Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CROCCP2	84809	bcgsc.ca	37	1	16955289	16955289	+	RNA	SNP	A	A	G	rs10157908	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
SZT2	23334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43891735	43891735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	0	1	0	0
SZT2	23334	bcgsc.ca	37	1	43906896	43906896	+	Silent	SNP	A	A	G	rs2027130	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
L1TD1	54596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	62675591	62675591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
LCE1E	353135	ucsc.edu;bcgsc.ca	37	1	152760075	152760075	+	Silent	SNP	A	A	G	rs201660535	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
FAM189B	10712	hgsc.bcm.edu	37	1	155220208	155220208	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ZNF670-ZNF695	0	bcgsc.ca	37	1	247206375	247206375	+	RNA	SNP	G	G	A	rs2172795	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	8	0	8	0	0
ECHDC3	79746	bcgsc.ca	37	10	11805249	11805249	+	Silent	SNP	T	T	C	rs61739577	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	32	31	0	0	1
PROSER2	254427	hgsc.bcm.edu	37	10	11912144	11912144	+	Silent	SNP	C	C	T	rs17851505	byfrequency;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
WDFY4	57705	bcgsc.ca	37	10	50184949	50184949	+	Silent	SNP	C	C	T	rs2271565	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	7	7	0	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
PIK3AP1	118788	bcgsc.ca	37	10	98380277	98380277	+	Silent	SNP	C	C	T	rs3748234	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
RRP12	23223	bcgsc.ca	37	10	99160152	99160152	+	Silent	SNP	A	A	G	rs1048442	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	1	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	0	1	0	0
LHPP	64077	hgsc.bcm.edu	37	10	126150523	126150523	+	Missense_Mutation	SNP	C	C	A	rs75426652		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	2	0	2	0	0
CTBP2	1488	bcgsc.ca	37	10	126678148	126678148	+	Missense_Mutation	SNP	G	G	T	rs146419230	alternate_allele	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	20	20	0	0	0
FANK1	92565	hgsc.bcm.edu	37	10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	rs202109621		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	1	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1264691	1264691	+	Missense_Mutation	SNP	T	T	C	rs2943502	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
KRTAP5-4	387267	hgsc.bcm.edu;bcgsc.ca	37	11	1643258	1643258	+	Silent	SNP	C	C	T	rs28696103		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
OR52B6	340980	bcgsc.ca	37	11	5602438	5602438	+	Missense_Mutation	SNP	T	T	A	rs2341432	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
OR8U1	219417	ucsc.edu	37	11	56143357	56143357	+	Silent	SNP	G	G	A	rs76949582	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
OR8U1	219417	ucsc.edu;bcgsc.ca	37	11	56143360	56143360	+	Silent	SNP	C	C	T	rs79469149	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
HNRNPUL2	221092	hgsc.bcm.edu	37	11	62494434	62494434	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
VEGFB	7423	hgsc.bcm.edu	37	11	64005029	64005029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	223	19	204	0	0
ZDHHC24	254359	bcgsc.ca	37	11	66307025	66307025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	46	46	0	0	0
PC	5091	broad.mit.edu	37	11	66631380	66631380	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	9	9	0	0	0
RSF1	51773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77412599	77412599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	5	2	3	0	0
FAM181B	220382	hgsc.bcm.edu	37	11	82443754	82443754	+	Missense_Mutation	SNP	G	G	A	rs147683846		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	2	1	1	0	0
TMPRSS5	80975	bcgsc.ca	37	11	113570385	113570385	+	Missense_Mutation	SNP	C	C	T	rs11601425	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
TAPBPL	55080	bcgsc.ca	37	12	6562823	6562823	+	Missense_Mutation	SNP	C	C	T	rs2041387	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	17	17	0	0	0
TAPBPL	55080	bcgsc.ca	37	12	6562836	6562836	+	Silent	SNP	G	G	A	rs2041388	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	18	18	0	0	0
ZNF384	171017	hgsc.bcm.edu	37	12	6777075	6777075	+	Silent	SNP	C	C	T	rs1052680	alternate_allele	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	18	18	0	0	0
FAM90A1	55138	ucsc.edu	37	12	8375048	8375048	+	Missense_Mutation	SNP	G	G	T	rs17857270	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	0	1	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	657	435	222	0	0
KRT83	3889	broad.mit.edu	37	12	52709845	52709845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
SRRM4	84530	hgsc.bcm.edu	37	12	119594512	119594512	+	Missense_Mutation	SNP	G	G	C	rs140426282		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
SCARB1	949	hgsc.bcm.edu	37	12	125348263	125348263	+	Missense_Mutation	SNP	C	C	T	rs4238001	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	40	13	27	0	0
FZD10	11211	broad.mit.edu	37	12	130647553	130647553	+	Missense_Mutation	SNP	C	C	A	rs200800452		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
MYH6	4624	broad.mit.edu	37	14	23862646	23862646	+	Missense_Mutation	SNP	C	C	A	rs143978652	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
DHRS4	10901	ucsc.edu	37	14	24424289	24424289	+	Silent	SNP	T	T	C	rs1127279		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	46	46	0	0	0
PLEKHG3	26030	hgsc.bcm.edu	37	14	65209970	65209970	+	Missense_Mutation	SNP	G	G	A	rs201046500		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
MAGEL2	54551	broad.mit.edu	37	15	23889708	23889708	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369531	65369531	+	Silent	SNP	G	G	T	rs2946642	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
CHRNB4	1143	bcgsc.ca	37	15	78921762	78921762	+	Silent	SNP	G	G	A	rs3743072	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051801	79051801	+	Missense_Mutation	SNP	C	C	A	rs201472223		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	5	5	0	0	0
ADAMTS7	11173	ucsc.edu	37	15	79089111	79089111	+	Missense_Mutation	SNP	A	A	G	rs3825807	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
FAM174B	400451	broad.mit.edu	37	15	93198679	93198684	+	In_Frame_Del	DEL	TGGAGC	TGGAGC	-	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
MRPS34	65993	hgsc.bcm.edu	37	16	1823054	1823054	+	Missense_Mutation	SNP	C	C	G	rs11552432		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	7	3	4	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2049849	2049849	+	Silent	SNP	T	T	C	rs12149722		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	23	8	15	0	0
MTHFSD	64779	bcgsc.ca	37	16	86575737	86575737	+	Silent	SNP	C	C	T	rs3829533	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	10	10	0	0	0
ZNF469	84627	broad.mit.edu	37	16	88494947	88494947	+	Missense_Mutation	SNP	T	T	C	rs11648572	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ZNF469	84627	broad.mit.edu	37	16	88494976	88494976	+	Missense_Mutation	SNP	A	A	C	rs11640794	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ZNF469	84627	hgsc.bcm.edu	37	16	88497394	88497394	+	Silent	SNP	T	T	C	rs111557381	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ZC3H18	124245	broad.mit.edu	37	16	88677692	88677693	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
KDM6B	23135	broad.mit.edu	37	17	7752795	7752795	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	5	5	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21904194	21904194	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ACACA	31	bcgsc.ca	37	17	35609866	35609866	+	Silent	SNP	C	C	T	rs2229416	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254013	39254013	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu;bcgsc.ca	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
KRTAP4-11	653240	ucsc.edu	37	17	39274157	39274157	+	Silent	SNP	G	G	A	rs76095941		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274238	39274238	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
BPTF	2186	hgsc.bcm.edu	37	17	65955758	65955758	+	Silent	SNP	T	T	C	rs202116659		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	7	7	0	0	0
TMC6	11322	bcgsc.ca	37	17	76121864	76121864	+	Missense_Mutation	SNP	A	A	G	rs2748427	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	1	0	0	0
CBX4	8535	hgsc.bcm.edu	37	17	77808133	77808133	+	Silent	SNP	G	G	A	rs62075209		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
MADCAM1	8174	bcgsc.ca	37	19	501701	501701	+	Missense_Mutation	SNP	G	G	A	rs72970252	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
FAM108A1	81926	hgsc.bcm.edu	37	19	1881488	1881488	+	Silent	SNP	G	G	A	rs200425255		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	25	8	17	0	0
LINGO3	645191	hgsc.bcm.edu	37	19	2291501	2291501	+	Missense_Mutation	SNP	T	T	A	rs201142184		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
PTPRS	5802	hgsc.bcm.edu	37	19	5222831	5222831	+	Missense_Mutation	SNP	G	G	A	rs2230610	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	3	0	2	1	0
CAMSAP3	57662	bcgsc.ca	37	19	7675369	7675369	+	Silent	SNP	C	C	T	rs62113420	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	3	0	3	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
OCEL1	79629	hgsc.bcm.edu	37	19	17337555	17337555	+	Silent	SNP	C	C	A	rs3745163	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	12	1	11	0	0
IGFLR1	79713	hgsc.bcm.edu	37	19	36231288	36231288	+	Missense_Mutation	SNP	C	C	T	rs140952221	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ZNF420	147923	broad.mit.edu	37	19	37618242	37618242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	1	0	0	0
ZNF285	26974	ucsc.edu	37	19	44891043	44891043	+	Missense_Mutation	SNP	G	G	T	rs77661661		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	1	0	0	0
SCAF1	58506	hgsc.bcm.edu	37	19	50154607	50154607	+	Missense_Mutation	SNP	C	C	T	rs146455893	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	7	2	5	0	0
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
FAM71E2	284418	hgsc.bcm.edu	37	19	55869902	55869902	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
NLRP5	126206	bcgsc.ca	37	19	56572875	56572875	+	Missense_Mutation	SNP	G	G	A	rs36118060	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	2	2	0	0	0
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	1	0	0	0
SIX3	6496	hgsc.bcm.edu	37	2	45171842	45171842	+	Silent	SNP	A	A	G	rs62840660	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ANKRD20A8P	729171	broad.mit.edu	37	2	95515230	95515230	+	RNA	DEL	A	A	-	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ANKRD20A8P	729171	broad.mit.edu	37	2	95519360	95519360	+	RNA	SNP	G	G	T	rs77762483		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
FMNL2	114793	hgsc.bcm.edu	37	2	153476069	153476069	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
EFHD1	80303	bcgsc.ca	37	2	233537125	233537125	+	Missense_Mutation	SNP	A	A	G	rs11550699	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	1	0	0	0
C2orf54	79919	bcgsc.ca	37	2	241828012	241828012	+	Silent	SNP	T	T	C	rs6708304	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2573005	2573005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	2	0	2	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
CRYBB1	1414	bcgsc.ca	37	22	26995525	26995525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	2	2	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28195386	28195386	+	Missense_Mutation	SNP	C	C	A	rs45589338	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
NPTXR	23467	broad.mit.edu	37	22	39222627	39222627	+	Missense_Mutation	SNP	G	G	A	rs34637063	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	3	3	0	0	0
CYP2D7P1	1564	broad.mit.edu	37	22	42537271	42537271	+	RNA	SNP	T	T	C	rs28510588	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	2	2	0	0	0
CYP2D7P1	1564	broad.mit.edu	37	22	42537280	42537280	+	RNA	SNP	T	T	C	rs28367005	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	4	4	0	0	0
PRR5	55615	hgsc.bcm.edu	37	22	45132831	45132831	+	Missense_Mutation	SNP	G	G	A	rs56299305	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	7	5	2	0	0
TTC38	55020	bcgsc.ca	37	22	46664412	46664412	+	Missense_Mutation	SNP	C	C	T	rs117135869	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
TTLL3	26140	bcgsc.ca	37	3	9870857	9870857	+	Silent	SNP	G	G	A	rs2290303	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	15	15	0	0	0
FANCD2	2177	hgsc.bcm.edu;bcgsc.ca	37	3	10108898	10108898	+	Silent	SNP	A	A	G	rs77246387	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
FANCD2	2177	hgsc.bcm.edu;bcgsc.ca	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	1	0	0	0
NR2C2	7182	bcgsc.ca	37	3	15046088	15046088	+	Silent	SNP	T	T	C	rs77813966	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
PRSS42	339906	hgsc.bcm.edu	37	3	46875395	46875395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
IQCF1	132141	bcgsc.ca	37	3	51930850	51930850	+	Missense_Mutation	SNP	T	T	C	rs57859638	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
PLXNA1	5361	hgsc.bcm.edu	37	3	126733053	126733053	+	Silent	SNP	C	C	T	rs11719489	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
KLHL24	54800	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183388949	183388949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	9	7	2	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
WFS1	7466	bcgsc.ca	37	4	6302545	6302545	+	Silent	SNP	C	C	T	rs56072215	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	14	14	0	0	0
NKX3-2	579	hgsc.bcm.edu	37	4	13545716	13545716	+	Missense_Mutation	SNP	G	G	C	rs202191746		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68510476	68510476	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	2	1	1	0	0
UGT2B11	10720	ucsc.edu	37	4	70066376	70066376	+	Missense_Mutation	SNP	C	C	G	rs144149579	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
UGT2B11	10720	ucsc.edu	37	4	70066408	70066408	+	Missense_Mutation	SNP	C	C	A	rs200919649		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140798	5140798	+	Missense_Mutation	SNP	C	C	T	rs61754840		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
HLA-J	3137	broad.mit.edu;bcgsc.ca	37	6	29977145	29977145	+	RNA	SNP	G	G	C	rs356969	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
TRERF1	55809	broad.mit.edu	37	6	42236973	42236973	+	Missense_Mutation	SNP	C	C	T	rs61756353	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
DST	667	bcgsc.ca	37	6	56327849	56327849	+	Missense_Mutation	SNP	C	C	T	rs11758339	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	1	0	0	0
DST	667	bcgsc.ca	37	6	56484758	56484758	+	Silent	SNP	C	C	T	rs2230862	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271952	132271952	+	Missense_Mutation	SNP	G	G	C	rs7451102		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271959	132271959	+	Silent	SNP	T	T	G	rs12206231		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271980	132271980	+	Silent	SNP	T	T	G	rs6934749		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	7	0	7	0	0
MTRF1L	54516	hgsc.bcm.edu	37	6	153323806	153323806	+	Silent	SNP	A	A	G	rs3818126	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
TBP	6908	bcgsc.ca	37	6	170871094	170871094	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	78	75	2	0	1
VWDE	221806	broad.mit.edu;bcgsc.ca	37	7	12376811	12376811	+	Missense_Mutation	SNP	A	A	C	rs2192828	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	2	1	1	0	0
NT5C3A	0	ucsc.edu	37	7	33054388	33054388	+	Missense_Mutation	SNP	T	T	C	rs79747830	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	27	27	0	0	0
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	45009379	45009387	+	In_Frame_Del	DEL	GCCAGCAGA	GCCAGCAGA	-	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	GCCAGCAGA	GCCAGCAGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
AUTS2	26053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70227999	70227999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
STEAP1	26872	ucsc.edu	37	7	89790570	89790570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	2	2	0	0	0
LRCH4	4034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100175783	100175783	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	13	6	7	0	0
DGKI	9162	bcgsc.ca	37	7	137304602	137304602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
NOM1	64434	hgsc.bcm.edu	37	7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	rs6969990	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
UBE3C	9690	hgsc.bcm.edu	37	7	157013436	157013436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	1	0	0	0
GPR124	25960	broad.mit.edu	37	8	37698805	37698805	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	2	2	0	0	0
GPR124	25960	hgsc.bcm.edu	37	8	37699516	37699516	+	Silent	SNP	C	C	T	rs7010546	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
EPPK1	83481	bcgsc.ca	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940543	144940543	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
DMRT1	1761	hgsc.bcm.edu	37	9	841971	841971	+	Missense_Mutation	SNP	T	T	A	rs3739583	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
UBAP2	55833	bcgsc.ca	37	9	33941759	33941759	+	Missense_Mutation	SNP	T	T	C	rs307658	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	1	1	0	0	0
AQP7P1	375719	bcgsc.ca	37	9	67273568	67273568	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
FGD3	89846	bcgsc.ca	37	9	95738781	95738781	+	Silent	SNP	C	C	A	rs3802381	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
PTPDC1	138639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	96846961	96846961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
LHX3	8022	hgsc.bcm.edu	37	9	139096812	139096812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141069468	141069468	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3240298	3240298	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
RBMXL3	139804	broad.mit.edu;bcgsc.ca	37	X	114426765	114426765	+	Missense_Mutation	SNP	C	C	T	rs11795689		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
SPRY3	10251	bcgsc.ca	37	X	155004280	155004280	+	Silent	SNP	A	A	G	rs306888	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
KRTAP4-3	85290	broad.mit.edu;bcgsc.ca	37	17	39324229	39324230	+	In_Frame_Ins	INS	-	-	GCAGCAGGTGGTCAG	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
SHANK1	50944	broad.mit.edu	37	19	51165375	51165376	+	Frame_Shift_Ins	INS	-	-	C	rs146869643	by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
PRAMEF2	65122	bcgsc.ca	37	1	12919623	12919624	+	Missense_Mutation	DNP	CC	CC	TG	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
AKR7L	246181	bcgsc.ca	37	1	19600376	19600377	+	RNA	DNP	TT	TT	GC	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	0	0	0	0	0
