Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SRM	6723	hgsc.bcm.edu	37	1	11119899	11119899	+	Silent	SNP	T	T	C	rs7545802		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	22	0	22	0	0
ESPNP	284729	ucsc.edu	37	1	17034140	17034140	+	RNA	SNP	C	C	G	rs2988286		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
ESPNP	284729	broad.mit.edu	37	1	17043644	17043644	+	RNA	DEL	C	C	-	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
AKR7L	246181	hgsc.bcm.edu	37	1	19600479	19600501	+	RNA	DEL	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
RPS6KA1	6195	hgsc.bcm.edu	37	1	26856462	26856462	+	Silent	SNP	T	T	G	rs11800553	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
AGL	178	bcgsc.ca	37	1	100358103	100358103	+	Missense_Mutation	SNP	C	C	T	rs3753494	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	5	5	0	0	0
CHIA	27159	bcgsc.ca	37	1	111861974	111861974	+	Missense_Mutation	SNP	T	T	C	rs2275254	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	3	3	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	2	0	2	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
C1orf106	55765	bcgsc.ca	37	1	200878026	200878026	+	Missense_Mutation	SNP	A	A	T	rs41313912	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
PLXNA2	5362	broad.mit.edu	37	1	208390763	208390763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
GPRIN2	9721	bcgsc.ca	37	10	46999863	46999863	+	Missense_Mutation	SNP	C	C	G	rs4445576	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
WDFY4	57705	broad.mit.edu	37	10	50040722	50040722	+	Silent	SNP	C	C	A	rs12761517	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1093255	1093255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
WT1	7490	broad.mit.edu	37	11	32417887	32417887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
CHRM1	1128	bcgsc.ca	37	11	62677220	62677220	+	Silent	SNP	G	G	A	rs2067480	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
ZNHIT2	741	hgsc.bcm.edu	37	11	64884742	64884742	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	23	0	23	0	0
ROBO3	64221	broad.mit.edu	37	11	124740559	124740559	+	Missense_Mutation	SNP	C	C	T	rs151168595		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
DDX12P	440081	ucsc.edu	37	12	9585443	9585443	+	RNA	SNP	G	G	A	rs75455455		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
APOLD1	81575	hgsc.bcm.edu	37	12	12939892	12939892	+	Missense_Mutation	SNP	G	G	A	rs4763876		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	1	0	1	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	920	307	612	0	1
MARCH9	92979	hgsc.bcm.edu	37	12	58149446	58149446	+	Silent	SNP	C	C	T	rs1689582		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	1	0	1	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
ACACB	32	bcgsc.ca	37	12	109673448	109673448	+	Missense_Mutation	SNP	A	A	T	rs113524436	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
DNAJC15	29103	bcgsc.ca	37	13	43597865	43597865	+	Missense_Mutation	SNP	A	A	G	rs12015	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
IRS2	8660	hgsc.bcm.edu	37	13	110435728	110435728	+	Silent	SNP	C	C	G	rs75172981		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	1	0	1	0	0
SPACA7	122258	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113055396	113055396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
CPNE6	9362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24546115	24546115	+	Missense_Mutation	SNP	G	G	A	rs201909603		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
TGM1	7051	bcgsc.ca	37	14	24729687	24729687	+	Silent	SNP	C	C	T	rs35755034	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
MED6	10001	broad.mit.edu	37	14	71067484	71067504	+	RNA	DEL	GGCAGGAGAGAGGCAGGGGGT	GGCAGGAGAGAGGCAGGGGGT	-	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	51	0	51	0	0
C14orf180	400258	hgsc.bcm.edu	37	14	105054934	105054934	+	Silent	SNP	A	A	G	rs12880814	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
C14orf180	400258	hgsc.bcm.edu	37	14	105055119	105055127	+	Frame_Shift_Del	DEL	GACGGGCAG	GACGGGCAG	-	rs61397088	bycluster;alternate_allele	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	GACGGGCAG	GACGGGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
BRF1	2972	broad.mit.edu	37	14	105722726	105722726	+	Silent	SNP	T	T	C	rs1008628	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	1	1	0	0	0
WHAMMP2	440253	ucsc.edu	37	15	28991269	28991269	+	RNA	SNP	T	T	C	rs76489057		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	8	0	8	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	2	0	2	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79066581	79066581	+	Silent	SNP	G	G	A	rs74405922	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	2	0	2	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304626	3304626	+	Missense_Mutation	SNP	C	C	G	rs3743930	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
RNU6-76	100873777	bcgsc.ca	37	16	33544215	33544215	+	RNA	SNP	G	G	A	rs2527495		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
KCTD19	146212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67335694	67335694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	254	13	239	1	1
SPIRE2	84501	bcgsc.ca	37	16	89921057	89921057	+	Missense_Mutation	SNP	A	A	G	rs139065194		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
TM4SF5	9032	broad.mit.edu;bcgsc.ca	37	17	4685848	4685848	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7574023	7574023	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
MRM1	79922	broad.mit.edu	37	17	34958405	34958405	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	8	8	0	0	0
KRT36	8689	bcgsc.ca	37	17	39643646	39643646	+	Missense_Mutation	SNP	G	G	A	rs2301354	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	66511671	66511695	+	Frame_Shift_Del	DEL	AGAGACCCATGGCATTCCTCAGGGA	AGAGACCCATGGCATTCCTCAGGGA	-	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	AGAGACCCATGGCATTCCTCAGGGA	AGAGACCCATGGCATTCCTCAGGGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
SOCS6	9306	broad.mit.edu;bcgsc.ca	37	18	67993002	67993002	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	13	13	0	0	0
POLRMT	5442	hgsc.bcm.edu	37	19	621561	621561	+	Missense_Mutation	SNP	C	C	A	rs10421235		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	12	12	0	0	0
SHD	56961	bcgsc.ca	37	19	4280207	4280207	+	Silent	SNP	G	G	C	rs56261530	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
DUS3L	56931	bcgsc.ca	37	19	5789565	5789565	+	Missense_Mutation	SNP	T	T	C	rs2436487	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	4	0	4	0	0
KANK2	25959	hgsc.bcm.edu	37	19	11303817	11303817	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	1	0	1	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
SBSN	374897	bcgsc.ca	37	19	36015652	36015652	+	Silent	SNP	C	C	T	rs17705633	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
ZNF567	163081	bcgsc.ca	37	19	37210529	37210529	+	Silent	SNP	A	A	G	rs3108200	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
BCAT2	587	broad.mit.edu	37	19	49309949	49309949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	34	34	0	0	0
SIGLEC12	89858	bcgsc.ca	37	19	52004743	52004743	+	Missense_Mutation	SNP	G	G	A	rs3810110	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	1	1	0	0	0
LILRB3	11025	bcgsc.ca	37	19	54725992	54725992	+	Silent	SNP	G	G	A	rs148339740	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
ZNF419	79744	bcgsc.ca	37	19	58004346	58004346	+	Missense_Mutation	SNP	G	G	C	rs2074076	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	8	8	0	0	0
SDC1	6382	hgsc.bcm.edu	37	2	20403998	20403998	+	Missense_Mutation	SNP	G	G	A	rs141315088	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	18	18	0	0	0
ADCY3	109	bcgsc.ca	37	2	25046090	25046090	+	Silent	SNP	T	T	C	rs1127568	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
KHK	3795	broad.mit.edu	37	2	27317364	27317364	+	Missense_Mutation	SNP	C	C	T	rs201995559		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	8	8	0	0	0
CD8B	926	hgsc.bcm.edu	37	2	87088950	87088950	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
RNF149	284996	hgsc.bcm.edu	37	2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	rs11123868	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	1	0	1	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	125521361	125521361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
RNU6-81	100873780	ucsc.edu	37	2	132292791	132292791	+	RNA	SNP	T	T	C	rs3101988		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
AQP12B	653437	bcgsc.ca	37	2	241622195	241622195	+	Silent	SNP	T	T	C	rs184458523	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061818	26061818	+	RNA	SNP	G	G	C	rs112101451		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
CYP24A1	1591	hgsc.bcm.edu;bcgsc.ca	37	20	52788140	52788140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
DIDO1	11083	hgsc.bcm.edu	37	20	61512420	61512420	+	Missense_Mutation	SNP	C	C	T	rs201746991		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	1	1	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
PI4KAP2	375133	broad.mit.edu	37	22	21846329	21846329	+	RNA	DEL	C	C	-	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
SEC14L4	284904	ucsc.edu;bcgsc.ca	37	22	30891250	30891250	+	Silent	SNP	T	T	C	rs9606738	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
SEC14L4	284904	bcgsc.ca	37	22	30891294	30891294	+	Missense_Mutation	SNP	G	G	C	rs9606739	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195506460	195506460	+	Missense_Mutation	SNP	G	G	C	rs113130007	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
SDHAP1	255812	bcgsc.ca	37	3	195711705	195711705	+	RNA	SNP	A	A	G	rs2638901	bycluster	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388817	1388817	+	Missense_Mutation	SNP	C	C	G	rs71299249	alternate_allele	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	49	49	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388819	1388819	+	Missense_Mutation	SNP	T	T	C	rs144797159	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	43	42	1	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	33	0	33	0	0
MSANTD1	345222	hgsc.bcm.edu	37	4	3250964	3250964	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
PSAPL1	768239	bcgsc.ca	37	4	7435194	7435194	+	Silent	SNP	G	G	A	rs12498567	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
SOD3	6649	hgsc.bcm.edu	37	4	24801354	24801354	+	Silent	SNP	C	C	T	rs8192291	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	2	0	2	0	0
TMEM165	55858	hgsc.bcm.edu	37	4	56262374	56262374	+	Silent	SNP	A	A	G	rs1128141		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	4	2	2	0	0
UTP3	57050	hgsc.bcm.edu	37	4	71554691	71554693	+	In_Frame_Del	DEL	GGA	GGA	-	rs61104402	alternate_allele	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	GGA	GGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662231	77662231	+	Missense_Mutation	SNP	C	C	T	rs3733245		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
COQ2	27235	hgsc.bcm.edu	37	4	84205872	84205872	+	Missense_Mutation	SNP	C	C	A	rs6818847	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
RBM46	166863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	155720332	155720332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	162380371	162380371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
PDCD6	10016	hgsc.bcm.edu	37	5	271858	271869	+	In_Frame_Del	DEL	CCGGCCCTGGGG	CCGGCCCTGGGG	-	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	CCGGCCCTGGGG	CCGGCCCTGGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950712	79950738	+	In_Frame_Del	DEL	GCGGCCGCAGCGGCCGCAGCGCCCCCA	GCGGCCGCAGCGGCCGCAGCGCCCCCA	-	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	GCGGCCGCAGCGGCCGCAGCGCCCCCA	GCGGCCGCAGCGGCCGCAGCGCCCCCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
GPR98	84059	broad.mit.edu;ucsc.edu	37	5	89943537	89943537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
SAR1B	51128	bcgsc.ca	37	5	133945288	133945288	+	Silent	SNP	C	C	T	rs140899111	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	220	220	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	3	0	3	0	0
HIST1H2BK	85236	broad.mit.edu;bcgsc.ca	37	6	27114542	27114542	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	299	244	55	0	0
RUNX2	860	hgsc.bcm.edu	37	6	45390514	45390514	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
FAM46A	55603	hgsc.bcm.edu	37	6	82461742	82461742	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	1	1	0	0	0
WDR27	253769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170013695	170013695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	3	0	3	0	0
TBP	6908	bcgsc.ca	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	13	13	0	0	0
MICALL2	79778	hgsc.bcm.edu	37	7	1484572	1484572	+	Silent	SNP	A	A	G	rs10435184		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	5	0	5	0	0
BRAT1	221927	hgsc.bcm.edu	37	7	2578371	2578371	+	Missense_Mutation	SNP	G	G	A	rs56727079	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	82	53	29	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	3	2	1	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	22	0	22	0	0
GLI3	2737	hgsc.bcm.edu	37	7	42005678	42005678	+	Missense_Mutation	SNP	G	G	A	rs929387	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	2	0	2	0	0
SSPO	23145	hgsc.bcm.edu	37	7	149489784	149489784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
DPP6	1804	hgsc.bcm.edu	37	7	153750019	153750019	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
FAM135B	51059	bcgsc.ca	37	8	139165272	139165272	+	Silent	SNP	T	T	C	rs7835712	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
FAM135B	51059	bcgsc.ca	37	8	139165289	139165289	+	Missense_Mutation	SNP	T	T	C	rs7835830	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
GPR20	2843	broad.mit.edu;bcgsc.ca	37	8	142367099	142367099	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144997783	144997783	+	Missense_Mutation	SNP	G	G	A	rs74772299	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	3	2	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998514	144998514	+	Silent	SNP	C	C	T	rs75586449	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
NIPSNAP3A	25934	bcgsc.ca	37	9	107515214	107515214	+	Missense_Mutation	SNP	G	G	A	rs2274870	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	24	24	0	0	0
COL27A1	85301	bcgsc.ca	37	9	116967405	116967405	+	Silent	SNP	G	G	T	rs13290696	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	1	1	0	0	0
CACNA1B	774	hgsc.bcm.edu	37	9	140917779	140917779	+	Missense_Mutation	SNP	G	G	T	rs7873074	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
TUBBP5	643224	bcgsc.ca	37	9	141069905	141069905	+	RNA	SNP	C	C	T	rs71485051	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
ND2	0	bcgsc.ca	37	MT	5495	5495	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	3213	2997	215	1	0
LMX1B	4010	broad.mit.edu	37	9	129376842	129376843	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
KDM6B	23135	hgsc.bcm.edu	37	17	7750176	7750177	+	Missense_Mutation	DNP	TT	TT	CC	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	0	0	0	0	0
