Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRAMEF11	440560	ucsc.edu;bcgsc.ca	37	1	12884981	12884981	+	Missense_Mutation	SNP	T	T	C	rs71225486		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
LRRC38	126755	broad.mit.edu;bcgsc.ca	37	1	13802437	13802437	+	Silent	SNP	G	G	A	rs3013106	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	26	26	0	0	0
SDHB	6390	broad.mit.edu	37	1	17380491	17380491	+	Silent	SNP	G	G	A	rs148738139	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
PADI4	23569	bcgsc.ca	37	1	17660499	17660499	+	Missense_Mutation	SNP	G	G	C	rs874881	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
KIF17	57576	bcgsc.ca	37	1	21012575	21012575	+	Silent	SNP	G	G	A	rs479323	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22180824	22180824	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	12	5	7	0	0
CYP4Z2P	163720	bcgsc.ca	37	1	47325354	47325354	+	RNA	SNP	G	G	A	rs4660360		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
ALG6	29929	ucsc.edu;bcgsc.ca	37	1	63885045	63885045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
KCNN3	3782	bcgsc.ca	37	1	154744852	154744852	+	Silent	SNP	A	A	G	rs1131820	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SOAT1	6646	ucsc.edu;bcgsc.ca	37	1	179312752	179312752	+	Silent	SNP	C	C	T	rs10753191	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	247	247	0	0	0
IGFN1	91156	bcgsc.ca	37	1	201184275	201184275	+	Silent	SNP	C	C	T	rs2275673	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SLC26A9	115019	broad.mit.edu	37	1	205898454	205898454	+	Missense_Mutation	SNP	G	G	A	rs143411715	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
IBA57	200205	broad.mit.edu	37	1	228362441	228362441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	1	1	0	0	0
OBSCN	84033	bcgsc.ca	37	1	228494790	228494790	+	Missense_Mutation	SNP	G	G	A	rs435776	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	4	4	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504669	+	Silent	SNP	G	G	A	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	2	0	2	0	0
PGBD5	79605	broad.mit.edu	37	1	230492646	230492646	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
FMN2	56776	broad.mit.edu	37	1	240255569	240255571	+	In_Frame_Del	DEL	GGC	GGC	-	rs72215772	alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MYO3A	53904	bcgsc.ca	37	10	26463130	26463130	+	Missense_Mutation	SNP	C	C	A	rs1999240	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	4	4	0	0	0
ZNF485	220992	bcgsc.ca	37	10	44111806	44111806	+	Silent	SNP	G	G	A	rs10899839	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	3	3	0	0	0
FAM21B	55747	bcgsc.ca	37	10	47915898	47915898	+	Silent	SNP	A	A	G	rs61856727	bycluster;byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	1	0	1	0	0
BMS1P4	729096	broad.mit.edu	37	10	75476824	75476824	+	RNA	DEL	A	A	-	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
CDHR1	92211	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	85978991	85978991	+	Silent	SNP	C	C	T	rs7895270	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
RRP12	23223	bcgsc.ca	37	10	99155984	99155984	+	Silent	SNP	G	G	A	rs3814553	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
GSTO2	119391	bcgsc.ca	37	10	106039185	106039185	+	Missense_Mutation	SNP	A	A	G	rs156697	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	4	4	0	0	0
JAKMIP3	282973	bcgsc.ca	37	10	133954011	133954011	+	Silent	SNP	C	C	T	rs2818387	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
TTC40	54777	broad.mit.edu	37	10	134726621	134726621	+	Silent	SNP	G	G	C	rs4880467	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1092947	1092947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1271223	1271223	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
OR56A4	120793	bcgsc.ca	37	11	6023818	6023818	+	Silent	SNP	G	G	A	rs10839221	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
OR56A4	120793	ucsc.edu;bcgsc.ca	37	11	6023924	6023924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
USH1C	10083	bcgsc.ca	37	11	17542439	17542439	+	Silent	SNP	T	T	C	rs2240487	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
LOC440040	0	bcgsc.ca	37	11	49598178	49598178	+	RNA	SNP	G	G	A	rs7101761	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
EHBP1L1	254102	bcgsc.ca	37	11	65351074	65351074	+	Silent	SNP	G	G	A	rs10896018	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	1	1	0	0	0
PRKRIR	5612	hgsc.bcm.edu	37	11	76072085	76072085	+	Missense_Mutation	SNP	C	C	T	rs76214254	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	6	6	0	0	0
C11orf63	79864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122817236	122817236	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
FOXM1	2305	bcgsc.ca	37	12	2968169	2968169	+	Missense_Mutation	SNP	A	A	G	rs3742076	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	22	0	22	0	0
TAS2R43	259289	bcgsc.ca	37	12	11244126	11244126	+	Missense_Mutation	SNP	G	G	A	rs113410031	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
TAS2R43	259289	bcgsc.ca	37	12	11244149	11244149	+	Missense_Mutation	SNP	G	G	A	rs73064964		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
TAS2R43	259289	bcgsc.ca	37	12	11244169	11244169	+	Silent	SNP	G	G	A	rs201144595		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
TAS2R43	259289	bcgsc.ca	37	12	11244190	11244190	+	Silent	SNP	A	A	G	rs202034865	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
TAS2R43	259289	bcgsc.ca	37	12	11244687	11244687	+	Missense_Mutation	SNP	G	G	C	rs113197337		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
PRB4	5545	ucsc.edu	37	12	11461596	11461596	+	Silent	SNP	T	T	G	rs59021567		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SLCO1B1	10599	bcgsc.ca	37	12	21331549	21331549	+	Missense_Mutation	SNP	T	T	C	rs4149056	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SENP1	29843	bcgsc.ca	37	12	48477416	48477416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	5	5	0	0	0
MLL2	8085	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49445552	49445552	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	3	0	3	0	0
SLC35E3	55508	hgsc.bcm.edu;bcgsc.ca	37	12	69153001	69153001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	8	8	0	0	0
DTX1	1840	bcgsc.ca	37	12	113533150	113533150	+	Silent	SNP	C	C	T	rs61758446	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
HCAR1	27198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123214708	123214708	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
XPO4	64328	bcgsc.ca	37	13	21374333	21374333	+	Silent	SNP	A	A	G	rs9579954	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	3	3	0	0	0
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	88330510	88330517	+	Frame_Shift_Del	DEL	GCCAGTTC	GCCAGTTC	-	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	GCCAGTTC	GCCAGTTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
GAS6	2621	hgsc.bcm.edu	37	13	114525009	114525009	+	Missense_Mutation	SNP	C	C	T	rs144262744	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	23	3	19	0	1
ZNF219	51222	hgsc.bcm.edu	37	14	21560706	21560706	+	Silent	SNP	C	C	G	rs1065496	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	79	32	46	1	0
FAM161B	145483	bcgsc.ca	37	14	74402693	74402693	+	Silent	SNP	C	C	T	rs17182699	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	7	7	0	0	0
PAPOLA	10914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	96987355	96987355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	167	79	88	0	0
CEP170B	283638	broad.mit.edu	37	14	105359440	105359440	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	30	26	3	0	1
AHNAK2	113146	bcgsc.ca	37	14	105410183	105410183	+	Missense_Mutation	SNP	T	T	C	rs10438246	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
NPAP1	23742	hgsc.bcm.edu	37	15	24921176	24921176	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
C15orf62	643338	hgsc.bcm.edu	37	15	41062922	41062922	+	Silent	SNP	C	C	T	rs115347345	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
LCTL	197021	broad.mit.edu	37	15	66853375	66853375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
ZNF774	342132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90904066	90904066	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
CACNA1H	8912	hgsc.bcm.edu	37	16	1252124	1252124	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	7	3	4	0	0
TPSAB1	7177	bcgsc.ca	37	16	1291622	1291622	+	Missense_Mutation	SNP	A	A	G	rs1800992		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304463	3304463	+	Missense_Mutation	SNP	C	C	T	rs224222	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SMG1	23049	hgsc.bcm.edu	37	16	18937330	18937330	+	Missense_Mutation	SNP	T	T	C	rs190057031		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	7	1	6	0	0
PDILT	204474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20384188	20384188	+	Missense_Mutation	SNP	C	C	A	rs193085306	alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SEZ6L2	26470	hgsc.bcm.edu	37	16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	rs11649499	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
FBXL19	54620	hgsc.bcm.edu	37	16	30937068	30937068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
ARMC5	79798	hgsc.bcm.edu	37	16	31476186	31476186	+	Silent	SNP	C	C	G	rs55800131	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	12	7	5	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
EDC4	23644	broad.mit.edu	37	16	67913786	67913788	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	77389876	77389876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095573	90095573	+	Missense_Mutation	SNP	C	C	T	rs77382359		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
C16orf3	750	ucsc.edu	37	16	90095597	90095597	+	Missense_Mutation	SNP	T	T	C	rs61118444	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
OR3A4P	390756	bcgsc.ca	37	17	3213877	3213877	+	RNA	SNP	C	C	A	rs139602609	by1000genomes;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7574012	7574012	+	Nonsense_Mutation	SNP	C	C	A	rs17882252	byfrequency;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	3	0	3	0	0
KCNJ18	100134444	ucsc.edu;bcgsc.ca	37	17	21319943	21319943	+	Missense_Mutation	SNP	A	A	G	rs5021699	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21904822	21904822	+	RNA	SNP	A	A	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21904868	21904868	+	RNA	SNP	A	A	G	rs143827594		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
NOS2	4843	bcgsc.ca	37	17	26089867	26089867	+	Silent	SNP	T	T	C	rs1060826	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
C17orf66	256957	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	34190106	34190106	+	Silent	SNP	G	G	T	rs142219051	alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830562	36830562	+	Missense_Mutation	SNP	G	G	C	rs79676758		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
KRTAP4-8	728224	ucsc.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	A	T	rs76270529		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
KRTAP4-9	100132386	ucsc.edu	37	17	39261693	39261693	+	Missense_Mutation	SNP	A	A	T	rs113059833		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu;bcgsc.ca	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
KRTAP4-11	653240	ucsc.edu	37	17	39274291	39274291	+	Missense_Mutation	SNP	T	T	C	rs200214744		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
ASPSCR1	79058	hgsc.bcm.edu	37	17	79974915	79974916	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MYL12B	103910	broad.mit.edu;bcgsc.ca	37	18	3277813	3277813	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	1467	1461	6	0	0
CHST9	83539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	24497051	24497051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	5	0	5	0	0
ZNF77	58492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2934196	2934196	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	7	2	5	0	0
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4216002	4216002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	5	5	0	0	0
ICAM3	3385	bcgsc.ca	37	19	10450285	10450285	+	Silent	SNP	G	G	A	rs281414	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	3	3	0	0	0
OCEL1	79629	hgsc.bcm.edu	37	19	17337555	17337555	+	Silent	SNP	C	C	A	rs3745163	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	15	3	12	0	0
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40520223	40520223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
LILRA6	79168	bcgsc.ca	37	19	54746589	54746589	+	Silent	SNP	G	G	A	rs199943671	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
GP6	51206	hgsc.bcm.edu	37	19	55525497	55525497	+	Missense_Mutation	SNP	A	A	G	rs1671150	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SSC5D	284297	hgsc.bcm.edu	37	19	56002197	56002197	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
PLEKHH2	130271	ucsc.edu;bcgsc.ca	37	2	43931138	43931138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	1	1	0	0	0
TSPYL6	388951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	54482557	54482557	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SLC1A4	6509	broad.mit.edu	37	2	65217143	65217143	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	5	4	1	0	0
CAPG	822	bcgsc.ca	37	2	85628745	85628745	+	Silent	SNP	C	C	T	rs2229669	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	33	33	0	0	0
ANKRD20A8P	729171	ucsc.edu	37	2	95479078	95479078	+	RNA	SNP	T	T	C	rs2940837		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
DYNC1I2	1781	bcgsc.ca	37	2	172585298	172585298	+	Silent	SNP	T	T	C	rs78255103	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	112	112	0	0	0
SF3B1	23451	bcgsc.ca	37	2	198257795	198257795	+	Silent	SNP	T	T	C	rs4685	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	153	153	0	0	0
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217341854	217341854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	23	1	21	0	1
TM4SF20	79853	bcgsc.ca	37	2	228243905	228243905	+	Missense_Mutation	SNP	G	G	A	rs7574414	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MKKS	8195	bcgsc.ca	37	20	10386013	10386013	+	Missense_Mutation	SNP	C	C	A	rs1545	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	22	22	0	0	0
MKKS	8195	bcgsc.ca	37	20	10386059	10386059	+	Missense_Mutation	SNP	G	G	A	rs1547	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	24	24	0	0	0
SSTR4	6754	bcgsc.ca	37	20	23016970	23016970	+	Missense_Mutation	SNP	T	T	G	rs3746726	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SSTR4	6754	bcgsc.ca	37	20	23017017	23017017	+	Silent	SNP	T	T	C	rs2567609	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SSTR4	6754	bcgsc.ca	37	20	23017044	23017044	+	Silent	SNP	C	C	T	rs3746728	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061783	26061784	+	RNA	DEL	TT	TT	-	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628236	29628236	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
OCSTAMP	128506	ucsc.edu;bcgsc.ca	37	20	45170556	45170556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SLC9A8	23315	hgsc.bcm.edu	37	20	48429485	48429485	+	Missense_Mutation	SNP	A	A	C	rs61734269		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
CECR2	27443	bcgsc.ca	37	22	18003341	18003341	+	Silent	SNP	G	G	A	rs73159550	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
ZDHHC8	29801	hgsc.bcm.edu	37	22	20131121	20131121	+	Silent	SNP	G	G	C	rs145100111	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
AIFM3	150209	bcgsc.ca	37	22	21327589	21327589	+	Missense_Mutation	SNP	C	C	T	rs178264	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
POM121L1P	25812	bcgsc.ca	37	22	22977554	22977554	+	RNA	SNP	G	G	C	rs201670132	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SHANK3	85358	hgsc.bcm.edu	37	22	51159595	51159595	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	7	2	5	0	0
NISCH	11188	hgsc.bcm.edu	37	3	52492817	52492817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	7	7	0	0	0
STAB1	23166	bcgsc.ca	37	3	52556369	52556369	+	Silent	SNP	C	C	T	rs35325270	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	4	3	1	0	0
MYLK	4638	bcgsc.ca	37	3	123452838	123452838	+	Silent	SNP	G	G	A	rs4678047	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
VWA5B2	90113	hgsc.bcm.edu	37	3	183951125	183951125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	20	0	20	0	0
MUC4	4585	bcgsc.ca	37	3	195506147	195506147	+	Missense_Mutation	SNP	G	G	T	rs200473856	byfrequency;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195507237	195507237	+	Silent	SNP	G	G	A	rs199776180		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195508546	195508546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195511911	195511911	+	Silent	SNP	G	G	A	rs200732241		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195511959	195511959	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
CRIPAK	285464	ucsc.edu	37	4	1388848	1388848	+	Silent	SNP	A	A	C	rs74511366	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	59	10	0	49	0
CRIPAK	285464	ucsc.edu	37	4	1388850	1388850	+	Missense_Mutation	SNP	C	C	T	rs78729943	bycluster;byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	8	8	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	96	8	88	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
TBC1D1	23216	hgsc.bcm.edu	37	4	38138932	38138932	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	43	16	26	1	0
MANBA	4126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103644191	103644191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	4	0	4	0	0
CDH12	1010	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	21752043	21752043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90124769	90124769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
PCDHB3	56132	ucsc.edu	37	5	140482312	140482312	+	Silent	SNP	A	A	G	rs429364	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	24	20	4	0	0
ATXN1	6310	hgsc.bcm.edu	37	6	16327894	16327894	+	Missense_Mutation	SNP	C	C	A	rs201040133		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	5	5	0	0	0
ATXN1	6310	hgsc.bcm.edu	37	6	16327900	16327900	+	Missense_Mutation	SNP	C	C	A	rs200111316		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
HLA-G	3135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	29797691	29797691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
DDR1	780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30866949	30866949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	289	128	161	0	0
CYP21A2	1589	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32006983	32006983	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	1524	832	692	0	0
TNXB	7148	broad.mit.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
DNAH8	1769	bcgsc.ca	37	6	38800209	38800209	+	Silent	SNP	T	T	C	rs1678729	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
TMEM151B	441151	hgsc.bcm.edu	37	6	44243154	44243154	+	Silent	SNP	C	C	T	rs12194552	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968127	106968127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	1	1	0	0	0
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968157	106968157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	1	1	0	0	0
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968170	106968170	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	1	1	0	0	0
AIM1	202	hgsc.bcm.edu;bcgsc.ca	37	6	106968184	106968184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
AIM1	202	hgsc.bcm.edu;bcgsc.ca	37	6	106968204	106968204	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968252	106968252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	2	2	0	0	0
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968291	106968291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	1	1	0	0	0
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968355	106968355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106978066	106978066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
TRAF3IP2	10758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111912951	111912951	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	13	9	4	0	0
TCP10	6953	bcgsc.ca	37	6	167789493	167789493	+	Missense_Mutation	SNP	T	T	C	rs3010590	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MICALL2	79778	hgsc.bcm.edu	37	7	1484572	1484572	+	Silent	SNP	A	A	G	rs10435184		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	6	0	6	0	0
RADIL	55698	hgsc.bcm.edu	37	7	4874729	4874729	+	Missense_Mutation	SNP	C	C	G	rs144507770		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	1	0	1	0	0
RADIL	55698	hgsc.bcm.edu	37	7	4876100	4876100	+	Silent	SNP	G	G	A	rs138811640		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	2	2	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193464	6193464	+	Missense_Mutation	SNP	T	T	G	rs61732616	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	8	4	4	0	0
CRCP	27297	hgsc.bcm.edu	37	7	65579838	65579838	+	Missense_Mutation	SNP	A	A	G	rs17138089	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	1	0	1	0	0
REPIN1	29803	hgsc.bcm.edu	37	7	150069548	150069548	+	Silent	SNP	C	C	G	rs187957325	by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	39	21	18	0	0
CRYGN	155051	hgsc.bcm.edu	37	7	151136989	151136989	+	Silent	SNP	C	C	T	rs116501631	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125109589	125109589	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
TOP1MT	116447	ucsc.edu;bcgsc.ca	37	8	144411548	144411548	+	Missense_Mutation	SNP	C	C	T	rs147714048	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	16	8	8	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144992385	144992385	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	35	20	15	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	2	0	2	0	0
CCDC171	203238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	15724809	15724809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	22	0	22	0	0
ALG2	85365	hgsc.bcm.edu	37	9	101984048	101984048	+	Silent	SNP	G	G	C	rs35055733	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	39	14	25	0	0
PPAPDC3	84814	hgsc.bcm.edu	37	9	134183371	134183371	+	Silent	SNP	G	G	A	rs61731644	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	10	0	10	0	0
KIAA1984	84960	hgsc.bcm.edu	37	9	139694613	139694613	+	Missense_Mutation	SNP	C	C	A	rs35342663	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
CYTB	0	broad.mit.edu	37	MT	15191	15191	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	7089	6453	635	0	1
ARSE	415	bcgsc.ca	37	X	2856155	2856155	+	Missense_Mutation	SNP	C	C	T	rs35143646	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53430781	53430781	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	45	19	25	1	0
BEX2	84707	ucsc.edu;bcgsc.ca	37	X	102564587	102564587	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
CT47B1	643311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	120009056	120009056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
MIR205HG	642587	hgsc.bcm.edu	37	1	209605636	209605637	+	In_Frame_Ins	INS	-	-	AGC	rs3842530	bycluster;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
LPHN1	22859	broad.mit.edu	37	19	14272185	14272186	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
POU2F2	5452	broad.mit.edu	37	19	42596242	42596243	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
C21orf58	54058	broad.mit.edu	37	21	47721985	47721986	+	In_Frame_Ins	INS	-	-	TGG	rs71318063	bycluster;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
VWA5B2	90113	hgsc.bcm.edu	37	3	183959652	183959653	+	In_Frame_Ins	INS	-	-	GAGTGGGAACTGACAGCG	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
RADIL	55698	broad.mit.edu	37	7	4843213	4843214	+	In_Frame_Ins	INS	-	-	CTGCCAGGG	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
LURAP1L	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	-	GGCGGC	rs139315731	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
PRAMEF1	65121	bcgsc.ca	37	1	12855598	12855599	+	Missense_Mutation	DNP	AC	AC	TG	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
PRAMEF2	65122	bcgsc.ca	37	1	12921087	12921088	+	Missense_Mutation	DNP	AC	AC	TG	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	106968247	106968248	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	0	0	0	0	0
