Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
AGMAT	79814	hgsc.bcm.edu	37	1	15911349	15911349	+	Silent	SNP	G	G	A	rs3737705	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	0	1	0	0
MST1P2	11209	bcgsc.ca	37	1	16972940	16972940	+	RNA	SNP	G	G	A	rs1970921	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	1	0	0	0
MST1P2	11209	bcgsc.ca	37	1	16973152	16973152	+	RNA	SNP	A	A	G	rs1970920	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	4	0	4	0	0
TRIM63	84676	hgsc.bcm.edu	37	1	26386772	26386772	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
PTGER3	5733	broad.mit.edu	37	1	71512493	71512493	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
HRNR	388697	broad.mit.edu;bcgsc.ca	37	1	152188140	152188140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152280081	152280081	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228526051	228526051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	2	2	0	0	0
PCNXL2	80003	bcgsc.ca	37	1	233225848	233225848	+	Silent	SNP	T	T	C	rs12059884	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
RYR2	6262	bcgsc.ca	37	1	237958589	237958589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	2	2	0	0	0
NPFFR1	64106	hgsc.bcm.edu	37	10	72014863	72014863	+	Silent	SNP	G	G	A	rs60225321	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	84745227	84745227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	2	2	0	0	0
PIK3AP1	118788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98386618	98386618	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
GPAM	57678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	113924340	113924340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118318731	118318731	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
ENO4	387712	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	118633606	118633606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
C11orf35	256329	hgsc.bcm.edu	37	11	556372	556372	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	0	1	0	0
CDHR5	53841	hgsc.bcm.edu	37	11	617593	617593	+	Missense_Mutation	SNP	G	G	C	rs137998609	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	37	0	37	0	0
MUC5B	727897	ucsc.edu;bcgsc.ca	37	11	1253942	1253942	+	Silent	SNP	T	T	C	rs908229	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1253969	1253969	+	Silent	SNP	A	A	G	rs72846370		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1267340	1267340	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1471882	1471882	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
PLCB3	5331	broad.mit.edu	37	11	64034712	64034712	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	35	35	0	0	0
GSTP1	2950	bcgsc.ca	37	11	67353579	67353579	+	Missense_Mutation	SNP	C	C	T	rs1138272	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	1	0	0	0
TENM4	26011	broad.mit.edu	37	11	78498081	78498081	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
C11orf92	399948	bcgsc.ca	37	11	111167792	111167792	+	RNA	SNP	T	T	G	rs10891245	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
SLCO1B7	338821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	21196449	21196449	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
SLC2A13	114134	hgsc.bcm.edu	37	12	40499118	40499118	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	2	0	2	0	0
TMEM19	55266	hgsc.bcm.edu;broad.mit.edu	37	12	72091182	72091182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	5	5	0	0	0
GALNT4	8693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	89916603	89916603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
C12orf65	91574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123738436	123738436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	29	15	14	0	0
TPTE2P6	374491	bcgsc.ca	37	13	25168555	25168555	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
TPTE2P6	374491	bcgsc.ca	37	13	25168558	25168558	+	RNA	SNP	T	T	G	rs202218369		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
PCDH20	64881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	61986775	61986775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
KLF5	688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	73636282	73636282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	16	16	0	0	0
LRRC16B	90668	broad.mit.edu	37	14	24527404	24527404	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
INSM2	84684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36004341	36004341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
SLC10A1	6554	broad.mit.edu	37	14	70246042	70246042	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
ELMSAN1	91748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	74191989	74191989	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
SAMD15	161394	bcgsc.ca	37	14	77845121	77845121	+	Missense_Mutation	SNP	A	A	G	rs2193595	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
CHGA	1113	bcgsc.ca	37	14	93401178	93401178	+	Silent	SNP	A	A	G	rs941581	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	67	29	38	0	0
APBA2	321	broad.mit.edu;bcgsc.ca	37	15	29393975	29393975	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
MFAP1	4236	broad.mit.edu	37	15	44116740	44116740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	5	5	0	0	0
SPG11	80208	broad.mit.edu	37	15	44858189	44858189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	27	27	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79058090	79058090	+	Missense_Mutation	SNP	A	A	G	rs2929158	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	32	30	2	0	0
PDE8A	5151	hgsc.bcm.edu;bcgsc.ca	37	15	85656649	85656650	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
PTX4	390667	hgsc.bcm.edu	37	16	1537601	1537601	+	Missense_Mutation	SNP	A	A	G	rs2667674	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2156447	2156447	+	Silent	SNP	G	G	A	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	21	18	3	0	0
FLYWCH1	84256	hgsc.bcm.edu	37	16	2980747	2980747	+	Missense_Mutation	SNP	C	C	T	rs201356969		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	7	3	4	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28844676	28844676	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	9	0	9	0	0
SEZ6L2	26470	hgsc.bcm.edu	37	16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	rs11649499	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88520086	88520086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
SMYD4	114826	bcgsc.ca	37	17	1684605	1684605	+	Missense_Mutation	SNP	G	G	T	rs58337165	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
HIC1	3090	hgsc.bcm.edu	37	17	1960974	1960974	+	Silent	SNP	C	C	T	rs77393586		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
OR1D5	8386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2966182	2966182	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
GSG2	83903	broad.mit.edu	37	17	3629267	3629267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	1	0	0	0
ATPAF2	91647	broad.mit.edu	37	17	17942265	17942265	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	2	1	1	0	0
KRTAP4-7	100132476	bcgsc.ca	37	17	39240737	39240737	+	Missense_Mutation	SNP	C	C	G	rs201389180		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
KRTAP4-7	100132476	bcgsc.ca	37	17	39240745	39240745	+	Missense_Mutation	SNP	A	A	G	rs199744933		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
NPTX1	4884	hgsc.bcm.edu	37	17	78449948	78449948	+	Missense_Mutation	SNP	C	C	T	rs144443274		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	0	1	0	0
POLI	11201	broad.mit.edu	37	18	51795958	51795960	+	In_Frame_Del	DEL	CGA	CGA	-	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
R3HDM4	91300	bcgsc.ca	37	19	899444	899444	+	Silent	SNP	C	C	T	rs2965284	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	3	3	0	0	0
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8595175	8595175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
RLN3	117579	bcgsc.ca	37	19	14141666	14141666	+	Missense_Mutation	SNP	G	G	T	rs78161395	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
OR7A10	390892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14951843	14951843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
SLC27A1	376497	hgsc.bcm.edu	37	19	17597661	17597661	+	Missense_Mutation	SNP	A	A	T	rs61743602	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	0	1	0	0
ZNF254	9534	hgsc.bcm.edu;mdanderson.org	37	19	24310744	24310744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	3	2	1	0	0
LRP3	4037	hgsc.bcm.edu	37	19	33698018	33698018	+	Missense_Mutation	SNP	C	C	T	rs11539586		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	53	27	25	0	1
SLC7A10	56301	broad.mit.edu	37	19	33699842	33699842	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
FFAR1	2864	broad.mit.edu;mdanderson.org	37	19	35843174	35843174	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
CATSPERG	57828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38845375	38845375	+	Silent	SNP	C	C	T	rs114967522		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
ZNF234	10780	bcgsc.ca	37	19	44660559	44660559	+	Missense_Mutation	SNP	G	G	T	rs151243299	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258619	48258619	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	299	158	141	0	0
SULT2B1	6820	broad.mit.edu	37	19	49100007	49100007	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	15	0	15	0	0
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49699903	49699903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	2	2	0	0	0
SLC6A16	28968	broad.mit.edu	37	19	49812163	49812163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
TSKS	60385	hgsc.bcm.edu	37	19	50249883	50249883	+	Missense_Mutation	SNP	G	G	A	rs142807989	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51172454	51172454	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
DPRX	503834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54140161	54140161	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
TMC4	147798	bcgsc.ca	37	19	54676763	54676763	+	Missense_Mutation	SNP	C	C	T	rs641738	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
ZNF814	730051	ucsc.edu	37	19	58384712	58384712	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	5	3	2	0	0
ZNF606	80095	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58500063	58500063	+	Silent	SNP	G	G	A	rs182994172	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	0	1	0	0
TMEM247	388946	ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
ASPRV1	151516	broad.mit.edu	37	2	70188562	70188562	+	Missense_Mutation	SNP	C	C	T	rs148290351	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	1	0	0	0
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84771405	84771405	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
XIRP2	129446	broad.mit.edu	37	2	168108439	168108439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
KCNE4	23704	broad.mit.edu;bcgsc.ca	37	2	223917881	223917881	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	3	3	0	0	0
WDFY1	57590	hgsc.bcm.edu	37	2	224809876	224809876	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628299	29628299	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	79	79	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29632784	29632784	+	RNA	SNP	C	C	G	rs6087299		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	5	2	3	0	0
IFT52	51098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42233641	42233641	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
SPATA25	128497	bcgsc.ca	37	20	44515559	44515559	+	Missense_Mutation	SNP	G	G	A	rs3827040	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	58450354	58450354	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
RGS19	10287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62705725	62705725	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36041978	36041978	+	Silent	SNP	A	A	G	rs7280973		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
U2AF1	7307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44524486	44524486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	75	56	19	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
COL6A2	1292	hgsc.bcm.edu	37	21	47552201	47552201	+	Missense_Mutation	SNP	C	C	T	rs117725825	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	340	139	201	0	0
MN1	4330	hgsc.bcm.edu	37	22	28194895	28194900	+	In_Frame_Del	DEL	TGCTGT	TGCTGT	-	rs75719175	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	TGCTGT	TGCTGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
TTC28	23331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28503713	28503713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
RHBDD3	25807	bcgsc.ca	37	22	29656389	29656389	+	Silent	SNP	G	G	T	rs2231398	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	22	22	0	0	0
SEC14L4	284904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30887672	30887672	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
CARD10	29775	hgsc.bcm.edu	37	22	37915145	37915145	+	Silent	SNP	C	C	T	rs79861380		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
TCF20	6942	broad.mit.edu	37	22	42609400	42609400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	1	0	0	0
PNPLA3	80339	bcgsc.ca	37	22	44322922	44322922	+	Missense_Mutation	SNP	T	T	G	rs2076213	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
PNPLA3	80339	bcgsc.ca	37	22	44322970	44322970	+	Missense_Mutation	SNP	G	G	T	rs2076212	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
CNTN4	152330	broad.mit.edu;bcgsc.ca	37	3	3030028	3030028	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
LRRC3B	116135	bcgsc.ca	37	3	26751493	26751493	+	Silent	SNP	A	A	T	rs35497952	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
FAM3D	131177	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58631299	58631299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64536626	64536626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195508392	195508392	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195594805	195594805	+	Silent	SNP	A	A	G	rs1056749	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	5	3	2	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	12	6	6	0	0
WHSC1	7468	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1905977	1905977	+	Missense_Mutation	SNP	G	G	A	rs192103195		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	0	1	0	0
WFS1	7466	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6302448	6302448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	3	1	2	0	0
WFS1	7466	bcgsc.ca	37	4	6303354	6303354	+	Missense_Mutation	SNP	G	G	A	rs734312	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	4	4	0	0	0
GABRB1	2560	bcgsc.ca	37	4	47322219	47322219	+	Silent	SNP	C	C	A	rs6284	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537267	88537267	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122853648	122853648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
INTU	27152	bcgsc.ca	37	4	128584580	128584580	+	Silent	SNP	G	G	A	rs4833380	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138452025	138452025	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
TRIM2	23321	bcgsc.ca	37	4	154216710	154216710	+	Silent	SNP	G	G	A	rs893805	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
DCHS2	54798	bcgsc.ca	37	4	155241572	155241572	+	Missense_Mutation	SNP	G	G	A	rs11935573	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
IRX4	50805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1879909	1879909	+	Missense_Mutation	SNP	C	C	A	rs200961337	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16671084	16671084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
C9	735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	39308392	39308392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
MROH2B	133558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41032905	41032905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	13	6	7	0	0
PANK3	79646	ucsc.edu	37	5	167988433	167988433	+	Missense_Mutation	SNP	T	T	A	rs77612793	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	4	4	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
HIST1H2BA	255626	bcgsc.ca	37	6	25727334	25727334	+	Silent	SNP	C	C	T	rs4712961	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
COL21A1	81578	bcgsc.ca	37	6	56044578	56044578	+	Silent	SNP	T	T	C	rs2038149	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
EEF1A1	1915	bcgsc.ca	37	6	74227940	74227940	+	Silent	SNP	A	A	C	rs71481399	bycluster	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	5579	5571	1	6	1
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20418693	20418693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634630	30634630	+	Silent	SNP	G	G	C	rs2529438	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	3	1	2	0	0
EPDR1	54749	hgsc.bcm.edu	37	7	37960577	37960577	+	Silent	SNP	C	C	A	rs147877097		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	1	0	0	0
GLI3	2737	hgsc.bcm.edu	37	7	42005050	42005050	+	Missense_Mutation	SNP	G	G	T	rs147343252		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	3	3	0	0	0
MYO1G	64005	hgsc.bcm.edu;mdanderson.org	37	7	45002430	45002430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
ZNF775	285971	broad.mit.edu	37	7	150093920	150093920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	2	2	0	0	0
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150873649	150873649	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	157041208	157041208	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	11	11	0	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	114186110	114186110	+	Missense_Mutation	SNP	G	G	A	rs201775807	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
OPLAH	26873	hgsc.bcm.edu	37	8	145107390	145107390	+	Missense_Mutation	SNP	C	C	T	rs185836803		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	30	14	16	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	3	0	3	0	0
UBAP2	55833	bcgsc.ca	37	9	33941759	33941759	+	Missense_Mutation	SNP	T	T	C	rs307658	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	3	3	0	0	0
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35716437	35716437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	7	2	5	0	0
VPS13A	23230	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79954597	79954597	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
ALG2	85365	hgsc.bcm.edu	37	9	101984160	101984160	+	Missense_Mutation	SNP	C	C	G	rs180849348	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	5	0	5	0	0
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	GCT	-	rs34222232	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
GLRA2	2742	bcgsc.ca	37	X	14627144	14627144	+	Silent	SNP	T	T	C	rs2229963	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
IL13RA1	3597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	117925779	117925779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	12	12	0	0	0
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129155104	129155104	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	2	1	1	0	0
MAP7D3	79649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135313873	135313873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	1	0	1	0	0
PARD6A	50855	broad.mit.edu	37	16	67695546	67695547	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
TMEM247	388946	hgsc.bcm.edu	37	2	46707846	46707847	+	In_Frame_Ins	INS	-	-	GAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGG	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327915	16327916	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
SND1	27044	hgsc.bcm.edu	37	7	127292433	127292434	+	In_Frame_Ins	INS	-	-	TCCTCCGCGCAGAGCGGCGGC	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504670	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	0	0	0	0	0
