Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PER3	8863	ucsc.edu	37	1	7890053	7890053	+	Missense_Mutation	SNP	G	G	A	rs1776342	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	9	9	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
FOXD2	2306	hgsc.bcm.edu	37	1	47904909	47904909	+	Missense_Mutation	SNP	G	G	C	rs2405913		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
RBM15	64783	broad.mit.edu	37	1	110882038	110882038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	197404443	197404443	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
BPNT1	10380	ucsc.edu	37	1	220231263	220231263	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	3429	3284	77	58	10
LEFTY1	10637	hgsc.bcm.edu	37	1	226075608	226075608	+	Silent	SNP	G	G	A	rs12753531	byfrequency;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
LGALS8	3964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236700878	236700878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	0	1	0	0
IDI1	3422	hgsc.bcm.edu	37	10	1094906	1094906	+	Missense_Mutation	SNP	C	C	T	rs7091756	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	4	4	0	0	0
PITRM1	10531	bcgsc.ca	37	10	3180227	3180227	+	Missense_Mutation	SNP	T	T	C	rs6901	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	75	75	0	0	0
PTPLA	9200	hgsc.bcm.edu	37	10	17659265	17659265	+	Missense_Mutation	SNP	G	G	C	rs118189437	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
PPYR1	5540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	47087602	47087602	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
KIAA1279	26128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70748621	70748621	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	5	4	1	0	0
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89474830	89474831	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
HECTD2	143279	hgsc.bcm.edu	37	10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	rs7081569	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	0	1	0	0
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105779553	105779553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	33	28	5	0	0
SMC3	9126	bcgsc.ca	37	10	112363001	112363001	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	63	63	0	0	0
PNPLA2	57104	hgsc.bcm.edu	37	11	824789	824789	+	Missense_Mutation	SNP	T	T	C	rs1138693		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	228	0	228	0	0
OR52E6	390078	bcgsc.ca	37	11	5862845	5862845	+	Missense_Mutation	SNP	A	A	G	rs4592451	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CREB3L1	90993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46321507	46321507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
TMEM132A	54972	hgsc.bcm.edu	37	11	60701987	60701987	+	Silent	SNP	G	G	A	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	27	16	11	0	0
SAC3D1	29901	hgsc.bcm.edu	37	11	64809044	64809044	+	Missense_Mutation	SNP	C	C	T	rs3741390	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
SAC3D1	29901	hgsc.bcm.edu	37	11	64809090	64809090	+	Missense_Mutation	SNP	T	T	G	rs12271134		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	3	0	3	0	0
SAC3D1	29901	hgsc.bcm.edu	37	11	64809133	64809133	+	Silent	SNP	T	T	G	rs10792455		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	3	0	3	0	0
SIPA1	6494	hgsc.bcm.edu	37	11	65415028	65415028	+	Silent	SNP	T	T	G	rs4930157		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	5	0	5	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751543	76751604	+	In_Frame_Del	DEL	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751585	76751604	+	In_Frame_Del	DEL	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
LOC100652768	0	ucsc.edu;bcgsc.ca	37	11	117066657	117066657	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	1	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	557	363	192	0	2
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
TMCC3	57458	bcgsc.ca	37	12	94972290	94972290	+	Silent	SNP	C	C	T	rs2270893	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	3	3	0	0	0
NTN4	59277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	96104338	96104338	+	Missense_Mutation	SNP	C	C	T	rs148021049	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	19	13	6	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
OAS3	4940	bcgsc.ca	37	12	113386779	113386779	+	Missense_Mutation	SNP	C	C	G	rs2285933	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	5	5	0	0	0
DNAH10	196385	broad.mit.edu	37	12	124362430	124362430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26436472	26436472	+	Missense_Mutation	SNP	A	A	G	rs138600634	alternate_allele	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
PDX1	3651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	28494294	28494294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
DLEU7	220107	hgsc.bcm.edu	37	13	51417535	51417535	+	Missense_Mutation	SNP	G	G	A	rs898861		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
PCDH8	5100	hgsc.bcm.edu	37	13	53421432	53421432	+	Silent	SNP	C	C	A	rs3742300	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	11	11	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	5	0	5	0	0
ASB2	51676	broad.mit.edu	37	14	94405527	94405527	+	Missense_Mutation	SNP	T	T	G	rs199833352		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	1	0	0	0
PLCB2	5330	hgsc.bcm.edu	37	15	40583560	40583560	+	Silent	SNP	G	G	T	rs62021888		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CELF6	60677	hgsc.bcm.edu	37	15	72612195	72612195	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
AP3B2	8120	hgsc.bcm.edu	37	15	83378366	83378366	+	Silent	SNP	G	G	A	rs200226421		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	0	1	0	0
TICRR	90381	bcgsc.ca	37	15	90168693	90168693	+	Missense_Mutation	SNP	T	T	A	rs1866928	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	1	0	0	0
DNM1P46	196968	ucsc.edu	37	15	100332799	100332799	+	RNA	SNP	A	A	C	rs11639102		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
MYH11	4629	broad.mit.edu	37	16	15832515	15832515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
SPNS1	83985	broad.mit.edu	37	16	28992923	28992923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu	37	17	4046101	4046101	+	Missense_Mutation	SNP	A	A	G	rs1454121		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7579716	7579716	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
RNF222	643904	hgsc.bcm.edu	37	17	8296383	8296383	+	Missense_Mutation	SNP	C	C	T	rs12601362	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CDRT4	284040	bcgsc.ca	37	17	15341183	15341183	+	Missense_Mutation	SNP	A	A	C	rs2954759	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	3	3	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21906677	21906677	+	RNA	SNP	C	C	A	rs12449661	bycluster;byfrequency;byhapmap	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
POLDIP2	26073	bcgsc.ca	37	17	26676135	26676135	+	RNA	SNP	C	C	T	rs13469	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	67	67	0	0	0
MED24	9862	broad.mit.edu	37	17	38189409	38189409	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	4	4	0	0	0
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240791	39240791	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
KRTAP4-7	100132476	hgsc.bcm.edu;ucsc.edu	37	17	39240796	39240796	+	Missense_Mutation	SNP	G	G	C	rs199957151		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
PTPN2	5771	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	12830976	12830976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	7	6	1	0	0
MEX3C	51320	hgsc.bcm.edu	37	18	48723146	48723154	+	In_Frame_Del	DEL	GCCGCCGCG	GCCGCCGCG	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	GCCGCCGCG	GCCGCCGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
LPPR3	0	hgsc.bcm.edu	37	19	813220	813220	+	Missense_Mutation	SNP	T	T	C	rs351994		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	5	3	2	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	1	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	4	4	0	0	0
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	2191208	2191208	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	7	1	6	0	0
NOTCH3	4854	bcgsc.ca	37	19	15303225	15303225	+	Silent	SNP	G	G	A	rs3815188	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CILP2	148113	hgsc.bcm.edu	37	19	19651140	19651140	+	Silent	SNP	A	A	G	rs4808970	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
RYR1	6261	broad.mit.edu	37	19	39062721	39062721	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
BLOC1S3	388552	hgsc.bcm.edu	37	19	45682824	45682824	+	Silent	SNP	G	G	A	rs758506		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205288	48205288	+	Silent	SNP	G	G	A	rs8100472		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	1	0	0	0
PNKP	11284	broad.mit.edu	37	19	50368482	50368482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	82	80	2	0	0
LRRC4B	94030	hgsc.bcm.edu	37	19	51021057	51021057	+	Missense_Mutation	SNP	A	A	G	rs61751957		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CTU1	90353	hgsc.bcm.edu	37	19	51602298	51602298	+	Missense_Mutation	SNP	C	C	G	rs12983578		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	1	0	0	0
ZNF761	388561	bcgsc.ca	37	19	53959568	53959568	+	Missense_Mutation	SNP	G	G	C	rs76363078		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	3	3	0	0	0
CNOT3	4849	broad.mit.edu	37	19	54649663	54649663	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
SIX3	6496	hgsc.bcm.edu	37	2	45171842	45171842	+	Silent	SNP	A	A	G	rs62840660	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
EPCAM	4072	bcgsc.ca	37	2	47601106	47601106	+	Missense_Mutation	SNP	T	T	C	rs1126497	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	14	14	0	0	0
TEKT4	150483	ucsc.edu	37	2	95542476	95542476	+	Missense_Mutation	SNP	C	C	T	rs1052809	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	10	0	10	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682226	106682226	+	Silent	SNP	T	T	C	rs4271786		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
C1QL2	165257	hgsc.bcm.edu	37	2	119915509	119915509	+	Silent	SNP	G	G	T	rs1317848	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
LOC100131320	0	broad.mit.edu	37	2	130726529	130726529	+	RNA	DEL	A	A	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
KCNJ3	3760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	155555818	155555818	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
SCN7A	6332	broad.mit.edu	37	2	167327196	167327196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	CGG	-	rs5839848	alternate_allele	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	CGG	CGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29633887	29633887	+	RNA	SNP	G	G	A	rs2313264	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	2	1	1	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	3	1	2	0	0
SLC13A3	64849	bcgsc.ca	37	20	45242269	45242269	+	Silent	SNP	G	G	C	rs2273024	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	5	0	5	0	0
RPS21	6227	ucsc.edu	37	20	60962972	60962972	+	Splice_Site	SNP	T	T	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	6	5	1	0	0
TEKT4P2	100132288	bcgsc.ca	37	21	9910006	9910006	+	RNA	SNP	A	A	G	rs190975166	by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
TEKT4P2	100132288	bcgsc.ca	37	21	9910072	9910072	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
KRTAP11-1	337880	bcgsc.ca	37	21	32253629	32253629	+	Missense_Mutation	SNP	C	C	T	rs71321355	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu;ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	18	18	0	0	0
TEF	7008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41791922	41791922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	8	8	0	0	0
LINC00620	285375	broad.mit.edu	37	3	13699176	13699176	+	RNA	DEL	G	G	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CTNNB1	1499	ucsc.edu;bcgsc.ca	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	127	71	56	0	0
MUC4	4585	bcgsc.ca	37	3	195506459	195506459	+	Missense_Mutation	SNP	C	C	T	rs199910419		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195506462	195506462	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
IDUA	3425	hgsc.bcm.edu	37	4	980971	980971	+	Missense_Mutation	SNP	T	T	G	rs10794537		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	7	4	3	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388819	1388819	+	Missense_Mutation	SNP	T	T	C	rs144797159	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	24	24	0	0	0
SOD3	6649	hgsc.bcm.edu	37	4	24801354	24801354	+	Silent	SNP	C	C	T	rs8192291	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	2	0	2	0	0
TMEM165	55858	hgsc.bcm.edu	37	4	56262374	56262374	+	Silent	SNP	A	A	G	rs1128141		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	4	0	4	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662248	77662248	+	Silent	SNP	G	G	A	rs60216375	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88536457	88536457	+	Silent	SNP	T	T	C	rs142031576		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
DSPP	1834	mdanderson.org	37	4	88536460	88536460	+	Silent	SNP	C	C	T	rs199691318		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	475724	475724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ISL1	3670	hgsc.bcm.edu;broad.mit.edu	37	5	50685485	50685485	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	112103039	112103039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	1	0	0	0
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	170632528	170632528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
BTNL9	153579	hgsc.bcm.edu	37	5	180486404	180486404	+	Missense_Mutation	SNP	C	C	T	rs186444058		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	2	0	2	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	2	0	2	0	0
TMEM63B	55362	bcgsc.ca	37	6	44115169	44115169	+	Missense_Mutation	SNP	G	G	A	rs4714759	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	9	9	0	0	0
FAM46A	55603	hgsc.bcm.edu	37	6	82461742	82461742	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	1	0	0	0
TPBG	7162	hgsc.bcm.edu	37	6	83074937	83074937	+	Missense_Mutation	SNP	A	A	G	rs144253219	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	1	0	0	0
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	83830485	83830485	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ZC3H12D	340152	hgsc.bcm.edu	37	6	149772190	149772190	+	Missense_Mutation	SNP	G	G	A	rs112722576		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CCT6P3	643180	broad.mit.edu	37	7	64527327	64527327	+	RNA	SNP	T	T	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ABHD11	83451	bcgsc.ca	37	7	73151644	73151644	+	Silent	SNP	A	A	G	rs6460052	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	2	2	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
KLRG2	346689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139164980	139164980	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CLCN1	1180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143042815	143042815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ZNF282	8427	hgsc.bcm.edu	37	7	148921732	148921732	+	Missense_Mutation	SNP	G	G	A	rs11547158	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	5	2	3	0	0
PDE7A	5150	ucsc.edu;bcgsc.ca	37	8	66692007	66692007	+	Silent	SNP	A	A	G	rs200299656		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	1	0	0	0
MATN2	4147	bcgsc.ca	37	8	98943545	98943545	+	Silent	SNP	A	A	G	rs2290471	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	1	0	0	0
VPS13B	157680	broad.mit.edu	37	8	100133706	100133706	+	Nonsense_Mutation	SNP	T	T	G	rs7460625	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	0	1	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	35	0	35	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	3	2	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	1	1	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	3	1	2	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
FAM205A	259308	bcgsc.ca	37	9	34725047	34725047	+	Silent	SNP	C	C	T	rs78716275		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
LOC286238	0	bcgsc.ca	37	9	91262494	91262494	+	Missense_Mutation	SNP	G	G	T	rs72751474	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
REXO4	57109	broad.mit.edu;bcgsc.ca	37	9	136272149	136272151	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
C9orf172	389813	hgsc.bcm.edu	37	9	139741088	139741089	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	GT	GT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CACNA1B	774	hgsc.bcm.edu	37	9	140917779	140917779	+	Missense_Mutation	SNP	G	G	T	rs7873074	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
HDHD1	8226	bcgsc.ca	37	X	6995315	6995315	+	Silent	SNP	C	C	T	rs2379206	byfrequency	TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	8	8	0	0	0
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	50345785	50345785	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ARHGAP36	158763	hgsc.bcm.edu	37	X	130192420	130192420	+	Splice_Site	SNP	T	T	A	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
PCGF6	84108	hgsc.bcm.edu	37	10	105110740	105110741	+	In_Frame_Ins	INS	-	-	GGAGGC	rs113359610		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
BRCA2	675	bcgsc.ca	37	13	32910689	32910690	+	In_Frame_Ins	INS	-	-	TCTTCTTCT	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64527577	64527578	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
MAP3K4	4216	hgsc.bcm.edu	37	6	161413044	161413045	+	In_Frame_Ins	INS	-	-	CCG	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-OR-A5LE-01A-11D-A29I-10	TCGA-OR-A5LE-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	afd8534e-0954-4b91-87c9-66146aa7b4d9	30ce8765-3a46-4a9d-8f9a-4165b14d73f3	0	0	0	0	0
