Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TTLL10	254173	hgsc.bcm.edu	37	1	1132966	1132966	+	Silent	SNP	C	C	A	rs2274790	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
AJAP1	55966	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	4772335	4772335	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	2	0	2	0	0
FHAD1	114827	bcgsc.ca	37	1	15642956	15642956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	1	0	0	0
AGMAT	79814	hgsc.bcm.edu	37	1	15911349	15911349	+	Silent	SNP	G	G	A	rs3737705	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	4	0	4	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
SH3D21	79729	broad.mit.edu	37	1	36773405	36773405	+	Silent	SNP	T	T	G	rs35343437	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	4	2	2	0	0
OR6N2	81442	bcgsc.ca	37	1	158746678	158746678	+	Missense_Mutation	SNP	T	T	C	rs41273541	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176525604	176525604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	0	1	0	0
ABL2	27	bcgsc.ca	37	1	179077613	179077613	+	Missense_Mutation	SNP	T	T	C	rs17277288	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
TPR	7175	broad.mit.edu;bcgsc.ca	37	1	186303520	186303520	+	Missense_Mutation	SNP	T	T	C	rs35766045	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	29	29	0	0	0
IDI1	3422	hgsc.bcm.edu	37	10	1094906	1094906	+	Missense_Mutation	SNP	C	C	T	rs7091756	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	7	1	6	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	rs72780221	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
LOC650368	0	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	0	1	0	0
TMEM132A	54972	hgsc.bcm.edu	37	11	60701987	60701987	+	Silent	SNP	G	G	A	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	125	0	125	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ITPR2	3709	broad.mit.edu	37	12	26628350	26628350	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
METTL7B	196410	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56075586	56075586	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
NUDT4	11163	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	93792979	93792979	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	76	63	13	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103382007	103382007	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	6	2	4	0	0
ACIN1	22985	ucsc.edu	37	14	23548787	23548787	+	Missense_Mutation	SNP	C	C	T	rs61741619	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	14	9	5	0	0
ASB2	51676	broad.mit.edu	37	14	94405527	94405527	+	Missense_Mutation	SNP	T	T	G	rs199833352		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	1	0	0	0
HERC2P2	400322	broad.mit.edu	37	15	23283078	23283078	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	58	48	10	0	0
NDUFAF1	51103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41680715	41680715	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	1	0	0	0
C15orf48	84419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45724279	45724279	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	60	60	0	0	0
NAGPA	51172	bcgsc.ca	37	16	5077284	5077284	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
CIITA	4261	bcgsc.ca	37	16	10989219	10989219	+	Missense_Mutation	SNP	C	C	G	rs2229317	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890639	32890639	+	RNA	SNP	T	T	C	rs79284655	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	174	0	174	0	0
ZNF319	57567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58031921	58031921	+	Silent	SNP	G	G	A	rs144999714		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	12	10	2	0	0
HYDIN	54768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70891677	70891677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	2	2	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
PIEZO1	9780	broad.mit.edu	37	16	88791458	88791458	+	Missense_Mutation	SNP	G	G	A	rs11645197	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	24	24	0	0	0
WDR81	124997	ucsc.edu;bcgsc.ca	37	17	1640812	1640812	+	Missense_Mutation	SNP	G	G	A	rs200284291		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	35	16	19	0	0
ZZEF1	23140	hgsc.bcm.edu	37	17	4046101	4046101	+	Missense_Mutation	SNP	A	A	G	rs1454121		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
GUCY2D	3000	hgsc.bcm.edu	37	17	7906426	7906426	+	Missense_Mutation	SNP	T	T	C	rs9905402	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
RNF135	84282	hgsc.bcm.edu	37	17	29298413	29298413	+	Missense_Mutation	SNP	T	T	C	rs7211440	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	10	0	10	0	0
ARHGAP23	57636	hgsc.bcm.edu	37	17	36666551	36666551	+	Silent	SNP	T	T	C	rs62074752		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	6	0	6	0	0
KRT26	353288	bcgsc.ca	37	17	38928019	38928019	+	Missense_Mutation	SNP	T	T	C	rs73985745	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
GRIN2C	2905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72846371	72846371	+	Missense_Mutation	SNP	C	C	T	rs140384270	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	8	8	0	0	0
UBALD2	283991	bcgsc.ca	37	17	74261677	74261677	+	Silent	SNP	T	T	C	rs2585751	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	46	8	38	0	0
NDC80	10403	broad.mit.edu	37	18	2616568	2616568	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	3	3	0	0	0
KIAA1328	57536	bcgsc.ca	37	18	34740290	34740290	+	Missense_Mutation	SNP	A	A	C	rs140424487	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	4	4	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
PPAP2C	8612	bcgsc.ca	37	19	282753	282753	+	Missense_Mutation	SNP	G	G	A	rs1138439	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929741	929741	+	Silent	SNP	C	C	T	rs34967265	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	17	0	17	0	0
JSRP1	126306	hgsc.bcm.edu	37	19	2253732	2253732	+	Missense_Mutation	SNP	G	G	A	rs74521370		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	4	0	4	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	45	28	17	0	0
RANBP3	8498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5951537	5951537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	18	16	2	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	0	1	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	rs890853	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
NWD1	284434	broad.mit.edu;bcgsc.ca	37	19	16860082	16860082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
LRP3	4037	hgsc.bcm.edu	37	19	33696354	33696354	+	Silent	SNP	C	C	T	rs3745977	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	141	62	79	0	0
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34929551	34929551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
HPN	3249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35551399	35551399	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37677163	37677163	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	6	4	2	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ZNF575	284346	broad.mit.edu	37	19	44039527	44039527	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127378	47127378	+	Silent	SNP	C	C	A	rs76887099		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	4	3	1	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258699	48258699	+	Missense_Mutation	SNP	C	C	T	rs11538665		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	272	118	152	0	2
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	rs1804994	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	95	0	95	0	0
PRR12	57479	hgsc.bcm.edu	37	19	50104948	50104948	+	Missense_Mutation	SNP	C	C	A	rs142810131		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	20	12	8	0	0
SCAF1	58506	hgsc.bcm.edu	37	19	50154904	50154904	+	Missense_Mutation	SNP	A	A	C	rs7251334		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	14	0	14	0	0
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50156834	50156834	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	164	129	35	0	0
MYH14	79784	hgsc.bcm.edu	37	19	50713713	50713713	+	Missense_Mutation	SNP	C	C	A	rs590722		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
VN1R2	317701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53761677	53761677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	5	5	0	0	0
FIZ1	84922	hgsc.bcm.edu	37	19	56104152	56104152	+	Silent	SNP	G	G	A	rs114339119		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	18	7	10	1	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599405	56599405	+	Missense_Mutation	SNP	C	C	G	rs4077285		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	3	0	3	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ZNF444	55311	hgsc.bcm.edu	37	19	56671359	56671359	+	Missense_Mutation	SNP	C	C	G	rs145075834		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	8	4	4	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391826	3391826	+	Silent	SNP	C	C	T	rs11127423		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	13	0	13	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21224859	21224859	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ITSN2	50618	hgsc.bcm.edu;bcgsc.ca	37	2	24522816	24522816	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	3	3	0	0	0
CLIP4	79745	bcgsc.ca	37	2	29356669	29356669	+	Silent	SNP	A	A	G	rs3100232	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
FAM98A	25940	bcgsc.ca	37	2	33810648	33810648	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	15	15	0	0	0
DYNC2LI1	51626	broad.mit.edu	37	2	44021826	44021826	+	Missense_Mutation	SNP	T	T	A	rs9309107	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	9	9	0	0	0
FLJ30838	0	bcgsc.ca	37	2	58905387	58905387	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	21	21	0	0	0
DNAH6	1768	broad.mit.edu	37	2	84954849	84954849	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ANKRD20A8P	729171	ucsc.edu	37	2	95519360	95519360	+	RNA	SNP	G	G	T	rs77762483		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
LONRF2	164832	hgsc.bcm.edu	37	2	100938481	100938481	+	Missense_Mutation	SNP	C	C	G	rs74177696		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	2	0	2	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	0	1	0	0
INHBB	3625	hgsc.bcm.edu	37	2	121104111	121104111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	11	11	0	0	0
NRP2	8828	hgsc.bcm.edu	37	2	206641241	206641245	+	Frame_Shift_Del	DEL	GCACT	GCACT	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	GCACT	GCACT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215914356	215914356	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
SP110	3431	bcgsc.ca	37	2	231042276	231042276	+	Missense_Mutation	SNP	A	A	G	rs1135791	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	10	10	0	0	0
RBM44	375316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238729832	238729832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
LOC728323	0	bcgsc.ca	37	2	243061183	243061183	+	RNA	SNP	C	C	T	rs2722532		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	32	2	30	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	CGG	-	rs5839848	alternate_allele	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	CGG	CGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
LZTS3	0	hgsc.bcm.edu	37	20	3147706	3147706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	6	4	2	0	0
FAM182B	728882	broad.mit.edu	37	20	25755510	25755510	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	2	2	0	0	0
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31372582	31372582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
STK4	6789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43623747	43623747	+	Missense_Mutation	SNP	G	G	A	rs202070040		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	3	0	3	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	5	0	5	0	0
TMPRSS2	7113	hgsc.bcm.edu	37	21	42879909	42879909	+	Missense_Mutation	SNP	C	C	A	rs75603675	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
KRTAP10-4	386672	ucsc.edu	37	21	45993851	45993851	+	Silent	SNP	C	C	T	rs543299		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
IL17RA	23765	hgsc.bcm.edu	37	22	17590180	17590180	+	Missense_Mutation	SNP	G	G	A	rs41323645		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	5	0	5	0	0
GUSBP11	91316	broad.mit.edu	37	22	23980968	23980968	+	RNA	SNP	T	T	A	rs13056126	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	7	7	0	0	0
ZNF70	7621	bcgsc.ca	37	22	24086107	24086107	+	Silent	SNP	A	A	G	rs5759985	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	1	0	0	0
GSTT2	2953	bcgsc.ca	37	22	24323227	24323227	+	Splice_Site	SNP	G	G	A	rs76498342	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
C22orf28	51493	bcgsc.ca	37	22	32795641	32795641	+	Silent	SNP	C	C	T	rs5749426	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	39	39	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
CHADL	150356	broad.mit.edu	37	22	41635555	41635555	+	Silent	SNP	C	C	T	rs8135399	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ACVR2B	93	bcgsc.ca	37	3	38519424	38519424	+	Silent	SNP	A	A	G	rs2070489	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	1	0	0	0
FAM198A	729085	broad.mit.edu	37	3	43097710	43097710	+	Silent	SNP	A	A	G	rs664628	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
DOCK3	1795	broad.mit.edu	37	3	51370644	51370644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	2	2	0	0	0
CCDC54	84692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107096799	107096799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
HEG1	57493	hgsc.bcm.edu;bcgsc.ca	37	3	124696757	124696757	+	Missense_Mutation	SNP	G	G	T	rs186214189	by1000genomes;alternate_allele	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	2	2	0	0	0
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167051700	167051700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ATP13A5	344905	broad.mit.edu	37	3	193051683	193051683	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195595405	195595405	+	Silent	SNP	G	G	A	rs1056726	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	15	8	7	0	0
CRMP1	1400	hgsc.bcm.edu	37	4	5894586	5894586	+	Silent	SNP	G	G	A	rs143304363		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	13	0	13	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492546	48492546	+	Silent	SNP	C	C	A	rs73144650	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
COQ2	27235	hgsc.bcm.edu	37	4	84205872	84205872	+	Missense_Mutation	SNP	C	C	A	rs6818847	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537051	88537051	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144135926	144135926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	37	23	14	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633071	6633071	+	Missense_Mutation	SNP	G	G	A	rs181415619		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	11	7	4	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	2	0	2	0	0
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	23509687	23509687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35667294	35667294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	2	2	0	0	0
SNX18	112574	hgsc.bcm.edu	37	5	53814052	53814052	+	Silent	SNP	T	T	C	rs2548615		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ENC1	8507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	73931914	73931914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	17	9	8	0	0
NBPF22P	285622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	85583578	85583578	+	RNA	SNP	C	C	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
PCDHB2	56133	bcgsc.ca	37	5	140476000	140476000	+	Silent	SNP	G	G	T	rs141231979	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	47	3	44	0	0
ABLIM3	22885	broad.mit.edu	37	5	148637920	148637920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
TAP2	6891	bcgsc.ca	37	6	32796751	32796751	+	Missense_Mutation	SNP	T	T	C	rs241447	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	16	16	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
NFKBIE	4794	hgsc.bcm.edu	37	6	44233175	44233175	+	Missense_Mutation	SNP	C	C	T	rs2233431	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
PGK2	5232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49753750	49753750	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
STX7	8417	broad.mit.edu	37	6	132793498	132793498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	18	18	0	0	0
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2946306	2946306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	1	0	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	18	0	18	0	0
ZAN	7455	bcgsc.ca	37	7	100374087	100374087	+	Missense_Mutation	SNP	A	A	G	rs314300	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117149172	117149172	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
MCPH1	79648	broad.mit.edu	37	8	6302794	6302794	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	10	8	2	0	0
GPR124	25960	hgsc.bcm.edu;bcgsc.ca	37	8	37686420	37686420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ODF1	4956	ucsc.edu	37	8	103573037	103573037	+	Silent	SNP	G	G	C	rs62523273	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	1	0	0	0
ODF1	4956	ucsc.edu	37	8	103573042	103573042	+	Missense_Mutation	SNP	G	G	A	rs11992195	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	1	0	0	0
DPYS	1807	hgsc.bcm.edu	37	8	105479146	105479146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ENPP2	5168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120594822	120594822	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	365	365	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	8	4	4	0	0
FAM83H	286077	hgsc.bcm.edu	37	8	144810138	144810138	+	Missense_Mutation	SNP	G	G	A	rs1137806		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	16	7	9	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	18	9	9	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	1	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	25	16	9	0	0
SCRT1	83482	hgsc.bcm.edu	37	8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	rs7013127		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	7	0	7	0	0
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5055714	5055714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	1	1	0	0	0
JAK2	3717	broad.mit.edu	37	9	5089735	5089735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	3	3	0	0	0
ANKRD18B	441459	bcgsc.ca	37	9	33524684	33524684	+	Missense_Mutation	SNP	G	G	A	rs3843933	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ODF2	4957	broad.mit.edu	37	9	131245096	131245096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
CCBL1	883	broad.mit.edu	37	9	131597770	131597770	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
LRRC26	389816	hgsc.bcm.edu	37	9	140064315	140064315	+	Missense_Mutation	SNP	C	C	A	rs7019671		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
PPP2R3B	28227	bcgsc.ca	37	X	299360	299360	+	Missense_Mutation	SNP	G	G	A	rs1133520	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
FRMPD4	9758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12736016	12736016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
SCML2	10389	broad.mit.edu;bcgsc.ca	37	X	18343062	18343062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
SUPT20HL2	170067	bcgsc.ca	37	X	24329897	24329902	+	In_Frame_Del	DEL	AGCAGG	AGCAGG	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	AGCAGG	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
SUPT20HL1	100130302	bcgsc.ca	37	X	24381387	24381387	+	Silent	SNP	G	G	C	rs1207577	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
NUDT10	170685	bcgsc.ca	37	X	51076018	51076018	+	Silent	SNP	C	C	T	rs12846945	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	2	2	0	0	0
FAM104B	90736	broad.mit.edu;ucsc.edu	37	X	55172537	55172537	+	Nonsense_Mutation	SNP	G	G	A	rs1047054	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	38	26	12	0	0
BCYRN1	618	bcgsc.ca	37	X	70890746	70890747	+	RNA	DEL	TT	TT	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	TT	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ZNF711	7552	broad.mit.edu;bcgsc.ca	37	X	84520165	84520165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	24	24	0	0	0
KLHL4	56062	bcgsc.ca	37	X	86877348	86877348	+	Silent	SNP	G	G	T	rs2273050	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
MAGEA4	4103	bcgsc.ca	37	X	151092220	151092220	+	Silent	SNP	A	A	G	rs1047248	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
RSU1P2	100133308	broad.mit.edu	37	10	45647622	45647623	+	RNA	INS	-	-	TTG	rs3041509	bycluster;by1000genomes	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
CBX4	8535	hgsc.bcm.edu	37	17	77807917	77807918	+	In_Frame_Ins	INS	-	-	GCCGCC	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
HSPBP1	23640	broad.mit.edu	37	19	55790886	55790887	+	In_Frame_Ins	INS	-	-	GCCGCCGCC	rs3040014	bycluster;by1000genomes	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
LAMA5	3911	broad.mit.edu	37	20	60895697	60895698	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
KCTD8	386617	hgsc.bcm.edu	37	4	44449953	44449954	+	In_Frame_Ins	INS	-	-	CCA	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797315	128797316	+	In_Frame_Ins	INS	-	-	CCCGGC	rs142924298		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
SLC4A2	6522	hgsc.bcm.edu;broad.mit.edu	37	7	150763615	150763616	+	In_Frame_Ins	INS	-	-	GGAGGC	rs150330052		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76752544	76752545	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	0	0	0	0	0
