Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ANKRD65	441869	broad.mit.edu	37	1	1354515	1354515	+	Missense_Mutation	SNP	C	C	G	rs904589		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	1	0	0	0
ANKRD65	441869	broad.mit.edu	37	1	1354570	1354570	+	Silent	SNP	C	C	T	rs191154418	by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	1	0	0	0
PRDM16	63976	hgsc.bcm.edu	37	1	3329229	3329229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
PRAMEF4	400735	ucsc.edu	37	1	12939904	12939904	+	Missense_Mutation	SNP	A	A	C	rs77146569	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ESPNP	284729	ucsc.edu	37	1	17023126	17023126	+	RNA	SNP	C	C	G	rs2610633	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
GNL2	29889	broad.mit.edu	37	1	38048389	38048389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	42047867	42047867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
MAST2	23139	bcgsc.ca	37	1	46476587	46476587	+	Missense_Mutation	SNP	T	T	G	rs11211247	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	3	3	0	0	0
MKNK1	8569	broad.mit.edu	37	1	47028362	47028362	+	Missense_Mutation	SNP	C	C	T	rs55791614	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	6	6	0	0	0
SSBP3	23648	broad.mit.edu	37	1	54871665	54871665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	11	11	0	0	0
TCHH	7062	broad.mit.edu	37	1	152084234	152084234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	3	0	3	0	0
CR1	1378	bcgsc.ca	37	1	207787796	207787796	+	Missense_Mutation	SNP	T	T	C	rs61822976		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	1	0	0	0
NSL1	25936	broad.mit.edu	37	1	212965096	212965096	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
JMJD4	65094	hgsc.bcm.edu	37	1	227923081	227923081	+	Missense_Mutation	SNP	G	G	A	rs7419238		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504669	+	Silent	SNP	G	G	A	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
TARBP1	6894	hgsc.bcm.edu	37	1	234601455	234601456	+	Splice_Site	DEL	CT	CT	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
KIF26B	55083	hgsc.bcm.edu	37	1	245851609	245851609	+	Missense_Mutation	SNP	C	C	G	rs150834033	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	0	1	0	0
HECTD2	143279	hgsc.bcm.edu	37	10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	rs7081569	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	0	1	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	2	0	2	0	0
PPRC1	23082	hgsc.bcm.edu	37	10	103892888	103892888	+	Silent	SNP	G	G	T	rs34756593	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	2	0	2	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	12	0	12	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	1	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643216	1643216	+	Silent	SNP	C	C	T	rs184923323	by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643255	1643255	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643258	1643258	+	Silent	SNP	C	C	T	rs28696103		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
TMEM132A	54972	hgsc.bcm.edu	37	11	60701987	60701987	+	Silent	SNP	G	G	A	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	27	2	25	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	147	0	147	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498671	71498671	+	Missense_Mutation	SNP	G	G	C	rs12283346	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
MAML2	84441	broad.mit.edu	37	11	95825221	95825221	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ROBO4	54538	broad.mit.edu	37	11	124756982	124756982	+	Missense_Mutation	SNP	G	G	A	rs138481093	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	6	6	0	0	0
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	128857997	128857997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
TAS2R43	259289	hgsc.bcm.edu	37	12	11244814	11244814	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
SRRM4	84530	hgsc.bcm.edu	37	12	119594512	119594512	+	Missense_Mutation	SNP	G	G	C	rs140426282		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
SCARB1	949	hgsc.bcm.edu	37	12	125348263	125348263	+	Missense_Mutation	SNP	C	C	T	rs4238001	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	862	324	537	0	1
EP400	57634	broad.mit.edu	37	12	132547096	132547097	+	Frame_Shift_Del	DEL	GC	GC	-	rs151326088	alternate_allele	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
EP400	57634	hgsc.bcm.edu;broad.mit.edu	37	12	132547099	132547099	+	Silent	SNP	G	G	A	rs145603866	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	9	9	0	0	0
EP400	57634	broad.mit.edu	37	12	132547129	132547129	+	Silent	SNP	G	G	A	rs138819442	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	29	20	9	0	0
DLEU1	10301	broad.mit.edu	37	13	50656582	50656582	+	RNA	SNP	T	T	A	rs2066575	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	3	3	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	1	0	0	0
EPB42	2038	broad.mit.edu	37	15	43501531	43501531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
WASH3P	374666	broad.mit.edu	37	15	102516714	102516714	+	RNA	SNP	T	T	A	rs78028344	bycluster;byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	30	9	13	0	8
TPSD1	23430	hgsc.bcm.edu	37	16	1306346	1306346	+	Missense_Mutation	SNP	C	C	G	rs3865205	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
PKD1	5310	broad.mit.edu	37	16	2152129	2152129	+	Silent	SNP	A	A	G	rs79276175		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	30	3	27	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2156447	2156447	+	Silent	SNP	G	G	A	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	32	28	4	0	0
PRSS27	83886	broad.mit.edu	37	16	2762757	2762757	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	3	2	1	0	0
C16orf82	162083	broad.mit.edu	37	16	27078705	27078705	+	Missense_Mutation	SNP	T	T	C	rs115398674	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
GPT2	84706	broad.mit.edu	37	16	46956237	46956237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	31	31	0	0	0
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175655	+	Missense_Mutation	SNP	C	C	T	rs199760974		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61851433	61851433	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	2	2	0	0	0
FUK	197258	hgsc.bcm.edu	37	16	70507214	70507214	+	Missense_Mutation	SNP	C	C	T	rs201801842		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	5	4	1	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu	37	17	4046054	4046054	+	Missense_Mutation	SNP	G	G	A	rs199896183		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
DNAH9	1770	broad.mit.edu	37	17	11778273	11778273	+	Missense_Mutation	SNP	T	T	G	rs141082617	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830459	36830459	+	Missense_Mutation	SNP	G	G	A	rs111565436		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
C17orf53	78995	bcgsc.ca	37	17	42225547	42225547	+	Missense_Mutation	SNP	A	A	C	rs227584	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096100	79096100	+	Missense_Mutation	SNP	C	C	G	rs62073020		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	0	1	0	0
ACTG1	71	bcgsc.ca	37	17	79478007	79478007	+	Silent	SNP	G	G	A	rs1135989	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	16	16	0	0	0
MOCOS	55034	hgsc.bcm.edu	37	18	33767568	33767568	+	Missense_Mutation	SNP	C	C	A	rs113873219		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	23	0	23	0	0
KCNG2	26251	hgsc.bcm.edu	37	18	77624240	77624240	+	Silent	SNP	C	C	T	rs140218057	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	10	0	10	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	1	0	0	0
HNRNPM	4670	hgsc.bcm.edu	37	19	8551112	8551112	+	Silent	SNP	G	G	T	rs12977861	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	79	41	38	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	5	2	3	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	20	7	13	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	rs17710707	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	4	2	2	0	0
GDF1	2657	hgsc.bcm.edu	37	19	18980172	18980172	+	Missense_Mutation	SNP	G	G	A	rs4808863	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
CILP2	148113	hgsc.bcm.edu	37	19	19651140	19651140	+	Silent	SNP	A	A	G	rs4808970	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
LSM14A	26065	broad.mit.edu	37	19	34710315	34710315	+	Silent	SNP	T	T	G	rs201741862		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	10	10	0	0	0
C19orf55	148137	hgsc.bcm.edu	37	19	36258934	36258934	+	Missense_Mutation	SNP	C	C	T	rs200267133		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
PRODH2	58510	broad.mit.edu	37	19	36303169	36303169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
GGN	199720	hgsc.bcm.edu	37	19	38876383	38876383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
DMRTC2	63946	broad.mit.edu	37	19	42354650	42354650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ZNF221	7638	broad.mit.edu;bcgsc.ca	37	19	44469119	44469119	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
BCL3	602	hgsc.bcm.edu	37	19	45261520	45261520	+	Silent	SNP	C	C	T	rs34401216	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	9	2	7	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	4	3	1	0	0
RUVBL2	10856	ucsc.edu	37	19	49507542	49507542	+	Silent	SNP	A	A	G	rs11558800	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
FCGRT	2217	broad.mit.edu	37	19	50028734	50028734	+	Missense_Mutation	SNP	G	G	T	rs34522905	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	26	26	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	1	0	0	0
VSIG10L	147645	broad.mit.edu	37	19	51844471	51844471	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
PPP2R1A	5518	broad.mit.edu	37	19	52714629	52714629	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	280	253	25	1	1
ZNF534	147658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52941934	52941934	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
EPN1	29924	broad.mit.edu	37	19	56188543	56188543	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	7	7	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ZNF837	116412	hgsc.bcm.edu	37	19	58879606	58879606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
SLC27A5	10998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	59010241	59010241	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	21	16	5	0	0
EPT1	85465	broad.mit.edu	37	2	26587743	26587743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	4	4	0	0	0
KCNK3	3777	hgsc.bcm.edu	37	2	26915985	26915985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	72	36	36	0	0
PSME4	23198	bcgsc.ca	37	2	54115096	54115096	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	13	13	0	0	0
USP34	9736	broad.mit.edu	37	2	61493260	61493260	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	1	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	3	2	1	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
CPS1	1373	ucsc.edu;bcgsc.ca	37	2	211504722	211504722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
SPEG	10290	hgsc.bcm.edu	37	2	220313680	220313680	+	Silent	SNP	G	G	C	rs60593157	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	0	1	0	0
PRR21	643905	bcgsc.ca	37	2	240981459	240981459	+	Missense_Mutation	SNP	A	A	G	rs147134334	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
PRR21	643905	bcgsc.ca	37	2	240982075	240982075	+	Missense_Mutation	SNP	A	A	G	rs139834525	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
SDCBP2	27111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1293253	1293253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	4	2	2	0	0
LZTS3	0	broad.mit.edu	37	20	3145141	3145141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	7	6	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29631557	29631557	+	RNA	SNP	A	A	G	rs1803595	bycluster;by2hit2allele	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	137	40	97	0	0
FRG1B	284802	bcgsc.ca	37	20	29632784	29632784	+	RNA	SNP	C	C	G	rs6087299		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	3	0	3	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	2	0	2	0	0
EVA1C	59271	bcgsc.ca	37	21	33840095	33840095	+	Silent	SNP	C	C	T	rs8130653	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	3	3	0	0	0
C21orf33	8209	ucsc.edu	37	21	45553596	45553596	+	Missense_Mutation	SNP	T	T	C	rs968714	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	99	50	48	0	1
KRTAP10-10	353333	ucsc.edu	37	21	46057418	46057418	+	Missense_Mutation	SNP	G	G	C	rs116673061	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
KRTAP10-10	353333	ucsc.edu	37	21	46057422	46057422	+	Missense_Mutation	SNP	T	T	A	rs112205018	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
MIF	4282	hgsc.bcm.edu	37	22	24237074	24237074	+	Missense_Mutation	SNP	C	C	T	rs182012324		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	403	402	1	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
BAIAP2L2	80115	broad.mit.edu;bcgsc.ca	37	22	38482353	38482394	+	In_Frame_Del	DEL	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
BHLHE40	8553	bcgsc.ca	37	3	5024771	5024771	+	Silent	SNP	T	T	C	rs908078	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	3	3	0	0	0
TRAK1	22906	broad.mit.edu	37	3	42251607	42251607	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
TRAK1	22906	broad.mit.edu	37	3	42251611	42251612	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
DHX30	22907	broad.mit.edu	37	3	47888819	47888819	+	Silent	SNP	C	C	T	rs114902473	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	21	21	0	0	0
IFRD2	7866	broad.mit.edu	37	3	50325647	50325647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	37	36	1	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ADCY5	111	hgsc.bcm.edu	37	3	123167249	123167249	+	Silent	SNP	G	G	A	rs4678027		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
CHST13	166012	hgsc.bcm.edu	37	3	126260995	126260995	+	Silent	SNP	C	C	T	rs7614066	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
EFCC1	79825	broad.mit.edu	37	3	128751736	128751736	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
SI	6476	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164783069	164783069	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195595405	195595405	+	Silent	SNP	G	G	A	rs1056726	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	5	3	2	0	0
SDHAP1	255812	ucsc.edu	37	3	195690216	195690216	+	RNA	SNP	T	T	C	rs189732960		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	30	11	19	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	29	6	23	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492769	48492769	+	Missense_Mutation	SNP	A	A	T	rs74929644		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
MUC7	4589	bcgsc.ca	37	4	71347240	71347240	+	Missense_Mutation	SNP	T	T	C	rs145745951	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
SLC4A4	8671	broad.mit.edu	37	4	72215748	72215748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
C4orf32	132720	hgsc.bcm.edu	37	4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	rs10002700		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	4	0	4	0	0
SEC24D	9871	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119653957	119653957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	13	11	2	0	0
FRG1	2483	bcgsc.ca	37	4	190876283	190876283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	128	128	0	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
KIAA0947	23379	broad.mit.edu	37	5	5460838	5460838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	4	4	0	0	0
SLCO4C1	353189	broad.mit.edu;bcgsc.ca	37	5	101592982	101592982	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
CDKL3	51265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	133640095	133640095	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	4	0	4	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	3	0	3	0	0
HLA-C	3107	mdanderson.org	37	6	31239049	31239049	+	Silent	SNP	G	G	T	rs1065406	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	15	15	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
REV3L	5980	broad.mit.edu	37	6	111711365	111711365	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	1	0	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	0	1	0	0
MICALL2	79778	hgsc.bcm.edu	37	7	1484572	1484572	+	Silent	SNP	A	A	G	rs10435184		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	47	0	47	0	0
DNAH11	8701	broad.mit.edu	37	7	21939689	21939689	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	27	27	0	0	0
MPP6	51678	broad.mit.edu	37	7	24705291	24705291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	7	7	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634630	30634630	+	Silent	SNP	G	G	C	rs2529438	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	34	14	20	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	21	0	21	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	2	0	2	0	0
NSMAF	8439	hgsc.bcm.edu	37	8	59571856	59571856	+	Missense_Mutation	SNP	A	A	C	rs59606339	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
EPPK1	83481	bcgsc.ca	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
FOXH1	8928	hgsc.bcm.edu	37	8	145700381	145700381	+	Missense_Mutation	SNP	C	C	G	rs144830740	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	2	0	2	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	6	3	3	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	2	0	2	0	0
IER5L	389792	hgsc.bcm.edu	37	9	131940019	131940019	+	Missense_Mutation	SNP	G	G	A	rs184457	byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
SOHLH1	402381	broad.mit.edu	37	9	138590196	138590196	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	1	0	0	0
tRNA-Tyr	0	broad.mit.edu	37	MT	5854	5854	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1666	1613	52	0	1
ND5	0	broad.mit.edu	37	MT	13106	13106	+	Missense_Mutation	SNP	T	T	C	rs2853501	byfrequency;alternate_allele	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	1	0	0	0
ND5	0	broad.mit.edu	37	MT	13182	13182	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1467	1324	142	0	1
VCX	26609	broad.mit.edu	37	X	7811644	7811644	+	Missense_Mutation	SNP	G	G	A	rs199801261		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
AMOT	154796	broad.mit.edu	37	X	112059030	112059030	+	Silent	SNP	A	A	G	rs143986904	by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	1	1	0	0	0
FBXL15	79176	broad.mit.edu	37	10	104182716	104182717	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
SIX6	4990	broad.mit.edu	37	14	60977896	60977897	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
PAQR4	124222	broad.mit.edu	37	16	3019781	3019782	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
PIEZO1	9780	broad.mit.edu	37	16	88789666	88789667	+	In_Frame_Ins	INS	-	-	CCTGCT	rs11281795		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
CRIPAK	285464	broad.mit.edu	37	4	1388622	1388623	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
LURAP1L	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	-	GGCGGCGGC	rs139315731	bycluster;by1000genomes	TCGA-OR-A5LS-01A-11D-A29I-10	TCGA-OR-A5LS-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	3c55b33a-f83d-46c7-9814-58bc5109ff6a	03b19a61-1fbe-46e5-9de0-19bf2e02cb24	0	0	0	0	0
