Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
VWA5B1	127731	bcgsc.ca	37	1	20640906	20640906	+	Silent	SNP	C	C	T	rs61741263	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
MATN1	4146	bcgsc.ca	37	1	31188089	31188089	+	Silent	SNP	C	C	T	rs1065755	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
HIAT1	64645	broad.mit.edu	37	1	100527445	100527445	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	31	30	1	0	0
LAMC1	3915	bcgsc.ca	37	1	183072590	183072590	+	Silent	SNP	T	T	C	rs2296288	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	11	11	0	0	0
CRB1	23418	broad.mit.edu	37	1	197298083	197298083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	17	0	17	0	0
OR2T34	127068	ucsc.edu	37	1	248737734	248737734	+	Missense_Mutation	SNP	G	G	A	rs946770		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
SFMBT2	57713	hgsc.bcm.edu	37	10	7213977	7213977	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	2	2	0	0	0
TECTB	6975	broad.mit.edu	37	10	114053512	114053512	+	Missense_Mutation	SNP	T	T	A	rs41296127	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651229	1651229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498671	71498671	+	Missense_Mutation	SNP	G	G	C	rs12283346	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
C11orf92	399948	bcgsc.ca	37	11	111167557	111167557	+	RNA	SNP	A	A	C	rs6589218	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	1	1	0	0	0
KLRC4-KLRK1	0	bcgsc.ca	37	12	10525740	10525740	+	Silent	SNP	C	C	T	rs1049172	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	1	1	0	0	0
EFHA1	221154	hgsc.bcm.edu	37	13	22178258	22178258	+	Silent	SNP	C	C	T	rs9509812	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	3	0	3	0	0
DLEU7	220107	hgsc.bcm.edu	37	13	51417535	51417535	+	Missense_Mutation	SNP	G	G	A	rs898861		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	2	0	2	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	1	0	1	0	0
C14orf180	400258	hgsc.bcm.edu	37	14	105055119	105055127	+	Frame_Shift_Del	DEL	GACGGGCAG	GACGGGCAG	-	rs61397088	bycluster;alternate_allele	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	GACGGGCAG	GACGGGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
PLCB2	5330	hgsc.bcm.edu	37	15	40583560	40583560	+	Silent	SNP	G	G	T	rs62021888		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
DUOX2	50506	bcgsc.ca	37	15	45388196	45388196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
SECISBP2L	9728	broad.mit.edu	37	15	49319661	49319661	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
DMXL2	23312	broad.mit.edu	37	15	51830641	51830641	+	Missense_Mutation	SNP	T	T	G	rs143811213		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
POLR2M	81488	hgsc.bcm.edu	37	15	58001174	58001174	+	Missense_Mutation	SNP	A	A	C	rs61758130	bycluster;byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	34	34	0	0	0
C15orf40	123207	broad.mit.edu	37	15	83680329	83680329	+	Missense_Mutation	SNP	G	G	A	rs17361375	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	17	17	0	0	0
SEPT12	124404	bcgsc.ca	37	16	4837545	4837545	+	Silent	SNP	A	A	G	rs9673735	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	1	0	1	0	0
GOT2	2806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58742148	58742148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	255	168	87	0	0
ELMO3	79767	bcgsc.ca	37	16	67234134	67234134	+	Missense_Mutation	SNP	A	A	G	rs8058861	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72993517	72993517	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	3	1	2	0	0
PKD1L2	114780	bcgsc.ca	37	16	81232564	81232564	+	Missense_Mutation	SNP	T	T	G	rs7194871	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
CDH15	1013	hgsc.bcm.edu	37	16	89258747	89258747	+	Missense_Mutation	SNP	A	A	C	rs75791347	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
NLGN2	57555	hgsc.bcm.edu	37	17	7320874	7320874	+	Missense_Mutation	SNP	C	C	T	rs62061174		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	1	0	1	0	0
TMEM132E	124842	bcgsc.ca	37	17	32957114	32957114	+	Missense_Mutation	SNP	G	G	A	rs56879769	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	5	5	0	0	0
STARD3	10948	bcgsc.ca	37	17	37815749	37815749	+	Silent	SNP	G	G	A	rs73296109	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	47	47	0	0	0
IKZF3	22806	broad.mit.edu	37	17	37922670	37922670	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
THRA	7067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38240130	38240130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	60	30	30	0	0
MAP3K14	9020	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43347828	43347828	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	14	10	4	0	0
RNFT1	51136	bcgsc.ca	37	17	58031412	58031412	+	Silent	SNP	A	A	G	rs11368	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
PGS1	9489	hgsc.bcm.edu	37	17	76374760	76374760	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56936395	56936395	+	Silent	SNP	T	T	C	rs7226481		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
CACTIN	58509	hgsc.bcm.edu	37	19	3613346	3613346	+	Missense_Mutation	SNP	G	G	A	rs2074789	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	2	0	2	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217510	4217510	+	Missense_Mutation	SNP	A	A	T	rs12980998	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
EMR1	2015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6937659	6937659	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	rs890853	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	20	18	2	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13409706	13409706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17296757	17296757	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	60	41	19	0	0
LOC100506469	0	bcgsc.ca	37	19	36033825	36033825	+	RNA	SNP	G	G	A	rs2293681	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	6	6	0	0	0
ADCK4	79934	broad.mit.edu	37	19	41209717	41209717	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	22	20	2	0	0
CIC	23152	hgsc.bcm.edu	37	19	42799208	42799208	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	22	11	11	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	32	17	15	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
SLC1A5	6510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47280654	47280654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
SLC8A2	6543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	47935685	47935685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	9	5	4	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205288	48205288	+	Silent	SNP	G	G	A	rs8100472		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
MYH14	79784	hgsc.bcm.edu	37	19	50713713	50713713	+	Missense_Mutation	SNP	C	C	A	rs590722		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
RGPD8	727851	broad.mit.edu	37	2	113147740	113147740	+	Missense_Mutation	SNP	C	C	T	rs201000445		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	56	56	0	0	0
ANKRD30BL	554226	broad.mit.edu	37	2	132919070	132919070	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
BMPR2	659	hgsc.bcm.edu	37	2	203379616	203379616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
DES	1674	hgsc.bcm.edu	37	2	220283238	220283238	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
SPEG	10290	hgsc.bcm.edu	37	2	220348480	220348480	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ALPPL2	251	hgsc.bcm.edu	37	2	233274476	233274476	+	Missense_Mutation	SNP	G	G	C	rs61730278	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
FAM182A	284800	bcgsc.ca	37	20	26062210	26062210	+	RNA	SNP	T	T	G	rs78705534		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
NECAB3	63941	bcgsc.ca	37	20	32257182	32257182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	1	1	0	0	0
TNNC2	7125	bcgsc.ca	37	20	44452697	44452697	+	Silent	SNP	C	C	A	rs4629	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	14	14	0	0	0
KRTAP10-10	353333	bcgsc.ca	37	21	46057590	46057590	+	Missense_Mutation	SNP	A	A	T	rs9306109	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu;ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	57	57	0	0	0
SAMM50	25813	bcgsc.ca	37	22	44368122	44368122	+	Missense_Mutation	SNP	A	A	G	rs3761472	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	734	472	261	0	1
MST1	4485	broad.mit.edu	37	3	49723596	49723596	+	Missense_Mutation	SNP	G	G	A	rs200900272		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	5	5	0	0	0
CHDH	55349	hgsc.bcm.edu	37	3	53857917	53857917	+	Missense_Mutation	SNP	T	T	G	rs9001	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	1	1	0	0	0
FAM208A	23272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56667845	56667845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	25	15	10	0	0
ACPP	55	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132061444	132061444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	24	18	6	0	0
PRR23C	389152	hgsc.bcm.edu	37	3	138763343	138763343	+	Silent	SNP	T	T	G	rs6804898	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ADIPOQ-AS1	100874095	bcgsc.ca	37	3	186571123	186571123	+	RNA	SNP	G	G	T	rs1501299	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
LRRC33	375387	broad.mit.edu;bcgsc.ca	37	3	196387651	196387651	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	1	1	0	0	0
CRMP1	1400	hgsc.bcm.edu	37	4	5894586	5894586	+	Silent	SNP	G	G	A	rs143304363		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
PSAPL1	768239	bcgsc.ca	37	4	7436073	7436073	+	Silent	SNP	C	C	T	rs61740031	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536999	88536999	+	Missense_Mutation	SNP	A	A	G	rs202222170		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
PDCD6	10016	hgsc.bcm.edu	37	5	271858	271869	+	In_Frame_Del	DEL	CCGGCCCTGGGG	CCGGCCCTGGGG	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	CCGGCCCTGGGG	CCGGCCCTGGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ARRDC3	57561	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90671379	90671379	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	76	54	22	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	4	0	4	0	0
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797105	128797105	+	Silent	SNP	G	G	A	rs72663400	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
PCDHGA2	56113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140719726	140719726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	15	11	4	0	0
PCDHGA3	56112	mdanderson.org	37	5	140725420	140725420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	35	33	2	0	0
ARAP3	64411	broad.mit.edu	37	5	141034950	141034950	+	Silent	SNP	C	C	T	rs72792351	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	3	3	0	0	0
LOC202181	0	broad.mit.edu	37	5	177099140	177099140	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	2	0	2	0	0
HLA-DQB1	3119	bcgsc.ca	37	6	32629963	32629963	+	Missense_Mutation	SNP	C	C	T	rs1049100	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	3	3	0	0	0
AIM1	202	bcgsc.ca	37	6	106987370	106987370	+	Missense_Mutation	SNP	A	A	C	rs783396	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	3	3	0	0	0
ZC3H12D	340152	hgsc.bcm.edu	37	6	149772190	149772190	+	Missense_Mutation	SNP	G	G	A	rs112722576		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
DLL1	28514	broad.mit.edu	37	6	170594743	170594743	+	Missense_Mutation	SNP	C	C	T	rs149768426	alternate_allele	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	9	9	0	0	0
MICALL2	79778	hgsc.bcm.edu	37	7	1484572	1484572	+	Silent	SNP	A	A	G	rs10435184		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	6	0	6	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	4	1	3	0	0
AKR1B15	441282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134252962	134252962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
PTN	5764	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	136938212	136938212	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ASIC3	9311	bcgsc.ca	37	7	150747650	150747650	+	Silent	SNP	G	G	T	rs62001897	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55541829	55541829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	15	10	5	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	7	4	3	0	0
OPLAH	26873	hgsc.bcm.edu	37	8	145106939	145106940	+	Splice_Site	DEL	CC	CC	-	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	1	0	1	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	214706	214706	+	Missense_Mutation	SNP	G	G	C	rs540473	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
POLR1E	64425	bcgsc.ca	37	9	37493588	37493588	+	Silent	SNP	C	C	T	rs10758434	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	30	30	0	0	0
TMEM245	23731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	111812906	111812906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	40	40	0	0	0
USP20	10868	broad.mit.edu	37	9	132637028	132637028	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
LCN15	389812	bcgsc.ca	37	9	139656670	139656670	+	Missense_Mutation	SNP	T	T	C	rs2297722	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141069885	141069885	+	RNA	SNP	A	A	C	rs62581043	byfrequency	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	25	25	0	0	0
RNR2	6053	broad.mit.edu;bcgsc.ca	37	MT	3019	3019	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	4503	3824	642	12	25
COX2	5743	broad.mit.edu;bcgsc.ca	37	MT	8013	8013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	23181	19384	3725	25	47
ATP1B4	23439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	119504588	119504588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
NCOR2	9612	broad.mit.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT	rs143952466	bycluster;by1000genomes	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
FLJ36000	0	broad.mit.edu	37	17	21906824	21906825	+	RNA	INS	-	-	TT	rs58465113	alternate_allele	TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
DSTN	11034	broad.mit.edu	37	20	17581488	17581489	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797315	128797316	+	In_Frame_Ins	INS	-	-	CCCGGC	rs142924298		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
BHLHE22	27319	broad.mit.edu	37	8	65494007	65494008	+	In_Frame_Ins	INS	-	-	AGCGGC	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5L8-01A-11D-A29I-10	TCGA-OR-A5L8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d285312e-d9c6-4f00-9667-8509050dda5e	34ed1a7d-b555-4a7c-bd40-e984f13c1eb0	0	0	0	0	0
