Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
WASH7P	653635	bcgsc.ca	37	1	14673	14673	+	RNA	SNP	G	G	C	rs11582131	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3442	521	2917	3	1
WASH7P	653635	bcgsc.ca	37	1	17452	17452	+	RNA	SNP	C	C	T	rs71260066		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	31	16	15	0	0
SKI	6497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	2235335	2235335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	8	2	6	0	0
PRDM16	63976	hgsc.bcm.edu	37	1	3329263	3329263	+	Silent	SNP	C	C	T	rs115226069	byfrequency;by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PTCHD2	57540	broad.mit.edu;bcgsc.ca	37	1	11589895	11589895	+	Missense_Mutation	SNP	C	C	T	rs201439934		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
FBXO6	26270	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11728807	11728807	+	Missense_Mutation	SNP	G	G	A	rs146139993	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	45	31	14	0	0
MFN2	9927	broad.mit.edu	37	1	12069759	12069759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	45	45	0	0	0
FHAD1	114827	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15701119	15701119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CASP9	842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15820441	15820441	+	Silent	SNP	G	G	A	rs149161953		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	10	1	9	0	0
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19479813	19479813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	0	2	0	0
WNT4	54361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22446583	22446583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PIGV	55650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27121404	27121404	+	Silent	SNP	G	G	A	rs147229452		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	10	0	9	0	1
WASF2	10163	broad.mit.edu;bcgsc.ca	37	1	27736229	27736229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	39	38	1	0	0
EIF3I	8668	broad.mit.edu	37	1	32694136	32694136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	219	219	0	0	0
HDAC1	3065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32792571	32792571	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	84	1	83	0	0
AGO3	192669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36437637	36437637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SMAP2	64744	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40872411	40872411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CDC20	991	bcgsc.ca	37	1	43826794	43826794	+	Missense_Mutation	SNP	G	G	A	rs1801456	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44057523	44057523	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	2	1	0	0
GEMIN8P4	492303	ucsc.edu;bcgsc.ca	37	1	90459704	90459704	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	0	3	0	0
DNTTIP2	30836	broad.mit.edu;bcgsc.ca	37	1	94342201	94342201	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	25	24	1	0	0
PDZK1P1	728939	bcgsc.ca	37	1	145931852	145931852	+	RNA	SNP	A	A	C	rs35741835	bycluster	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
BCL9	607	bcgsc.ca	37	1	147092112	147092112	+	Silent	SNP	G	G	A	rs61754125	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	12	12	0	0	0
OTUD7B	56957	broad.mit.edu	37	1	149939226	149939226	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
RPTN	126638	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152128689	152128689	+	Missense_Mutation	SNP	C	C	T	rs201025925		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
FLG	2312	broad.mit.edu;bcgsc.ca	37	1	152286155	152286155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CLK2	1196	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155238573	155238573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	4	0	4	0	0
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155348172	155348172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PEAR1	375033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156882744	156882744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
COPA	1314	broad.mit.edu	37	1	160265920	160265920	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	38	38	0	0	0
POU2F1	5451	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167343435	167343435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
KIFAP3	22920	ucsc.edu;bcgsc.ca	37	1	169951997	169951997	+	Silent	SNP	C	C	T	rs33943686	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PRRC2C	23215	broad.mit.edu;bcgsc.ca	37	1	171506485	171506485	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	11	10	1	0	0
RC3H1	149041	broad.mit.edu	37	1	173912683	173912683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176833494	176833494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
ZNF648	127665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182025773	182025773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185956660	185956660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CFH	3075	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	196659281	196659281	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197060024	197060024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	0	2	0	0
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210856743	210856743	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216373375	216373375	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
DISP1	84976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223116579	223116579	+	Silent	SNP	G	G	A	rs143316612	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	0	3	0	0
OBSCN	84033	bcgsc.ca;mdanderson.org	37	1	228503565	228503565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	0	2	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504669	+	Silent	SNP	G	G	A	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ZBTB18	10472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244218382	244218382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	12	3	9	0	0
OR2T2	401992	bcgsc.ca	37	1	248616705	248616711	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	TGCTGCG	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
IDI2-AS1	55853	bcgsc.ca	37	10	1070808	1070808	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	7608357	7608357	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
DHTKD1	55526	ucsc.edu;bcgsc.ca	37	10	12142210	12142210	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	17	17	0	0	0
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	21971185	21971185	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24832505	24832505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	10	1	9	0	0
KIAA1462	57608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	30315257	30315257	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	1	1	0	0
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	34400183	34400183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	8	0	8	0	0
FZD8	8325	broad.mit.edu	37	10	35929442	35929442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
BMS1	9790	broad.mit.edu	37	10	43291975	43291975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	8	8	0	0	0
GDF10	2662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48428896	48428896	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64975209	64975209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
MICU1	10367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	74235015	74235015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	55	1	54	0	0
GRID1	2894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	87379740	87379740	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	8	0	8	0	0
MMRN2	79812	hgsc.bcm.edu	37	10	88702603	88702603	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	55	3	52	0	0
MYOF	26509	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	95103662	95103662	+	Missense_Mutation	SNP	C	C	T	rs201449564		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	7	1	6	0	0
XPNPEP1	7511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111633162	111633162	+	Missense_Mutation	SNP	C	C	T	rs201456347		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	33	1	32	0	0
MIR5694	100847064	bcgsc.ca	37	10	122359040	122359040	+	RNA	SNP	A	A	G	rs11594669	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
DMBT1	1755	ucsc.edu	37	10	124339362	124339362	+	Missense_Mutation	SNP	T	T	A	rs202149132	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
C10orf120	399814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124458908	124458908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
MUC6	4588	bcgsc.ca	37	11	1016835	1016835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
TRIM5	85363	broad.mit.edu	37	11	5701024	5701024	+	Silent	SNP	C	C	T	rs148054117	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	10	8	2	0	0
NRIP3	56675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9009807	9009807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
MICAL2	9645	bcgsc.ca	37	11	12265542	12265542	+	Silent	SNP	A	A	G	rs2270511	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PLEKHA7	144100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	16838355	16838355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
MRGPRX4	117196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18195449	18195449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
KIAA1549L	25758	bcgsc.ca	37	11	33564163	33564163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
FNBP4	23360	hgsc.bcm.edu	37	11	47788731	47788731	+	Missense_Mutation	SNP	G	G	C	rs112054219		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
TRIM51	84767	bcgsc.ca	37	11	55656479	55656479	+	Splice_Site	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SMTNL1	219537	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57313434	57313434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
C11orf95	65998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	63531283	63531283	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	13	0	13	0	0
RCOR2	283248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	63679516	63679516	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	0	3	0	0
RPS6KA4	8986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64127716	64127716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	8	0	8	0	0
MIR192	406967	broad.mit.edu	37	11	64658676	64658676	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65810719	65810719	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66483354	66483354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	0	3	0	0
PIWIL4	143689	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94340769	94340769	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108098418	108098418	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SORL1	6653	ucsc.edu;bcgsc.ca	37	11	121458770	121458770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	4	2	2	0	0
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	1906598	1906598	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
NRIP2	83714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2937196	2937196	+	Missense_Mutation	SNP	A	A	G	rs200104814		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	3	0	0	0
CD9	928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6342621	6342621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	265	136	129	0	0
DDX12P	440081	bcgsc.ca	37	12	9581613	9581613	+	RNA	SNP	T	T	C	rs11050922	bycluster	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
GPR19	2842	broad.mit.edu	37	12	12814274	12814274	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21962829	21962829	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26493203	26493203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	22	10	12	0	0
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26784944	26784944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PLEKHA8P1	51054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	45567092	45567092	+	RNA	SNP	C	C	T	rs145353585	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	2	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49420173	49420173	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	30	18	12	0	0
DHH	50846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49483720	49483720	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	16	9	7	0	0
DHH	50846	bcgsc.ca	37	12	49483989	49483989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	3	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1222	729	491	2	0
KRT7	3855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	52627326	52627326	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
KRT77	374454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53088535	53088535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ESYT1	23344	broad.mit.edu	37	12	56536719	56536719	+	Splice_Site	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
GPR182	11318	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57389484	57389484	+	Missense_Mutation	SNP	G	G	A	rs145408449	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57581075	57581075	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57584685	57584685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
KIF5A	3798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57965871	57965871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
MON2	23041	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	62940761	62940761	+	Missense_Mutation	SNP	G	G	A	rs201327821		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	10	4	6	0	0
MDM2	4193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69210628	69210628	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	1	2	0	0
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78515967	78515967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	86377312	86377312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88479859	88479859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	1	1	0	0
C12orf42	374470	broad.mit.edu	37	12	103699896	103699896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ALDH1L2	160428	ucsc.edu;bcgsc.ca	37	12	105464485	105464485	+	Silent	SNP	G	G	A	rs74449999	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PRDM4	11108	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108145670	108145670	+	Silent	SNP	G	G	A	rs146564582	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	33	17	16	0	0
RNFT2	84900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117273985	117273985	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
FBXW8	26259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117465865	117465865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120613993	120613993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	8	7	1	0	0
RHOF	54509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122217484	122217484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	48	26	22	0	0
SETD1B	23067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122261635	122261635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	10	8	2	0	0
VPS37B	79720	broad.mit.edu;bcgsc.ca	37	12	123351799	123351799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	21	3	18	0	0
RNF17	56163	bcgsc.ca	37	13	25367282	25367282	+	Missense_Mutation	SNP	A	A	C	rs1451568	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SLC7A1	6541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	30088674	30088674	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	8	0	8	0	0
ARL11	115761	ucsc.edu;bcgsc.ca;mdanderson.org	37	13	50204724	50204724	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	4	0	4	0	0
SLC10A2	6555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	103701788	103701788	+	Missense_Mutation	SNP	G	G	A	rs145541774		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113516786	113516786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	0	3	0	0
CHD8	57680	ucsc.edu	37	14	21859130	21859130	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	36	36	0	0	0
IRF9	10379	hgsc.bcm.edu;bcgsc.ca	37	14	24631381	24631381	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	24	0	24	0	0
RPL10L	140801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	47120739	47120739	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52478319	52478319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	2	0	0	0
DACT1	51339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59113818	59113818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
JKAMP	51528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	59970693	59970693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	50	50	0	0	0
NUMB	8650	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	73743997	73743997	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CCDC88C	440193	broad.mit.edu	37	14	91883084	91883084	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105416412	105416412	+	Silent	SNP	G	G	A	rs187143773	by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
HERC2P3	283755	ucsc.edu	37	15	20644830	20644830	+	RNA	SNP	T	T	C	rs28718154		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	13	8	5	0	0
CYFIP1	23191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	22940826	22940826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	11	1	10	0	0
PGBD4	161779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34396376	34396376	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	0	2	0	0
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45394110	45394110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	63063254	63063289	+	In_Frame_Del	DEL	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	-	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
IGDCC3	9543	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65622120	65622120	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CYP11A1	1583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74632008	74632008	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	841	34	805	1	1
CSPG4	1464	broad.mit.edu	37	15	75980201	75980201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ADAMTS7	11173	bcgsc.ca	37	15	79068601	79068601	+	Silent	SNP	G	G	A	rs189745536		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
RASGRF1	5923	broad.mit.edu	37	15	79307707	79307707	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	2	0	0	0
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79323771	79323771	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	6	0	6	0	0
MESDC2	23184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81271798	81271798	+	Missense_Mutation	SNP	C	C	T	rs185628590		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	72	1	71	0	0
IGF1R	3480	broad.mit.edu	37	15	99442820	99442820	+	Missense_Mutation	SNP	G	G	A	rs148662051		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	6	6	0	0	0
WASH3P	374666	broad.mit.edu	37	15	102516413	102516413	+	RNA	SNP	C	C	T	rs17855866	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	469	459	9	1	0
PRR25	388199	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	857545	857545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CASKIN1	57524	broad.mit.edu	37	16	2235145	2235145	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	10	10	0	0	0
C16orf59	80178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2514193	2514193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
PAQR4	124222	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3021279	3021279	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	29	21	8	0	0
ZSCAN10	84891	hgsc.bcm.edu;mdanderson.org	37	16	3139112	3139112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ZNF205	7755	broad.mit.edu	37	16	3169354	3169354	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	25	23	2	0	0
ZNF205	7755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3170139	3170139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	18	11	7	0	0
ZNF213	7760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3191159	3191159	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	20	11	9	0	0
C16orf96	342346	broad.mit.edu	37	16	4650307	4650307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
ZNF500	26048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4802835	4802835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	5	3	2	0	0
EARS2	124454	broad.mit.edu	37	16	23546407	23546407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	18	17	1	0	0
GTF3C1	2975	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27483225	27483225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	40	26	14	0	0
ZNF785	146540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30594258	30594258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	17	10	7	0	0
STX1B	112755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31004545	31004545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PRSS8	5652	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31143831	31143831	+	Silent	SNP	G	G	A	rs148214625		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	114	112	2	0	0
VPS35	55737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	46697064	46697064	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PHKB	5257	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	47644802	47644802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	75	38	37	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
KATNB1	10300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57775658	57775658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	44	34	10	0	0
CDH16	1014	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66944294	66944294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CDH16	1014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66946627	66946627	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ENKD1	84080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67697371	67697371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	52	22	30	0	0
CDH3	1001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	68732181	68732181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	2	0	0	0
COG8	84342	bcgsc.ca;mdanderson.org	37	16	69373210	69373210	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	11	3	8	0	0
PKD1L3	342372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	71976623	71976623	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
HPR	3250	ucsc.edu;bcgsc.ca	37	16	72108240	72108240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74491779	74491779	+	Silent	SNP	G	G	A	rs148460697	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
KARS	3735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	75665701	75665701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	197	101	96	0	0
GSE1	23199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	85699630	85699630	+	Missense_Mutation	SNP	T	T	C	rs17853763		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	22	22	0	0	0
FOXC2	2303	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	16	86602305	86602305	+	Missense_Mutation	SNP	A	A	G	rs138612549		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89346959	89346959	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	15	7	8	0	0
SPG7	6687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89611117	89611117	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	100	52	48	0	0
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1561614	1561614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	118	1	117	0	0
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2265553	2265553	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CLUH	23277	broad.mit.edu	37	17	2598787	2598787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	31	30	1	0	0
ATP2A3	489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3840801	3840801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
AIPL1	23746	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6329050	6329050	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
KIAA0753	9851	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6528100	6528100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
TP53	7157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7574017	7574017	+	Missense_Mutation	SNP	C	C	T	rs121912664		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	6	0	6	0	0
KDM6B	23135	bcgsc.ca	37	17	7751926	7751926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
LRRC48	83450	ucsc.edu;bcgsc.ca	37	17	17900841	17900841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
EVPLL	645027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	18286644	18286644	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27419408	27419408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	9	0	9	0	0
PIP4K2B	8396	ucsc.edu	37	17	36936800	36936800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	22	20	2	0	0
KRT12	3859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39018841	39018841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
KRT32	3882	bcgsc.ca	37	17	39619193	39619193	+	Missense_Mutation	SNP	C	C	T	rs11078993	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PTRF	284119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40574938	40574938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	112	5	107	0	0
HSD17B1	3292	hgsc.bcm.edu	37	17	40706906	40706906	+	Missense_Mutation	SNP	G	G	A	rs605059	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ASB16	92591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42254580	42254580	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	6	5	1	0	0
NGFR	4804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47590175	47590175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48741343	48741343	+	Silent	SNP	G	G	A	rs191057975		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	0	2	0	0
KIAA0195	9772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73484865	73484865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	17	1	15	1	0
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76570839	76570839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
LOC100294362	0	bcgsc.ca	37	17	78338157	78338157	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PCYT2	5833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79865456	79865456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	50	0	50	0	0
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80039618	80039618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	37	19	18	0	0
GREB1L	80000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	18981163	18981163	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
LAMA3	3909	ucsc.edu;bcgsc.ca	37	18	21456302	21456302	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SETBP1	26040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	42531274	42531274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
TXNL1	9352	broad.mit.edu	37	18	54305668	54305668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	40	40	0	0	0
SERPINB8	5271	broad.mit.edu;bcgsc.ca	37	18	61649031	61649031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	7	7	0	0	0
MADCAM1	8174	bcgsc.ca	37	19	501714	501714	+	Missense_Mutation	SNP	C	C	A	rs78071082	bycluster;byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
LPPR3	0	broad.mit.edu	37	19	814548	814548	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2129403	2129403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	24	2	22	0	0
TJP3	27134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3734400	3734400	+	Missense_Mutation	SNP	G	G	A	rs200603772	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PLIN3	10226	ucsc.edu	37	19	4852250	4852250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	148	148	0	0	0
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5143983	5143983	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
LOC100128568	0	bcgsc.ca	37	19	6002692	6002692	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SLC25A23	79085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6452332	6452332	+	Silent	SNP	G	G	A	rs148491192		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	0	2	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9076759	9076759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
TNPO2	30000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12814290	12814290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	74	0	74	0	0
PRDX2	7001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12910730	12910730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	738	1	736	0	1
RLN3	117579	broad.mit.edu	37	19	14139168	14139168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CYP4F11	57834	broad.mit.edu;bcgsc.ca	37	19	16045121	16045121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
NR2F6	2063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17343368	17343368	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	46	0	46	0	0
NR2C2AP	126382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19313147	19313147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
CHST8	64377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34263477	34263477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
RYR1	6261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38931501	38931501	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
FCGBP	8857	broad.mit.edu	37	19	40376473	40376473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
AXL	558	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41726567	41726567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
TMEM145	284339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42821906	42821906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
IRGQ	126298	bcgsc.ca	37	19	44096816	44096816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
ZNF225	7768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44636010	44636010	+	Missense_Mutation	SNP	C	C	T	rs200370101		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
APOE	348	hgsc.bcm.edu	37	19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	rs429358	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	630	3	625	0	2
TULP2	7288	ucsc.edu	37	19	49399726	49399726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ZNF473	25888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50549939	50549939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	10	0	10	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
VSIG10L	147645	broad.mit.edu	37	19	51837102	51837102	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	2	0	0	0
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54669182	54669182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	4	2	2	0	0
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56544918	56544918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58579725	58579725	+	Missense_Mutation	SNP	C	C	T	rs138910447		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	4	0	4	0	0
ZNF324	25799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58982784	58982784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	4	2	2	0	0
MZF1	7593	broad.mit.edu	37	19	59082627	59082627	+	Missense_Mutation	SNP	G	G	A	rs199500324	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	12	12	0	0	0
RNF144A	9781	broad.mit.edu	37	2	7164508	7164508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
MPV17	4358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27535925	27535925	+	Missense_Mutation	SNP	C	C	T	rs140992482		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	15	5	10	0	0
CLIP4	79745	bcgsc.ca	37	2	29366643	29366643	+	Silent	SNP	C	C	T	rs115153920	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	7	4	3	0	0
TMEM247	388946	hgsc.bcm.edu	37	2	46707887	46707887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
MSH6	2956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48026605	48026605	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	0	2	0	0
PSME4	23198	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	54159045	54159045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
GMCL1	64395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70096886	70096886	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	12	0	12	0	0
PCBP1	5093	broad.mit.edu	37	2	70315210	70315210	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	253	253	0	0	0
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84899458	84899458	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
MRPS5	64969	ucsc.edu	37	2	95766639	95766639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
INPP4A	3631	broad.mit.edu	37	2	99155995	99155995	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
BCL2L11	10018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	111921764	111921764	+	Nonsense_Mutation	SNP	C	C	T	rs138706378	byfrequency;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	0	2	0	0
IL1RN	3557	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113885278	113885278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
WASH2P	375260	bcgsc.ca	37	2	114356106	114356106	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	43	42	1	0	0
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133541906	133541906	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
DLX1	1745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172951487	172951487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179592882	179592882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
COL5A2	1290	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189948711	189948711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
MFSD6	54842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191301884	191301884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	28	2	26	0	0
LOC643387	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	239141307	239141307	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3210042	3210042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
ADAM33	80332	hgsc.bcm.edu	37	20	3654433	3654433	+	Silent	SNP	C	C	T	rs2271511	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SIGLEC1	6614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3673211	3673211	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8609053	8609053	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	2	0	0	0
ISM1	140862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13269302	13269302	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	9	6	3	0	0
RRBP1	6238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	17622479	17622479	+	Missense_Mutation	SNP	G	G	A	rs146531264	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	304	279	24	1	0
RBBP9	10741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18471080	18471080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	16	7	9	0	0
CST9	128822	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23586287	23586287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29625842	29625842	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29625845	29625845	+	RNA	SNP	A	A	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
NCOA6	23054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33329666	33329666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	49	24	25	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
ADA	100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43251246	43251246	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	7	5	2	0	0
ZBP1	81030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56186832	56186832	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SLMO2	51012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57611597	57611597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	50	28	22	0	0
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58452496	58452496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	4	2	2	0	0
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60348149	60348149	+	Missense_Mutation	SNP	G	G	A	rs143400273	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	9	5	4	0	0
LAMA5	3911	broad.mit.edu;bcgsc.ca	37	20	60891828	60891828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
RTEL1	51750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62297419	62297419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
RTEL1	51750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62309673	62309673	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	19	9	10	0	0
GRIK1	2897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31062246	31062246	+	Missense_Mutation	SNP	C	C	T	rs142436130		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
RRP1B	23076	ucsc.edu;bcgsc.ca	37	21	45107797	45107797	+	Silent	SNP	G	G	A	rs143773984	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	7	0	7	0	0
COL6A2	1292	broad.mit.edu;bcgsc.ca	37	21	47539706	47539706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PCNT	5116	broad.mit.edu	37	21	47831434	47831434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	4	3	1	0	0
TUBA8	51807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18609364	18609364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	0	2	0	0
DGCR8	54487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	20073745	20073745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	3	0	0	0
PIWIL3	440822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	25150089	25150089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31971289	31971289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	2	0	0	0
TRIOBP	11078	broad.mit.edu	37	22	38121765	38121765	+	Nonsense_Mutation	SNP	C	C	T	rs118204030		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PPP6R2	9701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50845169	50845169	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	17	10	7	0	0
CNTN6	27255	broad.mit.edu	37	3	1415404	1415404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
NUP210	23225	bcgsc.ca	37	3	13368892	13368892	+	Silent	SNP	G	G	A	rs2271509	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	9	9	0	0	0
FGD5P1	100132526	bcgsc.ca	37	3	13978139	13978139	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
C3orf20	84077	ucsc.edu;bcgsc.ca	37	3	14724408	14724408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SUSD5	26032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33216542	33216542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	36873092	36873092	+	Missense_Mutation	SNP	C	C	T	rs200132397		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	4	0	4	0	0
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38080909	38080909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
RPL14	9045	bcgsc.ca	37	3	40503520	40503520	+	Missense_Mutation	SNP	A	A	G	rs61749576	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	389	388	0	0	1
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47453643	47453643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	22	3	19	0	0
AMT	275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49459642	49459642	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
SEMA3F	6405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50211681	50211681	+	Silent	SNP	C	C	T	rs200273983		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	6	5	1	0	0
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52425313	52425313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	6	0	6	0	0
NISCH	11188	broad.mit.edu	37	3	52522397	52522397	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	33	33	0	0	0
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52536666	52536666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52553340	52553340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	4	4	0	0	0
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52820426	52820426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	64085464	64085464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
FILIP1L	11259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	99643213	99643213	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108174589	108174589	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	114070578	114070578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SLC12A8	84561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124854609	124854609	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130124438	130124438	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
ARMC8	25852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137942520	137942520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	9	0	9	0	0
PLS1	5357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142408558	142408558	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
TNIK	23043	ucsc.edu;bcgsc.ca	37	3	170789054	170789054	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
MAEA	10296	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1305792	1305792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	36	15	21	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388817	1388817	+	Missense_Mutation	SNP	C	C	G	rs71299249	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	51	50	1	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388819	1388819	+	Missense_Mutation	SNP	T	T	C	rs144797159	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	46	46	0	0	0
LETM1	3954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1836604	1836604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	26	17	9	0	0
DOK7	285489	broad.mit.edu	37	4	3494664	3494664	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
STX18	53407	broad.mit.edu	37	4	4461210	4461210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
EVC	2121	bcgsc.ca	37	4	5800494	5800494	+	Missense_Mutation	SNP	G	G	A	rs2279252	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SOD3	6649	hgsc.bcm.edu	37	4	24801354	24801354	+	Silent	SNP	C	C	T	rs8192291	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	3	0	0	0
ANAPC4	29945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25419944	25419944	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	25	12	13	0	0
SRP72	6731	bcgsc.ca;mdanderson.org	37	4	57350950	57350950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	37	21	16	0	0
PF4	5196	broad.mit.edu;bcgsc.ca	37	4	74847662	74847662	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
FRAS1	80144	broad.mit.edu	37	4	79393383	79393383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
COL25A1	84570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	109810390	109810390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
LARP7	51574	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	113570694	113570694	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
FABP2	2169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	120240719	120240719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	35	7	28	0	0
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185340688	185340688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	33	19	14	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187629666	187629666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
LRRC14B	389257	hgsc.bcm.edu	37	5	191992	191992	+	Silent	SNP	G	G	A	rs34710524	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
EXOC3	11336	broad.mit.edu	37	5	466881	466881	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	63	60	3	0	0
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1089183	1089183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
LOC728613	0	bcgsc.ca	37	5	1616409	1616409	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	33	33	0	0	0
PARP8	79668	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	50090917	50090917	+	Missense_Mutation	SNP	G	G	A	rs201467874		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	38	20	17	1	0
SNX18	112574	hgsc.bcm.edu	37	5	53814052	53814052	+	Silent	SNP	T	T	C	rs2548615		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SGTB	54557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65000123	65000123	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
GCNT4	51301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74325230	74325230	+	Silent	SNP	C	C	T	rs148761969	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	2	1	0	0
ARSB	411	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78076460	78076460	+	Silent	SNP	C	C	T	rs35757003	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	4	3	1	0	0
CKMT2	1160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80548557	80548557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	6	1	5	0	0
HAPLN1	1404	bcgsc.ca	37	5	82937410	82937410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
LMNB1	4001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	126154661	126154661	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	25	18	7	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PCDHB11	56125	ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140581614	140581614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
TCOF1	6949	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149755751	149755751	+	Missense_Mutation	SNP	G	G	A	rs146735293	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	26	13	13	0	0
RNF145	153830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158595954	158595954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	40	24	16	0	0
GABRB2	2561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160757958	160757958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	2	1	0	0
TENM2	57451	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167674406	167674406	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
UNC5A	90249	broad.mit.edu;bcgsc.ca	37	5	176305512	176305512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PDLIM7	9260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176916510	176916510	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
FAM193B	54540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176951844	176951844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	31	17	14	0	0
B4GALT7	11285	broad.mit.edu	37	5	177034387	177034387	+	Silent	SNP	G	G	A	rs140848441		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	41	41	0	0	0
LOC728554	0	bcgsc.ca	37	5	177309353	177309353	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179193193	179193193	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	22	15	7	0	0
FLT4	2324	broad.mit.edu	37	5	180051011	180051011	+	Missense_Mutation	SNP	G	G	A	rs146167161	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
OR2V1	26693	bcgsc.ca	37	5	180551926	180551926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
JARID2	3720	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15501341	15501341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24533862	24533862	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	11	11	0	0	0
GUSBP2	387036	bcgsc.ca	37	6	26867500	26867500	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
GPANK1	7918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31630341	31630341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	34	2	32	0	0
C2	717	broad.mit.edu	37	6	31895915	31895915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
RNF5P1	286140	bcgsc.ca	37	6	32147341	32147341	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
HLA-DQB1	3119	bcgsc.ca	37	6	32632770	32632770	+	Missense_Mutation	SNP	A	A	G	rs1049069	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	6	6	0	0	0
TREML2	79865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41165918	41165918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	11	0	11	0	0
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44222512	44222512	+	Silent	SNP	G	G	A	rs146186426		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	109	1	108	0	0
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107390834	107390834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	0	2	0	0
TULP4	56995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	158900783	158900783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
HEATR2	54919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	780485	780485	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	7	1	6	0	0
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4169611	4169611	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PMS2	5395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6042243	6042243	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	13	13	0	0	0
C7orf26	79034	broad.mit.edu	37	7	6639759	6639759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	16	16	0	0	0
INHBA-AS1	285954	broad.mit.edu	37	7	41797976	41797976	+	RNA	DEL	T	T	-	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	43351432	43351432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PHKG1	5260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	56149873	56149873	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	4	0	4	0	0
GTF2IRD1P1	729156	bcgsc.ca	37	7	66298089	66298089	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PMS2P4	5382	broad.mit.edu	37	7	66762432	66762432	+	RNA	DEL	G	G	-	rs56075617	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
GTPBP10	85865	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	89982177	89982177	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
TSC22D4	81628	bcgsc.ca	37	7	100064719	100064719	+	Silent	SNP	A	A	G	rs7806537	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	425	425	0	0	0
DOCK4	9732	broad.mit.edu	37	7	111629088	111629088	+	Missense_Mutation	SNP	C	C	T	rs200422451		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	131913155	131913155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	0	1	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151864452	151864452	+	Missense_Mutation	SNP	G	G	A	rs145072739		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8185743	8185743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2	2	0	0	0
SOX7	83595	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	10583913	10583913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
DLC1	10395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	12950218	12950218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	5	3	2	0	0
MTUS1	57509	broad.mit.edu;bcgsc.ca	37	8	17611345	17611345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	16	16	0	0	0
SH2D4A	63898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	19221709	19221709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	13	9	4	0	0
ENTPD4	9583	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23302032	23302032	+	Missense_Mutation	SNP	G	G	A	rs200123530	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	13	10	3	0	0
UBE2V2	7336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	48955657	48955657	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	38	37	1	0	0
YTHDF3	253943	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	64099263	64099263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	16	5	11	0	0
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68939483	68939483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
OSR2	116039	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99961683	99961683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	26	15	11	0	0
RIMS2	9699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105263855	105263855	+	Missense_Mutation	SNP	G	G	A	rs200286153	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	9	5	3	1	0
UTP23	84294	bcgsc.ca	37	8	117778849	117778849	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	10	5	5	0	0
C8orf31	286122	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144126154	144126154	+	Missense_Mutation	SNP	G	G	A	rs74447754	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	27	12	15	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	9	0	9	0	0
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144940488	144940488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940621	144940621	+	Silent	SNP	C	C	T	rs201634698		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
EPPK1	83481	broad.mit.edu	37	8	144942188	144942188	+	Missense_Mutation	SNP	C	C	T	rs187594766	by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144994967	144994967	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	41	20	21	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	7	0	7	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	23	0	22	1	0
RECQL4	9401	bcgsc.ca	37	8	145738769	145738769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
LRRC14	9684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145745151	145745151	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	14	7	7	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	6	0	6	0	0
WASH1	100287171	bcgsc.ca	37	9	14810	14810	+	Silent	SNP	C	C	G	rs71509922	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3549	371	3176	1	1
WASH1	100287171	hgsc.bcm.edu	37	9	14858	14858	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	15	15	0	0	0
SMARCA2	6595	broad.mit.edu	37	9	2088608	2088608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
TESK1	7016	bcgsc.ca	37	9	35609536	35609536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	22	1	21	0	0
FBXO10	26267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	37516027	37516027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	5	1	4	0	0
LOC642236	0	bcgsc.ca	37	9	68427893	68427893	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	2	1	0	0
ANXA1	301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	75774284	75774284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	124	6	118	0	0
SPATA31D5P	347127	bcgsc.ca	37	9	84528587	84528587	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SPATA31E1	286234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90503505	90503505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
GABBR2	9568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101258725	101258725	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
GPR144	347088	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127239354	127239354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SEC16A	9919	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139354235	139354235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	8	0	8	0	0
C9orf172	389813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139739046	139739046	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	0	3	0	0
MXRA5	25878	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	3228791	3228791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CA5BP1	340591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	15720909	15720909	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	6	5	1	0	0
CDKL5	6792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	18525233	18525233	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
NYX	60506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	41333840	41333840	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
CXorf36	79742	broad.mit.edu	37	X	45017131	45017131	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
RBM10	8241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47039883	47039883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	27	15	12	0	0
GATA1	2623	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48649679	48649679	+	Missense_Mutation	SNP	G	G	A	rs150572851	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	5	5	0	0	0
TSPYL2	64061	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53112257	53112257	+	Missense_Mutation	SNP	C	C	T	rs192279149	by1000genomes;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	32	32	0	0	0
TRO	7216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54951477	54951477	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	8	0	8	0	0
FAM155B	27112	broad.mit.edu;bcgsc.ca	37	X	68749609	68749609	+	Missense_Mutation	SNP	G	G	A	rs201655694		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	1	1	0	0	0
PDZD11	51248	broad.mit.edu;bcgsc.ca	37	X	69508314	69508314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	196	182	13	0	1
TCEAL2	140597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101382400	101382400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
NXF4	55999	broad.mit.edu	37	X	101805097	101805097	+	RNA	SNP	C	C	T	rs35532477	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107812000	107812000	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	114425196	114425196	+	Missense_Mutation	SNP	G	G	A	rs12399211		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
RBMXL3	139804	hgsc.bcm.edu;ucsc.edu	37	X	114425210	114425210	+	Silent	SNP	G	G	A	rs12399213		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SLC6A14	11254	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	115582608	115582608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
SLC25A5-AS1	100303728	bcgsc.ca	37	X	118602448	118602448	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	744	7	737	0	0
RPL39	6170	broad.mit.edu	37	X	118923904	118923904	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	2280	2278	0	2	0
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129190051	129190051	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	3	1	2	0	0
MAMLD1	10046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	149639048	149639048	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	23	23	0	0	0
HAUS7	55559	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	152735950	152735950	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	24	24	0	0	0
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153588004	153588004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
GPT2	84706	broad.mit.edu	37	16	46934689	46934690	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
TMEM247	388946	hgsc.bcm.edu	37	2	46707883	46707884	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	0	0	0	0	0
