Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MMEL1	79258	broad.mit.edu	37	1	2560819	2560821	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
HES3	390992	hgsc.bcm.edu	37	1	6305201	6305201	+	Missense_Mutation	SNP	A	A	C	rs188463518		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GPR157	80045	hgsc.bcm.edu	37	1	9188967	9188967	+	Silent	SNP	G	G	C	rs77649572	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SRM	6723	hgsc.bcm.edu	37	1	11119899	11119899	+	Silent	SNP	T	T	C	rs7545802		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TNFRSF1B	7133	broad.mit.edu	37	1	12262126	12262126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
IGSF21	84966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	18691917	18691917	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22055060	22055060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FUCA1	2517	bcgsc.ca	37	1	24180962	24180962	+	Missense_Mutation	SNP	T	T	C	rs13551	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FAM46B	115572	hgsc.bcm.edu	37	1	27339103	27339103	+	Missense_Mutation	SNP	G	G	T	rs4970471		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
UTP11L	51118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38482069	38482069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
HIVEP3	59269	hgsc.bcm.edu	37	1	41976389	41976389	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PTBP2	58155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97272469	97272469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TRIM33	51592	hgsc.bcm.edu	37	1	115053471	115053471	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120612006	120612006	+	Silent	SNP	G	G	A	rs77243975	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
LCE1E	353135	bcgsc.ca	37	1	152760075	152760075	+	Silent	SNP	A	A	G	rs201660535	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
LCE1E	353135	ucsc.edu	37	1	152760096	152760096	+	Silent	SNP	A	A	T	rs115864544	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
DENND4B	9909	hgsc.bcm.edu;bcgsc.ca	37	1	153907278	153907278	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CD1E	913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158324185	158324185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
OR6K6	128371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158725430	158725430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
IFI16	3428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159021731	159021731	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FCER1A	2205	bcgsc.ca	37	1	159277689	159277689	+	Missense_Mutation	SNP	C	C	A	rs41264475	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
COPA	1314	broad.mit.edu	37	1	160277011	160277011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201182038	201182038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220369717	220369717	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
IBA57	200205	broad.mit.edu	37	1	228362441	228362441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233372603	233372603	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
HEATR1	55127	bcgsc.ca	37	1	236758887	236758887	+	Missense_Mutation	SNP	T	T	C	rs2794751	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ACTN2	88	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236902810	236902810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
OR2G6	391211	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248685138	248685138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
AKR1CL1	340811	bcgsc.ca	37	10	5202076	5202076	+	RNA	SNP	G	G	A	rs148010840	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
DHTKD1	55526	bcgsc.ca	37	10	12143105	12143105	+	Missense_Mutation	SNP	C	C	G	rs2062988	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SVIL	6840	bcgsc.ca	37	10	29777558	29777558	+	Silent	SNP	G	G	A	rs61737742	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000193	47000193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZNF503	84858	hgsc.bcm.edu	37	10	77158945	77158945	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CYP2C19	1557	ucsc.edu	37	10	96541616	96541616	+	Silent	SNP	G	G	A	rs4244285	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TRUB1	142940	bcgsc.ca	37	10	116719543	116719543	+	Missense_Mutation	SNP	G	G	A	rs7099565	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GFRA1	2674	bcgsc.ca	37	10	117884950	117884950	+	Silent	SNP	G	G	A	rs2245020	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	608465	608465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1267194	1267194	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651157	1651157	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651159	1651169	+	Frame_Shift_Del	DEL	GCTGTGGCTCT	GCTGTGGCTCT	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
OR52R1	119695	bcgsc.ca	37	11	4825225	4825225	+	Missense_Mutation	SNP	A	A	G	rs7941731	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
NLRP14	338323	bcgsc.ca	37	11	7079038	7079038	+	Missense_Mutation	SNP	G	G	A	rs10839708	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
LOC440040	0	broad.mit.edu	37	11	49831862	49831862	+	RNA	SNP	G	G	A	rs10839383	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TRIM51HP	440041	ucsc.edu	37	11	55062786	55062786	+	RNA	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
OR5AR1	219493	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56431814	56431814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
KRTAP5-8	57830	broad.mit.edu	37	11	71249275	71249275	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118374844	118374844	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ATN1	1822	ucsc.edu	37	12	7045906	7045906	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ATN1	1822	hgsc.bcm.edu	37	12	7045924	7045924	+	Missense_Mutation	SNP	G	G	T	rs199988271	alternate_allele	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63131354	63131354	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ACSS3	79611	hgsc.bcm.edu	37	12	81472014	81472014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TMEM119	338773	hgsc.bcm.edu	37	12	108986112	108986112	+	Silent	SNP	G	G	C	rs10861953	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
IQCD	115811	broad.mit.edu	37	12	113633505	113633505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CCDC168	643677	bcgsc.ca	37	13	103392709	103392709	+	Missense_Mutation	SNP	A	A	T	rs79592880		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ECRP	0	bcgsc.ca	37	14	21388266	21388266	+	RNA	SNP	G	G	C	rs3748340	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ECRP	0	bcgsc.ca	37	14	21388302	21388302	+	RNA	SNP	G	G	A	rs55928290		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ACIN1	22985	bcgsc.ca	37	14	23549319	23549319	+	Missense_Mutation	SNP	A	A	G	rs1885097	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
IL25	64806	broad.mit.edu	37	14	23845057	23845058	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
C14orf159	80017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91647656	91647656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ATG2B	55102	bcgsc.ca	37	14	96795839	96795839	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
EXOC3L4	91828	hgsc.bcm.edu	37	14	103568729	103568729	+	Silent	SNP	A	A	G	rs10142200	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105414374	105414374	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TMEM121	80757	hgsc.bcm.edu	37	14	105996119	105996119	+	Silent	SNP	C	C	T	rs79647036	byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CHEK2P2	646096	bcgsc.ca	37	15	20488728	20488728	+	RNA	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
NBEAP1	606	broad.mit.edu	37	15	20876452	20876452	+	RNA	SNP	G	G	A	rs6422239	bycluster;byfrequency;by2hit2allele	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
LOC727924	0	bcgsc.ca	37	15	22298105	22298105	+	RNA	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
HERC2	8924	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28510816	28510816	+	Silent	SNP	G	G	A	rs139612007		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41853473	41853473	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ST20	400410	bcgsc.ca	37	15	80191343	80191343	+	Missense_Mutation	SNP	G	G	A	rs7257	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TSC2	7249	broad.mit.edu;bcgsc.ca	37	16	2136869	2136869	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
RRN3	54700	broad.mit.edu	37	16	15188060	15188060	+	Missense_Mutation	SNP	G	G	A	rs201504364		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
RRN3	54700	broad.mit.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19451450	19451450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19488768	19488768	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GGA2	23062	hgsc.bcm.edu	37	16	23521643	23521643	+	Silent	SNP	G	G	C	rs1071685	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
RRN3P2	653390	broad.mit.edu	37	16	29118702	29118704	+	RNA	DEL	AGC	AGC	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CDH5	1003	broad.mit.edu	37	16	66420931	66420931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
RILP	83547	hgsc.bcm.edu	37	17	1553003	1553003	+	Silent	SNP	G	G	T	rs9896488		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PLD2	5338	bcgsc.ca	37	17	4718776	4718776	+	Silent	SNP	G	G	A	rs1132448	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SLC35G6	643664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7385476	7385476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MYO15A	51168	hgsc.bcm.edu	37	17	18024266	18024266	+	Missense_Mutation	SNP	T	T	G	rs2955367	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MAPK7	5598	broad.mit.edu	37	17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GAS2L2	246176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	34073260	34073260	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254417	42254417	+	Missense_Mutation	SNP	A	A	G	rs7212854	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SDK2	54549	broad.mit.edu	37	17	71503636	71503636	+	Silent	SNP	T	T	C	rs9895895	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SLC38A10	124565	bcgsc.ca	37	17	79219452	79219452	+	Silent	SNP	G	G	C	rs59820101	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3079307	3079307	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GATA6	2627	hgsc.bcm.edu;broad.mit.edu	37	18	19780774	19780774	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PIAS2	9063	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44435530	44435530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MIDN	90007	hgsc.bcm.edu	37	19	1250397	1250397	+	Silent	SNP	C	C	T	rs3746107	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619348	1619348	+	Silent	SNP	G	G	A	rs1052696	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619350	1619350	+	Missense_Mutation	SNP	C	C	T	rs1052692	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FEM1A	55527	hgsc.bcm.edu	37	19	4792049	4792049	+	Silent	SNP	G	G	A	rs12608548		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
NRTN	4902	hgsc.bcm.edu	37	19	5828125	5828125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MUC16	94025	broad.mit.edu;bcgsc.ca	37	19	9056461	9056461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9090327	9090327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13409696	13409696	+	Missense_Mutation	SNP	C	C	G	rs16022	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
LGALS17A	0	broad.mit.edu	37	19	40174427	40174427	+	RNA	SNP	A	A	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
IGFL1	374918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46733364	46733364	+	Splice_Site	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PPFIA3	8541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49637077	49637077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SIGLEC12	89858	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52003536	52003536	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
LILRB4	11006	bcgsc.ca	37	19	55175009	55175009	+	Missense_Mutation	SNP	G	G	T	rs11540761	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
DNAAF3	352909	hgsc.bcm.edu	37	19	55672055	55672055	+	Missense_Mutation	SNP	A	A	G	rs890871	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SSC5D	284297	hgsc.bcm.edu	37	19	56029616	56029616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SSC5D	284297	broad.mit.edu	37	19	56030009	56030009	+	Missense_Mutation	SNP	C	C	T	rs925878	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZNF444	55311	hgsc.bcm.edu	37	19	56671447	56671447	+	Silent	SNP	C	C	T	rs79199638	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZNF470	388566	bcgsc.ca	37	19	57088558	57088558	+	Missense_Mutation	SNP	A	A	G	rs3752179	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZSCAN18	65982	hgsc.bcm.edu	37	19	58596077	58596077	+	Missense_Mutation	SNP	G	G	C	rs201438629		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CLIP4	79745	bcgsc.ca	37	2	29356567	29356567	+	Silent	SNP	G	G	C	rs17749904	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CAPN14	440854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31428282	31428282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CRIM1	51232	hgsc.bcm.edu	37	2	36583461	36583461	+	Missense_Mutation	SNP	G	G	T	rs3821169		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
HNRPLL	92906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	38800509	38800509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
LOC728819	0	bcgsc.ca	37	2	43903066	43903066	+	Silent	SNP	A	A	G	rs3828297	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TMEM247	388946	ucsc.edu	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
C2orf73	129852	bcgsc.ca	37	2	54562012	54562012	+	Missense_Mutation	SNP	C	C	A	rs55714450	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TLX2	3196	hgsc.bcm.edu	37	2	74743139	74743139	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SNRNP200	23020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96962720	96962720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168104662	168104662	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TMEM194B	100131211	hgsc.bcm.edu	37	2	191399378	191399378	+	Missense_Mutation	SNP	C	C	G	rs13412879		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MARS2	92935	broad.mit.edu	37	2	198570807	198570807	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201440158	201440158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SLC52A3	113278	bcgsc.ca	37	20	746098	746098	+	Silent	SNP	G	G	A	rs3746808	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SIRPB1	10326	bcgsc.ca	37	20	1552457	1552457	+	Silent	SNP	G	G	A	rs16995332	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GPCPD1	56261	bcgsc.ca	37	20	5556512	5556512	+	Missense_Mutation	SNP	G	G	A	rs2273373	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SSTR4	6754	bcgsc.ca	37	20	23016970	23016970	+	Missense_Mutation	SNP	T	T	G	rs3746726	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FAM182A	284800	bcgsc.ca	37	20	26061967	26061967	+	RNA	SNP	G	G	T	rs200610416	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628233	29628233	+	RNA	SNP	A	A	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SRSF6	6431	broad.mit.edu	37	20	42086696	42086696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
EEF1A2	1917	hgsc.bcm.edu	37	20	62119708	62119708	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SRMS	6725	bcgsc.ca	37	20	62173562	62173562	+	Silent	SNP	G	G	T	rs56130722	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
RTEL1	51750	broad.mit.edu	37	20	62321687	62321687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GNB1L	54584	broad.mit.edu	37	22	19794180	19794180	+	Splice_Site	SNP	A	A	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
RASL10A	10633	hgsc.bcm.edu	37	22	29711161	29711161	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SH3BP1	23616	hgsc.bcm.edu	37	22	38051355	38051355	+	Silent	SNP	G	G	A	rs762989		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GALR3	8484	hgsc.bcm.edu	37	22	38221072	38221072	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FANCD2	2177	bcgsc.ca	37	3	10108898	10108898	+	Silent	SNP	A	A	G	rs77246387	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FANCD2	2177	bcgsc.ca	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CRTAP	10491	hgsc.bcm.edu	37	3	33155738	33155738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FBXL2	25827	broad.mit.edu	37	3	33339167	33339167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TOPAZ1	375337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44283769	44283769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395674	49395679	+	In_Frame_Del	DEL	GCCGCC	GCCGCC	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
RASSF1	11186	hgsc.bcm.edu	37	3	50378176	50378176	+	Missense_Mutation	SNP	T	T	G	rs4688725	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CACNA1D	776	broad.mit.edu	37	3	53529193	53529195	+	Frame_Shift_Del	DEL	GAT	GAT	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62631437	62631437	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PTPLB	201562	hgsc.bcm.edu	37	3	123303824	123303824	+	Silent	SNP	A	A	G	rs112371142	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MYLK	4638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123385189	123385189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GP9	2815	broad.mit.edu	37	3	128780901	128780901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ATR	545	bcgsc.ca	37	3	142217537	142217537	+	Silent	SNP	A	A	G	rs2227932	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MCF2L2	23101	bcgsc.ca	37	3	183027542	183027542	+	Missense_Mutation	SNP	T	T	G	rs7639705	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193039524	193039524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1389148	1389148	+	Silent	SNP	T	T	C	rs79888804	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
LOC650293	0	bcgsc.ca	37	4	8951778	8951778	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
BST1	683	hgsc.bcm.edu	37	4	15704874	15704874	+	Missense_Mutation	SNP	G	G	C	rs2302468		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ENAM	10117	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71510524	71510524	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ANKRD17	26057	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74012588	74012588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CCSER1	401145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	91234151	91234151	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ADH5	128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	99996090	99996090	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
INTU	27152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128608947	128608947	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GRIA2	2891	hgsc.bcm.edu	37	4	158256822	158256822	+	Splice_Site	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
DDX60	55601	bcgsc.ca	37	4	169188780	169188780	+	Missense_Mutation	SNP	T	T	C	rs576619	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZSWIM6	57688	hgsc.bcm.edu	37	5	60628774	60628774	+	Silent	SNP	C	C	T	rs76811816		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ARHGEF28	64283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	73169041	73169041	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950781	79950781	+	Missense_Mutation	SNP	A	A	G	rs1650697	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FAM81B	153643	bcgsc.ca	37	5	94749723	94749723	+	Silent	SNP	G	G	A	rs7726891	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PDLIM4	8572	ucsc.edu	37	5	131607080	131607080	+	Silent	SNP	A	A	G	rs270619	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140223018	140223018	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PCDHB5	26167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140515063	140515063	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TCOF1	6949	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149758877	149758877	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
HK3	3101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176318107	176318107	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
LOC728554	0	broad.mit.edu	37	5	177303216	177303218	+	RNA	DEL	GTG	GTG	-	rs72347473	alternate_allele	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TRIM52	84851	hgsc.bcm.edu	37	5	180687431	180687431	+	Silent	SNP	T	T	C	rs78075294		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TRIM52	84851	hgsc.bcm.edu	37	5	180687440	180687440	+	Silent	SNP	T	T	C	rs80005177	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
HIST1H3G	8355	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26271439	26271439	+	Silent	SNP	C	C	G	rs41266825	byfrequency;alternate_allele	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27419101	27419101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
C6orf136	221545	hgsc.bcm.edu	37	6	30615260	30615260	+	Silent	SNP	C	C	T	rs3132594	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
DPCR1	135656	bcgsc.ca	37	6	30917365	30917365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
DPCR1	135656	bcgsc.ca	37	6	30917368	30917368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CYP21A2	1589	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32007391	32007391	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
NOTCH4	4855	hgsc.bcm.edu	37	6	32163664	32163664	+	Silent	SNP	C	C	T	rs8192581		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CNPY3	10695	broad.mit.edu	37	6	42897358	42897360	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TNFRSF21	27242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47200618	47200618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MUT	4594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49416590	49416590	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ICK	22858	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	52871155	52871155	+	Missense_Mutation	SNP	T	T	C	rs145842629	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70890358	70890358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	101246658	101246658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZC3H12D	340152	hgsc.bcm.edu	37	6	149772190	149772190	+	Missense_Mutation	SNP	G	G	A	rs112722576		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5427517	5427517	+	Silent	SNP	G	G	A	rs34693947	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5428642	5428642	+	Silent	SNP	G	G	A	rs144662045		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193464	6193464	+	Missense_Mutation	SNP	T	T	G	rs61732616	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PMS2CL	441194	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6777373	6777373	+	RNA	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SCIN	85477	broad.mit.edu	37	7	12610451	12610451	+	Silent	SNP	G	G	A	rs76096341	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
NACAD	23148	broad.mit.edu	37	7	45123697	45123697	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
NACAD	23148	hgsc.bcm.edu	37	7	45125695	45125695	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
AUTS2	26053	broad.mit.edu	37	7	70255577	70255579	+	In_Frame_Del	DEL	CCA	CCA	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
POR	5447	hgsc.bcm.edu	37	7	75615364	75615364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SMO	6608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128851520	128851520	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SLC4A2	6522	bcgsc.ca	37	7	150761314	150761314	+	Missense_Mutation	SNP	G	G	A	rs2303929	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151478345	151478345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FAM167A	83648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11282142	11282142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
LOXL2	4017	bcgsc.ca	37	8	23186007	23186007	+	Silent	SNP	T	T	C	rs1051146	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
GPR124	25960	hgsc.bcm.edu	37	8	37699516	37699516	+	Silent	SNP	C	C	T	rs7010546	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ADRB3	155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	37823625	37823625	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CNGB3	54714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87683246	87683246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
DMRT1	1761	hgsc.bcm.edu	37	9	841971	841971	+	Missense_Mutation	SNP	T	T	A	rs3739583	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
C9orf41	138199	hgsc.bcm.edu;broad.mit.edu	37	9	77631307	77631307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79438595	79438595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PAPPA	5069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118974097	118974097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
C9orf96	169436	bcgsc.ca	37	9	136268084	136268084	+	Missense_Mutation	SNP	A	A	G	rs3124747	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
EHMT1	79813	hgsc.bcm.edu	37	9	140728974	140728974	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
RNR1	6052	bcgsc.ca	37	MT	750	750	+	RNA	SNP	A	A	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
RNR2	6053	broad.mit.edu;bcgsc.ca	37	MT	2894	2894	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
tRNA-Leu1	0	broad.mit.edu;bcgsc.ca	37	MT	3281	3281	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ND4	0	broad.mit.edu	37	MT	11467	11467	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15758	15758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
PNPLA4	8228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	7890140	7890140	+	Splice_Site	SNP	C	C	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CA5BP1	340591	bcgsc.ca	37	X	15711293	15711293	+	RNA	DEL	T	T	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CA5BP1	340591	bcgsc.ca	37	X	15711316	15711316	+	RNA	DEL	A	A	-	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SYTL4	94121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99955985	99955985	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
MAGEA11	4110	bcgsc.ca	37	X	148798223	148798223	+	Silent	SNP	T	T	C	rs2233050	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
IRAK1	3654	bcgsc.ca	37	X	153284192	153284192	+	Missense_Mutation	SNP	A	A	G	rs1059702	byfrequency	TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZNF503	84858	hgsc.bcm.edu	37	10	77158939	77158940	+	Nonsense_Mutation	INS	-	-	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7579470	7579471	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
SSUH2	51066	broad.mit.edu	37	3	8675505	8675506	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131007363	131007364	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
FZD1	8321	hgsc.bcm.edu	37	7	90894459	90894460	+	In_Frame_Ins	INS	-	-	CCG	rs139480179		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
AGPAT2	10555	broad.mit.edu;bcgsc.ca	37	9	139581758	139581759	+	In_Frame_Ins	INS	-	-	CAG	rs201504151		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CA5BP1	340591	bcgsc.ca	37	X	15711299	15711300	+	RNA	INS	-	-	TT	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CA5BP1	340591	bcgsc.ca	37	X	15711308	15711309	+	RNA	INS	-	-	T	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
CA5BP1	340591	bcgsc.ca	37	X	15711312	15711313	+	RNA	INS	-	-	G	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
C16orf3	750	ucsc.edu	37	16	90095596	90095597	+	Missense_Mutation	DNP	AT	AT	GC	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-PK-A5HC-01A-11D-A30A-10	TCGA-PK-A5HC-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9251b712-6bae-401a-973e-ca78f2c837e8	1dc71f1c-5f27-469f-92f0-00b5a05fe092	0	0	0	0	0
