Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CROCC	9696	hgsc.bcm.edu	37	1	17265507	17265507	+	Missense_Mutation	SNP	C	C	T	rs201951425	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ST6GALNAC5	81849	broad.mit.edu	37	1	77334277	77334279	+	In_Frame_Del	DEL	GCA	GCA	-	rs113832855	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
NBPF4	148545	broad.mit.edu	37	1	108769307	108769307	+	Silent	SNP	G	G	A	rs2582071		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ADARB2-AS1	642394	bcgsc.ca	37	10	1578004	1578004	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
TMEM72	643236	bcgsc.ca	37	10	45430462	45430462	+	Silent	SNP	C	C	T	rs17417442	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
GDF10	2662	hgsc.bcm.edu	37	10	48438647	48438649	+	In_Frame_Del	DEL	GCA	GCA	-	rs71522826	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	GCA	GCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
TET1	80312	broad.mit.edu	37	10	70451264	70451264	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
PI4K2A	55361	bcgsc.ca	37	10	99410790	99410790	+	Silent	SNP	T	T	C	rs7915721	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
IRF7	3665	hgsc.bcm.edu	37	11	615103	615103	+	Silent	SNP	G	G	A	rs113083699		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	1	1	0	0	0
MUC6	4588	bcgsc.ca	37	11	1016835	1016835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093314	1093314	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ART5	116969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	3661315	3661315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
NLRP14	338323	broad.mit.edu	37	11	7064833	7064833	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
USP2	9099	hgsc.bcm.edu	37	11	119234664	119234664	+	Silent	SNP	G	G	C	rs201288742		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
LOC643339	0	broad.mit.edu	37	12	93488955	93488956	+	RNA	DEL	CA	CA	-	rs72083734	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ATXN2	6311	hgsc.bcm.edu	37	12	112036797	112036797	+	Silent	SNP	C	C	T	rs4098854		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	4	4	0	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
SRRM4	84530	hgsc.bcm.edu	37	12	119594447	119594447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
SRRM4	84530	hgsc.bcm.edu	37	12	119594453	119594453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
EP400	57634	bcgsc.ca	37	12	132547090	132547090	+	Silent	SNP	A	A	G	rs7974276	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
MIPEPP3	650794	bcgsc.ca	37	13	21896549	21896549	+	RNA	SNP	G	G	A	rs35029090	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
HNRNPA1L2	144983	hgsc.bcm.edu	37	13	53217493	53217493	+	Missense_Mutation	SNP	A	A	G	rs78872760	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	132	129	3	0	0
ARHGEF7	8874	bcgsc.ca	37	13	111870037	111870037	+	Silent	SNP	T	T	C	rs2296354	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
NDRG2	57447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21488972	21488972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	2	0	2	0	0
SAMD4A	23034	hgsc.bcm.edu	37	14	55227152	55227152	+	Missense_Mutation	SNP	G	G	T	rs149416017		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
PLIN1	5346	hgsc.bcm.edu	37	15	90209135	90209135	+	Silent	SNP	G	G	A	rs8179074	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ANKS3	124401	hgsc.bcm.edu	37	16	4748461	4748461	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	1	1	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
SPNS3	201305	bcgsc.ca	37	17	4391132	4391132	+	Silent	SNP	C	C	T	rs2291743	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	2	2	0	0	0
SPNS3	201305	bcgsc.ca	37	17	4391153	4391153	+	Silent	SNP	A	A	G	rs333122	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	3	3	0	0	0
RAI1	10743	ucsc.edu	37	17	17697102	17697102	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21904864	21904864	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
RNF135	84282	hgsc.bcm.edu	37	17	29298390	29298390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ARL5C	390790	broad.mit.edu;bcgsc.ca	37	17	37316988	37316988	+	Missense_Mutation	SNP	T	T	C	rs16522	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
TTLL6	284076	hgsc.bcm.edu	37	17	46846505	46846505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
TEN1-CDK3	100529145	broad.mit.edu	37	17	73997474	73997474	+	RNA	SNP	G	G	A	rs2069528	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
EVPL	2125	bcgsc.ca	37	17	74014668	74014668	+	Missense_Mutation	SNP	T	T	C	rs2071192	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
UTS2R	2837	broad.mit.edu	37	17	80333066	80333066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ZFR2	23217	hgsc.bcm.edu	37	19	3831404	3831404	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
PLIN5	440503	hgsc.bcm.edu	37	19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	rs1062223	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ZNF266	10781	bcgsc.ca	37	19	9524185	9524185	+	Silent	SNP	A	A	G	rs2241356	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	1	1	0	0	0
NWD1	284434	broad.mit.edu	37	19	16859997	16859997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
GDF1	2657	hgsc.bcm.edu	37	19	18980172	18980172	+	Missense_Mutation	SNP	G	G	A	rs4808863	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ZNF676	163223	hgsc.bcm.edu	37	19	22363460	22363460	+	Silent	SNP	A	A	G	rs78757874		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127439	47127439	+	Missense_Mutation	SNP	A	A	G	rs200213497		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
PPP1R15A	23645	bcgsc.ca	37	19	49377873	49377873	+	Silent	SNP	G	G	A	rs35023389	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	11	11	0	0	0
GYS1	2997	bcgsc.ca	37	19	49485548	49485548	+	Silent	SNP	G	G	A	rs5464	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
CGB7	94027	ucsc.edu	37	19	49558216	49558216	+	Missense_Mutation	SNP	C	C	T	rs36106771	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ZNF83	55769	bcgsc.ca	37	19	53116856	53116856	+	Missense_Mutation	SNP	T	T	A	rs199873537		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	6	5	1	0	0
ZBTB45	84878	hgsc.bcm.edu	37	19	59028585	59028585	+	Silent	SNP	G	G	A	rs11545185	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
TMEM247	388946	bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
BCL11A	53335	broad.mit.edu	37	2	60688968	60688968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	133014678	133014678	+	RNA	SNP	A	A	G	rs72869462	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
COPS7B	64708	broad.mit.edu;bcgsc.ca	37	2	232659056	232659056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26054990	26054992	+	RNA	DEL	CAC	CAC	-	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061803	26061803	+	RNA	SNP	C	C	A	rs78281752	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	1	1	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	3	3	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29625971	29625971	+	RNA	SNP	C	C	A	rs145033899		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
WISP2	8839	hgsc.bcm.edu	37	20	43348735	43348735	+	Silent	SNP	C	C	A	rs2296530	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	1	0	1	0	0
LOC96610	0	bcgsc.ca	37	22	22661626	22661626	+	RNA	SNP	T	T	C	rs2329974	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	1	1	0	0	0
MN1	4330	broad.mit.edu	37	22	28194934	28194936	+	In_Frame_Del	DEL	TGC	TGC	-	rs34890218		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	13612958	13612958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
LINC00620	285375	broad.mit.edu	37	3	13695598	13695598	+	RNA	DEL	C	C	-	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
HHATL	57467	bcgsc.ca	37	3	42735150	42735150	+	Missense_Mutation	SNP	T	T	C	rs11079	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	3	3	0	0	0
NBEAL2	23218	broad.mit.edu	37	3	47036675	47036675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
PPP2R3A	5523	bcgsc.ca	37	3	135722264	135722264	+	Missense_Mutation	SNP	A	A	G	rs17197552	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
SPON2	10417	hgsc.bcm.edu	37	4	1165131	1165131	+	Missense_Mutation	SNP	C	C	T	rs193114328	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388664	1388664	+	Missense_Mutation	SNP	T	T	C	rs199774688	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	2	2	0	0	0
HTT	3064	bcgsc.ca	37	4	3215835	3215835	+	Missense_Mutation	SNP	T	T	C	rs362331	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537090	88537090	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ADH6	130	broad.mit.edu	37	4	100137315	100137316	+	Splice_Site	DEL	TA	TA	-	rs56278423	bycluster	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
COL25A1	84570	bcgsc.ca	37	4	109863370	109863370	+	Missense_Mutation	SNP	C	C	T	rs17531474	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
LRIT3	345193	broad.mit.edu	37	4	110772859	110772859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
GABRG2	2566	hgsc.bcm.edu	37	5	161529571	161529571	+	Missense_Mutation	SNP	A	A	G	rs211035	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
HLA-B	3106	bcgsc.ca	37	6	31324516	31324516	+	Missense_Mutation	SNP	C	C	A	rs1131215	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	6	6	0	0	0
HLA-B	3106	bcgsc.ca	37	6	31324586	31324586	+	Silent	SNP	C	C	T	rs151341145	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	67	67	0	0	0
TNXB	7148	hgsc.bcm.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
HLA-DRB1	3123	bcgsc.ca	37	6	32557436	32557436	+	Missense_Mutation	SNP	C	C	G	rs201614260	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
TRERF1	55809	broad.mit.edu	37	6	42196330	42196330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	1	1	0	0	0
FAM46A	55603	broad.mit.edu	37	6	82461728	82461742	+	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	CCGCCGAAGTCGCCG	-	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
SYTL3	94120	broad.mit.edu	37	6	159086557	159086557	+	Missense_Mutation	SNP	C	C	T	rs150257129	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
EGFR	1956	bcgsc.ca	37	7	55249063	55249063	+	Silent	SNP	G	G	A	rs1050171	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
GAL3ST4	79690	bcgsc.ca	37	7	99758136	99758136	+	Silent	SNP	T	T	G	rs3800951	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
RELN	5649	broad.mit.edu	37	7	103206814	103206814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
SLC37A3	84255	bcgsc.ca	37	7	140080087	140080087	+	Missense_Mutation	SNP	C	C	G	rs62490396	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87437479	87437479	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
THEM6	51337	hgsc.bcm.edu	37	8	143809193	143809193	+	Silent	SNP	C	C	T	rs2257840		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144990396	144990396	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	5	5	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998514	144998514	+	Silent	SNP	C	C	T	rs75586449	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	1	1	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
AQP7	364	ucsc.edu	37	9	33385287	33385287	+	Missense_Mutation	SNP	T	T	C	rs74557595		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
CA9	768	hgsc.bcm.edu	37	9	35675852	35675852	+	Silent	SNP	C	C	G	rs2301370	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
LOC642236	0	bcgsc.ca	37	9	68427854	68427854	+	RNA	SNP	C	C	T	rs4006818		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	1	1	0	0	0
LOC642236	0	bcgsc.ca	37	9	68427876	68427876	+	RNA	SNP	C	C	T	rs80085886	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	2	2	0	0	0
LOC100132352	0	bcgsc.ca	37	9	68729120	68729120	+	RNA	SNP	A	A	G	rs75336504	bycluster;byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
RABL6	55684	bcgsc.ca	37	9	139732331	139732331	+	Missense_Mutation	SNP	G	G	C	rs2811741	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	1	1	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141069885	141069885	+	RNA	SNP	A	A	C	rs62581043	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
COX1	5742	broad.mit.edu	37	MT	6849	6849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	67358	65135	1947	158	118
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11601	11601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	51844	49711	1916	167	50
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	12059	12059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	42267	40911	1332	18	5
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13422	13422	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	3660	3575	69	13	3
CYTB	0	bcgsc.ca	37	MT	14758	14758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15109	15109	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	18514	18228	276	2	8
SRPX	8406	broad.mit.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	GCA	-	rs35523939	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48676475	48676475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	1	1	0	0	0
FAM155B	27112	broad.mit.edu	37	X	68725179	68725181	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
ZMYM3	9203	ucsc.edu;bcgsc.ca	37	X	70467669	70467669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
GPRASP2	114928	broad.mit.edu	37	X	101971018	101971018	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
G6PD	2539	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153761190	153761190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	11	11	0	0	0
MIR5694	100847064	broad.mit.edu	37	10	122698966	122698967	+	RNA	INS	-	-	CTGCG	rs112046355		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
VWF	7450	broad.mit.edu	37	12	6132943	6132944	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
KRTAP4-5	85289	broad.mit.edu	37	17	39305775	39305776	+	In_Frame_Ins	INS	-	-	GGCAGCAGCTGGGGC	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
FADS6	283985	hgsc.bcm.edu	37	17	72889676	72889677	+	In_Frame_Ins	INS	-	-	GGCTCCGTAGGTTCCATC	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
DSTN	11034	broad.mit.edu	37	20	17581488	17581489	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
FLJ16171	0	broad.mit.edu	37	5	174383243	174383244	+	RNA	INS	-	-	CA	rs142168344		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
VARS	7407	hgsc.bcm.edu	37	6	31762843	31762844	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	0	0	0	0	0
