Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CROCCP2	84809	bcgsc.ca	37	1	16950783	16950783	+	RNA	SNP	T	T	A	rs2246249	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	1	1	0	0	0
AKR7L	246181	bcgsc.ca	37	1	19595159	19595159	+	RNA	SNP	C	C	T	rs116631486	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
GMEB1	10691	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29040851	29040851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	4	0	4	0	0
COL16A1	1307	bcgsc.ca	37	1	32165495	32165495	+	Missense_Mutation	SNP	G	G	T	rs2228552	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	2	2	0	0	0
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38397696	38397696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	2	0	2	0	0
IGSF3	3321	ucsc.edu;bcgsc.ca	37	1	117142613	117142613	+	Missense_Mutation	SNP	C	C	T	rs76151115	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	1	1	0	0	0
BPNT1	10380	ucsc.edu	37	1	220231330	220231330	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	9	3	6	0	0
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247599417	247599417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
GPR158	57512	broad.mit.edu	37	10	25861657	25861657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116225545	116225545	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
KRTAP5-4	387267	bcgsc.ca	37	11	1643204	1643204	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	1	1	0	0	0
OR52N1	79473	bcgsc.ca	37	11	5809746	5809746	+	Missense_Mutation	SNP	C	C	T	rs10742787	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
EIF3F	8665	hgsc.bcm.edu	37	11	8009015	8009015	+	Missense_Mutation	SNP	C	C	T	rs1043738	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	88	7	81	0	0
LDHA	3939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18428729	18428729	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	606	580	25	1	0
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47772525	47772525	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	4	1	3	0	0
CCDC88B	283234	hgsc.bcm.edu	37	11	64112617	64112617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
TPCN2	219931	bcgsc.ca	37	11	68840160	68840160	+	Missense_Mutation	SNP	A	A	G	rs3750965	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
TAS2R50	259296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	11138943	11138943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
TAS2R31	259290	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	11183657	11183657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
FAR2	55711	broad.mit.edu	37	12	29450110	29450110	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
KRT5	3852	bcgsc.ca	37	12	52912805	52912805	+	Missense_Mutation	SNP	C	C	T	rs3194286	by2hit2allele	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
EEA1	8411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93251238	93251238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
TMEM119	338773	hgsc.bcm.edu	37	12	108986112	108986112	+	Silent	SNP	G	G	C	rs10861953	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	1	0	1	0	0
SPERT	220082	hgsc.bcm.edu	37	13	46288017	46288017	+	Nonsense_Mutation	SNP	C	C	A	rs79707842		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59835519	59835519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	35	22	13	0	0
CLPX	10845	bcgsc.ca	37	15	65449228	65449228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	23	23	0	0	0
TMEM8A	58986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	426160	426160	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	33	24	9	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
IGSF6	10261	hgsc.bcm.edu;bcgsc.ca	37	16	21652899	21652901	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	TGT	TGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
DLGAP1	9229	broad.mit.edu	37	18	3879165	3879165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7007263	7007263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
CD320	51293	hgsc.bcm.edu	37	19	8373152	8373152	+	Missense_Mutation	SNP	T	T	C	rs2232775	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	47	32	15	0	0
OR7G3	390883	bcgsc.ca	37	19	9236886	9236886	+	Silent	SNP	A	A	G	rs10424352	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
MRI1	84245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13879744	13879744	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	9	6	3	0	0
BRD4	23476	broad.mit.edu	37	19	15354176	15354176	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205288	48205288	+	Silent	SNP	G	G	A	rs8100472		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	1	0	1	0	0
ZNF264	9422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57723887	57723887	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	7	7	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
KRTCAP3	200634	hgsc.bcm.edu;broad.mit.edu	37	2	27665608	27665609	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
TMEM247	388946	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
TTC7A	57217	bcgsc.ca	37	2	47277186	47277186	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	1	1	0	0	0
CD8B	926	hgsc.bcm.edu	37	2	87088964	87088964	+	Silent	SNP	A	A	G	rs62146888	byfrequency;by1000genomes	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
INPP4A	3631	broad.mit.edu	37	2	99172244	99172244	+	Missense_Mutation	SNP	A	A	G	rs2278206	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	2	2	0	0	0
MALL	7851	broad.mit.edu;bcgsc.ca	37	2	110873264	110873264	+	Splice_Site	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
MARCO	8685	bcgsc.ca	37	2	119739063	119739063	+	Missense_Mutation	SNP	T	T	C	rs6761637	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	133014678	133014678	+	RNA	SNP	A	A	G	rs72869462	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	133014703	133014703	+	RNA	SNP	T	T	C	rs72869464	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179512177	179512177	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	497	496	0	1	0
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	2	2	0	0	0
FAM182B	728882	broad.mit.edu	37	20	25755510	25755510	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
FAM182B	728882	broad.mit.edu	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
SNTA1	6640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31996515	31996515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
KRTAP10-2	386679	ucsc.edu	37	21	45971225	45971225	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
DYNC1LI1	51143	bcgsc.ca	37	3	32578505	32578505	+	Missense_Mutation	SNP	T	T	C	rs2303857	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
AMIGO3	386724	broad.mit.edu	37	3	49755730	49755730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
CHST13	166012	hgsc.bcm.edu	37	3	126260630	126260630	+	Missense_Mutation	SNP	A	A	G	rs12495696	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54439911	54439911	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54440019	54440019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
DSPP	1834	hgsc.bcm.edu	37	4	88537078	88537213	+	Frame_Shift_Del	DEL	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537249	88537249	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
SPP1	6696	bcgsc.ca	37	4	88902692	88902692	+	Silent	SNP	T	T	C	rs4754	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	187	186	0	0	1
OSMR	9180	broad.mit.edu;bcgsc.ca	37	5	38876350	38876350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	3	3	0	0	0
MIER3	166968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	56224609	56224609	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
SHROOM1	134549	broad.mit.edu	37	5	132160935	132160935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	1	1	0	0	0
MATR3	9782	bcgsc.ca	37	5	138661351	138661351	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	8	2	6	0	0
DND1	373863	ucsc.edu	37	5	140052407	140052407	+	Missense_Mutation	SNP	G	G	A	rs75523379		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140182624	140182624	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160025960	160025960	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
CDHR2	54825	broad.mit.edu;bcgsc.ca	37	5	175995994	175995994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	107391692	107391692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139189242	139189242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
CPVL	54504	broad.mit.edu;bcgsc.ca	37	7	29135786	29135786	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	7	7	0	0	0
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101758537	101758537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	26	24	2	0	0
LOC100630923	0	bcgsc.ca	37	7	102037041	102037041	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	1	1	0	0	0
ASIC3	9311	broad.mit.edu	37	7	150746080	150746080	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
PRKAG2	51422	ucsc.edu;bcgsc.ca	37	7	151261307	151261307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
SLC35G5	83650	bcgsc.ca	37	8	11188922	11188922	+	Missense_Mutation	SNP	T	T	C	rs76944947	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
XPO7	23039	bcgsc.ca	37	8	21846586	21846586	+	Silent	SNP	G	G	C	rs2306646	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
XPO7	23039	bcgsc.ca	37	8	21862551	21862551	+	Silent	SNP	A	A	G	rs1058486	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	25	25	0	0	0
PLAT	5327	broad.mit.edu	37	8	42044953	42044953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	1	1	0	0	0
OPRK1	4986	hgsc.bcm.edu	37	8	54163562	54163562	+	Silent	SNP	C	C	A	rs1051660	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
SCRT1	83482	hgsc.bcm.edu	37	8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	rs7013127		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
KLF4	9314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	110251263	110251293	+	Frame_Shift_Del	DEL	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	-	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
EPB41L4B	54566	hgsc.bcm.edu	37	9	112082492	112082492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
ENTPD8	377841	broad.mit.edu	37	9	140329710	140329710	+	Missense_Mutation	SNP	G	G	T	rs202080880	alternate_allele	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
COX1	5742	bcgsc.ca	37	MT	6465	6465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	61730	3728	57933	39	30
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	14141	14141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	8772	518	8250	1	3
BCYRN1	618	bcgsc.ca	37	X	70517791	70517791	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	63	1	62	0	0
TMEM247	388946	hgsc.bcm.edu	37	2	46707846	46707847	+	In_Frame_Ins	INS	-	-	GAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGG	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327864	16327865	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
LURAP1L	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	-	GGCGGCGGC	rs139315731	bycluster;by1000genomes	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
C14orf23	387978	bcgsc.ca	37	14	29261244	29261245	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	0	0	0	0	0
