3742300	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
COL4A1	1282	bcgsc.ca	37	13	110833702	110833702	+	Silent	SNP	C	C	T	rs16975492	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	61	61	0	0	0
COL4A1	1282	hgsc.bcm.edu	37	13	110959356	110959356	+	Missense_Mutation	SNP	C	C	G	rs9515185		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	3	2	1	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	0	1	0	0
SOX1	6656	bcgsc.ca;mdanderson.org	37	13	112722101	112722101	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	22	22	0	0	0
ZNF219	51222	hgsc.bcm.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	GAGGCT	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	GAGGCT	GAGGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
SSTR1	6751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	38679311	38679311	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
IRF2BPL	64207	hgsc.bcm.edu	37	14	77493809	77493809	+	Silent	SNP	C	C	T	rs61991638	byfrequency;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	5	3	2	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	5	0	5	0	0
EXD1	161829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41501767	41501767	+	Missense_Mutation	SNP	G	G	T	rs113822955	alternate_allele	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
IGDCC4	57722	hgsc.bcm.edu	37	15	65688236	65688236	+	Silent	SNP	G	G	T	rs145183412	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	1	0	0	0
LOC645752	0	bcgsc.ca	37	15	78212177	78212177	+	RNA	SNP	G	G	T	rs12913714		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	88678334	88678334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
NTRK3	4916	bcgsc.ca	37	15	88680684	88680684	+	Silent	SNP	G	G	A	rs1128994	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	1	0	0	0
MRPS34	65993	hgsc.bcm.edu	37	16	1822947	1822947	+	Silent	SNP	C	C	G	rs1076695		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	23	6	17	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	6	0	6	0	0
FTO	79068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	53860242	53860242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	5	3	2	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	0	1	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
TP53	7157	bcgsc.ca	37	17	7578526	7578526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	28	1	27	0	0
HSD17B1	3292	hgsc.bcm.edu	37	17	40706906	40706906	+	Missense_Mutation	SNP	G	G	A	rs605059	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	0	1	0	0
GOSR2	9570	bcgsc.ca	37	17	45008570	45008570	+	Missense_Mutation	SNP	G	G	A	rs197922	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	2	2	0	0	0
GPR142	350383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72368576	72368576	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
RNF213	57674	bcgsc.ca	37	17	78346830	78346830	+	Silent	SNP	G	G	A	rs116948489	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	5	5	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56936395	56936395	+	Silent	SNP	T	T	C	rs7226481		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	70417313	70417313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ZNF516	9658	bcgsc.ca	37	18	74090864	74090864	+	Missense_Mutation	SNP	A	A	G	rs140499406	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	2	2	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	0	1	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	26	26	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	25	25	0	0	0
ADAT3	113179	hgsc.bcm.edu	37	19	1912817	1912817	+	Silent	SNP	C	C	T	rs35870594	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	2	2	0	0	0
ZNF555	148254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2853644	2853644	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	0	1	0	0
TBXA2R	6915	broad.mit.edu	37	19	3600465	3600465	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	10	10	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	1	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	rs890853	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9058325	9058325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ZSWIM4	65249	hgsc.bcm.edu	37	19	13941597	13941597	+	Silent	SNP	C	C	T	rs112676900	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	7	4	3	0	0
OCEL1	79629	hgsc.bcm.edu	37	19	17337555	17337555	+	Silent	SNP	C	C	A	rs3745163	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	29	13	16	0	0
LOC284395	0	broad.mit.edu	37	19	30005963	30005964	+	RNA	DEL	CA	CA	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
WDR87	83889	broad.mit.edu	37	19	38377392	38377409	+	In_Frame_Del	DEL	CCTCCTCCTCCTCCCTTA	CCTCCTCCTCCTCCCTTA	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
RASGRP4	115727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38905653	38905653	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
LTBP4	8425	broad.mit.edu	37	19	41119074	41119074	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	28	28	0	0	0
ZNF234	10780	bcgsc.ca	37	19	44660967	44660967	+	Silent	SNP	A	A	G	rs12609635	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	9	9	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	20	0	20	0	0
ZC3H4	23211	hgsc.bcm.edu	37	19	47570199	47570199	+	Missense_Mutation	SNP	G	G	A	rs202213560		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	13	10	3	0	0
KCNJ14	3770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48965218	48965218	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	0	1	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	66	20	46	0	0
CDC42EP5	148170	hgsc.bcm.edu	37	19	54976356	54976356	+	Missense_Mutation	SNP	C	C	T	rs10017		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	0	1	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ZNF814	730051	ucsc.edu	37	19	58384739	58384739	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	12	10	2	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
TMEM247	388946	ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
USP34	9736	bcgsc.ca	37	2	61566536	61566536	+	Silent	SNP	T	T	C	rs17008405	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	2	2	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
SP5	389058	hgsc.bcm.edu	37	2	171573185	171573185	+	Silent	SNP	G	G	T	rs1134626	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
INPP1	3628	bcgsc.ca	37	2	191231458	191231458	+	Silent	SNP	G	G	A	rs11544940	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	25	25	0	0	0
AQP12A	375318	broad.mit.edu	37	2	241631584	241631584	+	Missense_Mutation	SNP	G	G	T	rs199880904		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26062225	26062234	+	RNA	DEL	TGCAGACCAG	TGCAGACCAG	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	0	1	0	0
ZNF217	7764	bcgsc.ca	37	20	52193088	52193088	+	Missense_Mutation	SNP	C	C	T	rs6063966	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
POTED	317754	bcgsc.ca	37	21	15011924	15011924	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
OLIG1	116448	hgsc.bcm.edu	37	21	34443344	34443344	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
MYO18B	84700	bcgsc.ca	37	22	26159289	26159289	+	Missense_Mutation	SNP	G	G	A	rs133885	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	29439356	29439372	+	Frame_Shift_Del	DEL	CTGATGAACATCGTCAA	CTGATGAACATCGTCAA	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	CTGATGAACATCGTCAA	CTGATGAACATCGTCAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395503	49395503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	786	780	6	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
FRMD4B	23150	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69246086	69246086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	1	0	0	0
CNTN3	5067	bcgsc.ca	37	3	74413676	74413676	+	Silent	SNP	T	T	C	rs6549590	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ARGFX	503582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121289622	121289622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
HEG1	57493	broad.mit.edu;bcgsc.ca	37	3	124746146	124746146	+	Silent	SNP	G	G	A	rs61750908	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
COPG1	22820	hgsc.bcm.edu	37	3	128974928	128974928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	61	58	3	0	0
KY	339855	bcgsc.ca	37	3	134322814	134322814	+	Silent	SNP	G	G	C	rs2293294	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
PRR23C	389152	hgsc.bcm.edu	37	3	138763343	138763343	+	Silent	SNP	T	T	G	rs6804898	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	26	14	12	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228472	4228472	+	Silent	SNP	T	T	C	rs76810534		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
LOC100507266	0	broad.mit.edu	37	4	4620587	4620587	+	RNA	DEL	G	G	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	0	1	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
HNRNPD	3184	hgsc.bcm.edu	37	4	83294784	83294784	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	32	1	31	0	0
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	185340713	185340715	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
TERT	7015	broad.mit.edu;bcgsc.ca	37	5	1253890	1253890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
CCDC125	202243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68599726	68599726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	2	1	1	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482256	140482256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
FAM114A2	10827	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	153372546	153372546	+	Missense_Mutation	SNP	A	A	G	rs202197693		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	22	6	16	0	0
LOC202181	0	broad.mit.edu	37	5	177099140	177099140	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	4	0	4	0	0
RMND5B	64777	bcgsc.ca	37	5	177565255	177565255	+	Silent	SNP	C	C	T	rs61749659	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	2	2	0	0	0
AGXT2L2	85007	hgsc.bcm.edu	37	5	177659519	177659519	+	Silent	SNP	C	C	G	rs116735771	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	5	3	2	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	2	0	2	0	0
HIST1H2AG	8969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27101075	27101075	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	4	2	2	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039364	30039364	+	Missense_Mutation	SNP	C	C	A	rs11753382		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
HLA-B	3106	bcgsc.ca	37	6	31324489	31324489	+	Missense_Mutation	SNP	C	C	G	rs3180380	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	188	188	0	0	0
SLC44A4	80736	broad.mit.edu	37	6	31842716	31842716	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
LOC100652739	0	broad.mit.edu	37	6	150197855	150197855	+	RNA	DEL	G	G	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21778372	21778372	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	3	3	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	31	9	22	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	11	7	4	0	0
ARPC1B	10095	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	98988567	98988567	+	Silent	SNP	G	G	A	rs199528626		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	160	125	35	0	0
HYAL4	23553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123516971	123516971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
ERICH1-AS1	619343	bcgsc.ca	37	8	991870	991870	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
MCPH1	79648	broad.mit.edu	37	8	6264212	6264212	+	Splice_Site	SNP	T	T	G	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
MTUS1	57509	bcgsc.ca	37	8	17601155	17601155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	1	1	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
SHARPIN	81858	hgsc.bcm.edu	37	8	145158503	145158503	+	Silent	SNP	G	G	T	rs11136254		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	19	0	19	0	0
TONSL	4796	hgsc.bcm.edu	37	8	145661675	145661675	+	Missense_Mutation	SNP	G	G	A	rs7830832	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	12	0	12	0	0
AQP7P1	375719	bcgsc.ca	37	9	67273568	67273568	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
LOC100132352	0	bcgsc.ca	37	9	68729166	68729166	+	RNA	SNP	C	C	T	rs79858429	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
AKAP2	11217	hgsc.bcm.edu	37	9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	rs78923754	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
MEGF9	1955	hgsc.bcm.edu	37	9	123476135	123476135	+	Missense_Mutation	SNP	T	T	C	rs201806643		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126135715	126135715	+	Missense_Mutation	SNP	A	A	G	rs2488601		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
NOTCH1	4851	hgsc.bcm.edu	37	9	139400219	139400219	+	Missense_Mutation	SNP	G	G	A	rs61751542	byfrequency	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	6	3	3	0	0
RNR2	6053	broad.mit.edu;bcgsc.ca	37	MT	3143	3143	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	43470	10375	33082	7	5
ND4L	0	broad.mit.edu;bcgsc.ca	37	MT	10671	10671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	13877	8726	5097	34	20
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13918	13918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	8661	2823	5834	2	2
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651199	1651200	+	In_Frame_Ins	INS	-	-	GGCCGTGGCTCC	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
HSPBP1	23640	broad.mit.edu	37	19	55790886	55790887	+	In_Frame_Ins	INS	-	-	GCCGCCGCC	rs3040014	bycluster;by1000genomes	TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
TBP	6908	broad.mit.edu	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	-	CAG	rs201732168		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
MFF	56947	bcgsc.ca	37	2	228194480	228194481	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
GABRA6	2559	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161113302	161113303	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KY-01A-11D-A29I-10	TCGA-OR-A5KY-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	72f9e1d9-c852-423a-94ff-17f763fa2713	f6e93da3-9ee7-4a65-bc04-30f8bb730eef	0	0	0	0	0
