Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRAMEF1	65121	ucsc.edu	37	1	12854162	12854162	+	Missense_Mutation	SNP	C	C	T	rs199893374		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
UBR4	23352	bcgsc.ca	37	1	19433449	19433449	+	Silent	SNP	A	A	G	rs6426677	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ZMPSTE24	10269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40758252	40758252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	25	0	25	0	0
BEST4	266675	hgsc.bcm.edu	37	1	45252159	45252159	+	Missense_Mutation	SNP	T	T	C	rs41306591		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47325357	47325357	+	RNA	SNP	A	A	G	rs75156930		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
CTBS	1486	broad.mit.edu	37	1	85039999	85040007	+	In_Frame_Del	DEL	GCAGCGCCA	GCAGCGCCA	-	rs142534762	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ATP1A1OS	84852	broad.mit.edu	37	1	116948712	116948712	+	RNA	SNP	G	G	A	rs850610	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	1	1	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120612006	120612006	+	Silent	SNP	G	G	A	rs77243975	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	4	0	4	0	0
CGN	57530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151503099	151503099	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	4	1	3	0	0
GATAD2B	57459	bcgsc.ca	37	1	153788863	153788863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	2	2	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	1	0	1	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186031090	186031090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	6	0	6	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
OR2T27	403239	bcgsc.ca	37	1	248813723	248813723	+	Missense_Mutation	SNP	C	C	T	rs71642467		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ADARB2-AS1	642394	bcgsc.ca	37	10	1578121	1578121	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
UPF2	26019	ucsc.edu;bcgsc.ca	37	10	11997479	11997479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	2	2	0	0	0
DLG5	9231	bcgsc.ca	37	10	79566632	79566632	+	Silent	SNP	G	G	A	rs1058198	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	4	4	0	0	0
CPEB3	22849	bcgsc.ca	37	10	93999850	93999850	+	Silent	SNP	A	A	G	rs3824734	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135000148	135000148	+	Silent	SNP	T	T	C	rs3810965	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135000159	135000159	+	Missense_Mutation	SNP	A	A	G	rs3810964	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1092884	1092884	+	Missense_Mutation	SNP	C	C	T	rs201415503		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
DNHD1	144132	bcgsc.ca	37	11	6588228	6588228	+	Missense_Mutation	SNP	G	G	A	rs10769699	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
MACROD1	28992	bcgsc.ca	37	11	63767186	63767186	+	Silent	SNP	A	A	G	rs709594	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	20	0	20	0	0
SLC22A12	116085	ucsc.edu;bcgsc.ca	37	11	64367862	64367862	+	Silent	SNP	T	T	C	rs7932775	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	60	0	60	0	0
P2RY2	5029	hgsc.bcm.edu	37	11	72945732	72945732	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	5	0	5	0	0
PGR	5241	hgsc.bcm.edu	37	11	100998531	100998531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
PRB4	5545	ucsc.edu;bcgsc.ca	37	12	11461745	11461745	+	Missense_Mutation	SNP	G	G	C	rs76859544		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	2	2	0	0	0
REP15	387849	bcgsc.ca	37	12	27849795	27849795	+	Silent	SNP	C	C	T	rs929948	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53663137	53663137	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	82147977	82147977	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	1	0	1	0	0
TUBA3C	7278	bcgsc.ca	37	13	19751274	19751274	+	Silent	SNP	G	G	A	rs143115179	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
TUBA3C	7278	bcgsc.ca	37	13	19751292	19751292	+	Silent	SNP	T	T	C	rs147482964	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
SPERT	220082	hgsc.bcm.edu	37	13	46288017	46288017	+	Nonsense_Mutation	SNP	C	C	A	rs79707842		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
RBM23	55147	ucsc.edu	37	14	23371268	23371268	+	Silent	SNP	A	A	G	rs56708790	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	20	8	12	0	0
AKAP6	9472	bcgsc.ca	37	14	33046388	33046388	+	Silent	SNP	A	A	G	rs1950703	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
PLEKHD1	400224	broad.mit.edu	37	14	69995112	69995112	+	Silent	SNP	G	G	A	rs55727771	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	1	1	0	0	0
ASPG	374569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	104573592	104573592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
MAP1A	4130	bcgsc.ca	37	15	43815999	43815999	+	Silent	SNP	C	C	T	rs3862138	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
DUOX2	50506	hgsc.bcm.edu	37	15	45403779	45403779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
TLN2	83660	ucsc.edu;bcgsc.ca	37	15	63017183	63017183	+	Missense_Mutation	SNP	A	A	C	rs148931336	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ACSBG1	23205	bcgsc.ca	37	15	78466127	78466127	+	Missense_Mutation	SNP	T	T	C	rs2304824	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
C16orf11	146325	hgsc.bcm.edu	37	16	613729	613729	+	Silent	SNP	T	T	G	rs45619831	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
GRIN2A	2903	bcgsc.ca	37	16	9943666	9943666	+	Silent	SNP	C	C	T	rs8049651	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu	37	17	4046101	4046101	+	Missense_Mutation	SNP	A	A	G	rs1454121		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
PELP1	27043	ucsc.edu;bcgsc.ca	37	17	4576216	4576216	+	Silent	SNP	G	G	A	rs147763003		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	30	30	0	0	0
MINK1	50488	bcgsc.ca	37	17	4797305	4797305	+	Missense_Mutation	SNP	G	G	A	rs2302319	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	42	42	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	53	3	50	0	0
ELAC2	60528	bcgsc.ca	37	17	12898295	12898295	+	Silent	SNP	T	T	C	rs17552022	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	84	84	0	0	0
TEKT3	64518	bcgsc.ca	37	17	15215660	15215660	+	Silent	SNP	T	T	C	rs2286516	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	1	1	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	15	3	12	0	0
SMCR7	125170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18168068	18168068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	13	0	13	0	0
USP32P2	220594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18416747	18416747	+	RNA	SNP	G	G	T	rs71372282	bycluster	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21904194	21904194	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
KRTAP4-11	653240	bcgsc.ca	37	17	39274319	39274319	+	Missense_Mutation	SNP	G	G	C	rs199712484		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
KRTAP4-11	653240	ucsc.edu	37	17	39274364	39274364	+	Missense_Mutation	SNP	T	T	G	rs425784		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu;bcgsc.ca	37	17	39274416	39274416	+	Missense_Mutation	SNP	C	C	T	rs408579	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
KLHL10	317719	broad.mit.edu	37	17	40004447	40004447	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
FAM20A	54757	hgsc.bcm.edu	37	17	66596769	66596769	+	Silent	SNP	C	C	T	rs2907388		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
LAMA3	3909	bcgsc.ca	37	18	21441717	21441717	+	Silent	SNP	C	C	T	rs12965685	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31323005	31323005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
MADCAM1	8174	hgsc.bcm.edu	37	19	498751	498751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	31	13	17	0	1
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	74	1	73	0	0
CILP2	148113	hgsc.bcm.edu	37	19	19651140	19651140	+	Silent	SNP	A	A	G	rs4808970	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	2	1	1	0	0
CGB7	94027	bcgsc.ca	37	19	49558216	49558216	+	Missense_Mutation	SNP	C	C	T	rs36106771	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	1	0	1	0	0
LENG9	94059	hgsc.bcm.edu	37	19	54974329	54974329	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
SBK2	646643	hgsc.bcm.edu	37	19	56041261	56041261	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ZIM3	114026	broad.mit.edu;bcgsc.ca	37	19	57648259	57648259	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
AGBL5	60509	broad.mit.edu;bcgsc.ca	37	2	27276815	27276815	+	Missense_Mutation	SNP	C	C	T	rs144135243		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	5	5	0	0	0
TTC27	55622	hgsc.bcm.edu;broad.mit.edu	37	2	33036125	33036125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	8	8	0	0	0
TMEM247	388946	hgsc.bcm.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
BCL11A	53335	ucsc.edu;mdanderson.org	37	2	60688336	60688336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	2	0	2	0	0
DYSF	8291	bcgsc.ca	37	2	71780215	71780215	+	Silent	SNP	T	T	C	rs2303596	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
DYSF	8291	broad.mit.edu	37	2	71892329	71892329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	6	4	2	0	0
LOC150776	0	broad.mit.edu	37	2	132275396	132275396	+	RNA	SNP	T	T	C	rs2277878	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	10	10	0	0	0
MARCH7	64844	bcgsc.ca	37	2	160599717	160599717	+	Missense_Mutation	SNP	C	C	G	rs17813964	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	3	3	0	0	0
XIRP2	129446	bcgsc.ca	37	2	168103304	168103304	+	Missense_Mutation	SNP	G	G	A	rs16853309	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
FASTKD1	79675	bcgsc.ca	37	2	170403030	170403030	+	Missense_Mutation	SNP	T	T	C	rs2253680	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	2	2	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	569	569	0	0	0
KLHL30	377007	hgsc.bcm.edu	37	2	239050142	239050142	+	Silent	SNP	G	G	A	rs73102336		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
LOC643387	0	broad.mit.edu	37	2	239140728	239140728	+	RNA	SNP	A	A	G	rs11689033	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
FERMT1	55612	bcgsc.ca	37	20	6096632	6096632	+	Silent	SNP	G	G	A	rs1056141	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
RRBP1	6238	hgsc.bcm.edu	37	20	17602360	17602360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	287	287	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26062225	26062234	+	RNA	DEL	TGCAGACCAG	TGCAGACCAG	-	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
MLLT10P1	140678	bcgsc.ca	37	20	29637965	29637965	+	RNA	SNP	G	G	A	rs6119123		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	3	3	0	0	0
ERGIC3	51614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34129865	34129865	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	181	103	78	0	0
DDX27	55661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47855847	47855847	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	60	60	0	0	0
RTDR1	27156	bcgsc.ca	37	22	23482460	23482460	+	Silent	SNP	A	A	G	rs4822360	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	12	12	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	21	21	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885599	29885604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
TTLL3	26140	bcgsc.ca	37	3	9867625	9867625	+	Silent	SNP	C	C	T	rs3732527	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	T	rs121913409	bycluster	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	45	1	44	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
FAM86DP	692099	broad.mit.edu	37	3	75476735	75476735	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	18	17	1	0	0
FAM86DP	692099	broad.mit.edu	37	3	75476737	75476737	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	18	18	0	0	0
CRYBG3	131544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97596823	97596823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	3	1	2	0	0
SPON2	10417	bcgsc.ca	37	4	1165748	1165748	+	Missense_Mutation	SNP	T	T	C	rs6836335	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	110	35	75	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	3	0	3	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044380	7044380	+	Missense_Mutation	SNP	C	C	T	rs871134		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	2	1	1	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502307	56502307	+	Missense_Mutation	SNP	G	G	T	rs3828555	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	1	0	1	0	0
ERAP1	51752	bcgsc.ca	37	5	96118852	96118852	+	Missense_Mutation	SNP	G	G	C	rs27044	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	6	6	0	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574170	140574175	+	In_Frame_Del	DEL	AGGCCG	AGGCCG	-	rs58244182	bycluster;alternate_allele	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
TUBB	203068	broad.mit.edu	37	6	30691786	30691786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	477	474	0	3	0
DAXX	1616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33288323	33288323	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	43	3	40	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
YIPF3	25844	bcgsc.ca	37	6	43481121	43481121	+	Silent	SNP	C	C	T	rs2231767	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	158	158	0	0	0
TMEM151B	441151	hgsc.bcm.edu	37	6	44243154	44243154	+	Silent	SNP	C	C	T	rs12194552	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
FAM46A	55603	broad.mit.edu	37	6	82461728	82461742	+	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	CCGCCGAAGTCGCCG	-	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
SMOC2	64094	hgsc.bcm.edu	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5427517	5427517	+	Silent	SNP	G	G	A	rs34693947	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	1	1	0	0	0
GTPBP10	85865	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	89982277	89982278	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
EPHB4	2050	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100417840	100417840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	36	23	13	0	0
TMEM229A	730130	hgsc.bcm.edu	37	7	123672457	123672462	+	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	GCTGCT	GCTGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ATP6V0A4	50617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138413506	138413506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	1	0	1	0	0
FAM83H	286077	hgsc.bcm.edu	37	8	144809268	144809268	+	Missense_Mutation	SNP	C	C	T	rs56148058	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	6	2	4	0	0
EPPK1	83481	bcgsc.ca	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
SCRT1	83482	hgsc.bcm.edu	37	8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	rs7013127		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	2	0	2	0	0
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	8528683	8528683	+	Missense_Mutation	SNP	C	C	A	rs149175517	alternate_allele	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
FREM1	158326	bcgsc.ca	37	9	14801687	14801687	+	Silent	SNP	T	T	C	rs10738380	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	1	1	0	0	0
FANCG	2189	bcgsc.ca	37	9	35076482	35076482	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	7	7	0	0	0
CNTNAP3	79937	hgsc.bcm.edu	37	9	39133031	39133031	+	Missense_Mutation	SNP	C	C	A	rs11794921	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	2	0	2	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126136139	126136139	+	Missense_Mutation	SNP	C	C	T	rs73571431		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	6	0	6	0	0
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	GCT	-	rs34222232	alternate_allele	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
CD24	100133941	bcgsc.ca;mdanderson.org	37	Y	21154569	21154569	+	Silent	SNP	A	A	G	rs17855271		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
CD24	100133941	bcgsc.ca;mdanderson.org	37	Y	21154603	21154603	+	RNA	SNP	A	A	C	rs79788321		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
SIX6	4990	broad.mit.edu	37	14	60977896	60977897	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
PELP1	27043	hgsc.bcm.edu	37	17	4576216	4576217	+	In_Frame_Ins	INS	-	-	GGCATGGGGCCTGCTGAA	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
LOC100616530	0	broad.mit.edu	37	8	96281480	96281481	+	RNA	INS	-	-	GGGGACCTGGC	rs142455613		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	0	0	0	0	0
