Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
UBR4	23352	hgsc.bcm.edu	37	1	19518806	19518806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
LRP8	7804	hgsc.bcm.edu	37	1	53793511	53793511	+	Missense_Mutation	SNP	T	T	C	rs4926972		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
GSTM5	2949	bcgsc.ca	37	1	110257590	110257590	+	Silent	SNP	T	T	C	rs2229059	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
PTGFRN	5738	hgsc.bcm.edu	37	1	117452869	117452869	+	Missense_Mutation	SNP	C	C	G	rs77292583		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	0	1	0	0
NIT1	4817	bcgsc.ca	37	1	161089175	161089175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	7	7	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
PTGS2	5743	bcgsc.ca	37	1	186648197	186648197	+	Silent	SNP	C	C	G	rs5277	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
GLRX2	51022	hgsc.bcm.edu	37	1	193074486	193074486	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	0	1	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504669	+	Silent	SNP	G	G	A	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
C1orf229	388759	hgsc.bcm.edu	37	1	247274899	247274899	+	Missense_Mutation	SNP	A	A	G	rs73135916		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
ASB13	79754	broad.mit.edu	37	10	5690971	5690971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
AGAP6	414189	broad.mit.edu	37	10	51748584	51748584	+	Missense_Mutation	SNP	A	A	G	rs75102885		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	15	7	8	0	0
ASAH2	56624	broad.mit.edu;bcgsc.ca	37	10	51974561	51974561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
PCDH15	65217	hgsc.bcm.edu	37	10	55587197	55587197	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
BMS1P4	729096	broad.mit.edu	37	10	75490217	75490217	+	RNA	SNP	T	T	C	rs11814282	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	2	2	0	0	0
DOCK1	1793	broad.mit.edu	37	10	128796494	128796494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
GLRX3	10539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	131969900	131969900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	12	8	4	0	0
GPR123	84435	hgsc.bcm.edu	37	10	134942340	134942340	+	Silent	SNP	C	C	T	rs10776696	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012430	135012430	+	Silent	SNP	T	T	C	rs3008389	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	0	1	0	0
ZNF511	118472	hgsc.bcm.edu	37	10	135122507	135122507	+	Silent	SNP	G	G	A	rs3008357		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
IRF7	3665	hgsc.bcm.edu	37	11	615103	615103	+	Silent	SNP	G	G	A	rs113083699		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu;bcgsc.ca	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
OR52M1	119772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4567166	4567166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
ARL2-SNX15	0	bcgsc.ca	37	11	64807136	64807136	+	RNA	SNP	G	G	A	rs2670910	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	1	0	0	0
DYNC2H1	79659	bcgsc.ca	37	11	103124135	103124135	+	Silent	SNP	T	T	G	rs11225634	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
ZNF385A	25946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54778302	54778302	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
RCBTB1	55213	bcgsc.ca	37	13	50141345	50141345	+	Missense_Mutation	SNP	G	G	A	rs4942848	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
FRMD6	122786	bcgsc.ca	37	14	52156572	52156572	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
FRMD6	122786	bcgsc.ca	37	14	52156575	52156575	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
FRMD6	122786	bcgsc.ca	37	14	52156605	52156605	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
FRMD6	122786	bcgsc.ca	37	14	52156626	52156626	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
L3HYPDH	112849	hgsc.bcm.edu	37	14	59950910	59950910	+	Missense_Mutation	SNP	A	A	G	rs17096291	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	2	2	0	0	0
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81737202	81737202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88652129	88652129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
WFIKKN1	117166	broad.mit.edu	37	16	683832	683832	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2049882	2049882	+	Missense_Mutation	SNP	G	G	C	rs61746014		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	3	2	1	0	0
RRN3	54700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	15168670	15168670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	1	0	0	0
ZNF48	197407	hgsc.bcm.edu	37	16	30407177	30407177	+	Missense_Mutation	SNP	A	A	G	rs7200143		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
SLC6A10P	386757	bcgsc.ca	37	16	32890622	32890622	+	RNA	SNP	T	T	G	rs689942	bycluster	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
CX3CL1	6376	ucsc.edu	37	16	57416276	57416276	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
DHODH	1723	broad.mit.edu	37	16	72056283	72056283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	4	4	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
GSG2	83903	hgsc.bcm.edu	37	17	3627619	3627619	+	Silent	SNP	C	C	T	rs1185511	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
VAT1	10493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41170156	41170156	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	28	28	0	0	0
CDK5RAP3	80279	ucsc.edu;bcgsc.ca	37	17	46053334	46053334	+	Silent	SNP	A	A	G	rs202125432	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	36	36	0	0	0
UTP18	51096	broad.mit.edu;bcgsc.ca	37	17	49338205	49338205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	1	0	0	0
PLEKHM1P	440456	bcgsc.ca	37	17	62810914	62810914	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
PGS1	9489	hgsc.bcm.edu	37	17	76374837	76374837	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
KCNG2	26251	hgsc.bcm.edu	37	18	77623898	77623898	+	Silent	SNP	C	C	T	rs147089723	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
ABCA7	10347	ucsc.edu	37	19	1047002	1047002	+	Silent	SNP	A	A	G	rs3752234	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	2	0	2	0	0
ATP8B3	148229	bcgsc.ca	37	19	1784890	1784890	+	Silent	SNP	A	A	G	rs3764605	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	1	0	0	0
ADAT3	113179	hgsc.bcm.edu	37	19	1912251	1912251	+	Missense_Mutation	SNP	A	A	G	rs150715312	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
ANKLE1	126549	hgsc.bcm.edu	37	19	17392977	17392977	+	Silent	SNP	C	C	T	rs77247570		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
HAPLN4	404037	hgsc.bcm.edu	37	19	19369489	19369489	+	Silent	SNP	T	T	C	rs80354663	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
CYP2B7P1	1556	broad.mit.edu;bcgsc.ca	37	19	41447447	41447447	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205288	48205288	+	Silent	SNP	G	G	A	rs8100472		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
KCNA7	3743	hgsc.bcm.edu	37	19	49575618	49575618	+	Silent	SNP	A	A	G	rs71352730	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
SIGLEC5	8778	bcgsc.ca	37	19	52132662	52132662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
LILRA1	11024	broad.mit.edu	37	19	55106239	55106239	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
EFR3B	22979	bcgsc.ca	37	2	25354712	25354712	+	Missense_Mutation	SNP	G	G	T	rs200151921		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
ANKRD53	79998	hgsc.bcm.edu	37	2	71206267	71206267	+	Missense_Mutation	SNP	G	G	A	rs57527165	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
MRPS5	64969	hgsc.bcm.edu	37	2	95787483	95787483	+	Silent	SNP	C	C	A	rs114292623	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
PIKFYVE	200576	bcgsc.ca	37	2	209212707	209212707	+	Silent	SNP	G	G	A	rs2304545	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
ERBB4	2066	bcgsc.ca	37	2	212251864	212251864	+	Silent	SNP	T	T	C	rs3748962	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
TRIP12	9320	bcgsc.ca	37	2	230668858	230668858	+	Silent	SNP	T	T	C	rs13018957	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	2	2	0	0	0
ALPPL2	251	hgsc.bcm.edu	37	2	233274475	233274475	+	Missense_Mutation	SNP	C	C	A	rs56080708	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
ANO7	50636	hgsc.bcm.edu	37	2	242157776	242157776	+	Silent	SNP	C	C	G	rs201381970		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
CST3	1471	hgsc.bcm.edu	37	20	23618488	23618488	+	Silent	SNP	G	G	A	rs1055084		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	119	48	71	0	0
FRG1B	284802	bcgsc.ca	37	20	29628205	29628205	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628215	29628215	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628229	29628229	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628299	29628299	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	70	70	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29632784	29632784	+	RNA	SNP	C	C	G	rs6087299		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	6	1	5	0	0
FRG1B	284802	bcgsc.ca	37	20	29632806	29632806	+	RNA	SNP	T	T	C	rs6087300	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	9	9	0	0	0
SOGA1	140710	broad.mit.edu	37	20	35414904	35414904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
NCOA3	8202	hgsc.bcm.edu	37	20	46279863	46279863	+	Silent	SNP	G	G	A	rs141008500	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	4	4	0	0	0
GATA5	140628	hgsc.bcm.edu	37	20	61050495	61050495	+	Missense_Mutation	SNP	G	G	A	rs112701160		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A	rs75570150		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	102	101	1	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	113	112	1	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
KRTAP10-5	386680	hgsc.bcm.edu	37	21	45999661	45999661	+	Silent	SNP	C	C	T	rs7510443	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
MICAL3	57553	hgsc.bcm.edu	37	22	18347738	18347738	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780079	20780079	+	Silent	SNP	C	C	T	rs185252842		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28194747	28194747	+	Silent	SNP	C	C	T	rs45554336	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
MN1	4330	broad.mit.edu	37	22	28194910	28194912	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28194933	28194933	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1680	19	1660	0	1
MN1	4330	hgsc.bcm.edu	37	22	28194936	28194936	+	Silent	SNP	C	C	T	rs45597040	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	22	17	5	0	0
CARD10	29775	hgsc.bcm.edu	37	22	37915145	37915145	+	Silent	SNP	C	C	T	rs79861380		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
FBLN2	2199	ucsc.edu	37	3	13612286	13612286	+	Missense_Mutation	SNP	A	A	G	rs28587534	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
DALRD3	55152	hgsc.bcm.edu	37	3	49055839	49055839	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
CHDH	55349	hgsc.bcm.edu	37	3	53857917	53857917	+	Missense_Mutation	SNP	T	T	G	rs9001	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
SNTN	132203	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	63649755	63649755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
DGKQ	1609	hgsc.bcm.edu	37	4	962100	962100	+	Silent	SNP	G	G	A	rs76581432		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	1	0	0	0
SLC26A1	10861	hgsc.bcm.edu	37	4	985372	985372	+	Silent	SNP	C	C	T	rs36084010	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	0	1	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	25	9	16	0	0
ADRA2C	152	broad.mit.edu	37	4	3769013	3769013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
GPR78	27201	hgsc.bcm.edu	37	4	8583212	8583212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
DHX15	1665	bcgsc.ca	37	4	24556528	24556528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	4	4	0	0	0
LPHN3	23284	broad.mit.edu	37	4	62897212	62897212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	2	2	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
PRDM8	56978	hgsc.bcm.edu	37	4	81123603	81123603	+	Silent	SNP	G	G	T	rs6831357	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536535	88536535	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
C4orf27	54969	hgsc.bcm.edu	37	4	170678999	170678999	+	Silent	SNP	G	G	C	rs61997073	byfrequency;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	2	0	2	0	0
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	101816044	101816044	+	Silent	SNP	G	G	A	rs143064096	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	6	3	3	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573834	140573834	+	Missense_Mutation	SNP	C	C	T	rs17844632		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	7	7	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	2	0	2	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	1	0	0	0
C6orf136	221545	hgsc.bcm.edu	37	6	30615244	30615244	+	Missense_Mutation	SNP	G	G	A	rs28360037	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
DNAH8	1769	hgsc.bcm.edu;bcgsc.ca	37	6	38813530	38813530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
EEF1A1	1915	broad.mit.edu	37	6	74228721	74228721	+	Silent	SNP	G	G	A	rs7797365	bycluster	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1147	1144	1	2	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271952	132271952	+	Missense_Mutation	SNP	G	G	C	rs7451102		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271959	132271959	+	Silent	SNP	T	T	G	rs12206231		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271980	132271980	+	Silent	SNP	T	T	G	rs6934749		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
MAP7	9053	hgsc.bcm.edu	37	6	136683828	136683828	+	Missense_Mutation	SNP	A	A	G	rs80342066	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
GINM1	116254	hgsc.bcm.edu	37	6	149887586	149887586	+	Silent	SNP	G	G	A	rs11547034		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	0	1	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
VWDE	221806	hgsc.bcm.edu	37	7	12443312	12443312	+	Missense_Mutation	SNP	C	C	T	rs139879021		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
FKBP9	11328	hgsc.bcm.edu	37	7	32997323	32997323	+	Silent	SNP	G	G	A	rs141020449	by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
PMS2P5	5383	ucsc.edu;bcgsc.ca	37	7	74306962	74306962	+	RNA	SNP	G	G	C	rs201591143	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	0	1	0	0
MEPCE	56257	hgsc.bcm.edu	37	7	100027763	100027763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	1	0	0	0
NKX2-6	137814	hgsc.bcm.edu	37	8	23560484	23560484	+	Missense_Mutation	SNP	G	G	T	rs143039156		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
KCNK9	51305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	140715144	140715144	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144996987	144996987	+	Silent	SNP	G	G	A	rs80143277	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	9	5	4	0	0
C8orf82	414919	hgsc.bcm.edu	37	8	145754272	145754272	+	Missense_Mutation	SNP	G	G	A	rs75220950	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	9	0	9	0	0
BAG1	573	hgsc.bcm.edu	37	9	33264540	33264540	+	Missense_Mutation	SNP	C	C	G	rs1071545		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	1	0	1	0	0
SPATA31E1	286234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90499864	90499864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
MEGF9	1955	hgsc.bcm.edu	37	9	123476303	123476303	+	Missense_Mutation	SNP	A	A	C	rs7861158	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
NOTCH1	4851	hgsc.bcm.edu	37	9	139417333	139417333	+	Silent	SNP	G	G	A	rs61751557	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
C9orf172	389813	hgsc.bcm.edu	37	9	139740174	139740174	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
C9orf172	389813	hgsc.bcm.edu	37	9	139740195	139740195	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
CACNA1B	774	hgsc.bcm.edu	37	9	140917779	140917779	+	Missense_Mutation	SNP	G	G	T	rs7873074	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
COX1	5742	broad.mit.edu	37	MT	6849	6849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	145634	40201	105073	255	105
COX2	5743	broad.mit.edu;bcgsc.ca	37	MT	7994	7994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	188136	46093	141937	43	61
XGPY2	100132596	bcgsc.ca	37	X	2692708	2692708	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	27999220	27999220	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
ANO4	121601	broad.mit.edu	37	12	101368641	101368642	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388398	1388399	+	Frame_Shift_Ins	INS	-	-	CCTGCTCATGTGCCCATGTGGAGTGCCCG	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
KIAA1211	57482	hgsc.bcm.edu	37	4	57180576	57180577	+	In_Frame_Ins	INS	-	-	GGAGCGGAG	rs138358443	by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327915	16327916	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
AVL9	23080	broad.mit.edu	37	7	32535342	32535343	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
VARS	7407	hgsc.bcm.edu	37	6	31762843	31762844	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	0	0	0	0	0
