Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SAMD11	148398	hgsc.bcm.edu	37	1	877831	877831	+	Missense_Mutation	SNP	T	T	C	rs6672356		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
AGRN	375790	hgsc.bcm.edu;broad.mit.edu	37	1	979279	979279	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SDF4	51150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1153176	1153176	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SCNN1D	6339	ucsc.edu;bcgsc.ca	37	1	1221031	1221031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
ACAP3	116983	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1230156	1230156	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	74	46	28	0	0
CPSF3L	54973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1247523	1247523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1275439	1275439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	136	75	61	0	0
MMP23A	8511	bcgsc.ca	37	1	1633225	1633225	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CALML6	163688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1848206	1848206	+	Missense_Mutation	SNP	A	A	T	rs200415259	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GABRD	2563	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1959038	1959038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	11	0	0	0
PEX10	5192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2341850	2341850	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	18	11	7	0	0
MMEL1	79258	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	2522472	2522472	+	Missense_Mutation	SNP	C	C	T	rs199926063		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	18	5	13	0	0
ARHGEF16	27237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3380095	3380095	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
CCDC27	148870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3672052	3672052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C1orf174	339448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3807605	3807605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614415	6614415	+	Missense_Mutation	SNP	A	A	G	rs6693400		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DNAJC11	55735	broad.mit.edu	37	1	6727803	6727804	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7721841	7721841	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
VAMP3	9341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7837354	7837354	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	231	106	125	0	0
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7887208	7887208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	5	9	0	0
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	8074279	8074279	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	30	16	14	0	0
TMEM201	199953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9657097	9657097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	15	7	8	0	0
UBE4B	10277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10190785	10190785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10364624	10364624	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	3	2	0	0
CASZ1	54897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10699787	10699787	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
CASZ1	54897	hgsc.bcm.edu	37	1	10719929	10719929	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
SRM	6723	broad.mit.edu;bcgsc.ca	37	1	11115019	11115019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIAA2013	90231	broad.mit.edu;mdanderson.org	37	1	11982929	11982929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	183	90	93	0	0
DHRS3	9249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	12632790	12632792	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GGA	GGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PRAMEF1	65121	bcgsc.ca	37	1	12854135	12854135	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LOC440563	0	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	13183603	13183603	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PRAMEF19	645414	bcgsc.ca	37	1	13475084	13475084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
AGMAT	79814	hgsc.bcm.edu	37	1	15911349	15911349	+	Silent	SNP	G	G	A	rs3737705	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16174571	16174571	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16174581	16174581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
EPHA2	1969	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16461615	16461615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	1	2	0	0
CROCCP3	114819	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16802916	16802916	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
NBPF1	55672	broad.mit.edu;bcgsc.ca	37	1	16891333	16891333	+	Missense_Mutation	SNP	C	C	T	rs3872309	bycluster;byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	224	218	6	0	0
ESPNP	284729	bcgsc.ca	37	1	17029670	17029670	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ESPNP	284729	broad.mit.edu	37	1	17033545	17033545	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MST1L	11223	bcgsc.ca	37	1	17084141	17084141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
PADI3	51702	broad.mit.edu	37	1	17575686	17575686	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
TAS1R2	80834	broad.mit.edu	37	1	19181157	19181157	+	Silent	SNP	C	C	T	rs202163137	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HTR6	3362	broad.mit.edu	37	1	20005583	20005583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	8	0	0	0
RAP1GAP	5909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21940490	21940490	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
EPHA8	2046	ucsc.edu;bcgsc.ca	37	1	22915595	22915595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
EPHA8	2046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22927299	22927299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HNRNPR	10236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23636987	23636987	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	109	53	56	0	0
ASAP3	55616	bcgsc.ca;mdanderson.org	37	1	23763445	23763445	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24417405	24417405	+	Silent	SNP	G	G	A	rs201898557		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GRHL3	57822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24664169	24664169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
STPG1	90529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24706214	24706214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	5	6	0	0
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24975468	24975468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	36	15	21	0	0
RPS6KA1	6195	hgsc.bcm.edu	37	1	26856442	26856442	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	2	2	0	0
RPS6KA1	6195	hgsc.bcm.edu	37	1	26856462	26856462	+	Silent	SNP	T	T	G	rs11800553	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TMEM222	84065	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27648800	27648800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	34	21	13	0	0
GPR3	2827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27720657	27720657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	24	13	11	0	0
AHDC1	27245	hgsc.bcm.edu	37	1	27877519	27877519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	24	11	13	0	0
HCRTR1	3061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32084894	32084894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32197006	32197006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
BAI2	576	broad.mit.edu;bcgsc.ca	37	1	32198634	32198634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
SFPQ	6421	hgsc.bcm.edu	37	1	35658609	35658609	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	58	31	27	0	0
AGO3	192669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36437666	36437666	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	2	6	0	0
AGO3	192669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36437741	36437741	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
MACF1	23499	broad.mit.edu	37	1	39760802	39760802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
PPIEL	728448	bcgsc.ca	37	1	39989241	39989241	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
PPCS	79717	hgsc.bcm.edu	37	1	42922266	42922266	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
YBX1	4904	broad.mit.edu;bcgsc.ca	37	1	43166582	43166582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1816	1814	1	1	0
ERMAP	114625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43308843	43308843	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	12	4	0	0
PTPRF	5792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44083409	44083409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TESK2	10420	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45923405	45923405	+	Missense_Mutation	SNP	C	C	T	rs149714069	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
PIK3R3	8503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	46509408	46509410	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GTT	GTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PIK3R3	8503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46509521	46509521	+	Missense_Mutation	SNP	A	A	G	rs144541540		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	33	16	17	0	0
EFCAB14	9813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47182080	47182080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	80	46	34	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47325212	47325212	+	RNA	SNP	G	G	A	rs71645846		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	47904233	47904233	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
DMRTA2	63950	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	50885264	50885264	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BTF3L4	91408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52552390	52552390	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GPX7	2882	broad.mit.edu;bcgsc.ca	37	1	53068170	53068170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SELRC1	65260	bcgsc.ca	37	1	53158531	53158531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PODN	127435	broad.mit.edu	37	1	53535706	53535706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TACSTD2	4070	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	59042424	59042424	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60312772	60312772	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
ATG4C	84938	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63282309	63282309	+	Missense_Mutation	SNP	A	A	T	rs11545528	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	6	4	0	0
EFCAB7	84455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63999139	63999139	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	6	10	0	0
DIRAS3	9077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68512838	68512838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	8	1	0	0
GNG12-AS1	100289178	bcgsc.ca	37	1	68620994	68620994	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	90486370	90486370	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	44	26	18	0	0
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91790300	91790300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
TGFBR3	7049	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92200429	92200429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	202	129	73	0	0
KIAA1107	23285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92647016	92647016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	1	6	0	0
HIAT1	64645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100527406	100527406	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	56	32	24	0	0
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100586978	100586978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	4	2	0	0
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	108298065	108298065	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
HENMT1	113802	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109197353	109197353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	3	4	0	0
KIAA1324	57535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109740206	109740206	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109793092	109793092	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
GPR61	83873	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110085867	110085867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GNAT2	2780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110148988	110148988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
ALX3	257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110607490	110607490	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KCNA2	3737	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	111144784	111144784	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PIFO	128344	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111890299	111890299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113666622	113666622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
MAGI3	260425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114189207	114189207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
HIPK1	204851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114506014	114506014	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
WARS2	10352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	119683258	119683258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	3	3	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
PDE4DIP	9659	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	144854181	144854181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	5	0	0	0
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	144871772	144871772	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SEC22B	9554	broad.mit.edu;bcgsc.ca	37	1	145115843	145115843	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	159	159	0	0	0
NBPF10	100132406	broad.mit.edu	37	1	145293269	145293269	+	Splice_Site	SNP	G	G	A	rs75226570		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PIAS3	10401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145579296	145579296	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	18	12	6	0	0
ANP32E	81611	bcgsc.ca	37	1	150195565	150195565	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PRPF3	9129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150298336	150298336	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GOLPH3L	55204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150636172	150636172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	19	9	10	0	0
GABPB2	126626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151065754	151065754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	15	8	7	0	0
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151787534	151787534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151789189	151789189	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C2CD4D	100191040	bcgsc.ca	37	1	151811467	151811467	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	0	8	0	0
IVL	3713	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152883314	152883314	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
UBAP2L	9898	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154224048	154224048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	79	45	34	0	0
UBAP2L	9898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154224069	154224069	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FLAD1	80308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154962713	154962713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	51	40	11	0	0
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155452085	155452085	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	4	6	0	0
KIAA0907	22889	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155885735	155885735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	17	11	6	0	0
SH2D2A	9047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156779155	156779155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SH2D2A	9047	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156779558	156779558	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ARHGEF11	9826	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156926236	156926236	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	27	17	10	0	0
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156954154	156954154	+	Missense_Mutation	SNP	A	A	T	rs151017400	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	10	6	0	0
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157803262	157803262	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157804424	157804424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158064671	158064671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	6	0	0	0
OR10K2	391107	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158389762	158389762	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR10Z1	128368	hgsc.bcm.edu;bcgsc.ca	37	1	158576487	158576487	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LOC100131825	0	bcgsc.ca	37	1	159170554	159170554	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
IGSF9	57549	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	159898610	159898610	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KCNJ10	3766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	160011970	160011970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
F11R	50848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160969185	160969185	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TSTD1	100131187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161007709	161007709	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
USP21	27005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161130942	161130942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	25	10	15	0	0
NDUFS2	4720	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	161173239	161173239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	114	106	8	0	0
FCGR3A	2214	broad.mit.edu;bcgsc.ca	37	1	161514695	161514695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	9	0	0	0
FCGR3A	2214	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	161514700	161514700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	9	0	0	0
UHMK1	127933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	162467903	162467903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	21	8	13	0	0
FAM78B	149297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166135378	166135378	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
SELP	6403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169578907	169578907	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FMO2	2327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171168622	171168622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANKRD45	339416	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173616087	173616087	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
ACBD6	84320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180471390	180471390	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	54	29	25	0	0
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180904988	180904988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
CACNA1E	777	broad.mit.edu;bcgsc.ca	37	1	181702837	181702837	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181762806	181762806	+	Silent	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF648	127665	hgsc.bcm.edu	37	1	182026352	182026352	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF648	127665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182026897	182026897	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186908147	186908147	+	Missense_Mutation	SNP	T	T	C	rs201251994	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
B3GALT2	8707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193149518	193149518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	197073232	197073232	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CAMSAP2	23271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	200827020	200827020	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIF21B	23046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200974545	200974545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
FMOD	2331	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203317354	203317354	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SNRPE	6635	hgsc.bcm.edu;bcgsc.ca	37	1	203832839	203832839	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MIR135B	442891	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205417469	205417469	+	RNA	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
EIF2D	1939	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206769135	206769135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	60	33	27	0	0
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	211462519	211462519	+	Splice_Site	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
VASH2	79805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	213125126	213125126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RPS6KC1	26750	broad.mit.edu;bcgsc.ca	37	1	213277826	213277826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	8	2	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	19	0	19	0	0
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216246596	216246596	+	Silent	SNP	G	G	A	rs138416665		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
EPRS	2058	broad.mit.edu	37	1	220142206	220142206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	347	346	1	0	0
TAF1A	9015	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222737423	222737423	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	2	2	0	0
C1orf65	164127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223568189	223568189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CAPN2	824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223947169	223947169	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	2	3	0	0
PARP1	142	broad.mit.edu;bcgsc.ca	37	1	226573266	226573266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	64	60	4	0	0
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	228475560	228475560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
CAPN9	10753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	230921739	230921739	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TTC13	79573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231079568	231079568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	5	3	0	0
ARV1	64801	hgsc.bcm.edu	37	1	231131567	231131567	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TRIM67	440730	ucsc.edu;bcgsc.ca	37	1	231349649	231349649	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GNPAT	8443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231396359	231396359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	21	10	11	0	0
EXOC8	149371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231471391	231471391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	10	6	0	0
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	240255872	240255872	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR14I1	401994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248844883	248844883	+	Silent	SNP	G	G	A	rs201585486	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SH3BP5L	80851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	249106288	249106288	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	8	12	0	0
DIP2C	22982	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	433695	433695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ADARB2	105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	1284298	1284298	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PITRM1	10531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	3205972	3205972	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	101	58	43	0	0
UCN3	114131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	5415774	5415774	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	7213881	7213881	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	0	4	0	0
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7788557	7788557	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	16930425	16930425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17024637	17024637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CUBN	8029	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17130173	17130173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17146555	17146555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
COMMD3	23412	bcgsc.ca	37	10	22605290	22605290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	24762792	24762792	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27324108	27324108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
MASTL	84930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27470451	27470451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	32	20	12	0	0
MKX	283078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27964211	27964211	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
ZNF438	220929	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	31139259	31139259	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FZD8	8325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	35929513	35929513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	3	4	0	0
ANKRD30A	91074	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	37442574	37442574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37478469	37478469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37508025	37508025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANKRD30BP3	338579	broad.mit.edu	37	10	45669898	45669898	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANKRD30BP3	338579	bcgsc.ca	37	10	45670097	45670097	+	RNA	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	45869760	45869760	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ALOX5	240	broad.mit.edu;bcgsc.ca	37	10	45939230	45939230	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MARCH8	220972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	46028623	46028623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	4	1	0	0
GPRIN2	9721	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	47000008	47000008	+	Silent	SNP	G	G	A	rs111800394		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FAM35DP	439965	ucsc.edu;bcgsc.ca	37	10	47409927	47409927	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	49951020	49951020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49951058	49951058	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PCDH15	65217	ucsc.edu;bcgsc.ca	37	10	55566476	55566476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C10orf107	219621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63441022	63441022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF365	22891	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	64159513	64159513	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DNA2	1763	hgsc.bcm.edu;broad.mit.edu	37	10	70182521	70182521	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCAR1	55749	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70496802	70496802	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCAR1	55749	broad.mit.edu	37	10	70509285	70509286	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C10orf35	219738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71391540	71391540	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	26	10	16	0	0
PPA1	5464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	71969033	71969033	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	489	281	208	0	0
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72434451	72434451	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73553114	73553114	+	Silent	SNP	G	G	A	rs142788731	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SYNPO2L	79933	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75407283	75407283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SYNPO2L	79933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	75408109	75408109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
ZSWIM8	23053	hgsc.bcm.edu;bcgsc.ca	37	10	75560464	75560464	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NDST2	8509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75566103	75566103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	17	6	11	0	0
NDST2	8509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75567679	75567679	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	10	6	0	0
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79581401	79581401	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	4	3	0	0
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79613277	79613277	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	3	7	0	0
ZMIZ1	57178	hgsc.bcm.edu;bcgsc.ca	37	10	81072446	81072446	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TMEM254	80195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	81838509	81838510	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANXA11	311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	81927056	81927056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	44	14	29	0	1
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88469694	88469694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BMPR1A	657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88683197	88683197	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	26	15	11	0	0
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96006241	96006241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	2	3	0	0
ALDH18A1	5832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97393407	97393407	+	Splice_Site	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANKRD2	26287	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99338087	99338087	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HPS1	3257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100202968	100202968	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	54	26	28	0	0
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101594287	101594287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LDB1	8861	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103867930	103867930	+	Missense_Mutation	SNP	C	C	T	rs141161148	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	82	37	45	0	0
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103900009	103900009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	22	10	12	0	0
CNNM2	54805	hgsc.bcm.edu;bcgsc.ca	37	10	104679763	104679763	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NEURL	9148	hgsc.bcm.edu	37	10	105344837	105344837	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105750547	105750547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	44	25	19	0	0
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	106675687	106675687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
XPNPEP1	7511	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111633180	111633180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	3	1	0	0
ADRA2A	150	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	112838493	112838493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TCF7L2	6934	broad.mit.edu;bcgsc.ca	37	10	114711348	114711348	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	5	6	0	0
C10orf118	55088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115891096	115891096	+	Splice_Site	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RGS10	6001	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121259635	121259635	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	12	4	0	0
MIR5694	100847064	broad.mit.edu	37	10	122581410	122581415	+	RNA	DEL	AGCGAT	AGCGAT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123324025	123324025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FAM24B-CUZD1	0	bcgsc.ca	37	10	124609854	124609854	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HMX2	3167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	124909596	124909596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
DHX32	55760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127555708	127555708	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	35	19	16	0	0
PWWP2B	170394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134219477	134219477	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	131	41	89	1	0
GPR123	84435	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134942688	134942688	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ADAM8	101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135086884	135086884	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PHRF1	57661	broad.mit.edu	37	11	610978	610978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	11	0	0	0
DRD4	1815	hgsc.bcm.edu	37	11	637463	637463	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
DEAF1	10522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	686974	686974	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	6	2	0	0
MUC2	4583	bcgsc.ca	37	11	1093295	1093295	+	Missense_Mutation	SNP	C	C	T	rs200145328	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1253969	1253969	+	Silent	SNP	A	A	G	rs72846370		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu;bcgsc.ca	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5510498	5510498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6566347	6566347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KRT8P41	283102	bcgsc.ca	37	11	9116202	9116202	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LDHA	3939	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18428915	18428915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1655	26	1629	0	0
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	18728522	18728522	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
PTPN5	84867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18765655	18765655	+	Silent	SNP	C	C	T	rs150000507	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCDC73	493860	hgsc.bcm.edu;broad.mit.edu	37	11	32635951	32635951	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47701524	47701524	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LOC440040	0	broad.mit.edu;bcgsc.ca	37	11	49831487	49831487	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR5M11	219487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56310506	56310506	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DDB1	1642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61099071	61099071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	88	59	29	0	0
BEST1	7439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61723382	61723382	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
SLC22A25	387601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62931536	62931536	+	Silent	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64368345	64368345	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MEN1	4221	hgsc.bcm.edu	37	11	64572093	64572093	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ATG2A	23130	bcgsc.ca	37	11	64665394	64665394	+	Silent	SNP	T	T	C	rs61741079	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	22	22	0	0	0
TCIRG1	10312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67817504	67817504	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67938597	67938597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	0	13	0	0
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72945404	72945404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	58	20	38	0	0
P2RY2	5029	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72945486	72945486	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	12	0	0	0
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72945487	72945487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	12	0	0	0
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72945489	72945489	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	13	0	0	0
C11orf30	56946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76169377	76169377	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751543	76751604	+	In_Frame_Del	DEL	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C11orf54	28970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93488407	93488407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	0	12	0	0
GPR83	10888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94134121	94134121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PIH1D2	120379	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	111943748	111943748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C11orf57	55216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	111953575	111953578	+	Frame_Shift_Del	DEL	AGAG	AGAG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGAG	AGAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SDHD	6392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111957633	111957633	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	38	4	34	0	0
RNF214	257160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117153198	117153198	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	2	18	0	0
POU2F3	25833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120180235	120180235	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GRIK4	2900	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120531058	120531058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	1	4	0	0
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121016701	121016701	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
NFRKB	4798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	129754659	129754659	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NCAPD3	23310	broad.mit.edu;bcgsc.ca	37	11	134048719	134048719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134147638	134147638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GLB1L2	89944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134240273	134240273	+	Missense_Mutation	SNP	G	G	A	rs202239114		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	431710	431710	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	0	5	0	0
FGF23	8074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4479600	4479600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
VAMP1	6843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6575152	6575152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	0	5	0	0
NCAPD2	9918	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6626132	6626132	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	21	3	18	0	0
GNB3	2784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6954905	6954905	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
CLEC4C	170482	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7898983	7898983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RIMKLB	57494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8926136	8926136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
KLRC4-KLRK1	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	10532370	10532370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CSDA	8531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10856704	10856704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	93	13	78	1	1
PRH1-PRR4	0	bcgsc.ca	37	12	11090836	11090836	+	RNA	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TAS2R19	259294	bcgsc.ca	37	12	11174416	11174416	+	Missense_Mutation	SNP	A	A	G	rs112900131	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ETV6	2120	ucsc.edu;bcgsc.ca	37	12	12044052	12044052	+	RNA	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
MANSC1	54682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	12483292	12483292	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	6	0	0	0
LOH12CR1	118426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12510415	12510415	+	Missense_Mutation	SNP	G	G	C	rs151180790	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	0	6	0	0
EMP1	2012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13367530	13367530	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	11	0	0	0
ABCC9	10060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	22069967	22069967	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	5	0	0	0
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	23818387	23818387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FAR2	55711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	29446360	29446360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PKP2	5318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32996207	32996207	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TMEM117	84216	bcgsc.ca	37	12	44238546	44238546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	3	1	0	0
SLC38A1	81539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	46591521	46591521	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
SLC38A2	54407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	46756130	46756130	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	24	14	10	0	0
PCED1B	91523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	47629462	47629462	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
COL2A1	1280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48383041	48383041	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
COL2A1	1280	hgsc.bcm.edu;bcgsc.ca	37	12	48391429	48391429	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ADCY6	112	hgsc.bcm.edu	37	12	49177012	49177012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
WNT1	7471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49375164	49375164	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49416426	49416426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	43	39	3	1	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49437705	49437705	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	2	2	0	0
LMBR1L	55716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49491821	49491821	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	6	10	0	0
FAM186A	121006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50725578	50725578	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50867901	50867901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	15	7	8	0	0
KRT84	3890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52777465	52777465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53673526	53673526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR9K2	441639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55523992	55523992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SUOX	6821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56397807	56397807	+	Missense_Mutation	SNP	C	C	T	rs76442086		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	26	14	12	0	0
ANKRD52	283373	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	12	56638934	56638934	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	5	0	0	0
CS	1431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56676360	56676360	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	347	187	160	0	0
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56994876	56994876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NACA	4666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57113354	57113354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
HSD17B6	8630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57167811	57167811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZBTB39	9880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57397418	57397418	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
STAT6	6778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57493582	57493582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	135	64	71	0	0
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57560791	57560791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	4	8	0	0
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57579466	57579466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	23	13	10	0	0
USP15	9958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	62783220	62783220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
AVPR1A	552	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	63544037	63544037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
FLJ41278	0	broad.mit.edu	37	12	65370824	65370824	+	RNA	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
WIF1	11197	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	65471560	65471560	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MSRB3	253827	broad.mit.edu;bcgsc.ca	37	12	65857056	65857056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	66788074	66788074	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67696266	67696266	+	Silent	SNP	G	G	A	rs144692083	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	74	41	33	0	0
DYRK2	8445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	68051174	68051174	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	15	7	8	0	0
FRS2	10818	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69968573	69968573	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	28	9	18	1	0
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78334110	78334110	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80658922	80658922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80665446	80665446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
METTL25	84190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	82780603	82780603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	5	2	0	0
NUDT4	11163	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	93793069	93793069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	90	90	0	0	0
CCDC41	51134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94725525	94725525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	3	4	0	0
NTN4	59277	broad.mit.edu	37	12	96077421	96077421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	29	29	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	0	4	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	2	2	0	0
APAF1	317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	99061321	99061321	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
CHST11	50515	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	105150884	105150884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	37	17	19	0	1
UBE3B	89910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109959270	109959270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	32	14	18	0	0
MMAB	326625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109998890	109998890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	39	24	15	0	0
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	110221440	110221440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
FAM216A	29902	hgsc.bcm.edu	37	12	110906720	110906720	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112171864	112171864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DTX1	1840	bcgsc.ca	37	12	113496054	113496054	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PLBD2	196463	broad.mit.edu	37	12	113812652	113812652	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	513	512	1	0	0
RNFT2	84900	broad.mit.edu;bcgsc.ca	37	12	117273791	117273791	+	Silent	SNP	C	C	T	rs192187826	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
SRRM4	84530	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	119554810	119554810	+	Missense_Mutation	SNP	G	G	A	rs189389386		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121868110	121868110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	26	9	17	0	0
SETD1B	23067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122248666	122248666	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	3	1	0	0
VPS33A	65082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	122717402	122717402	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	62	30	32	0	0
ZCCHC8	55596	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122958256	122958256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	6	3	0	0
MPHOSPH9	10198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123679054	123679054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	2	6	0	0
DNAH10	196385	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	124409717	124409717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
NCOR2	9612	hgsc.bcm.edu	37	12	124856730	124856730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	68	33	35	0	0
AACS	65985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	125550233	125550233	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	18	9	9	0	0
RIMBP2	23504	hgsc.bcm.edu	37	12	130921471	130921471	+	Silent	SNP	T	T	C	rs2292663	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	132401137	132401137	+	Splice_Site	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
TPTE2P6	374491	broad.mit.edu	37	13	25168489	25168489	+	RNA	SNP	G	G	A	rs200109937		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FLT1	2321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28883025	28883025	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	27	27	0	0	0
PDS5B	23047	bcgsc.ca	37	13	33232435	33232435	+	Silent	SNP	A	A	G	rs2301393	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	11	0	0	0
PDS5B	23047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33338706	33338706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	0	9	0	0
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39262894	39262894	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SIAH3	283514	bcgsc.ca	37	13	46357696	46357696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MLNR	2862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49796459	49796459	+	Silent	SNP	A	A	T	rs202143577	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KPNA3	3839	hgsc.bcm.edu	37	13	50283733	50283733	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	23	23	0	0	0
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	77780870	77780870	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99083455	99083455	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	163	5	158	0	0
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99100570	99100570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	173	6	167	0	0
TPP2	7174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103288650	103288650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103399586	103399586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CDC16	8881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	115030673	115030673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	22	0	22	0	0
UPF3A	65110	hgsc.bcm.edu;broad.mit.edu	37	13	115057211	115057211	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
POTEG	404785	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	19573146	19573146	+	Splice_Site	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR4K2	390431	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20345046	20345046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR4K15	81127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20444355	20444355	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR11G2	390439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20666484	20666484	+	Silent	SNP	T	T	C	rs200553632	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
APEX1	328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20924074	20924074	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR6S1	341799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21109455	21109455	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HAUS4	54930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	23415765	23415765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	11	2	0	0
PSMB5	5693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23504062	23504062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	509	282	227	0	0
BCL2L2-PABPN1	100529063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23777326	23777326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	42	27	15	0	0
SLC22A17	51310	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23821014	23821014	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	5	0	0	0
IL25	64806	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23844931	23844931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MYH6	4624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23865566	23865566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23872558	23872558	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MYH7	4625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23894924	23894924	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RNF31	55072	hgsc.bcm.edu;bcgsc.ca	37	14	24619809	24619809	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TM9SF1	10548	bcgsc.ca	37	14	24662159	24662159	+	Missense_Mutation	SNP	C	C	T	rs201569838		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	159	72	86	0	1
TGM1	7051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24718579	24718579	+	Silent	SNP	G	G	A	rs201811993		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	2	2	0	0
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24801000	24801000	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PPP2R3C	55012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35585883	35585883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	9	7	0	0
PAX9	5083	ucsc.edu;bcgsc.ca	37	14	37135761	37135761	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45644600	45644600	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
FANCM	57697	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45654431	45654431	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FRMD6	122786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52182163	52182163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
NID2	22795	broad.mit.edu	37	14	52478281	52478281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SAMD4A	23034	hgsc.bcm.edu	37	14	55034812	55034812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	3	3	0	0
KTN1	3895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	56103915	56103915	+	Splice_Site	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SGPP1	81537	broad.mit.edu;mdanderson.org	37	14	64194307	64194307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	6	1	0	0
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64644145	64644145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	18	12	6	0	0
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65009141	65009141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	40	22	18	0	0
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65249147	65249147	+	Nonsense_Mutation	SNP	G	G	T	rs200559187	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65263322	65263322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MPP5	64398	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67768822	67768822	+	Missense_Mutation	SNP	G	G	A	rs75595607	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ADAM21	8747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	70926261	70926261	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PCNX	22990	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	71492916	71492916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	35	11	24	0	0
ACOT4	122970	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74061813	74061813	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	1	2	0	0
TMED10	10972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75643179	75643179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	322	157	165	0	0
POMT2	29954	hgsc.bcm.edu	37	14	77786922	77786922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
SPTLC2	9517	broad.mit.edu;bcgsc.ca	37	14	78036740	78036740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DIO2	1734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	80677760	80677760	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TSHR	7253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81557476	81557476	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FLRT2	23768	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	86089453	86089453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	1	2	0	0
SMEK1	55671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	91927933	91927933	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92792243	92792243	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92909757	92909757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GOLGA5	9950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	93277940	93277940	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	69	37	32	0	0
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93954014	93954014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SERPINA6	866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94772527	94772527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SERPINA3	12	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95088767	95088767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	41	24	17	0	0
SYNE3	161176	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95932517	95932517	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
PAPOLA	10914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	97027050	97027050	+	Splice_Site	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
BCL11B	64919	broad.mit.edu;mdanderson.org	37	14	99640941	99640941	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	99641025	99641025	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	99697775	99697775	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC25A47	283600	mdanderson.org	37	14	100793571	100793571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102476260	102476260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	63	39	24	0	0
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	102516785	102516785	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	102807679	102807680	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CINP	51550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102816363	102816363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	89	47	42	0	0
TECPR2	9895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102931570	102931570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	7	7	0	0
TRMT61A	115708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103999082	103999082	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	4	1	0	0
PPP1R13B	23368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104206356	104206356	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	9	5	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	23	7	16	0	0
INF2	64423	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	105172438	105172438	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CEP170B	283638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105350368	105350368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CEP170B	283638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105352726	105352726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	24	14	10	0	0
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105416057	105416057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TMEM121	80757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105995324	105995324	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
LOC646214	0	bcgsc.ca	37	15	21936889	21936889	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	22369302	22369302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NPAP1	23742	hgsc.bcm.edu	37	15	24921082	24921082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28377252	28377252	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28408358	28408358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	5	6	0	0
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28443647	28443647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28473416	28473416	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
LOC646278	0	bcgsc.ca	37	15	29060677	29060677	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	37	37	0	0	0
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29409295	29409295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	6	8	0	0
CHRFAM7A	89832	ucsc.edu;bcgsc.ca	37	15	30659681	30659681	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
CASC5	57082	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40914476	40914476	+	Missense_Mutation	SNP	A	A	G	rs73394756	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	2	3	0	0
MGA	23269	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42059314	42059314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	5	7	0	0
SPTBN5	51332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42149686	42149686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRRC57	255252	bcgsc.ca	37	15	42837435	42837435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	32	16	16	0	0
SERF2-C15ORF63	0	ucsc.edu;bcgsc.ca	37	15	44093779	44093779	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	3	3	0	0
SPG11	80208	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44918706	44918706	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SEMA6D	80031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48054484	48054484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48764789	48764789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	25	21	4	0	0
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48788314	48788314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	6	3	0	0
DTWD1	56986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49926737	49926737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SPPL2A	84888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	51014348	51014350	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CYP19A1	1588	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51514616	51514616	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	6	3	0	0
DYX1C1-CCPG1	100533483	bcgsc.ca	37	15	55681668	55681668	+	RNA	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DYX1C1	161582	ucsc.edu;bcgsc.ca	37	15	55790437	55790437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	1	2	0	0
PRTG	283659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56032850	56032850	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RORA	6095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	60803784	60803785	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63097938	63097938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	4	2	0	0
FBXL22	283807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	63893575	63893575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63916523	63916523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
CILP	8483	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65489585	65489585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
CILP	8483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65489631	65489631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
NOX5	79400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69331288	69331288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BBS4	585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73029922	73029922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	9	11	0	0
STRA6	64220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74487774	74487774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	6	0	0	0
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75498952	75498952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	72	68	4	0	0
C15orf39	56905	bcgsc.ca	37	15	75499374	75499374	+	Missense_Mutation	SNP	G	G	A	rs111653297	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	28	13	15	0	0
GOLGA6D	653643	hgsc.bcm.edu;broad.mit.edu	37	15	75586567	75586567	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75979767	75979767	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PSMA4	5685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78838004	78838004	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	230	108	122	0	0
C15orf37	283687	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	80215735	80215735	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	3	1	0	0
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81660598	81660598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
EFTUD1	79631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	82512116	82512116	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	13	7	0	0
LOC283693	0	broad.mit.edu;bcgsc.ca	37	15	83395260	83395260	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
UBE2Q2P1	388165	broad.mit.edu	37	15	85077360	85077360	+	RNA	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ALPK3	57538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85401392	85401392	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86810268	86810268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
POLG	5428	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89864046	89864046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	56	29	27	0	0
C15orf38-AP3S2	100526783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90378789	90378789	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	101	50	51	0	0
RCCD1	91433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91504901	91504901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	15	11	4	0	0
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	95013607	95013607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ARRDC4	91947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	98511297	98511297	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	3	2	0	0
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	99250942	99250942	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	23	14	9	0	0
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100514681	100514681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ADAMTS17	170691	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100533255	100533255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TM2D3	80213	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	102192528	102192528	+	Missense_Mutation	SNP	C	C	T	rs149437101		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	39	39	0	0	0
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102358817	102358817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
WASH3P	374666	broad.mit.edu;bcgsc.ca	37	15	102516484	102516484	+	RNA	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	111	101	9	0	1
CHTF18	63922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	840346	840346	+	Splice_Site	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1682360	1682360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MAPK8IP3	23162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1793368	1793368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	10	2	0	0
MAPK8IP3	23162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1814309	1814309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RPS2	6187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2013252	2013252	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	8	2	0	0
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2052607	2052607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	17	6	11	0	0
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2053060	2053060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	48	31	16	1	0
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2374440	2374440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	31	14	17	0	0
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2487128	2487128	+	Splice_Site	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	0	9	0	0
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2487231	2487231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	1	4	0	0
ATP6V0C	527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2564109	2564109	+	Missense_Mutation	SNP	C	C	G	rs147497038	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	349	187	162	0	0
CEMP1	752014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2580891	2580891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	4	1	0	0
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2816678	2816678	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	210	100	109	1	0
CLDN9	9080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3063682	3063682	+	Missense_Mutation	SNP	T	T	C	rs199692917		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CLDN9	9080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3063792	3063792	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C16orf90	646174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3545393	3545393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
VASN	114990	bcgsc.ca;mdanderson.org	37	16	4431929	4431929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	7	0	0	0
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	9004639	9004639	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	37	18	19	0	0
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	9004658	9004658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	36	13	23	0	0
CLEC16A	23274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	11272519	11272519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	25	15	10	0	0
NTAN1	123803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15131997	15131997	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	47	27	20	0	0
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15725252	15725252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MYH11	4629	hgsc.bcm.edu;bcgsc.ca	37	16	15802687	15802687	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PKD1P1	339044	broad.mit.edu	37	16	16425710	16425710	+	RNA	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
ARL6IP1	23204	hgsc.bcm.edu;bcgsc.ca	37	16	18805952	18805954	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TTG	TTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19051758	19051758	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GPRC5B	51704	ucsc.edu;bcgsc.ca	37	16	19883815	19883815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	5	1	0	0
PDILT	204474	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	20376740	20376740	+	Splice_Site	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PDILT	204474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20396090	20396090	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LOC100271836	0	bcgsc.ca	37	16	21470003	21470003	+	RNA	SNP	A	A	C	rs74012169		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	22135022	22135022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
COG7	91949	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23424846	23424846	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	53	18	35	0	0
GGA2	23062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23481455	23481455	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	81	35	46	0	0
EARS2	124454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23555852	23555852	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	23	10	13	0	0
EARS2	124454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23555917	23555917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	31	24	7	0	0
ERN2	10595	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23706207	23706207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
IL21R	50615	ucsc.edu;bcgsc.ca	37	16	27460153	27460153	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27549248	27549248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIAA0556	23247	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27761402	27761402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	4	3	0	0
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	28841942	28841942	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28848085	28848085	+	Missense_Mutation	SNP	C	C	T	rs188659783		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	132	73	59	0	0
ATP2A1	487	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28913320	28913320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
CD19	930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28943679	28943679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CD19	930	ucsc.edu;bcgsc.ca	37	16	28946768	28946768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PAGR1	79447	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	29827951	29827951	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	46	22	24	0	0
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29994580	29994580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	47	24	23	0	0
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29994973	29994973	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TAOK2	9344	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30002105	30002105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30002194	30002194	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	40	22	18	0	0
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30002536	30002536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	46	20	26	0	0
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30002651	30002651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	39	17	22	0	0
TBC1D10B	26000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30369775	30369775	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	56	27	29	0	0
ZNF771	51333	hgsc.bcm.edu	37	16	30429083	30429083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
ZNF785	146540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30594019	30594019	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	0	8	0	0
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30745920	30745920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	8	8	0	0
ORAI3	93129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30964661	30964661	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	74	55	19	0	0
SETD1A	9739	bcgsc.ca	37	16	30990658	30990658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	19	9	10	0	0
ZNF668	79759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31072498	31072498	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	13	3	0	0
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31371245	31371245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31471222	31471222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
ARMC5	79798	broad.mit.edu	37	16	31477963	31477963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	12	0	0	0
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47581450	47581450	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BRD7	29117	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50368679	50368679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	74	50	24	0	0
NLRC5	84166	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	57060004	57060004	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	0	4	0	0
NLRC5	84166	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	57060099	57060099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	0	4	0	0
NLRC5	84166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57089359	57089359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	2	2	0	0
CNGB1	1258	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	57993956	57993956	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CDH16	1014	ucsc.edu;bcgsc.ca	37	16	66950187	66950187	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC12A4	6560	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67980895	67980895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	5	15	0	0
FUK	197258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70503129	70503129	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
FUK	197258	hgsc.bcm.edu	37	16	70508769	70508769	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	72822586	72822586	+	Frame_Shift_Del	DEL	G	G	-	rs66799632		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
WDR59	79726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74922199	74922199	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	35	17	18	0	0
ZFP1	162239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75200759	75200759	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	7	5	0	0
CHST6	4166	hgsc.bcm.edu	37	16	75513043	75513043	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81181855	81181855	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZCCHC14	23174	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	87445168	87445168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	12	0	0	0
ZCCHC14	23174	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	87445179	87445179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	10	0	0	0
ZNF469	84627	hgsc.bcm.edu;bcgsc.ca	37	16	88504203	88504203	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZC3H18	124245	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	88691141	88691141	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PIEZO1	9780	hgsc.bcm.edu;broad.mit.edu	37	16	88787611	88787611	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PIEZO1	9780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	88787613	88787614	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GALNS	2588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88909119	88909119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
CPNE7	27132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89653121	89653121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
C17orf97	400566	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	260403	260405	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SHPK	23729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3518689	3518689	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NLGN2	57555	broad.mit.edu;bcgsc.ca	37	17	7311947	7311947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	1	4	0	0
C17orf74	201243	broad.mit.edu	37	17	7329040	7329040	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
TMEM102	284114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7339882	7339882	+	Missense_Mutation	SNP	G	G	A	rs141257669	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577018	7577018	+	Splice_Site	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	0	7	0	0
GUCY2D	3000	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7919549	7919549	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ALOXE3	59344	broad.mit.edu;bcgsc.ca	37	17	8013790	8013790	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ALOXE3	59344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8017851	8017851	+	Nonsense_Mutation	SNP	G	G	A	rs141340759		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ALOXE3	59344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8017917	8017917	+	Missense_Mutation	SNP	G	G	A	rs149284623		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PIK3R5	23533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	8783988	8783988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MYH13	8735	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10213064	10213064	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DNAH9	1770	bcgsc.ca	37	17	11607687	11607687	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TRPV2	51393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16336945	16336945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	92	9	83	0	0
CCDC144A	9720	hgsc.bcm.edu	37	17	16630989	16630989	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
USP32P1	162632	bcgsc.ca	37	17	16703371	16703371	+	RNA	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18022386	18022386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18025311	18025311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCDC144B	284047	hgsc.bcm.edu	37	17	18491040	18491040	+	RNA	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCDC144NL	339184	ucsc.edu;bcgsc.ca	37	17	20799304	20799304	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
FLJ36000	0	broad.mit.edu	37	17	21909166	21909167	+	RNA	DEL	TG	TG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TMEM199	147007	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26687565	26687565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	2	14	0	0
RAB34	83871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27041696	27041696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	14	0	0	0
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29528059	29528059	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29662047	29662047	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RHOT1	55288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30535210	30535210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	62	1	61	0	0
ZNF830	91603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33289639	33289639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	1	12	0	0
UNC45B	146862	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33513335	33513335	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PSMB3	5691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36912138	36912138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GJD3	125111	hgsc.bcm.edu	37	17	38519449	38519449	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
KRTAP1-3	81850	broad.mit.edu;bcgsc.ca	37	17	39190723	39190723	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KRTAP4-3	85290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	39324164	39324164	+	Silent	SNP	G	G	T	rs12600645	bycluster;byfrequency;byhapmap;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KRTAP9-9	81870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39411754	39411754	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
JUP	3728	ucsc.edu	37	17	39913949	39913949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	28	23	5	0	0
TUBG1	7283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40767023	40767023	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	37	1	36	0	0
ATXN7L3	56970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42274975	42274975	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC4A1	6521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42337788	42337788	+	Silent	SNP	G	G	A	rs55830560	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GPATCH8	23131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42475271	42475271	+	Missense_Mutation	SNP	C	C	T	rs200060507		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	25	24	1	0	0
ACBD4	79777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43214817	43214817	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LPO	4025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56344750	56344750	+	Silent	SNP	G	G	A	rs148241940	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56388274	56388274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
RNF43	54894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56435785	56435785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RAD51C	5889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56774113	56774113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	2	11	0	0
KIF19	124602	bcgsc.ca	37	17	72340954	72340954	+	Missense_Mutation	SNP	G	G	A	rs144185563		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TSEN54	283989	hgsc.bcm.edu	37	17	73512884	73512884	+	Missense_Mutation	SNP	T	T	G	rs8079373	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73839590	73839590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FOXJ1	2302	hgsc.bcm.edu	37	17	74133974	74133974	+	Silent	SNP	C	C	T	rs894542	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
UBE2O	63893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74387281	74387281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	15	0	15	0	0
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76455088	76455088	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C1QTNF1	114897	bcgsc.ca	37	17	77043989	77043989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	12	0	0	0
TSPAN10	83882	broad.mit.edu	37	17	79612317	79612317	+	RNA	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ARHGDIA	396	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79827660	79827660	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	294	31	262	0	1
CEP192	55125	hgsc.bcm.edu;broad.mit.edu	37	18	13059087	13059087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
POTEC	388468	broad.mit.edu	37	18	14533105	14533105	+	Missense_Mutation	SNP	G	G	C	rs76750627		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
CABYR	26256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21739840	21739840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47429038	47429038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	0	13	0	0
TXNL1	9352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	54293682	54293682	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NEDD4L	23327	broad.mit.edu	37	18	55816791	55816791	+	Silent	SNP	G	G	A	rs4149601	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ATP9B	374868	hgsc.bcm.edu	37	18	76829525	76829525	+	Missense_Mutation	SNP	A	A	G	rs4078115		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PPAP2C	8612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	288051	288051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	121	109	12	0	0
ODF3L2	284451	ucsc.edu;mdanderson.org	37	19	474730	474730	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	0	5	0	0
WDR18	57418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	985942	985942	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	55	26	29	0	0
SGTA	6449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2763724	2763724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	201	100	101	0	0
ZNF77	58492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2934175	2934175	+	Missense_Mutation	SNP	G	G	A	rs151130031	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	5	0	0	0
EEF2	1938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3979353	3979353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3761	2086	1673	0	2
ANKRD24	170961	hgsc.bcm.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CHAF1A	10036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4423813	4423813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
UHRF1	29128	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4930840	4930840	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	17	10	7	0	0
FUT6	2528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	5831650	5831650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MLLT1	4298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6213091	6213091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	9	7	0	0
GPR108	56927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	6731283	6731283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MBD3L3	653657	bcgsc.ca	37	19	7056621	7056621	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7622153	7622153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	69	35	34	0	0
LRRC8E	80131	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7965669	7965669	+	Silent	SNP	C	C	T	rs3745385	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	2	5	0	0
MAP2K7	5609	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7975940	7975940	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	24	10	14	0	0
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8138131	8138131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	rs890853	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANGPTL4	51129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8436389	8436389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	9	0	0	0
HNRNPM	4670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8531219	8531219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	126	57	69	0	0
PRAM1	84106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8563981	8563981	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ADAMTS10	81794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8645784	8645784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9019621	9019621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9084962	9084962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR1M1	125963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9204539	9204539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF317	57693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9271917	9271917	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	23	8	15	0	0
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9453476	9453476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	3	3	0	0
ZNF426	79088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9639084	9639084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	1	3	0	0
RAVER1	125950	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10439472	10439472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	69	37	32	0	0
PDE4A	5141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10578111	10578111	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
ATG4D	84971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10657607	10657607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	41	24	17	0	0
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11097117	11097117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	57	37	20	0	0
SMARCA4	6597	hgsc.bcm.edu	37	19	11098456	11098456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	25	15	10	0	0
KANK2	25959	hgsc.bcm.edu;broad.mit.edu	37	19	11304002	11304002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	25	23	2	0	0
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11326127	11326127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	8	3	0	0
EPOR	2057	ucsc.edu;bcgsc.ca	37	19	11492756	11492756	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	11	5	0	0
ZNF833P	401898	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11797189	11797189	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF823	55552	broad.mit.edu	37	19	11832936	11832936	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	10	0	0	0
ZNF441	126068	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	11892031	11892031	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
ZNF491	126069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11917409	11917409	+	Missense_Mutation	SNP	C	C	T	rs140071849	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12060900	12060900	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	4	6	0	0
ZNF878	729747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12155177	12155177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF44	51710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12386792	12386792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF563	147837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12430322	12430322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12637692	12637692	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	1	8	0	0
MAN2B1	4125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	12768936	12768936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	58	29	29	0	0
TRMT1	55621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13216335	13216335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	34	16	18	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13397604	13397604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RFX1	5989	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14074020	14074020	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	5	3	0	0
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14261780	14261780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	23	11	12	0	0
EMR2	30817	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14865828	14865828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR7A17	26333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14991440	14991440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SYDE1	85360	hgsc.bcm.edu	37	19	15221496	15221496	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
WIZ	58525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15535673	15535673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	30	30	0	0	0
CYP4F12	66002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15794437	15794437	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HAUS8	93323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17170457	17170457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MYO9B	4650	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17317488	17317488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	29	15	14	0	0
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17844087	17844087	+	Silent	SNP	C	C	T	rs113822615	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	39	36	3	0	0
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17953936	17953936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PDE4C	5143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18331093	18331093	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GDF1	2657	hgsc.bcm.edu	37	19	18980172	18980172	+	Missense_Mutation	SNP	G	G	A	rs4808863	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	0	6	0	0
SUGP2	10147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19115190	19115190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	21	9	11	1	0
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19337773	19337773	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	19338131	19338131	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19744710	19744710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	3	2	0	0
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	19748233	19748233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
ZNF486	90649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20307780	20307780	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
VSTM2B	342865	broad.mit.edu;mdanderson.org	37	19	30018287	30018287	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRP3	4037	hgsc.bcm.edu	37	19	33696354	33696354	+	Silent	SNP	C	C	T	rs3745977	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	25	9	16	0	0
CHST8	64377	hgsc.bcm.edu	37	19	34263134	34263134	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LSM14A	26065	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34687595	34687595	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	76	37	39	0	0
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34941214	34941214	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	78	47	31	0	0
SCGB2B2	284402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35085231	35085231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35625482	35625482	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	4	0	0	0
FFAR2	2867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35941567	35941567	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DMKN	93099	hgsc.bcm.edu	37	19	36002386	36002386	+	Missense_Mutation	SNP	C	C	T	rs117522133	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DMKN	93099	hgsc.bcm.edu	37	19	36002389	36002389	+	Missense_Mutation	SNP	C	C	T	rs142519211	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DMKN	93099	broad.mit.edu	37	19	36002401	36002401	+	Frame_Shift_Del	DEL	C	C	-	rs71940230	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DMKN	93099	broad.mit.edu	37	19	36002403	36002404	+	Frame_Shift_Del	DEL	GC	GC	-	rs71940230	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DMKN	93099	hgsc.bcm.edu	37	19	36002410	36002412	+	In_Frame_Del	DEL	CTG	CTG	-	rs71940230	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTG	CTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36210835	36210837	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36223774	36223774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	39	19	20	0	0
WDR62	284403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36574056	36574056	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	24	7	17	0	0
COX7A1	1346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36643303	36643303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF567	163081	broad.mit.edu;bcgsc.ca	37	19	37210811	37210811	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
ZNF793	390927	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38023351	38023351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	7	3	0	0
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38590772	38590772	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	1	5	0	0
GGN	199720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38875168	38875168	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RYR1	6261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39070652	39070652	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LGALS7	3963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39262626	39262626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
LGALS7	3963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39262667	39262667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
PAPL	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39591616	39591616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRFN1	57622	hgsc.bcm.edu	37	19	39805934	39805934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
AXL	558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41758838	41758838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	7	2	0	0
CEACAM5	1048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42224956	42224956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42838298	42838298	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42861562	42861562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PSG10P	653492	bcgsc.ca	37	19	43352179	43352179	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PSG6	5675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43411912	43411912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PSG7	5676	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43439806	43439806	+	RNA	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
IRGQ	126298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44096194	44096194	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
IRGQ	126298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44097165	44097165	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	5	8	0	0
IRGC	56269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44223111	44223111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
IRGC	56269	broad.mit.edu	37	19	44223898	44223898	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF155	7711	bcgsc.ca	37	19	44501240	44501240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44739706	44739706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	4	0	0	1
APOE	348	hgsc.bcm.edu	37	19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	rs429358	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	42	33	9	0	0
KLC3	147700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45851316	45851316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
ERCC1	2067	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45924593	45924593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	192	88	104	0	0
VASP	7408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46024603	46024603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	53	34	19	0	0
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47572589	47572589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DHX34	9704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47876940	47876940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	4	3	0	0
KDELR1	10945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48894556	48894556	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	816	440	376	0	0
LMTK3	114783	hgsc.bcm.edu	37	19	49002214	49002214	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FGF21	26291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49261316	49261316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
RUVBL2	10856	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49507564	49507564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	71	35	35	1	0
TEAD2	8463	hgsc.bcm.edu;bcgsc.ca	37	19	49850473	49850473	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FCGRT	2217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50017380	50017380	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50100497	50100497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	17	11	6	0	0
TSKS	60385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50245268	50245268	+	Silent	SNP	C	C	T	rs201242813	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
VRK3	51231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50498494	50498494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	39	23	16	0	0
POLD1	5424	hgsc.bcm.edu;bcgsc.ca	37	19	50918843	50918844	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	51015773	51015773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
SHANK1	50944	hgsc.bcm.edu	37	19	51171188	51171188	+	Silent	SNP	G	G	A	rs750578		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51630290	51630290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52003397	52003397	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FPR3	2359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52327406	52327406	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53612773	53612773	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	27	24	3	0	0
ZNF331	55422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54080878	54080878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	15	15	0	0	0
NLRP12	91662	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	54312911	54312911	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CACNG7	59284	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54445384	54445384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TFPT	29844	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54617860	54617860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	64	28	36	0	0
LENG9	94059	hgsc.bcm.edu	37	19	54974329	54974329	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55494293	55494293	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
EPS8L1	54869	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55598758	55598758	+	Silent	SNP	G	G	T	rs184296169	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	2	7	0	0
TNNI3	7137	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55667611	55667611	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	15	11	4	0	0
PPP6R1	22870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55742232	55742232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	131	62	69	0	0
ZNF579	163033	hgsc.bcm.edu	37	19	56090309	56090309	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	4	2	0	0
ZNF784	147808	hgsc.bcm.edu	37	19	56133258	56133258	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56473553	56473553	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF71	58491	broad.mit.edu	37	19	57133639	57133639	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	27	27	0	0	0
MZF1	7593	ucsc.edu;bcgsc.ca	37	19	59073424	59073424	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	33	15	18	0	0
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1983497	1983497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TSSC1	7260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	3193197	3193197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	46	18	28	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
NTSR2	23620	hgsc.bcm.edu	37	2	11810064	11810064	+	Silent	SNP	G	G	T	rs11556847		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NBAS	51594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	15694258	15694258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17906608	17906608	+	Silent	SNP	C	C	T	rs144198428	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	5	9	0	0
WDR35	57539	ucsc.edu;bcgsc.ca	37	2	20174293	20174293	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21233246	21233246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NCOA1	8648	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24929918	24929918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	22	11	11	0	0
PTRHD1	391356	bcgsc.ca	37	2	25013384	25013384	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	119	81	38	0	0
OTOF	9381	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26707488	26707488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DPYSL5	56896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27121385	27121385	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC5A6	8884	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27428302	27428302	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CAD	790	hgsc.bcm.edu;bcgsc.ca	37	2	27455435	27455435	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	28719029	28719029	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CAPN14	440854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31409307	31409307	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC30A6	55676	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32417996	32417996	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MYADML	151325	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	33952146	33952146	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CRIM1	51232	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	36740805	36740805	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	12	1	0	0
STRN	6801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37096725	37096725	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	17	9	8	0	0
ABCG5	64240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	44047175	44047175	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRPPRC	10128	hgsc.bcm.edu;bcgsc.ca	37	2	44145165	44145165	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ATP6V1E2	90423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	46739273	46739273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	4	2	0	0
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54152700	54152700	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	31	20	11	0	0
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62067294	62067294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
AFTPH	54812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	64780103	64780103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	5	4	0	0
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	68368892	68368892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	18	17	1	0	0
AAK1	22848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69746290	69746290	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	3	8	0	0
EXOC6B	23233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	72742236	72742236	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	6	14	0	0
EGR4	1961	broad.mit.edu;mdanderson.org	37	2	73518917	73518917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73717935	73717935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	2	2	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	5	0	0	0
INO80B-WBP1	0	bcgsc.ca	37	2	74687265	74687265	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	2	3	0	0
CCDC142	84865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74709403	74709403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
TTC31	64427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74720124	74720124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	24	7	17	0	0
LOXL3	84695	hgsc.bcm.edu;bcgsc.ca	37	2	74763924	74763924	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HK2	3099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75104357	75104357	+	Missense_Mutation	SNP	G	G	A	rs28363015	bycluster;byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	67	28	39	0	0
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	84771614	84771614	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86371958	86371958	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	283	101	182	0	0
KDM3A	55818	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86711133	86711133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	24	18	5	1	0
CD8B	926	hgsc.bcm.edu	37	2	87088964	87088964	+	Silent	SNP	A	A	G	rs62146888	byfrequency;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88857349	88857349	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ACTR3BP2	440888	ucsc.edu;bcgsc.ca	37	2	92129585	92129585	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANKRD39	51239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97519168	97519168	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	3	9	0	0
ZAP70	7535	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	98340777	98340777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	101652587	101652587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	10	0	0	0
MAP4K4	9448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102483026	102483026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	7	6	0	0
SLC9A2	6549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103300745	103300745	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
LOC100287010	0	bcgsc.ca	37	2	105012410	105012410	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC5A7	60482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108609479	108609479	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110902136	110902136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
IL37	27178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113671396	113671396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116101426	116101426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	3	4	0	0
INHBB	3625	hgsc.bcm.edu	37	2	121103890	121103890	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
INHBB	3625	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	121103925	121103925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	8	0	0	0
INHBB	3625	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	121103941	121103941	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	7	0	0	0
INHBB	3625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	121103965	121103965	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	9	0	0	0
INHBB	3625	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	121104035	121104035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	9	0	0	0
INHBB	3625	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121106703	121106703	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	70	64	6	0	0
CLASP1	23332	ucsc.edu;bcgsc.ca	37	2	122216419	122216419	+	Silent	SNP	A	A	G	rs2304560	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
AMER3	205147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131521542	131521542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
AMER3	205147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131521962	131521962	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ARHGEF4	50649	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	131797625	131797625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LOC150776	0	bcgsc.ca	37	2	132259144	132259144	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137814011	137814011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	7	7	0	0
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141259364	141259364	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141707930	141707930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GALNT5	11227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158115854	158115854	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	159954275	159954275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	3	2	0	0
WDSUB1	151525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160132121	160132121	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	10	10	0	0
MARCH7	64844	hgsc.bcm.edu;bcgsc.ca	37	2	160604680	160604680	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160885416	160885416	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TBR1	10716	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	162274227	162274227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162719408	162719408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FIGN	55137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	164466944	164466944	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
SCN2A	6326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166153538	166153538	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166226748	166226748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GALNT3	2591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166611442	166611442	+	Nonsense_Mutation	SNP	G	G	C	rs144331248	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GALNT3	2591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166621434	166621434	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TTC21B	79809	ucsc.edu;bcgsc.ca	37	2	166781188	166781188	+	Missense_Mutation	SNP	G	G	A	rs16851307	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	167330837	167330837	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168099879	168099879	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NOSTRIN	115677	hgsc.bcm.edu;bcgsc.ca	37	2	169699563	169699563	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DHRS9	10170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169948425	169948425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170127462	170127462	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HNRNPA3	220988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178083867	178083867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	279	163	116	0	0
AGPS	8540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178285080	178285080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179401241	179401241	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179410344	179410344	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179445148	179445148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FAM171B	165215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187627230	187627230	+	Missense_Mutation	SNP	G	G	A	rs144563922		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
TFPI	7035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	188348876	188348876	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	11	0	0	0
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190436531	190436531	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	10	0	0	0
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190436542	190436542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	21	20	1	0	0
DNAH7	56171	hgsc.bcm.edu	37	2	196788374	196788374	+	Frame_Shift_Del	DEL	T	T	-	rs71015736		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196799351	196799351	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196837087	196837087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197143276	197143276	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
ANKRD44	91526	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197865169	197865169	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	3	1	0	0
MARS2	92935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198571904	198571904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	47	26	21	0	0
C2orf69	205327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	200789972	200789972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	36	21	15	0	0
BZW1	9689	hgsc.bcm.edu	37	2	201677182	201677182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MPP4	58538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202520986	202520986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ALS2	57679	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202619338	202619338	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	4	0	0	0
FZD7	8324	bcgsc.ca	37	2	202900893	202900893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	2	5	0	0
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	204032081	204032081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207635989	207635989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	56	27	29	0	0
PLEKHM3	389072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	208725974	208725974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
CRYGD	1421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	208986447	208986447	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ERBB4	2066	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	212589889	212589889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216244003	216244003	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	212	143	68	0	1
TNS1	7145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218686598	218686598	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	30	17	13	0	0
TMBIM1	64114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219146728	219146728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	44	15	29	0	0
SLC11A1	6556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219251383	219251383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
LOC100129175	0	bcgsc.ca	37	2	219871042	219871042	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CHPF	79586	hgsc.bcm.edu	37	2	220406784	220406784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	88	44	44	0	0
SGPP2	130367	ucsc.edu;bcgsc.ca	37	2	223423173	223423173	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	33	12	21	0	0
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225652093	225652093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	15	9	6	0	0
SLC16A14	151473	hgsc.bcm.edu;bcgsc.ca	37	2	230911202	230911203	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233651868	233651868	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
INPP5D	3635	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234091058	234091058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TRPM8	79054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234854560	234854560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRRFIP1	9208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	238672429	238672431	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SCLY	51540	broad.mit.edu;bcgsc.ca	37	2	238990850	238990850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TRAF3IP1	26146	broad.mit.edu	37	2	239237830	239237830	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240085574	240085574	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	4	2	0	0
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241463346	241463346	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	3	6	0	0
RNPEPL1	57140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241516387	241516387	+	Missense_Mutation	SNP	C	C	T	rs193086300	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	113	58	55	0	0
GPR35	2859	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241569558	241569558	+	Silent	SNP	G	G	A	rs201529824		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241737134	241737134	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
THAP4	51078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242573029	242573029	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	87	52	35	0	0
D2HGDH	728294	hgsc.bcm.edu	37	2	242674750	242674750	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
ANGPT4	51378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	896570	896570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FASTKD5	60493	hgsc.bcm.edu;bcgsc.ca	37	20	3128001	3128001	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ATRN	8455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3546042	3546042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	26	2	24	0	0
CENPB	1059	ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3765726	3765726	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	90	9	81	0	0
SEL1L2	80343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13850197	13850197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CD93	22918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	23065518	23065518	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623164	29623164	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	133	133	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623179	29623179	+	RNA	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	98	98	0	0	0
FAM83C	128876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33874418	33874418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GDF5	8200	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34022048	34022048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NDRG3	57446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35288763	35288763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	94	94	0	0	0
NDRG3	57446	hgsc.bcm.edu	37	20	35350111	35350111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	30	30	0	0	0
MROH8	140699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35776252	35776252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
RPN2	6185	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35833240	35833240	+	Missense_Mutation	SNP	C	C	T	rs145802754		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	473	256	216	0	1
RPN2	6185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35833294	35833294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TGM2	7052	broad.mit.edu;bcgsc.ca	37	20	36767875	36767875	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	65	63	2	0	0
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36997687	36997687	+	Missense_Mutation	SNP	C	C	T	rs146665734	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39830791	39830791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	25	16	9	0	0
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40713472	40713472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
JPH2	57158	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42788359	42788359	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
WISP2	8839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43348580	43348580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	100	90	10	0	0
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43726370	43726370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	0	7	0	0
ZSWIM3	140831	broad.mit.edu	37	20	44486488	44486488	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
ZNF335	63925	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44586256	44586256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
ZMYND8	23613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45865241	45865241	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	21	11	10	0	0
KCNB1	3745	ucsc.edu;bcgsc.ca	37	20	47991197	47991197	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49508387	49508387	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	104	50	54	0	0
ZFP64	55734	broad.mit.edu;bcgsc.ca	37	20	50769338	50769338	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	3	6	0	0
TSHZ2	128553	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	51872146	51872146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	5	4	0	0
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	57429537	57429537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SS18L1	26039	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	60738545	60738545	+	Silent	SNP	G	G	A	rs149920292	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	4	3	0	0
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	60887715	60887715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OGFR	11054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61444339	61444339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	23	14	9	0	0
DIDO1	11083	broad.mit.edu	37	20	61511207	61511207	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SRMS	6725	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	62178771	62178773	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TEKT4P2	100132288	bcgsc.ca	37	21	9912183	9912183	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
TPTE	7179	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10916394	10916394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	6	0	0	0
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15481359	15481359	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NRIP1	8204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	16337877	16337877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	5	4	0	0
ADAMTS1	9510	hgsc.bcm.edu	37	21	28217129	28217129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	6	0	0	0
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32585718	32585718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SCAF4	57466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33063193	33063193	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	14	6	0	0
SCAF4	57466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33068463	33068463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	17	7	10	0	0
SON	6651	ucsc.edu;bcgsc.ca	37	21	34922970	34922970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	39	20	19	0	0
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35166743	35166743	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	11	3	0	0
CBR3-AS1	100506428	broad.mit.edu	37	21	37518894	37518894	+	RNA	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43510406	43510406	+	Splice_Site	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43531012	43531012	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
UBASH3A	53347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43864737	43864737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
DNMT3L	29947	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45666373	45666373	+	Silent	SNP	C	C	T	rs145238695	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45744513	45744513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	184	112	72	0	0
KRTAP10-2	386679	hgsc.bcm.edu;ucsc.edu	37	21	45970774	45970774	+	Missense_Mutation	SNP	G	G	A	rs76536096	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KRTAP10-2	386679	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	45971060	45971060	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KRTAP10-4	386672	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45994477	45994477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KRTAP10-7	386675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46020976	46020976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KRTAP10-9	386676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46047555	46047555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
POFUT2	23275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46689778	46689778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	54	26	28	0	0
COL18A1-AS1	378832	bcgsc.ca	37	21	46842288	46842288	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PCBP3	54039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47321002	47321002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	1	2	0	0
PCNT	5116	hgsc.bcm.edu	37	21	47836750	47836750	+	Silent	SNP	T	T	C	rs61738290	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PCNT	5116	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47858133	47858133	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	30	8	22	0	0
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17073304	17073304	+	Missense_Mutation	SNP	A	A	G	rs140831516	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17472963	17472963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
IL17RA	23765	hgsc.bcm.edu	37	22	17590180	17590180	+	Missense_Mutation	SNP	G	G	A	rs41323645		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18301894	18301894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TUBA8	51807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	18609562	18609562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	10	0	0	0
CLTCL1	8218	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19207427	19207427	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	29	19	10	0	0
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	19373067	19373067	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TRMT2A	27037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	20100332	20100332	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KLHL22	84861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20812147	20812147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	31	18	13	0	0
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21172828	21172828	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
AIFM3	150209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21334397	21334397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	3	2	0	0
THAP7-AS1	439931	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21363847	21363847	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HIC2	23119	hgsc.bcm.edu	37	22	21799659	21799659	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCDC116	164592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21988695	21988695	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCDC116	164592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21989306	21989306	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
MAPK1	5594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22153374	22153374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	128	71	56	0	1
PPM1F	9647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22277674	22277674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	7	13	0	0
BCR	613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	23637231	23637231	+	Silent	SNP	G	G	A	rs200598253		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	100	50	50	0	0
MIF	4282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	24236679	24236679	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1773	1772	0	0	1
MIF	4282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	24236682	24236682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1832	1826	4	1	0
MIF	4282	hgsc.bcm.edu	37	22	24237111	24237111	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4238	1876	2358	2	2
CRYBB3	1417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25601272	25601272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
TTC28-AS1	284900	bcgsc.ca	37	22	28385814	28385814	+	RNA	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ASCC2	84164	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30197089	30197089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LIF	3976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	30639991	30639991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
PATZ1	23598	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31740473	31740473	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	11	9	0	0
PATZ1	23598	broad.mit.edu;bcgsc.ca	37	22	31741473	31741473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	1	4	0	0
MCM5	4174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	35815946	35815946	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	84	40	44	0	0
APOL6	80830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36055125	36055125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	3	6	0	0
FOXRED2	80020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36902258	36902258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	21	14	7	0	0
TEX33	339669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37398216	37398216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SSTR3	6753	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	37602677	37602677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37891531	37891531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GCAT	23464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38205970	38205970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GALR3	8484	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	38221167	38221167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TMEM184B	25829	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38620883	38620883	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	52	27	25	0	0
DNAJB7	150353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41257875	41257877	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
L3MBTL2	83746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41621937	41621937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
CHADL	150356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	41631316	41631316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FAM109B	150368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42473559	42473559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
A4GALT	53947	hgsc.bcm.edu;broad.mit.edu	37	22	43089757	43089757	+	Frame_Shift_Del	DEL	G	G	-	rs67879429		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PPARA	5465	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46627995	46627995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	1	2	0	0
PKDREJ	10343	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46654833	46654833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46657944	46657944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	46658470	46658470	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46835094	46835094	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CELSR1	9620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46931004	46931004	+	Silent	SNP	C	C	T	rs200980756		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TRABD	80305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50636363	50636363	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	21	9	12	0	0
MAPK11	5600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50705599	50705599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51160574	51160574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	3	10	0	0
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9488930	9488930	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	0	8	0	0
RFTN1	23180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	16475383	16475383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	10	1	0	0
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	29941226	29941226	+	Missense_Mutation	SNP	C	C	T	rs202069394		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	30903251	30903251	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CMTM8	152189	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	32398985	32398985	+	Missense_Mutation	SNP	A	A	T	rs141869614	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	33	6	27	0	0
FBXL2	25827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33419633	33419633	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
UBP1	7342	bcgsc.ca	37	3	33458280	33458280	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PDCD6IP	10015	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	33883509	33883509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	73	7	66	0	0
MLH1	4292	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37083763	37083763	+	Nonsense_Mutation	SNP	G	G	T	rs63751081		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38921457	38921457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ULK4	54986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41759264	41759264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
HHATL	57467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42738492	42738492	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIAA1143	57456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44803069	44803069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	39	5	34	0	0
CCR9	10803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45942503	45942503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NBEAL2	23218	ucsc.edu;bcgsc.ca	37	3	47041809	47041809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
KLHL18	23276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47378243	47378243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47458817	47458817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	197	4	193	0	0
ARIH2OS	646450	hgsc.bcm.edu	37	3	48956411	48956411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	0	9	0	0
LAMB2P1	22973	bcgsc.ca	37	3	49191034	49191034	+	RNA	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
UBA7	7318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49846424	49846424	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	3	11	0	0
DOCK3	1795	hgsc.bcm.edu;bcgsc.ca	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RRP9	9136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51968549	51968549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	22	2	20	0	0
ABHD14A-ACY1	100526760	bcgsc.ca	37	3	52014805	52014805	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DUSP7	1849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52085041	52085041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	3	2	0	0
DUSP7	1849	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	52088244	52088244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52438537	52438537	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	2	2	0	0
PHF7	51533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52457218	52457218	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	1	6	0	0
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52543970	52543970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	4	0	0	0
DENND6A	201627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57616494	57616494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	0	6	0	0
ABHD6	57406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58255106	58255106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	31	0	31	0	0
PTPRG-AS1	100506994	bcgsc.ca	37	3	62248700	62248700	+	RNA	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
PRICKLE2	166336	broad.mit.edu	37	3	64133284	64133284	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CNTN3	5067	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	74548830	74548830	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77147394	77147394	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GBE1	2632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	81635291	81635291	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	75	1	74	0	0
ABI3BP	25890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100508327	100508327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	0	4	0	0
WDR52	55779	bcgsc.ca	37	3	113145006	113145006	+	Silent	SNP	C	C	T	rs73239107	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LSAMP	4045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	115529261	115529261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRRC58	116064	hgsc.bcm.edu	37	3	120068007	120068007	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRRC58	116064	hgsc.bcm.edu	37	3	120068022	120068022	+	Silent	SNP	C	C	G	rs6770482		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	125298757	125298757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	0	12	0	0
ISY1	57461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128853775	128853775	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	53	11	42	0	0
TMCC1	23023	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129546844	129546844	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	1	6	0	0
ATP2C1	27032	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130720162	130720162	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	30	4	26	0	0
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132179933	132179933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	1	2	0	0
CCRL1	51554	hgsc.bcm.edu	37	3	132321037	132321037	+	RNA	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TF	7018	ucsc.edu;bcgsc.ca	37	3	133467410	133467410	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TSC22D2	9819	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	150127417	150127417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCNL1	57018	hgsc.bcm.edu;mdanderson.org	37	3	156877880	156877880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	0	9	0	0
TRIM59	286827	broad.mit.edu	37	3	160156368	160156368	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	164905717	164905717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PDCD10	11235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167414893	167414893	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	16	1	15	0	0
LRRC34	151827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169514632	169514632	+	Missense_Mutation	SNP	G	G	A	rs201395437		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
GHSR	2693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172165571	172165571	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NAALADL2	254827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	175165096	175165096	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	0	4	0	0
ATP11B	23200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	182538053	182538053	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
VWA5B2	90113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183953046	183953046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	27	0	27	0	0
VWA5B2	90113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183957477	183957477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
VWA5B2	90113	hgsc.bcm.edu	37	3	183959354	183959354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	35	0	35	0	0
ALG3	10195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183962454	183962454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	64	4	60	0	0
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184049834	184049834	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	287	267	19	0	1
POLR2H	5437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184083008	184083008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
FGF12	2257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	192053209	192053209	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ATP13A3	79572	bcgsc.ca	37	3	194162115	194162115	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	195511828	195511828	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PIGG	54872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	527709	527709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	50	23	27	0	0
IDUA	3425	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	996231	996231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	4	4	0	0
SPON2	10417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1164348	1164348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	13	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388817	1388817	+	Missense_Mutation	SNP	C	C	G	rs71299249	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	64	64	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388819	1388819	+	Missense_Mutation	SNP	T	T	C	rs144797159	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	59	59	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	2	11	0	0
NELFA	7469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1989663	1989663	+	Missense_Mutation	SNP	G	G	A	rs145121989		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	38	12	25	0	1
TNIP2	79155	hgsc.bcm.edu	37	4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	rs74548850	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	8	2	0	0
NOP14-AS1	317648	bcgsc.ca	37	4	2948041	2948041	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NOP14	8602	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2948138	2948138	+	Splice_Site	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	0	7	0	0
GRK4	2868	hgsc.bcm.edu;broad.mit.edu	37	4	3015470	3015470	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3137678	3137678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	5	4	0	0
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3240681	3240681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	72	38	34	0	0
RGS12	6002	broad.mit.edu	37	4	3430399	3430399	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	3432431	3432431	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DOK7	285489	hgsc.bcm.edu	37	4	3495047	3495047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ADRA2C	152	bcgsc.ca	37	4	3768889	3768889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	2	7	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228472	4228472	+	Silent	SNP	T	T	C	rs76810534		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044380	7044380	+	Missense_Mutation	SNP	C	C	T	rs871134		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GPR78	27201	hgsc.bcm.edu	37	4	8583357	8583357	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HS3ST1	9957	broad.mit.edu	37	4	11401093	11401093	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LAP3	51056	hgsc.bcm.edu;bcgsc.ca	37	4	17585226	17585226	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KCNIP4	80333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20731736	20731736	+	Missense_Mutation	SNP	C	C	T	rs149977507		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36214032	36214032	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TBC1D1	23216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38119794	38119794	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	19	13	6	0	0
LIAS	11019	broad.mit.edu	37	4	39462464	39462464	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LIAS	11019	hgsc.bcm.edu;bcgsc.ca	37	4	39466916	39466916	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39868540	39868540	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	55	39	16	0	0
CHRNA9	55584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40339332	40339332	+	Silent	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CWH43	80157	hgsc.bcm.edu;bcgsc.ca	37	4	49009291	49009291	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55153648	55153648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SRP72	6731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57357651	57357651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	75	35	40	0	0
IGFBP7	3490	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	57907052	57907052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1724	1722	1	0	1
CENPC1	1060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68380317	68380317	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	5	2	0	0
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68530972	68530972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	25	11	14	0	0
TMPRSS11E	28983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69343139	69343139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
UGT2B10	7365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69682216	69682216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ODAM	54959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71068483	71068483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CABS1	85438	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71201374	71201374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73148985	73148985	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
AFP	174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74303978	74303978	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MTHFD2L	441024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75041061	75041061	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
FAM47E-STBD1	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	77177441	77177441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
SHROOM3	57619	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	77692038	77692038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79258865	79258865	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79832494	79832494	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	10	10	0	0
SEC31A	22872	hgsc.bcm.edu	37	4	83785565	83785565	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SEC31A	22872	bcgsc.ca	37	4	83795857	83795857	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	42	12	30	0	0
HELQ	113510	bcgsc.ca	37	4	84362474	84362474	+	Missense_Mutation	SNP	C	C	T	rs142206532	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	3	6	0	0
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87643506	87643506	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	1	4	0	0
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87643549	87643549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
DSPP	1834	broad.mit.edu;ucsc.edu	37	4	88537441	88537441	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PKD2	5311	bcgsc.ca	37	4	88986559	88986559	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FAM13A	10144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89679992	89679992	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	4	0	0	0
GRID2	2895	ucsc.edu;bcgsc.ca	37	4	94436526	94436526	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	94547465	94547465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PDLIM5	10611	ucsc.edu;bcgsc.ca	37	4	95496845	95496845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	6	1	0	0
ADH7	131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100349715	100349715	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	104066472	104066472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	106196337	106196337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110460806	110460806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	65	36	29	0	0
PITX2	5308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	111539802	111539802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C4orf21	55345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	113484389	113484389	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
NDST3	9348	bcgsc.ca	37	4	118975230	118975230	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PRDM5	11107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	121616316	121616316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126373258	126373258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PCDH10	57575	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134071935	134071935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MAML3	55534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	140811799	140811799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	1	2	0	0
HHIP	64399	broad.mit.edu	37	4	145629444	145629444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	149041326	149041326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DCLK2	166614	hgsc.bcm.edu;bcgsc.ca	37	4	151000382	151000384	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PET112	5188	broad.mit.edu	37	4	152638110	152638110	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	25	25	0	0	0
TLR2	7097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	154624389	154624392	+	Frame_Shift_Del	DEL	TTAC	TTAC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TTAC	TTAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GUCY1A3	2982	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	156638325	156638325	+	Silent	SNP	C	C	T	rs112384014		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	5	1	0	0
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	159092094	159092094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	4	5	0	0
NAF1	92345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	164050138	164050138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164271440	164271440	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
AGA	175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	178358622	178358622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	1	19	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187532668	187532668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	2	8	0	0
SDHA	6389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	236583	236583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	283	149	134	0	0
SLC12A7	10723	broad.mit.edu;bcgsc.ca	37	5	1064007	1064007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	22	10	12	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13701414	13701414	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13809182	13809182	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DNAH5	1767	bcgsc.ca	37	5	13830255	13830255	+	Silent	SNP	C	C	T	rs141459197		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16711035	16711035	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	6	0	0	0
ZFR	51663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32355934	32355934	+	Missense_Mutation	SNP	C	C	T	rs55686708	bycluster	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	233	122	111	0	0
ADAMTS12	81792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33881505	33881505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
BRIX1	55299	ucsc.edu;bcgsc.ca	37	5	34915889	34915889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	42	19	23	0	0
SLC1A3	6507	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	36677261	36677261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	5	6	0	0
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36953863	36953863	+	Splice_Site	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MROH2B	133558	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41000914	41000914	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
OXCT1	5019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41739509	41739509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	0	4	0	0
PAIP1	10605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43539100	43539100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	167	93	74	0	0
PAIP1	10605	broad.mit.edu;mdanderson.org	37	5	43556100	43556100	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PELO	53918	hgsc.bcm.edu;broad.mit.edu	37	5	52096425	52096426	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SETD9	133383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56207218	56207218	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	0	4	0	0
MIER3	166968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56234785	56234785	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	5	4	0	0
SREK1IP1	285672	broad.mit.edu	37	5	64023941	64023941	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65058794	65058794	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC30A5	64924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68412226	68412226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SMN1	6606	ucsc.edu;bcgsc.ca	37	5	70247769	70247769	+	Missense_Mutation	SNP	G	G	A	rs76163360	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
COL4A3BP	10087	hgsc.bcm.edu;bcgsc.ca	37	5	74807619	74807621	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGG	AGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74869656	74869656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	15	5	0	0
IQGAP2	10788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75896750	75896750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
MSH3	4437	broad.mit.edu	37	5	79950742	79950750	+	In_Frame_Del	DEL	CCCCCAGCT	CCCCCAGCT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LOC100131067	0	bcgsc.ca	37	5	80555111	80555111	+	RNA	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
VCAN	1462	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82816109	82816109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CETN3	1070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	89703515	89703515	+	Splice_Site	SNP	C	C	T	rs143515805	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89990218	89990218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NR2F1	7025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	92923842	92923842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	4	3	0	0
KIAA0825	285600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	93807267	93807267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ERAP1	51752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96117463	96117463	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	4	3	0	0
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96315242	96315242	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96315342	96315342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	4	4	0	0
SLCO4C1	353189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101631819	101631819	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112178919	112178919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	31	20	11	0	0
AQPEP	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	115320392	115320392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SEMA6A	57556	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	115782363	115782363	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	40	17	23	0	0
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115815886	115815886	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	35	22	13	0	0
FAM170A	340069	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118970154	118970154	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	123976977	123976977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	8	2	0	0
SLC12A2	6558	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	127493843	127493843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RAPGEF6	51735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	130766961	130766961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	5	3	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PCBD2	84105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134296370	134296370	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	5	6	0	0
TGFBI	7045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135396593	135396593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	87	83	4	0	0
TRPC7	57113	ucsc.edu;bcgsc.ca	37	5	135587359	135587359	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137722268	137722268	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	21	11	10	0	0
PROB1	389333	hgsc.bcm.edu;mdanderson.org	37	5	138728085	138728085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
PCDHA7	56141	bcgsc.ca	37	5	140215497	140215497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	1	2	0	0
PCDHB2	56133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140475545	140475545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
PCDHB5	26167	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140516394	140516394	+	Nonsense_Mutation	SNP	C	C	T	rs201677139	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	98	67	31	0	0
PCDHB5	26167	hgsc.bcm.edu	37	5	140516906	140516906	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	51	29	22	0	0
PCDHB6	56130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140531452	140531452	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PCDHB7	56129	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140554289	140554289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
PCDHB13	56123	hgsc.bcm.edu	37	5	140595600	140595600	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	34	26	8	0	0
PCDHB18	54660	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140615479	140615479	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
PCDHGA3	56112	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140724077	140724077	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
PCDHGB6	56100	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140789294	140789294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
RELL2	285613	hgsc.bcm.edu;bcgsc.ca	37	5	141017910	141017912	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NR3C1	2908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	142662181	142662181	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	29	12	17	0	0
GRXCR2	643226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145246099	145246099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145634509	145634509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145647328	145647328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145834680	145834680	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	5	2	0	0
TCERG1	10915	hgsc.bcm.edu	37	5	145838674	145838674	+	Silent	SNP	A	A	G	rs111879925	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	14	0	0	0
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145849290	145849290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	5	9	0	0
JAKMIP2-AS1	153469	bcgsc.ca	37	5	147011094	147011094	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147805102	147805102	+	Missense_Mutation	SNP	C	C	T	rs144744644		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	32	20	12	0	0
PPARGC1B	133522	broad.mit.edu	37	5	149213123	149213123	+	Missense_Mutation	SNP	C	C	T	rs201665839		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	5	0	0	0
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149510124	149510124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	75	74	0	1	0
GALNT10	55568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	153760166	153760166	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LARP1	23367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154173383	154173383	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LARP1	23367	hgsc.bcm.edu	37	5	154173385	154173390	+	In_Frame_Del	DEL	CGTGGC	CGTGGC	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CGTGGC	CGTGGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LARP1	23367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154173390	154173390	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CNOT8	9337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154254927	154254927	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	119	61	58	0	0
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158140042	158140042	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	9	4	0	0
TTC1	7265	hgsc.bcm.edu;bcgsc.ca	37	5	159437837	159437837	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	166711961	166711961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	1	2	0	0
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167617506	167617506	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLIT3	6586	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	168201335	168201335	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	90	44	46	0	0
TLX3	30012	broad.mit.edu;bcgsc.ca	37	5	170737206	170737206	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	15	3	11	1	0
UBTD2	92181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	171661284	171661284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	7	5	0	0
MSX2	4488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	174152037	174152037	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CLTB	1212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	175824632	175824632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	992	445	546	1	0
FAM153C	653316	bcgsc.ca	37	5	177462725	177462725	+	RNA	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
AGXT2L2	85007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177649506	177649506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	7	1	0	0
ZNF454	285676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178392351	178392351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178507040	178507040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
BTNL9	153579	hgsc.bcm.edu	37	5	180486404	180486404	+	Missense_Mutation	SNP	C	C	T	rs186444058		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
OR2V2	285659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180582175	180582175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR2V2	285659	hgsc.bcm.edu;broad.mit.edu	37	5	180582745	180582745	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SERPINB1	1992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	2836398	2836398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	25	8	17	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086072	5086072	+	Missense_Mutation	SNP	A	A	C	rs34969826		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FARS2	10667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	5369294	5369294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	23	14	9	0	0
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7585739	7585739	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	22	5	17	0	0
BMP6	654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7880448	7880448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	5	0	0	0
BLOC1S5-TXNDC5	100526836	bcgsc.ca	37	6	7889175	7889175	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BLOC1S5	63915	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	8041439	8041439	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	20	10	10	0	0
GCNT2	2651	broad.mit.edu	37	6	10556944	10556944	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KDM1B	221656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	18215282	18215282	+	Silent	SNP	C	C	T	rs144521010	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	57	28	29	0	0
CMAHP	8418	bcgsc.ca	37	6	25110348	25110348	+	RNA	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BTN2A3P	54718	bcgsc.ca	37	6	26426403	26426403	+	RNA	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZSCAN26	7741	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28244219	28244219	+	Silent	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	2	6	0	0
RNF39	80352	hgsc.bcm.edu	37	6	30039373	30039373	+	Missense_Mutation	SNP	G	G	C	rs61754472		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	4	0	0	0
C6orf15	29113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31079664	31079664	+	Missense_Mutation	SNP	C	C	T	rs147112509	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCHCR1	54535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31112778	31112778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	27	15	12	0	0
VARS	7407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31747403	31747403	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C4A	720	bcgsc.ca;mdanderson.org	37	6	31994861	31994861	+	Missense_Mutation	SNP	C	C	T	rs201414896		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	107	27	80	0	0
C4A	720	bcgsc.ca	37	6	31997544	31997544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	206	51	155	0	0
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32012914	32012914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	78	59	19	0	0
PPT2-EGFL8	0	bcgsc.ca	37	6	32135571	32135571	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
HLA-DOB	3112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32782355	32782355	+	Missense_Mutation	SNP	G	G	A	rs201263357		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32820954	32820954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	37	26	11	0	0
ZBTB22	9278	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33283545	33283545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	29	20	9	0	0
KIFC1	3833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33373046	33373046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	32	25	7	0	0
CUTA	51596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33385290	33385290	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	790	507	281	0	2
CUTA	51596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33385455	33385455	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	484	199	285	0	0
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33657170	33657170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	19	4	15	0	0
ANKS1A	23294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	34951143	34951143	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38840860	38840860	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41060791	41060791	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	22	7	15	0	0
TRERF1	55809	bcgsc.ca;mdanderson.org	37	6	42236625	42236625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	1	2	0	0
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42610157	42610157	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GLTSCR1L	23506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42797332	42797332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	18	9	9	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	21	0	21	0	0
SRF	6722	hgsc.bcm.edu	37	6	43139653	43139653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GTPBP2	54676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43592287	43592287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	53	23	30	0	0
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44223336	44223336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	102	60	42	0	0
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46658119	46658119	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C6orf141	135398	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	49518618	49518618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51695744	51695744	+	Silent	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ELOVL5	60481	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	53140004	53140004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	301	179	122	0	0
MLIP	90523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	53883833	53883833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HMGCLL1	54511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55304258	55304258	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RNU6-71	100873774	bcgsc.ca	37	6	56368912	56368912	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56371582	56371582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RNU6-71	100873774	bcgsc.ca	37	6	56374689	56374689	+	RNA	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RNU6-71	100873774	bcgsc.ca	37	6	56425083	56425083	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	71138076	71138076	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72960679	72960679	+	Missense_Mutation	SNP	A	A	G	rs201901272	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72968725	72968725	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73000437	73000437	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KCNQ5	56479	hgsc.bcm.edu	37	6	73332040	73332040	+	Silent	SNP	C	C	G	rs3734212	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SENP6	26054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76380283	76380283	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	25	15	10	0	0
HMGN3	9324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	79913320	79913320	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	260	205	55	0	0
DOPEY1	23033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	83849997	83849997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	87967774	87967774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	7	5	0	0
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90377855	90377855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	1	8	0	0
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107811894	107811894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
MICAL1	64780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109773753	109773753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	2	2	0	0
ZBTB24	9841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109798048	109798048	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
HDAC2	3066	hgsc.bcm.edu	37	6	114292035	114292035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	61	24	37	0	0
HS3ST5	222537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	114378976	114378976	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117665330	117665330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C6orf170	221322	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	121427246	121427246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
HEY2	23493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126080476	126080476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
CENPW	387103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126667370	126667370	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	72	39	33	0	0
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129204502	129204502	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ARHGAP18	93663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129950582	129950582	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	53	29	24	0	0
MOXD1	26002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132645213	132645213	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
IL20RA	53832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	137329836	137329836	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	5	4	0	0
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139237076	139237076	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	64	35	29	0	0
HECA	51696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139488123	139488123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	4	1	0	0
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143074762	143074762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	9	3	0	0
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	145160331	145160331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	26	13	13	0	0
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146214396	146214396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	7	1	0	0
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	146248371	146248371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
RAET1K	646024	broad.mit.edu;bcgsc.ca	37	6	150326243	150326243	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RAET1L	154064	broad.mit.edu;bcgsc.ca	37	6	150343331	150343331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	162	162	0	0	0
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151672050	151672050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	4	0	0	0
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151673402	151673402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
CNKSR3	154043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154732089	154732089	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	4	0	0	0
CNKSR3	154043	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154732101	154732101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
SYTL3	94120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159166688	159166688	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC22A3	6581	broad.mit.edu;bcgsc.ca	37	6	160819024	160819024	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LPA	4018	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	161006174	161006174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161510389	161510389	+	Silent	SNP	G	G	A	rs186715923		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	6	0	0	0
QKI	9444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	163984721	163984721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	79	45	34	0	0
C6orf118	168090	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	165703533	165703533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167417212	167417212	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167549924	167549924	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167550007	167550007	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	169622343	169622343	+	Silent	SNP	C	C	T	rs149118318		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	169648601	169648601	+	Missense_Mutation	SNP	C	C	T	rs144458205	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PSMB1	5689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	170846402	170846402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	359	213	145	0	1
PSMB1	5689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170862286	170862286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
GPR146	115330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	1097616	1097616	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
ELFN1	392617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	1784587	1784587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4285348	4285348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
SLC29A4	222962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5330852	5330852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
CCZ1B	221960	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6854405	6854405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
GLCCI1	113263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	8124630	8124630	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	3	1	0	0
ANKMY2	57037	ucsc.edu;bcgsc.ca	37	7	16649291	16649291	+	Silent	SNP	G	G	A	rs149044205	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	27	8	19	0	0
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18625005	18625005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
TWISTNB	221830	hgsc.bcm.edu;bcgsc.ca	37	7	19739713	19739713	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	20180768	20180768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SP4	6671	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21516828	21516828	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
DNAH11	8701	broad.mit.edu	37	7	21932249	21932249	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	113	112	1	0	0
DFNA5	1687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	24738664	24738664	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	95	92	3	0	0
ADCYAP1R1	117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31117638	31117638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36450230	36450230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	35	16	19	0	0
POU6F2	11281	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	39243895	39243895	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124123	45124123	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124945	45124945	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45124952	45124952	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NACAD	23148	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	45125542	45125542	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TBRG4	9238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45144212	45144212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	91	45	44	0	2
RAMP3	10268	hgsc.bcm.edu;bcgsc.ca	37	7	45222787	45222787	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
IGFBP3	3486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45954540	45954540	+	Missense_Mutation	SNP	C	C	T	rs17847676		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47983029	47983029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48311465	48311465	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CDC14C	168448	bcgsc.ca	37	7	48964272	48964272	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51096471	51096471	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF679	168417	broad.mit.edu	37	7	63726645	63726645	+	Missense_Mutation	SNP	T	T	C	rs1830035	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GUSB	2990	bcgsc.ca	37	7	65439319	65439319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	346	179	167	0	0
TYW1	55253	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66474576	66474576	+	Missense_Mutation	SNP	G	G	A	rs201171310		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
AUTS2	26053	broad.mit.edu	37	7	70255070	70255070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	70255628	70255628	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	18	11	7	0	0
TYW1B	441250	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	72159704	72159704	+	RNA	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FZD9	8326	ucsc.edu;bcgsc.ca	37	7	72850023	72850023	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	3	1	0	0
TBL2	26608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72985169	72985169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	40	23	17	0	0
WBSCR28	135886	ucsc.edu;bcgsc.ca	37	7	73279962	73279962	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GTF2IRD2B	389524	bcgsc.ca	37	7	74538966	74538966	+	Missense_Mutation	SNP	C	C	T	rs2539083	bycluster;byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	12	0	0	0
TMEM60	85025	hgsc.bcm.edu;broad.mit.edu	37	7	77423460	77423460	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86537770	86537770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CROT	54677	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86998758	86998758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	1	10	0	0
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88963113	88963113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92134188	92134188	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	7	4	0	0
ZNF394	84124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99091800	99091800	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FAM200A	221786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99144838	99144839	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TRIM4	89122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99507254	99507254	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	50	22	28	0	0
COPS6	10980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99688715	99688715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	248	231	17	0	0
PMS2P1	5379	ucsc.edu;bcgsc.ca	37	7	99933860	99933860	+	RNA	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	3	1	0	0
EPHB4	2050	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100417182	100417182	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ACHE	43	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100490017	100490017	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	5	0	0	0
NAPEPLD	222236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	102760123	102760123	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RELN	5649	bcgsc.ca	37	7	103230147	103230147	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ATXN7L1	222255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105255170	105255170	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	0	2	0	0
PIK3CG	5294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	106508801	106508801	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
COG5	10466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	106844034	106844034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	44	22	22	0	0
DUS4L	11062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107217974	107217974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	3	3	0	0
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107696427	107696427	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	108112846	108112846	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	62	30	32	0	0
LRRN3	54674	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	110764462	110764462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DOCK4	9732	ucsc.edu;bcgsc.ca	37	7	111428773	111428773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	3	0	0	0
MDFIC	29969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	114655908	114655908	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	3	7	0	0
ASZ1	136991	broad.mit.edu;bcgsc.ca	37	7	117062381	117062381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121608015	121608015	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GPR37	2861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	124404170	124404170	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	126086177	126086177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
IMPDH1	3614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128038611	128038611	+	Missense_Mutation	SNP	C	C	T	rs121912550		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	15	9	6	0	0
KCP	375616	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128517620	128517620	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	4	2	0	0
KCP	375616	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128518652	128518652	+	RNA	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	11	3	0	0
IRF5	3663	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128585921	128585921	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	133842788	133842788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135262571	135262571	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	5	0	0	0
TBXAS1	6916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139655387	139655387	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140246681	140246681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	4	0	0	0
AGK	55750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141333740	141333740	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	28	27	1	0	0
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141736707	141736707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MGAM	8972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141805626	141805626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	2	1	0	0
PRSS58	136541	broad.mit.edu	37	7	141955448	141955448	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PRSS1	5644	bcgsc.ca	37	7	142458511	142458511	+	Missense_Mutation	SNP	G	G	T	rs138464021	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142562373	142562373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
OR6V1	346517	broad.mit.edu;mdanderson.org	37	7	142750331	142750331	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	143088818	143088818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR2F2	135948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143632752	143632752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LOC728377	0	bcgsc.ca	37	7	143982518	143982518	+	RNA	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF467	168544	hgsc.bcm.edu	37	7	149462337	149462337	+	Silent	SNP	G	G	A	rs855667	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
SSPO	23145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149493469	149493469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	149508059	149508059	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRRC61	65999	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150034194	150034194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
REPIN1	29803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150069842	150069842	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	59	33	26	0	0
GIMAP8	155038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150174335	150174335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
SLC4A2	6522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150771569	150771569	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LOC100132707	0	bcgsc.ca	37	7	154739523	154739523	+	RNA	SNP	G	G	A	rs28596779	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
SHH	6469	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	155596348	155596348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
VIPR2	7434	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	158829448	158829448	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CSMD1	64478	hgsc.bcm.edu;bcgsc.ca	37	8	2909997	2909997	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FAM86B3P	286042	bcgsc.ca	37	8	8090126	8090126	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10465815	10465815	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC35G5	83650	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11189624	11189624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LONRF1	91694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	12580711	12580711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	2	2	0	0
LZTS1	11178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	20110358	20110358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	5	4	1	0	0
NEFM	4741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24775356	24775356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	1	1	0	0
DOCK5	80005	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	25191625	25191625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DOCK5	80005	ucsc.edu;bcgsc.ca	37	8	25261192	25261192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	28	0	28	0	0
CDCA2	157313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	25364499	25364499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	0	6	0	0
KIF13B	23303	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	28929234	28929234	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	32620757	32620757	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GOT1L1	137362	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	37792696	37792696	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
STAR	6770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38003893	38003893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4774	11	4753	4	6
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	41566384	41566384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
PRKDC	5591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48689404	48689404	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53044610	53044610	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RP1	6101	bcgsc.ca	37	8	55533938	55533938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
IMPAD1	54928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57905818	57905818	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	32	2	30	0	0
SGK3	23678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67755735	67755735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	0	7	0	0
PRDM14	63978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	70981595	70981595	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	71057034	71057034	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	1	8	0	0
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72977700	72977700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73848647	73848647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87443898	87443898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	18	1	17	0	0
DCAF4L2	138009	broad.mit.edu;bcgsc.ca	37	8	88885852	88885852	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OSGIN2	734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	90937358	90937358	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	2	7	0	0
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	93023263	93023263	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	93029539	93029539	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101299882	101299882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	1	8	0	0
PKHD1L1	93035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110457219	110457219	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CSMD3	114788	ucsc.edu	37	8	113418864	113418864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	114110996	114110996	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIAA0196	9897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	126067843	126067843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133900673	133900673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
SLA	6503	broad.mit.edu;bcgsc.ca	37	8	134060153	134060153	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134146920	134146920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	135621018	135621018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141749130	141749130	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	61	7	54	0	0
MROH5	389690	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142517208	142517208	+	RNA	SNP	C	C	T	rs139067780	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIFC2	90990	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	145697998	145697998	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	0	6	0	0
FOXH1	8928	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145699949	145699949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF517	340385	broad.mit.edu;bcgsc.ca	37	8	146032798	146032798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RLN2	6019	hgsc.bcm.edu	37	9	5304561	5304561	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	7049096	7049096	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	7049109	7049109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13	13	0	0	0
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14776240	14776240	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	16436339	16436339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19520911	19520911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CDKN2A	1029	hgsc.bcm.edu	37	9	21971150	21971150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	36	18	18	0	0
TMEM215	401498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32784389	32784389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANKRD18B	441459	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	33572356	33572356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C9orf24	84688	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	34381072	34381072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
DNAJB5	25822	ucsc.edu;bcgsc.ca	37	9	34993362	34993362	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	22	14	8	0	0
C9orf131	138724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35043650	35043650	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C9orf131	138724	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35044520	35044520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35720206	35720206	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CREB3	10488	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35735312	35735312	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36170340	36170340	+	Missense_Mutation	SNP	G	G	A	rs150485511		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCIN	881	ucsc.edu;bcgsc.ca	37	9	36170696	36170696	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
FRMPD1	22844	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37744759	37744759	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37745283	37745283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CNTNAP3	79937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	39109179	39109179	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
PGM5P2	595135	broad.mit.edu;bcgsc.ca	37	9	69084865	69084865	+	RNA	SNP	T	T	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	9	3	6	0	0
PRKACG	5568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71628334	71628334	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TJP2	9414	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71831374	71831374	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
APBA1	320	hgsc.bcm.edu	37	9	72131953	72131953	+	Silent	SNP	C	C	T	rs149995729		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79325100	79325100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82267520	82267520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82267635	82267635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	18	9	9	0	0
FRMD3	257019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	85926825	85926825	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	4	0	0	0
KIF27	55582	bcgsc.ca	37	9	86504166	86504166	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	4	0	0	0
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88248284	88248284	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NAA35	60560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88576991	88576991	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	10	6	4	0	0
NFIL3	4783	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	94171973	94171973	+	Silent	SNP	C	C	T	rs141662610		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	75	42	33	0	0
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96051773	96051773	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C9orf129	445577	bcgsc.ca	37	9	96097703	96097703	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	122	121	1	0	0
FAM120A	23196	bcgsc.ca	37	9	96326794	96326794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	136	63	73	0	0
LOC100132077	0	broad.mit.edu	37	9	97108464	97108464	+	RNA	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	98244481	98244481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF367	195828	hgsc.bcm.edu;mdanderson.org	37	9	99180071	99180071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
OR13C8	138802	broad.mit.edu	37	9	107331903	107331903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC44A1	23446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	108126992	108126992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MIR548Q	100313841	bcgsc.ca	37	9	109734562	109734562	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FAM206A	54942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	111696815	111696815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	7	4	3	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113192665	113192665	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114148674	114148674	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	29	26	3	0	0
PTBP3	9991	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114986217	114986217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	40	18	22	0	0
RGS3	5998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116269609	116269609	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TNC	3371	ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117803271	117803271	+	Missense_Mutation	SNP	C	C	T	rs2274750	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	288	143	145	0	0
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	119488071	119488071	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	4	0	4	0	0
MEGF9	1955	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123367687	123367687	+	Silent	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	2	4	0	0
GSN	2934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124064309	124064309	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	157	153	4	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377151	125377151	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR1B1	347169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125391061	125391061	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZBTB6	10773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125673275	125673275	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	8	5	3	0	0
CRB2	286204	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	126132455	126132455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MAPKAP1	79109	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128322005	128322005	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	70	33	37	0	0
ZBTB34	403341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129642194	129642194	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131346591	131346591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	34	18	16	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PKN3	29941	broad.mit.edu;bcgsc.ca	37	9	131469666	131469666	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
PKN3	29941	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131480648	131480650	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PRDM12	59335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	133556768	133556768	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PRRC2B	84726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134366821	134366821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	2	4	0	0
GBGT1	26301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136037733	136037733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DBH	1621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136501745	136501745	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIAA1984	84960	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139700573	139700573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	0	1	0	0
SSNA1	8636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140084326	140084326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	160	94	66	0	0
C9orf173	441476	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140145761	140145761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
EHMT1	79813	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140671199	140671199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	35	15	20	0	0
CACNA1B	774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140850238	140850238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TUBBP5	643224	broad.mit.edu;bcgsc.ca	37	9	141070908	141070908	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RNR2	6053	broad.mit.edu;bcgsc.ca	37	MT	2690	2690	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	13888	13705	177	4	2
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11852	11852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	27846	7597	20222	10	17
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12895	12895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2215	599	1615	0	1
PPP2R3B	28227	broad.mit.edu;bcgsc.ca	37	X	299353	299353	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
FRMPD4	9758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12728521	12728521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DCAF8L2	347442	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	27765447	27765447	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CASK	8573	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41437770	41437770	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	3	0	3	0	0
SMC1A	8243	broad.mit.edu	37	X	53432788	53432788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	14	14	0	0	0
OTUD6A	139562	bcgsc.ca	37	X	69282461	69282461	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ITM2A	9452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	78616967	78616967	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZNF711	7552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84519342	84519342	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	2	2	0	0	0
CPXCR1	53336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	88008936	88008936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NRK	203447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	105132368	105132368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NRK	203447	broad.mit.edu	37	X	105153236	105153236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
COL4A6	1288	ucsc.edu;bcgsc.ca	37	X	107681217	107681217	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110406821	110406821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KLHL13	90293	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	117033021	117033021	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	12	0	12	0	0
ZBTB33	10009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	119387857	119387857	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
THOC2	57187	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122757038	122757038	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	27	1	26	0	0
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	122820490	122820490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	6	0	6	0	0
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123215366	123215366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DCAF12L2	340578	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	125298569	125298569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	130416500	130416500	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MAGEC3	139081	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	140926205	140926205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MTMR1	8776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	149931073	149931073	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	11	0	11	0	0
PRRG3	79057	ucsc.edu;bcgsc.ca	37	X	150869181	150869181	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MAGEA1	4100	broad.mit.edu	37	X	152482236	152482236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
ZFP92	139735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152685761	152685761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ABCD1	215	hgsc.bcm.edu;broad.mit.edu	37	X	152994692	152994692	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	1	1	0	0	0
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153577327	153577327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	234	32	202	0	0
FLNA	2316	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153599554	153599554	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	110	7	103	0	0
PLXNA3	55558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153689660	153689660	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	18	2	16	0	0
FAM3A	60343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153740192	153740192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MACF1	23499	hgsc.bcm.edu;bcgsc.ca	37	1	39751304	39751305	+	Frame_Shift_Ins	INS	-	-	GGTA	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LRRC42	115353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	54423901	54423902	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DPYD	1806	hgsc.bcm.edu;bcgsc.ca	37	1	98165042	98165043	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
AKNAD1	254268	hgsc.bcm.edu	37	1	109369885	109369886	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SYCP1	6847	hgsc.bcm.edu	37	1	115537600	115537601	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SNRPE	6635	bcgsc.ca	37	1	203832838	203832839	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KIN	22944	broad.mit.edu;bcgsc.ca	37	10	7817764	7817765	+	Splice_Site	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TRDMT1	1787	broad.mit.edu	37	10	17199765	17199766	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANKRD30BP3	338579	broad.mit.edu;bcgsc.ca	37	10	45672487	45672488	+	RNA	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C10orf40	283025	hgsc.bcm.edu;bcgsc.ca	37	10	61718432	61718433	+	RNA	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BTRC	8945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103310572	103310573	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	608624	608625	+	Frame_Shift_Ins	INS	-	-	GACCGCTCCAG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NRXN2	9379	hgsc.bcm.edu;bcgsc.ca	37	11	64421196	64421197	+	Splice_Site	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HNRNPA1P10	664709	bcgsc.ca	37	12	54674541	54674542	+	RNA	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DGKA	1606	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56347513	56347514	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANKRD52	283373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56638929	56638930	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PPP1R12A	4659	hgsc.bcm.edu;broad.mit.edu	37	12	80201041	80201042	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCER1	196477	broad.mit.edu	37	12	91348097	91348098	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
OR5AU1	390445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21623596	21623597	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
JPH4	84502	hgsc.bcm.edu	37	14	24040435	24040436	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
REREP3	646396	bcgsc.ca	37	15	22566961	22566962	+	RNA	INS	-	-	GA	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TUBGCP5	114791	hgsc.bcm.edu;bcgsc.ca	37	15	22855112	22855113	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
EIF2AK4	440275	hgsc.bcm.edu;bcgsc.ca	37	15	40326638	40326639	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
VPS18	57617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	41195414	41195415	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SERF2-C15ORF63	0	bcgsc.ca	37	15	44093895	44093896	+	RNA	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC24A1	9187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65917184	65917185	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
AKAP13	11214	hgsc.bcm.edu;bcgsc.ca	37	15	86287016	86287017	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MSLN	10232	hgsc.bcm.edu;bcgsc.ca	37	16	816959	816960	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
C16orf88	400506	hgsc.bcm.edu	37	16	19725705	19725706	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RRN3P2	653390	broad.mit.edu;bcgsc.ca	37	16	29098503	29098504	+	RNA	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175656	+	In_Frame_Ins	INS	-	-	GCTGCT	rs113614842	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CLPP	8192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6361605	6361606	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DHDH	27294	bcgsc.ca	37	19	49442849	49442850	+	Frame_Shift_Ins	INS	-	-	G	rs3830420		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SCAF1	58506	broad.mit.edu	37	19	50158041	50158042	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MAP4K3	8491	hgsc.bcm.edu;bcgsc.ca	37	2	39487811	39487812	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RBM43	375287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	152107742	152107743	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SCRN3	79634	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	175264719	175264720	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179434526	179434527	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	204032074	204032075	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PARD3B	117583	hgsc.bcm.edu;bcgsc.ca	37	2	206166297	206166298	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CCDC108	255101	hgsc.bcm.edu;bcgsc.ca	37	2	219895931	219895932	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
COPS8	10920	hgsc.bcm.edu;bcgsc.ca	37	2	238002796	238002797	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DLGAP4	22839	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	35128865	35128866	+	In_Frame_Ins	INS	-	-	CTA	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46917558	46917559	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BPIFC	254240	hgsc.bcm.edu	37	22	32831828	32831829	+	Frame_Shift_Ins	INS	-	-	G	rs199560755		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42099452	42099453	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	15756165	15756166	+	Splice_Site	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DUSP7	1849	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52088242	52088243	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
BAP1	8314	hgsc.bcm.edu;bcgsc.ca	37	3	52437564	52437565	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KALRN	8997	hgsc.bcm.edu;bcgsc.ca	37	3	124431854	124431855	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CLOCK	9575	hgsc.bcm.edu;broad.mit.edu	37	4	56336953	56336954	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
NNT	23530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	43619202	43619203	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PAM	5066	hgsc.bcm.edu;bcgsc.ca	37	5	102340902	102340903	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LARS	51520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	145524102	145524103	+	Splice_Site	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
HIST1H2BE	8344	hgsc.bcm.edu;bcgsc.ca	37	6	26184051	26184052	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RRP36	88745	bcgsc.ca	37	6	42995208	42995209	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GPR115	221393	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	47680311	47680312	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GSTA2	2939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	52615481	52615482	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	56481544	56481545	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	112441533	112441534	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RSPH10B	222967	hgsc.bcm.edu;broad.mit.edu	37	7	6006678	6006679	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
RSPH10B	222967	hgsc.bcm.edu	37	7	6797368	6797369	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
COBL	23242	hgsc.bcm.edu;bcgsc.ca	37	7	51287561	51287562	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
TPRN	286262	hgsc.bcm.edu	37	9	140087024	140087025	+	In_Frame_Ins	INS	-	-	TCC	rs77086130		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
GPR112	139378	hgsc.bcm.edu;bcgsc.ca	37	X	135430724	135430725	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
SLC6A9	6536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44466854	44466855	+	Missense_Mutation	DNP	GC	GC	TG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ZCCHC14	23174	hgsc.bcm.edu;ucsc.edu	37	16	87445172	87445173	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
MEX3C	51320	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48702805	48702806	+	Missense_Mutation	DNP	AC	AC	CA	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10394800	10394801	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
CARD8	22900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48734920	48734921	+	Missense_Mutation	DNP	TA	TA	AT	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
KRTAP10-2	386679	hgsc.bcm.edu;ucsc.edu	37	21	45970771	45970772	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	0	0	0	0	0
