Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TTLL10	254173	bcgsc.ca	37	1	1120431	1120431	+	Missense_Mutation	SNP	G	G	A	rs1320571	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1273448	1273448	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	52	0	52	0	0
ATAD3A	55210	hgsc.bcm.edu	37	1	1447693	1447693	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	1	0	1	0	0
CDK11A	728642	ucsc.edu;bcgsc.ca	37	1	1638897	1638897	+	Missense_Mutation	SNP	A	A	G	rs201956539		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	40	0	40	0	0
AGMAT	79814	hgsc.bcm.edu	37	1	15911349	15911349	+	Silent	SNP	G	G	A	rs3737705	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
CROCCP2	84809	bcgsc.ca	37	1	16950742	16950742	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	5	4	1	0	0
CROCCP2	84809	broad.mit.edu	37	1	16956460	16956460	+	RNA	SNP	A	A	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	2	1	1	0	0
IL22RA1	58985	bcgsc.ca	37	1	24465113	24465113	+	Silent	SNP	C	C	T	rs10903022	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
KCNA3	3738	broad.mit.edu	37	1	111216299	111216299	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PDE4DIP	9659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	145075687	145075687	+	Missense_Mutation	SNP	C	C	G	rs78401481	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
NES	10763	bcgsc.ca	37	1	156640503	156640503	+	Silent	SNP	C	C	T	rs3828043	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	3	3	0	0	0
RNASEL	6041	bcgsc.ca	37	1	182554557	182554557	+	Missense_Mutation	SNP	C	C	T	rs486907	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	2	2	0	0	0
CAPN2	824	bcgsc.ca	37	1	223933079	223933079	+	Silent	SNP	C	C	T	rs17598	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	40	40	0	0	0
PSEN2	5664	bcgsc.ca	37	1	227077809	227077809	+	Silent	SNP	C	C	T	rs75733498	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	22	22	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
FMN2	56776	mdanderson.org	37	1	240371223	240371223	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
ANKRD30A	91074	ucsc.edu	37	10	37438605	37438605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
FAM21C	253725	bcgsc.ca	37	10	46224381	46224381	+	Silent	SNP	C	C	T	rs17157971	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	1	1	0	0	0
SPOCK2	9806	hgsc.bcm.edu	37	10	73848075	73848075	+	Silent	SNP	C	C	T	rs2306324		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	3	3	0	0	0
PGAM1	5223	broad.mit.edu	37	10	99186071	99186071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	285	283	1	0	1
RBM20	282996	hgsc.bcm.edu	37	10	112404302	112404302	+	Silent	SNP	G	G	A	rs35141404	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
RBM20	282996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112540915	112540915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
DUSP8	1850	hgsc.bcm.edu	37	11	1578741	1578741	+	Silent	SNP	C	C	T	rs182736278		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	1	0	1	0	0
PTPRJ	5795	broad.mit.edu	37	11	48149412	48149412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	1	1	0	0	0
TPCN2	219931	bcgsc.ca	37	11	68837957	68837957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	100095508	100095508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	1589	607	982	0	0
TESPA1	9840	bcgsc.ca	37	12	55368245	55368245	+	Silent	SNP	G	G	A	rs4758993	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81777846	81777846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
ABCB9	23457	broad.mit.edu	37	12	123414623	123414623	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	15	13	2	0	0
ATP6V0A2	23545	broad.mit.edu	37	12	124239085	124239085	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
SPERT	220082	hgsc.bcm.edu	37	13	46288017	46288017	+	Nonsense_Mutation	SNP	C	C	A	rs79707842		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	9	9	0	0	0
RTL1	388015	broad.mit.edu	37	14	101349017	101349017	+	Silent	SNP	A	A	G	rs6575805	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
WHAMMP1	100288615	broad.mit.edu	37	15	32820880	32820880	+	RNA	SNP	C	C	G	rs62017499		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
SPATA5L1	79029	hgsc.bcm.edu	37	15	45695445	45695445	+	Missense_Mutation	SNP	C	C	G	rs143453038		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	1	0	1	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051801	79051801	+	Missense_Mutation	SNP	C	C	A	rs201472223		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	7	7	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
RRN3P2	653390	broad.mit.edu	37	16	29110458	29110458	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	36	0	36	0	0
ZFP90	146198	broad.mit.edu	37	16	68597636	68597636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	10	10	0	0	0
MTSS1L	92154	broad.mit.edu	37	16	70698201	70698201	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	8	8	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
ADPRM	56985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10608472	10608472	+	Missense_Mutation	SNP	G	G	A	rs74947284		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	6	1	5	0	0
KRTAP4-6	81871	ucsc.edu	37	17	39296422	39296422	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305775	39305775	+	Missense_Mutation	SNP	T	T	C	rs141265645		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
LRRC37A4P	55073	bcgsc.ca	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs2667851		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
LRRC37A4P	55073	bcgsc.ca	37	17	43587576	43587576	+	RNA	SNP	A	A	G	rs2684618		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
HELZ	9931	bcgsc.ca	37	17	65190106	65190106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PRKAR1A	5573	hgsc.bcm.edu;bcgsc.ca	37	17	66526554	66526554	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	932572	932572	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	1	1	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	4	2	2	0	0
PCSK4	54760	hgsc.bcm.edu	37	19	1482150	1482150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	4	0	4	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	1	0	1	0	0
PLIN5	440503	hgsc.bcm.edu	37	19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	rs1062223	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	4	2	2	0	0
HNRNPM	4670	hgsc.bcm.edu	37	19	8551112	8551112	+	Silent	SNP	G	G	T	rs12977861	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	75	37	38	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
LRP3	4037	hgsc.bcm.edu	37	19	33698018	33698018	+	Missense_Mutation	SNP	C	C	T	rs11539586		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	42	12	29	0	1
BLOC1S3	388552	hgsc.bcm.edu	37	19	45682698	45682698	+	Silent	SNP	C	C	A	rs182286598		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	22	9	13	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	3	1	2	0	0
TP53I3	9540	broad.mit.edu	37	2	24307079	24307079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	5	5	0	0	0
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26537397	26537397	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
TMEM247	388946	ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
IMMT	10989	ucsc.edu;bcgsc.ca	37	2	86400824	86400824	+	Missense_Mutation	SNP	G	G	A	rs1050301	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	51	51	0	0	0
LIMS1	3987	ucsc.edu	37	2	109293130	109293130	+	Silent	SNP	A	A	G	rs2438733	bycluster;byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	4	0	4	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	133014721	133014721	+	RNA	SNP	T	T	C	rs72869465	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
C2orf54	79919	hgsc.bcm.edu	37	2	241827798	241827798	+	Missense_Mutation	SNP	T	T	C	rs11899555	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
C2orf54	79919	hgsc.bcm.edu	37	2	241827805	241827805	+	Silent	SNP	C	C	A	rs75895045		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
FAM182B	728882	broad.mit.edu	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	5	5	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061817	26061817	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PROCR	10544	broad.mit.edu	37	20	33762727	33762727	+	Missense_Mutation	SNP	G	G	T	rs200377875		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	5	5	0	0	0
IFNAR2	3455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	34634996	34634996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	2	1	1	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
LINC00163	727699	broad.mit.edu	37	21	46412663	46412663	+	RNA	DEL	G	G	-	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	21088807	21088807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	10	10	0	0	0
TAB1	10454	broad.mit.edu	37	22	39826114	39826114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	8	8	0	0	0
C22orf26	55267	hgsc.bcm.edu	37	22	46449891	46449891	+	Missense_Mutation	SNP	G	G	A	rs12159707		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PLCD1	5333	broad.mit.edu	37	3	38050645	38050645	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
SETD2	29072	broad.mit.edu	37	3	47163592	47163592	+	Nonsense_Mutation	SNP	G	G	C	rs201639149		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	2	2	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395674	49395679	+	In_Frame_Del	DEL	GCCGCC	GCCGCC	-	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
TLR9	54106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52255624	52255624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	1	1	0	0	0
GPR171	29909	broad.mit.edu	37	3	150916947	150916947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
ETV5	2119	broad.mit.edu	37	3	185797720	185797720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	7	7	0	0	0
LEPREL1	55214	bcgsc.ca	37	3	189713205	189713205	+	Silent	SNP	T	T	C	rs9821880	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	21	21	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537078	88537078	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537249	88537249	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
FRG1	2483	bcgsc.ca	37	4	190878626	190878626	+	Missense_Mutation	SNP	G	G	A	rs71229055		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	72	72	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	13870993	13870993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
SNX18	112574	hgsc.bcm.edu	37	5	53814052	53814052	+	Silent	SNP	T	T	C	rs2548615		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PPWD1	23398	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	64878975	64878975	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	16	9	7	0	0
CMYA5	202333	broad.mit.edu	37	5	79041149	79041151	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PCDHA12	56137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140255099	140255099	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PCDHB13	56123	hgsc.bcm.edu	37	5	140595625	140595625	+	Missense_Mutation	SNP	G	G	A	rs76927815		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	33	32	1	0	0
HK3	3101	broad.mit.edu	37	5	176315851	176315851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
HLA-H	3136	bcgsc.ca	37	6	29857504	29857504	+	RNA	SNP	G	G	A	rs28628412	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51920393	51920393	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	1	0	1	0	0
GBX1	2636	hgsc.bcm.edu	37	7	150864240	150864240	+	Silent	SNP	G	G	C	rs13241978	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
SGK223	0	broad.mit.edu	37	8	8239069	8239069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
KCNB2	9312	broad.mit.edu	37	8	73850257	73850257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
E2F5	1875	hgsc.bcm.edu	37	8	86089787	86089787	+	Silent	SNP	C	C	G	rs12926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
ADCY8	114	hgsc.bcm.edu	37	8	132052342	132052342	+	Missense_Mutation	SNP	C	C	T	rs2228949	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
DAB2IP	153090	hgsc.bcm.edu	37	9	124535156	124535156	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
GPR144	347088	broad.mit.edu	37	9	127230891	127230891	+	Missense_Mutation	SNP	G	G	A	rs10760365	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
GPR144	347088	broad.mit.edu	37	9	127231774	127231774	+	Missense_Mutation	SNP	C	C	G	rs1570580	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
COL5A1	1289	broad.mit.edu	37	9	137727048	137727048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
tRNA-Glu	0	bcgsc.ca	37	MT	14715	14715	+	RNA	SNP	A	A	C	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	3074	1919	1151	2	2
GPR174	84636	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78426661	78426661	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
MAGEC1	9947	bcgsc.ca	37	X	140994407	140994407	+	Missense_Mutation	SNP	C	C	G	rs62611965	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
MAGEC1	9947	bcgsc.ca	37	X	140994419	140994419	+	Missense_Mutation	SNP	T	T	C	rs138268726	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
CALHM3	119395	hgsc.bcm.edu	37	10	105233174	105233175	+	In_Frame_Ins	INS	-	-	GGGGGCTCAGGCACTGCG	rs143800079		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
LRRC37BP1	147172	broad.mit.edu	37	17	28960996	28960997	+	RNA	INS	-	-	TC	rs199547031		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
FLJ33360	0	broad.mit.edu	37	5	6337065	6337066	+	RNA	INS	-	-	AC	rs147195078	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305773	39305774	+	Missense_Mutation	DNP	TC	TC	GG	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
VARS	7407	hgsc.bcm.edu	37	6	31762843	31762844	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	0	0	0	0	0
