Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ACAP3	116983	broad.mit.edu;bcgsc.ca	37	1	1230833	1230833	+	Missense_Mutation	SNP	G	G	T	rs144585204		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614415	6614415	+	Missense_Mutation	SNP	A	A	G	rs6693400		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
SRM	6723	hgsc.bcm.edu	37	1	11119899	11119899	+	Silent	SNP	T	T	C	rs7545802		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
DHRS3	9249	bcgsc.ca	37	1	12640650	12640650	+	Silent	SNP	C	C	T	rs11540058	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ESPNP	284729	ucsc.edu	37	1	17034167	17034167	+	RNA	SNP	G	G	A	rs2988287	by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZCCHC17	51538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	31819587	31819587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
LEPR	3953	ucsc.edu;bcgsc.ca	37	1	66087142	66087142	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233578	153233578	+	Silent	SNP	C	C	T	rs1143389	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
FMO3	2328	bcgsc.ca	37	1	171083226	171083226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CAPN9	10753	bcgsc.ca	37	1	230903350	230903350	+	Silent	SNP	T	T	C	rs3828126	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27322227	27322227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
FLJ31813	0	broad.mit.edu	37	10	51826259	51826259	+	RNA	DEL	A	A	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CNNM1	26507	hgsc.bcm.edu	37	10	101089772	101089772	+	Silent	SNP	C	C	A	rs112168939	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
EMX2	2018	bcgsc.ca	37	10	119305202	119305202	+	Silent	SNP	C	C	A	rs8192642	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PRKCDBP	112464	hgsc.bcm.edu	37	11	6341365	6341365	+	Silent	SNP	C	C	T	rs11544764	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PRKCDBP	112464	hgsc.bcm.edu	37	11	6341397	6341397	+	Missense_Mutation	SNP	C	C	T	rs10839551	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
NAALADL1	10004	bcgsc.ca	37	11	64813685	64813685	+	Missense_Mutation	SNP	G	G	C	rs36053340	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
NADSYN1	55191	bcgsc.ca	37	11	71169547	71169547	+	Missense_Mutation	SNP	G	G	C	rs2276360	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
GLB1L3	112937	broad.mit.edu	37	11	134147265	134147265	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
WNK1	65125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	966392	966392	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14578126	14578126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PLBD1	79887	hgsc.bcm.edu	37	12	14720583	14720583	+	Silent	SNP	T	T	C	rs7954623		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
RECQL	5965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21624011	21624011	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CTDSP2	10106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58217464	58217464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
GAS2L3	283431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101005850	101005850	+	Missense_Mutation	SNP	G	G	C	rs143611209	byfrequency;alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
RIMBP2	23504	hgsc.bcm.edu	37	12	130921471	130921471	+	Silent	SNP	T	T	C	rs2292663	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
MEDAG	84935	hgsc.bcm.edu	37	13	31480827	31480827	+	Missense_Mutation	SNP	A	A	G	rs9531945	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PLEKHH1	57475	broad.mit.edu	37	14	68045912	68045912	+	Missense_Mutation	SNP	G	G	A	rs201225859		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70712731	70712731	+	RNA	SNP	T	T	G	rs55760949	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
TLE3	7090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	70349954	70349954	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
MESDC1	59274	hgsc.bcm.edu	37	15	81295416	81295416	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
MESP2	145873	hgsc.bcm.edu	37	15	90320146	90320146	+	Silent	SNP	G	G	A	rs28546919	bycluster	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
MESP2	145873	hgsc.bcm.edu	37	15	90320149	90320149	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
RCCD1	91433	hgsc.bcm.edu	37	15	91499986	91499986	+	Missense_Mutation	SNP	G	G	T	rs4932380		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
FBXL16	146330	bcgsc.ca	37	16	746914	746914	+	Silent	SNP	G	G	A	rs4984915	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
C16orf90	646174	bcgsc.ca	37	16	3544745	3544745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	27523174	27523190	+	Frame_Shift_Del	DEL	CGTTTAAATTCCTTCAG	CGTTTAAATTCCTTCAG	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	CGTTTAAATTCCTTCAG	CGTTTAAATTCCTTCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PYCARD	29108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31213958	31213958	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
NCOR1	9611	hgsc.bcm.edu	37	17	16097787	16097787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21906677	21906677	+	RNA	SNP	C	C	A	rs12449661	bycluster;byfrequency;byhapmap	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
TBC1D3P5	440419	broad.mit.edu;ucsc.edu	37	17	25753502	25753502	+	RNA	SNP	C	C	T	rs35094692	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	29661949	29661949	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
LOC440434	0	bcgsc.ca	37	17	36398142	36398142	+	RNA	SNP	T	T	A	rs138180351		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254417	42254417	+	Missense_Mutation	SNP	A	A	G	rs7212854	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
LOC644172	0	bcgsc.ca	37	17	43678742	43678742	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
EFCAB13	124989	bcgsc.ca	37	17	45452257	45452257	+	Nonsense_Mutation	SNP	A	A	T	rs74969489	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
VEZF1	7716	bcgsc.ca	37	17	56056604	56056604	+	Silent	SNP	T	T	C	rs138088904	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
TBC1D3P1-DHX40P1	653645	broad.mit.edu	37	17	58066651	58066651	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CTDP1	9150	hgsc.bcm.edu	37	18	77440128	77440128	+	Missense_Mutation	SNP	T	T	G	rs17855830	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
KISS1R	84634	hgsc.bcm.edu	37	19	920642	920642	+	Missense_Mutation	SNP	T	T	A	rs350132		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
APC2	10297	hgsc.bcm.edu	37	19	1467684	1467684	+	Silent	SNP	A	A	C	rs265273	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217919	4217919	+	Missense_Mutation	SNP	G	G	A	rs142674065		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	rs890853	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
LIPE	3991	hgsc.bcm.edu	37	19	42906024	42906024	+	Silent	SNP	G	G	A	rs36104839	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PRR24	255783	hgsc.bcm.edu	37	19	47778412	47778412	+	Missense_Mutation	SNP	G	G	T	rs1055218		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
TULP2	7288	bcgsc.ca	37	19	49400634	49400634	+	Missense_Mutation	SNP	C	C	T	rs7260579	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
SIGLEC16	400709	bcgsc.ca	37	19	50474892	50474892	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
MYH14	79784	hgsc.bcm.edu	37	19	50713713	50713713	+	Missense_Mutation	SNP	C	C	A	rs590722		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
KLK1	3816	bcgsc.ca	37	19	51323501	51323501	+	Silent	SNP	A	A	G	rs1054713	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PRKCG	5582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54393237	54393237	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
LILRP2	79166	broad.mit.edu	37	19	55224692	55224692	+	RNA	SNP	T	T	C	rs17207369	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391826	3391826	+	Silent	SNP	C	C	T	rs11127423		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	31572920	31572920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ARHGEF33	100271715	hgsc.bcm.edu	37	2	39187519	39187519	+	Silent	SNP	A	A	G	rs958412		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
RNF149	284996	hgsc.bcm.edu	37	2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	rs11123868	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682226	106682226	+	Silent	SNP	T	T	C	rs4271786		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
GPR39	2863	bcgsc.ca	37	2	133174764	133174764	+	Missense_Mutation	SNP	C	C	T	rs2241764	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CHPF	79586	bcgsc.ca	37	2	220404648	220404648	+	Silent	SNP	C	C	T	rs1043833	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PRR21	643905	bcgsc.ca	37	2	240982228	240982228	+	Missense_Mutation	SNP	C	C	T	rs10439373	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ANO7	50636	bcgsc.ca	37	2	242129487	242129487	+	Silent	SNP	G	G	T	rs11695874	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29632680	29632680	+	RNA	SNP	G	G	A	rs4892355		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
FAM83C	128876	bcgsc.ca	37	20	33875562	33875562	+	Silent	SNP	C	C	T	rs141723001	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
MED15	51586	broad.mit.edu	37	22	20918916	20918918	+	In_Frame_Del	DEL	CAG	CAG	-	rs72277642	alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
MIR650	723778	bcgsc.ca	37	22	23165624	23165624	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
TMPRSS6	164656	bcgsc.ca	37	22	37485724	37485724	+	Missense_Mutation	SNP	T	T	C	rs2235324	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CYP2D7P1	1564	broad.mit.edu	37	22	42538029	42538029	+	RNA	SNP	A	A	G	rs1058167	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CIDECP	152302	broad.mit.edu	37	3	10065426	10065426	+	RNA	SNP	C	C	T	rs6803517	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ATP6V1A	523	broad.mit.edu;bcgsc.ca	37	3	113528258	113528258	+	Missense_Mutation	SNP	G	G	A	rs140346248	alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ST6GAL1	6480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186793513	186793513	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388819	1388819	+	Missense_Mutation	SNP	T	T	C	rs144797159	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CRMP1	1400	hgsc.bcm.edu	37	4	5894586	5894586	+	Silent	SNP	G	G	A	rs143304363		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
LOC550113	0	bcgsc.ca;mdanderson.org	37	4	68928345	68928345	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662248	77662248	+	Silent	SNP	G	G	A	rs60216375	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
C4orf32	132720	hgsc.bcm.edu	37	4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	rs10002700		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
LRRC14B	389257	hgsc.bcm.edu	37	5	191992	191992	+	Silent	SNP	G	G	A	rs34710524	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633042	6633042	+	Silent	SNP	C	C	T	rs10062086	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
GABRA6	2559	broad.mit.edu	37	5	161128694	161128694	+	Missense_Mutation	SNP	C	C	G	rs150186322		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
HIST1H4E	8367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26204877	26204877	+	Missense_Mutation	SNP	C	C	T	rs201304438	alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
HLA-C	3107	bcgsc.ca	37	6	31239449	31239449	+	Missense_Mutation	SNP	C	C	G	rs28626310	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CAPN11	11131	broad.mit.edu;bcgsc.ca	37	6	44137262	44137262	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72945399	72945399	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72945409	72945409	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
KCNQ5	56479	hgsc.bcm.edu	37	6	73332040	73332040	+	Silent	SNP	C	C	G	rs3734212	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
FAM26F	441168	hgsc.bcm.edu	37	6	116783390	116783390	+	Silent	SNP	A	A	G	rs10784	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
EYA4	2070	bcgsc.ca	37	6	133849868	133849868	+	Silent	SNP	C	C	T	rs142721902	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
RAET1G	353091	bcgsc.ca	37	6	150240829	150240829	+	Missense_Mutation	SNP	G	G	C	rs9397449	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
TBP	6908	mdanderson.org	37	6	170871013	170871013	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CCDC129	223075	bcgsc.ca	37	7	31682453	31682453	+	Missense_Mutation	SNP	C	C	T	rs4141001	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
POLD2	5425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44156093	44156093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
VOPP1	81552	hgsc.bcm.edu	37	7	55639970	55639970	+	Silent	SNP	G	G	A	rs200450690		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
KCP	375616	hgsc.bcm.edu	37	7	128550681	128550681	+	Splice_Site	DEL	C	C	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZNF282	8427	broad.mit.edu	37	7	148892715	148892715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZNF775	285971	hgsc.bcm.edu	37	7	150094851	150094851	+	Missense_Mutation	SNP	A	A	G	rs13225910		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
XKR5	389610	hgsc.bcm.edu	37	8	6692968	6692968	+	Silent	SNP	C	C	T	rs2977806	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZNF703	80139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	37554967	37554967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	214706	214706	+	Missense_Mutation	SNP	G	G	C	rs540473	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
KIAA0020	9933	bcgsc.ca	37	9	2811505	2811505	+	Silent	SNP	G	G	A	rs2270888	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5969127	5969127	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ATP8B5P	158381	broad.mit.edu	37	9	35450411	35450411	+	RNA	DEL	T	T	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
SHB	6461	hgsc.bcm.edu	37	9	38068532	38068532	+	Silent	SNP	A	A	G	rs3750444	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
LOC642236	0	bcgsc.ca	37	9	68430343	68430343	+	RNA	SNP	G	G	T	rs11510468	alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
LOC100128593	0	bcgsc.ca	37	9	139642999	139642999	+	RNA	SNP	G	G	A	rs111432548		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
tRNA-Ala	0	bcgsc.ca	37	MT	5628	5628	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CYTB	0	broad.mit.edu	37	MT	15092	15092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
SSX8	280659	bcgsc.ca	37	X	52655670	52655670	+	RNA	SNP	G	G	A	rs36117392		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53440047	53440047	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZXDB	158586	hgsc.bcm.edu	37	X	57618845	57618845	+	Missense_Mutation	SNP	G	G	A	rs199513692		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZXDB	158586	hgsc.bcm.edu	37	X	57618870	57618870	+	Missense_Mutation	SNP	G	G	A	rs189164178		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
ZXDA	7789	hgsc.bcm.edu	37	X	57936462	57936462	+	Silent	SNP	G	G	A	rs60293829	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PIN4	5303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71417357	71417357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
NSDHL	50814	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152031231	152031231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
RSU1P2	100133308	broad.mit.edu	37	10	45647622	45647623	+	RNA	INS	-	-	TTG	rs3041509	bycluster;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PCGF6	84108	hgsc.bcm.edu	37	10	105110740	105110741	+	In_Frame_Ins	INS	-	-	GGAGGC	rs113359610		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
CHD8	57680	hgsc.bcm.edu;bcgsc.ca	37	14	21863156	21863157	+	Frame_Shift_Ins	INS	-	-	CTCTATCTTCATTTGTTCT	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699367	26699368	+	Frame_Shift_Ins	INS	-	-	C	rs34421136		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
MCC	4163	broad.mit.edu	37	5	112824048	112824049	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
FUCA2	2519	hgsc.bcm.edu	37	6	143832707	143832708	+	In_Frame_Ins	INS	-	-	GCAGCA	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
AVL9	23080	broad.mit.edu	37	7	32535342	32535343	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
RBMXL3	139804	hgsc.bcm.edu	37	X	114425192	114425193	+	In_Frame_Ins	INS	-	-	CCCAACGCCCACAGCGGAGGCCGCTCG	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
UVRAG	7405	hgsc.bcm.edu	37	11	75526481	75526482	+	Missense_Mutation	DNP	CC	CC	AG	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	0	0	0	0	0
