Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	isArtifactMode	oxoGCut	pox	pox_cutoff	qox	t_alt_count	t_ref_count	validation_alt_allele	validation_by_all_platform	validation_method	validation_tumor_sample
CCDC27	148870	broad.mit.edu	37	1	3669321	3669321	+	Silent	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:3669321C>G	uc001akv.2	+	1	357	c.276C>G	c.(274-276)CTC>CTG	p.L92L		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	92										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		CACGCACGCTCAGCAAGTCGG	0.637		NaN											0	0	0	0.002836	0	31	23				
KIAA0090	23065	broad.mit.edu	37	1	19549914	19549914	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:19549914G>A	uc001bbo.2	-	19	2395	c.2352C>T	c.(2350-2352)ATC>ATT	p.I784I	KIAA0090_uc001bbn.2_5'Flank|KIAA0090_uc001bbp.2_Silent_p.I783I|KIAA0090_uc001bbq.2_Silent_p.I783I|KIAA0090_uc001bbr.2_Silent_p.I762I	NM_015047	NP_055862	Q8N766	K0090_HUMAN	hypothetical protein LOC23065 precursor	784	DUF1620.|Extracellular (Potential).					integral to membrane	protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|Breast(348;0.00366)|all_lung(284;0.00519)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;3.84e-05)|Kidney(64;0.000191)|KIRC - Kidney renal clear cell carcinoma(64;0.00274)|GBM - Glioblastoma multiforme(114;0.005)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0656)		CTGAATGCACGATATGGACAG	0.537		NaN											0	0	0	0.00361	0	86	163				
PTP4A2	8073	broad.mit.edu	37	1	32384631	32384631	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:32384631C>G	uc001bty.1	-	2	1030	c.36G>C	c.(34-36)GAG>GAC	p.E12D	PTP4A2_uc010ogs.1_Missense_Mutation_p.E12D|PTP4A2_uc001btz.1_Missense_Mutation_p.E12D	NM_080391	NP_536316	Q12974	TP4A2_HUMAN	protein tyrosine phosphatase type IVA, member 2	12						early endosome|plasma membrane	prenylated protein tyrosine phosphatase activity|protein binding|protein tyrosine/serine/threonine phosphatase activity				0		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)				AACGCATGTTCTCATAGGAGA	0.413		NaN											0	0	0	0.003271	0	34	42				
MACF1	23499	broad.mit.edu	37	1	39550081	39550081	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:39550081C>T	uc010ois.1	+	3	396	c.191C>T	c.(190-192)CCT>CTT	p.P64L	MACF1_uc010oir.1_Silent_p.L60L	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	64	Actin-binding.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GTGCTGGACCCTGCAGAGCGT	0.632		NaN											0	0	0	0.008871	0	19	20				
SSBP3	23648	broad.mit.edu	37	1	54867580	54867580	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:54867580C>G	uc001cxe.2	-	4	528	c.230G>C	c.(229-231)AGA>ACA	p.R77T	SSBP3_uc001cxf.2_Missense_Mutation_p.R77T|SSBP3_uc001cxg.2_Missense_Mutation_p.R77T	NM_145716	NP_663768	Q9BWW4	SSBP3_HUMAN	single stranded DNA binding protein 3 isoform a	77					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	single-stranded DNA binding				0						ACAAGTGTCTCTCCTTTCAGG	0.368		NaN											0	0	0	0.00361	0	42	57				
ABCD3	5825	broad.mit.edu	37	1	94964399	94964399	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:94964399C>G	uc001dqn.3	+	18	1627	c.1525C>G	c.(1525-1527)CCT>GCT	p.P509A	ABCD3_uc010oto.1_Missense_Mutation_p.P533A|ABCD3_uc010otp.1_Missense_Mutation_p.P436A|ABCD3_uc009wdr.2_Missense_Mutation_p.P399A|ABCD3_uc001dqo.3_Missense_Mutation_p.P197A	NM_002858	NP_002849	P28288	ABCD3_HUMAN	ATP-binding cassette, sub-family D, member 3	509	ABC transporter.				peroxisomal long-chain fatty acid import|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(1)	1		all_lung(203;0.000434)|Lung NSC(277;0.0019)		all cancers(265;0.0261)|Epithelial(280;0.165)		ATTTTATGTTCCTCAGGTAAG	0.318		NaN											0	0	0	0.00623	0	38	42				
AGL	178	broad.mit.edu	37	1	100366410	100366410	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:100366410G>A	uc001dsi.1	+	26	3981	c.3581G>A	c.(3580-3582)GGC>GAC	p.G1194D	AGL_uc001dsj.1_Missense_Mutation_p.G1194D|AGL_uc001dsk.1_Missense_Mutation_p.G1194D|AGL_uc001dsl.1_Missense_Mutation_p.G1194D|AGL_uc001dsm.1_Missense_Mutation_p.G1178D|AGL_uc001dsn.1_Missense_Mutation_p.G1177D	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1194	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		TTGCCTGCTGGCACACTGGTA	0.318		NaN											0	0	0	0.000248	0	4	144				
ANP32E	81611	broad.mit.edu	37	1	150198965	150198965	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:150198965G>A	uc001etw.2	-	5	1026	c.656C>T	c.(655-657)TCA>TTA	p.S219L	ANP32E_uc010pbt.1_RNA|ANP32E_uc010pbu.1_Missense_Mutation_p.S171L|ANP32E_uc010pbv.1_Missense_Mutation_p.S178L|ANP32E_uc001etv.3_Missense_Mutation_p.S219L|ANP32E_uc010pbw.1_Missense_Mutation_p.H164Y	NM_030920	NP_112182	Q9BTT0	AN32E_HUMAN	acidic (leucine-rich) nuclear phosphoprotein 32	219	Asp/Glu-rich (highly acidic).					cytoplasmic membrane-bounded vesicle|nucleus	phosphatase inhibitor activity				0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			CATTAAGTATGAGAGGCCCAC	0.274		NaN											0	0	0	0.00361	0	43	52				
CRTC2	200186	broad.mit.edu	37	1	153921728	153921728	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:153921728G>C	uc010ped.1	-	12	1607	c.1537C>G	c.(1537-1539)CAG>GAG	p.Q513E	DENND4B_uc001fdd.1_5'Flank|CRTC2_uc001fde.3_RNA|CRTC2_uc001fdf.3_Missense_Mutation_p.Q49E	NM_181715	NP_859066	Q53ET0	CRTC2_HUMAN	CREB regulated transcription coactivator 2	513					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)	2	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GAACAAGACTGAGAGGGCAGC	0.617		NaN											0	0	0	0.002522	0	45	45				
YY1AP1	55249	broad.mit.edu	37	1	155629952	155629952	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:155629952C>G	uc001fln.2	-	11	1911	c.1887G>C	c.(1885-1887)CAG>CAC	p.Q629H	YY1AP1_uc001flg.2_Missense_Mutation_p.Q368H|YY1AP1_uc010pgg.1_Missense_Mutation_p.Q468H|YY1AP1_uc010pgh.1_Missense_Mutation_p.Q572H|YY1AP1_uc010pgi.1_Missense_Mutation_p.Q721H|YY1AP1_uc001flh.2_Missense_Mutation_p.Q701H|YY1AP1_uc009wqt.2_Missense_Mutation_p.Q552H|YY1AP1_uc001flk.2_Missense_Mutation_p.Q572H|YY1AP1_uc001fll.2_Missense_Mutation_p.Q583H|YY1AP1_uc009wqv.2_Missense_Mutation_p.Q300H|YY1AP1_uc001flm.2_Missense_Mutation_p.Q572H|YY1AP1_uc001fli.2_Missense_Mutation_p.Q583H|YY1AP1_uc009wqu.2_Missense_Mutation_p.Q416H|YY1AP1_uc001flj.2_Missense_Mutation_p.Q563H|YY1AP1_uc009wqw.2_Missense_Mutation_p.Q552H|YY1AP1_uc001flo.2_Missense_Mutation_p.Q517H|YY1AP1_uc001flp.2_Missense_Mutation_p.Q583H	NM_139118	NP_620829	Q9H869	YYAP1_HUMAN	YY1-associated protein isoform 2	629					regulation of cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					TCTGGGGACTCTGGGCCACAG	0.542		NaN											0	0	0	0.00361	0	48	44				
HMCN1	83872	broad.mit.edu	37	1	186034488	186034488	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:186034488C>T	uc001grq.1	+	49	7861	c.7632C>T	c.(7630-7632)CAC>CAT	p.H2544H		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2544	Ig-like C2-type 23.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AGGTGCCACACACTGGAAGAT	0.458		NaN											0	0	0	0.000248	0	4	34				
HMCN1	83872	broad.mit.edu	37	1	186062644	186062644	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:186062644G>C	uc001grq.1	+	66	10268	c.10039G>C	c.(10039-10041)GAT>CAT	p.D3347H		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3347	Ig-like C2-type 32.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GGGTAATAAAGATGAAGCAGA	0.383		NaN											0	0	0	0.00361	0	62	62				
CR2	1380	broad.mit.edu	37	1	207647168	207647168	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:207647168G>C	uc001hfw.2	+	11	2095	c.2001G>C	c.(1999-2001)CAG>CAC	p.Q667H	CR2_uc001hfv.2_Missense_Mutation_p.Q726H|CR2_uc009xch.2_Missense_Mutation_p.Q667H	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	667	Sushi 11.|Extracellular (Potential).			Q -> D (in Ref. 10; AA sequence).	complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						ATGTGAGACAGAGTCTTCAAG	0.418		NaN											0	0	0	0.00361	0	66	71				
CD34	947	broad.mit.edu	37	1	208061201	208061201	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:208061201G>A	uc001hgw.1	-	8	1298	c.1040C>T	c.(1039-1041)CCT>CTT	p.P347L	CD34_uc001hgv.1_Missense_Mutation_p.P189L|CD34_uc001hgx.1_3'UTR|CD34_uc010psj.1_Missense_Mutation_p.P212L	NM_001025109	NP_001020280	P28906	CD34_HUMAN	CD34 antigen isoform a	347	Cytoplasmic (Potential).				cell-cell adhesion|leukocyte migration|regulation of immune response	integral to membrane	carbohydrate binding			ovary(1)	1						CTGAGCCTCAGGGGAGGTCCC	0.557		NaN											0	0	0	0.001786	0	32	26				
CENPF	1063	broad.mit.edu	37	1	214826232	214826232	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:214826232C>T	uc001hkm.2	+	16	8396	c.8222C>T	c.(8221-8223)TCA>TTA	p.S2741L		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	2837	Potential.|Sufficient for self-association.|Sufficient for centromere localization.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		TGTCTCAGTTCACAGAAGCTG	0.328		NaN											0	0	0	0.00623	0	40	39				
C1orf58	148362	broad.mit.edu	37	1	222902115	222902115	+	Missense_Mutation	SNP	A	A	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:222902115A>G	uc001hnq.1	+	9	1096	c.701A>G	c.(700-702)TAT>TGT	p.Y234C	C1orf58_uc010put.1_Missense_Mutation_p.Y202C|C1orf58_uc010puu.1_Missense_Mutation_p.Y234C|C1orf58_uc010puv.1_Missense_Mutation_p.Y202C|uc001hnr.1_RNA	NM_144695	NP_653296	Q5VW32	BROX_HUMAN	Bro1-domain-containing protein	234	BRO1.					membrane					0				GBM - Glioblastoma multiforme(131;0.0667)		GAGCCTGCATATTCTGCCAAA	0.318		NaN											0	0	0	0.00278	0	22	25				
MTR	4548	broad.mit.edu	37	1	237060354	237060354	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:237060354C>G	uc001hyi.3	+	32	4070	c.3647C>G	c.(3646-3648)TCA>TGA	p.S1216*	MTR_uc010pxw.1_Nonsense_Mutation_p.S809*|MTR_uc010pxx.1_Nonsense_Mutation_p.S1165*|MTR_uc010pxy.1_Nonsense_Mutation_p.S1070*	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	1216	AdoMet activation.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	TCAGCAGTCTCAGGCCTCTAC	0.403		NaN											0	0	0	0.00361	0	103	115				
RYR2	6262	broad.mit.edu	37	1	237949319	237949319	+	Silent	SNP	T	T	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:237949319T>A	uc001hyl.1	+	91	13431	c.13311T>A	c.(13309-13311)TCT>TCA	p.S4437S	RYR2_uc010pya.1_Silent_p.S852S	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4437	Potential.|Glu-rich (acidic).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			aaACCAAATCTGAACCTGAAA	0.338		NaN											0	0	0	0.006214	0	10	5				
HNRNPU	3192	broad.mit.edu	37	1	245018742	245018742	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:245018742C>G	uc001iaz.1	-	12	2554	c.2336G>C	c.(2335-2337)AGA>ACA	p.R779T	HNRNPU_uc001iaw.1_RNA|HNRNPU_uc001iax.1_RNA|HNRNPU_uc001iay.1_Missense_Mutation_p.R503T|HNRNPU_uc001iba.1_Missense_Mutation_p.R760T	NM_031844	NP_114032	Q00839	HNRPU_HUMAN	heterogeneous nuclear ribonucleoprotein U	779	Gly-rich.				CRD-mediated mRNA stabilization	catalytic step 2 spliceosome|cell surface|CRD-mediated mRNA stability complex|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	ATP binding|DNA binding|protein binding|RNA binding				0	all_cancers(71;6.97e-06)|all_epithelial(71;0.000104)|all_neural(11;0.0269)|Breast(184;0.0545)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0989)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.00868)			GTAGTTCCCTCTGTTGGGCAT	0.478		NaN											0	0	0	0.00361	0	99	163				
NLRP3	114548	broad.mit.edu	37	1	247607346	247607346	+	Silent	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr1:247607346C>G	uc001icr.2	+	9	2880	c.2742C>G	c.(2740-2742)CTC>CTG	p.L914L	NLRP3_uc001ics.2_Silent_p.L857L|NLRP3_uc001icu.2_Silent_p.L914L|NLRP3_uc001icw.2_Silent_p.L857L|NLRP3_uc001icv.2_Silent_p.L800L|NLRP3_uc010pyw.1_Silent_p.L892L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	914	LRR 7.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			ATCAGAATCTCACGCACCTTT	0.517		NaN											0	0	0	0.003271	0	34	31				
MSRB2	22921	broad.mit.edu	37	10	23399191	23399191	+	Silent	SNP	G	G	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr10:23399191G>T	uc001iro.2	+	3	351	c.240G>T	c.(238-240)CTG>CTT	p.L80L		NM_012228	NP_036360	Q9Y3D2	MSRB2_HUMAN	methionine sulfoxide reductase B2 precursor	80					protein repair	mitochondrion	peptide-methionine-(S)-S-oxide reductase activity|protein-methionine-R-oxide reductase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0					L-Methionine(DB00134)	GGATCTACCTGAATAACAAGG	0.428		NaN											1	0	2.4624e-09	0.008871	2.8746e-09	20	22				
GAD2	2572	broad.mit.edu	37	10	26559631	26559631	+	Silent	SNP	C	C	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr10:26559631C>A	uc001isp.2	+	10	1541	c.1038C>A	c.(1036-1038)CCC>CCA	p.P346P	GAD2_uc001isq.2_Silent_p.P346P	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	346					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	CATTTGACCCCCTCTTAGCTG	0.488		NaN											1	0	2.65773e-34	0.00361	3.20136e-34	80	69				
KIF5B	3799	broad.mit.edu	37	10	32311875	32311875	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr10:32311875C>T	uc001iwe.3	-	16	2285	c.1815G>A	c.(1813-1815)GTG>GTA	p.V605V		NM_004521	NP_004512	P33176	KINH_HUMAN	kinesin family member 5B	605					stress granule disassembly|vesicle transport along microtubule	kinesin complex|microtubule|perinuclear region of cytoplasm|vesicle	ATP binding|microtubule binding|microtubule motor activity		KIF5B/ALK(4)	lung(4)|ovary(1)	5		Prostate(175;0.0137)				TGCAACGTTTCACCATGGTTT	0.403		NaN											0	0	0	0.001523	0	22	31				
RTKN2	219790	broad.mit.edu	37	10	63978015	63978015	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr10:63978015C>G	uc001jlw.2	-	8	924	c.827G>C	c.(826-828)CGA>CCA	p.R276P	RTKN2_uc009xpf.1_Missense_Mutation_p.R57P	NM_145307	NP_660350	Q8IZC4	RTKN2_HUMAN	rhotekin 2	276					signal transduction	intracellular					0	Prostate(12;0.0297)|all_hematologic(501;0.215)					GGCAACTAGTCGGCAGCACAT	0.368		NaN											0	0	0	0.002852	0	41	50				
UNC5B	219699	broad.mit.edu	37	10	73053303	73053303	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr10:73053303G>C	uc001jro.2	+	12	2359	c.1914G>C	c.(1912-1914)AAG>AAC	p.K638N	UNC5B_uc001jrp.2_Missense_Mutation_p.K627N	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	638	Cytoplasmic (Potential).|ZU5.				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						TTCAGCTCAAGACCCAGGCCC	0.637		NaN											0	0	0	0.003271	0	32	48				
CDHR1	92211	broad.mit.edu	37	10	85973981	85973981	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr10:85973981G>C	uc001kcv.2	+	17	2184	c.2184G>C	c.(2182-2184)AAG>AAC	p.K728N	CDHR1_uc001kcw.2_Intron|CDHR1_uc009xst.2_Missense_Mutation_p.K432N|CDHR1_uc001kcx.2_Missense_Mutation_p.K42N	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	728	Cytoplasmic (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						GGCGCAACAAGAAGTCTAACA	0.642		NaN											0	0	0	0.00361	0	42	35				
NOC3L	64318	broad.mit.edu	37	10	96106204	96106204	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr10:96106204G>C	uc001kjq.1	-	11	1455	c.1367C>G	c.(1366-1368)TCT>TGT	p.S456C	NOC3L_uc009xuk.1_Missense_Mutation_p.S241C	NM_022451	NP_071896	Q8WTT2	NOC3L_HUMAN	nucleolar complex associated 3 homolog	456	Potential.					nuclear speck|nucleolus	binding			ovary(1)	1		Colorectal(252;0.0897)				TCTTGATAGAGATTTTCTCTT	0.269		NaN											0	0	0	0.007413	0	18	41				
CRTAC1	55118	broad.mit.edu	37	10	99664461	99664461	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr10:99664461G>C	uc001kou.1	-	7	1317	c.961C>G	c.(961-963)CTG>GTG	p.L321V	CRTAC1_uc001kov.2_Missense_Mutation_p.L310V|CRTAC1_uc001kot.1_Missense_Mutation_p.L111V	NM_018058	NP_060528	Q9NQ79	CRAC1_HUMAN	cartilage acidic protein 1 precursor	321	FG-GAP 3; atypical.					proteinaceous extracellular matrix	calcium ion binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.24)		Epithelial(162;2.18e-10)|all cancers(201;3.27e-09)		CTCATTTGCAGATAGAGGCGG	0.473		NaN											0	0	0	0.00361	0	52	78				
PPRC1	23082	broad.mit.edu	37	10	103897653	103897653	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr10:103897653C>T	uc001kum.2	+	2	239	c.200C>T	c.(199-201)TCT>TTT	p.S67F	PPRC1_uc001kun.2_5'UTR|PPRC1_uc010qqj.1_Missense_Mutation_p.S67F|PPRC1_uc009xxa.2_5'Flank	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	67					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		GTCAGTCTCTCTCGGCTGGGC	0.562		NaN											0	0	0	0.001523	0	21	26				
PSD	5662	broad.mit.edu	37	10	104173719	104173719	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr10:104173719C>T	uc001kvg.1	-	5	1887	c.1360G>A	c.(1360-1362)GAC>AAC	p.D454N	PSD_uc001kvh.1_Missense_Mutation_p.D75N|PSD_uc009xxd.1_Missense_Mutation_p.D454N	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	454	Pro-rich.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GCTGGTGGGTCGGGCCGGGGT	0.662		NaN											0	0	0	0.00361	0	47	32				
SIGIRR	59307	broad.mit.edu	37	11	407866	407866	+	Silent	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr11:407866G>C	uc001lpd.2	-	5	762	c.432C>G	c.(430-432)CTC>CTG	p.L144L	SIGIRR_uc001lpf.2_Silent_p.L144L|SIGIRR_uc001lpe.1_Silent_p.L144L|SIGIRR_uc001lpg.2_Silent_p.L144L	NM_001135054	NP_001128526	Q6IA17	SIGIR_HUMAN	single Ig IL-1R-related molecule	144	Cytoplasmic (Potential).				acute-phase response|innate immune response|negative regulation of chemokine biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of lipopolysaccharide-mediated signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity	integral to membrane	protein binding|transmembrane receptor activity				0		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCAGCACGTTGAGACGGCACT	0.687		NaN											0	0	0	0.00361	0	55	3				
OR8J3	81168	broad.mit.edu	37	11	55905037	55905037	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr11:55905037G>C	uc010riz.1	-	1	158	c.158C>G	c.(157-159)TCT>TGT	p.S53C		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					TTGAAGTCGAGAGTCAACACT	0.473		NaN											0	0	0	0.00361	0	94	96				
SLC36A4	120103	broad.mit.edu	37	11	92916047	92916047	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr11:92916047C>G	uc001pdn.2	-	4	381	c.284G>C	c.(283-285)AGC>ACC	p.S95T	SLC36A4_uc001pdm.2_5'UTR	NM_152313	NP_689526	Q6YBV0	S36A4_HUMAN	solute carrier family 36 (proton/amino acid	95	Helical; (Potential).				L-alanine transport|proline transport|tryptophan transport	integral to membrane	symporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				AAACACAAGGCTGATTGGTCC	0.328		NaN											0	0	0	0.00361	0	51	57				
EI24	9538	broad.mit.edu	37	11	125448904	125448904	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr11:125448904C>T	uc001qca.2	+	7	743	c.501C>T	c.(499-501)GTC>GTT	p.V167V	EI24_uc001qcb.2_Silent_p.V167V|EI24_uc010sbd.1_RNA|EI24_uc009zbl.2_Silent_p.V167V|EI24_uc001qcc.2_RNA|EI24_uc010sbe.1_Silent_p.V153V|EI24_uc010sbf.1_RNA	NM_004879	NP_004870	O14681	EI24_HUMAN	etoposide induced 2.4 isoform 1	167					apoptosis|autophagy|induction of apoptosis|negative regulation of cell growth	endoplasmic reticulum membrane|integral to membrane|nuclear membrane				ovary(1)	1	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.64e-07)|OV - Ovarian serous cystadenocarcinoma(99;0.0975)		TCCCTAGTGTCAGCAAAATAA	0.443		NaN											0	0	0	0.00308	0	5	1				
KCNJ5	3762	broad.mit.edu	37	11	128782060	128782060	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr11:128782060G>C	uc001qet.2	+	2	1206	c.892G>C	c.(892-894)GAG>CAG	p.E298Q	KCNJ5_uc009zck.2_Missense_Mutation_p.E298Q|KCNJ5_uc001qew.2_Missense_Mutation_p.E298Q	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	298	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	GCATCAGGAAGAGTTTGAAGT	0.527		NaN											0	0	0	0.00361	0	49	4				
STYK1	55359	broad.mit.edu	37	12	10772796	10772796	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr12:10772796C>T	uc001qys.2	-	11	1737	c.1216G>A	c.(1216-1218)GCT>ACT	p.A406T		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	406						integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						CCGGCCACAGCTGCATACAGT	0.483		NaN								HNSCC(73;0.22)			0	0	0	0.00361	0	123	130				
PDE3A	5139	broad.mit.edu	37	12	20774241	20774241	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr12:20774241G>A	uc001reh.1	+	5	1458	c.1436G>A	c.(1435-1437)TGG>TAG	p.W479*		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	479					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CCTGATTCTTGGAATAATCCA	0.378		NaN											0	0	0	0.001368	0	13	19				
SOX5	6660	broad.mit.edu	37	12	23893927	23893927	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr12:23893927C>G	uc001rfw.2	-	5	717	c.615G>C	c.(613-615)ATG>ATC	p.M205I	SOX5_uc001rfx.2_Missense_Mutation_p.M192I|SOX5_uc001rfy.2_Missense_Mutation_p.M192I|SOX5_uc010siv.1_Missense_Mutation_p.M192I|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Missense_Mutation_p.M157I	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	205	Potential.				transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						GCTGGTTGATCATACCCATGA	0.438		NaN											0	0	0	0.001786	0	31	36				
TENC1	23371	broad.mit.edu	37	12	53454002	53454002	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr12:53454002G>A	uc001sbp.2	+	18	2712	c.2577G>A	c.(2575-2577)TTG>TTA	p.L859L	TENC1_uc001sbl.2_Silent_p.L735L|TENC1_uc001sbn.2_Silent_p.L869L|TENC1_uc001sbq.2_Intron|TENC1_uc001sbr.2_RNA|TENC1_uc009zmr.2_Silent_p.L354L|TENC1_uc001sbs.2_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	859	Pro-rich.				intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						GGTACCCATTGCCTGGGCACC	0.637		NaN											0	0	0	0.004482	0	7	7				
ESYT1	23344	broad.mit.edu	37	12	56536837	56536837	+	Silent	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr12:56536837C>G	uc001sjq.2	+	28	3074	c.3024C>G	c.(3022-3024)CCC>CCG	p.P1008P	ESYT1_uc001sjr.2_Silent_p.P1018P	NM_015292	NP_056107	Q9BSJ8	ESYT1_HUMAN	extended synaptotagmin-like protein 1	1008	C2 5.					integral to membrane				ovary(4)|skin(1)	5						CTCCTGATCCCTATGTGTCAC	0.522		NaN											0	0	0	0.00361	0	75	85				
HCFC2	29915	broad.mit.edu	37	12	104476336	104476336	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr12:104476336C>T	uc001tkj.3	+	6	929	c.826C>T	c.(826-828)CAT>TAT	p.H276Y	HCFC2_uc009zul.2_RNA	NM_013320	NP_037452	Q9Y5Z7	HCFC2_HUMAN	host cell factor C2	276	Kelch 4.				regulation of transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus	transcription coactivator activity			ovary(2)|central_nervous_system(1)	3						GACTTCACCTCATGATTGTGA	0.333		NaN											0	0	0	0.002299	0	21	38				
RNF10	9921	broad.mit.edu	37	12	121001667	121001667	+	Missense_Mutation	SNP	G	G	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr12:121001667G>T	uc001typ.3	+	10	2069	c.1586G>T	c.(1585-1587)CGG>CTG	p.R529L	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Missense_Mutation_p.R440L	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	529					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGCCTCGTGCGGGAGTACGGC	0.572		NaN											1	0	5.41795e-27	0.00361	6.49664e-27	78	111				
TMEM132D	121256	broad.mit.edu	37	12	130185145	130185145	+	Missense_Mutation	SNP	A	A	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr12:130185145A>T	uc009zyl.1	-	2	506	c.178T>A	c.(178-180)TTC>ATC	p.F60I		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	60	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TTCAGGAAGAAGGAGACGTCC	0.552		NaN											0	0	0	0.006999	0	41	40				
STOML3	161003	broad.mit.edu	37	13	39544479	39544479	+	Missense_Mutation	SNP	T	T	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr13:39544479T>A	uc001uwx.2	-	5	497	c.359A>T	c.(358-360)TAT>TTT	p.Y120F	STOML3_uc010tez.1_Missense_Mutation_p.Y111F	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	120	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		GATTCTGTAATAGACAACTCC	0.433		NaN											0	0	0	0.00361	0	69	86				
THSD1	55901	broad.mit.edu	37	13	52952521	52952521	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr13:52952521G>A	uc001vgo.2	-	5	2129	c.1584C>T	c.(1582-1584)TTC>TTT	p.F528F	THSD1_uc001vgp.2_Silent_p.F475F|THSD1_uc010tgz.1_Silent_p.F149F|THSD1_uc010aea.2_5'UTR	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	528	Cytoplasmic (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		GGCGGTAGCTGAACAGAGGTG	0.552		NaN											0	0	0	0.001168	0	5	256				
RBM26	64062	broad.mit.edu	37	13	79916956	79916956	+	Nonsense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr13:79916956G>C	uc001vkz.2	-	17	2290	c.2276C>G	c.(2275-2277)TCA>TGA	p.S759*	RBM26_uc001vky.2_Nonsense_Mutation_p.S730*|RBM26_uc001vla.2_Nonsense_Mutation_p.S733*|RBM26_uc010tia.1_Nonsense_Mutation_p.S114*|RBM26_uc001vkx.2_Nonsense_Mutation_p.S469*	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	757	Potential.				mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		CTCCAGTTTTGAAATTAACAT	0.244		NaN											0	0	0	0.00278	0	19	42				
PRMT5	10419	broad.mit.edu	37	14	23398498	23398498	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr14:23398498C>T	uc001whm.1	-	1	164	c.73G>A	c.(73-75)GAA>AAA	p.E25K	PRMT5_uc001whl.1_5'UTR|PRMT5_uc010akd.1_RNA|PRMT5_uc010tnf.1_5'UTR|PRMT5_uc010tng.1_5'UTR|PRMT5_uc010tnh.1_Missense_Mutation_p.E25K|PRMT5_uc001whn.1_5'UTR	NM_006109	NP_006100	O14744	ANM5_HUMAN	protein arginine methyltransferase 5 isoform a	25					cell proliferation|histone H4-R3 methylation|ncRNA metabolic process|regulation of mitosis|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	histone-arginine N-methyltransferase activity|protein binding|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding			ovary(1)	1	all_cancers(95;2.76e-05)			GBM - Glioblastoma multiforme(265;0.0126)		TCAGCTATTTCGGGGACGCAA	0.682		NaN											0	0	0	0.007413	0	19	18				
ACIN1	22985	broad.mit.edu	37	14	23533388	23533388	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr14:23533388C>G	uc001wit.3	-	12	3023	c.2695G>C	c.(2695-2697)GAG>CAG	p.E899Q	ACIN1_uc001wio.3_RNA|ACIN1_uc001wip.3_Missense_Mutation_p.E141Q|ACIN1_uc001wiq.3_Missense_Mutation_p.E141Q|ACIN1_uc001wir.3_Missense_Mutation_p.E172Q|ACIN1_uc001wis.3_Missense_Mutation_p.E580Q|ACIN1_uc010akg.2_Missense_Mutation_p.E886Q	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	899					apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		GTCTCATCCTCAGAGATGCGA	0.567		NaN											0	0	0	0.002222	0	44	64				
NIN	51199	broad.mit.edu	37	14	51259486	51259486	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr14:51259486C>A	uc001wym.2	-	5	570	c.379G>T	c.(379-381)GAG>TAG	p.E127*	NIN_uc001wyi.2_Nonsense_Mutation_p.E127*|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Nonsense_Mutation_p.E127*|NIN_uc010tqp.1_Nonsense_Mutation_p.E133*|NIN_uc001wyo.2_Nonsense_Mutation_p.E127*|NIN_uc001wyp.1_Nonsense_Mutation_p.E89*	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	127					centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					TCCAGTGGCTCAATCACCGTC	0.547		NaN	T	PDGFRB	MPD								1	0	4.62619e-21	0.004289	5.49749e-21	35	50				
FLVCR2	55640	broad.mit.edu	37	14	76045321	76045321	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr14:76045321G>A	uc001xrs.2	+	1	382	c.6G>A	c.(4-6)GTG>GTA	p.V2V		NM_017791	NP_060261	Q9UPI3	FLVC2_HUMAN	feline leukemia virus subgroup C cellular	2					transmembrane transport	integral to membrane|plasma membrane	heme binding|heme transporter activity				0				BRCA - Breast invasive adenocarcinoma(234;0.029)		TGGCGATGGTGAATGAAGGTC	0.597		NaN									OREG0022816	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.001786	0	27	43				
TDP1	55775	broad.mit.edu	37	14	90455360	90455360	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr14:90455360G>C	uc001xxy.2	+	11	1542	c.1243G>C	c.(1243-1245)GAG>CAG	p.E415Q	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Missense_Mutation_p.E415Q|TDP1_uc010atn.2_Missense_Mutation_p.E415Q|TDP1_uc001xya.2_Missense_Mutation_p.E176Q|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Missense_Mutation_p.E415Q|TDP1_uc001xyd.1_Missense_Mutation_p.E30Q	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	415					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		GTTATGTTCTGAGTTTAAAGA	0.493		NaN						Repair_of_DNA-protein_crosslinks					0	0	0	0.002445	0	32	39				
MOAP1	64112	broad.mit.edu	37	14	93650050	93650050	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr14:93650050C>T	uc001ybj.2	-	3	908	c.538G>A	c.(538-540)GAA>AAA	p.E180K	C14orf109_uc001ybk.3_5'Flank|C14orf109_uc010auo.2_5'Flank	NM_022151	NP_071434	Q96BY2	MOAP1_HUMAN	modulator of apoptosis 1	180				EEE->AAA: No effect on RASSF1-binding; interacts with BAX in the absence of RASSF1.	activation of caspase activity|apoptotic nuclear change	cytoplasm	protein homodimerization activity			skin(2)|ovary(1)	3		all_cancers(154;0.00528)|Acute lymphoblastic leukemia(33;0.0497)|all_epithelial(191;0.125)|all_neural(303;0.13)		Epithelial(152;0.178)|all cancers(159;0.2)|COAD - Colon adenocarcinoma(157;0.204)		cgtccaaattcttcttctcct	0		NaN											0	0	0	0.00361	0	49	47				
OR4N4	283694	broad.mit.edu	37	15	22382961	22382961	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr15:22382961C>T	uc001yuc.1	+	7	1470	c.489C>T	c.(487-489)ATC>ATT	p.I163I	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Silent_p.I163I	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TGGTCCTCATCCTCCGCTTGC	0.522		NaN											0	0	0	0.00361	0	55	235				
ARHGAP11A	9824	broad.mit.edu	37	15	32928484	32928484	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr15:32928484G>A	uc001zgy.1	+	12	2232	c.1510G>A	c.(1510-1512)GAA>AAA	p.E504K	ARHGAP11A_uc010ubw.1_Missense_Mutation_p.E315K|ARHGAP11A_uc010ubx.1_Missense_Mutation_p.E315K	NM_014783	NP_055598	Q6P4F7	RHGBA_HUMAN	Rho GTPase activating protein 11A isoform 1	504					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			skin(3)|breast(2)|urinary_tract(1)	6		all_lung(180;1.3e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)		TAAGTCTGAGGAAACCTTACT	0.368		NaN											0	0	0	0.002096	0	30	26				
CATSPER2	117155	broad.mit.edu	37	15	43939559	43939559	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr15:43939559C>T	uc001zsh.2	-	3	467	c.252G>A	c.(250-252)TTG>TTA	p.L84L	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Silent_p.L84L|CATSPER2_uc001zsj.2_Silent_p.L84L|CATSPER2_uc001zsk.2_Silent_p.L84L|CATSPER2_uc001zsl.1_RNA	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	84	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		GAAGCCTGCTCAACAGCCTCT	0.498		NaN											0	0	0	0.00623	0	38	151				
SPG11	80208	broad.mit.edu	37	15	44876629	44876629	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr15:44876629G>C	uc001ztx.2	-	30	5280	c.5249C>G	c.(5248-5250)TCC>TGC	p.S1750C	SPG11_uc010bdw.2_Missense_Mutation_p.S39C|SPG11_uc010ueh.1_Missense_Mutation_p.S1750C|SPG11_uc010uei.1_Missense_Mutation_p.S1750C|SPG11_uc001zty.1_Missense_Mutation_p.S479C	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1750	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		TGAGAAAAAGGAAGAAGCTGC	0.463		NaN											0	0	0	0.002445	0	34	38				
TNFAIP8L3	388121	broad.mit.edu	37	15	51397222	51397222	+	Missense_Mutation	SNP	A	A	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr15:51397222A>G	uc001zyy.2	-	1	252	c.152T>C	c.(151-153)CTT>CCT	p.L51P		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	51											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		TCCCCTCTGAAGATGAAAAGA	0.542		NaN											0	0	0	0.003954	0	14	110				
TNFAIP8L3	388121	broad.mit.edu	37	15	51397239	51397240	+	Missense_Mutation	DNP	GA	GA	AT			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr15:51397239_51397240GA>AT	uc001zyy.2	-	1	234_235	c.134_135TC>AT	c.(133-135)ATC>AAT	p.I45N		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	45											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		AAGATAAGGGGATGAGTCTTGT	0.535		NaN											0	0	0	0.004672	0	14	104				
ADAM10	102	broad.mit.edu	37	15	58932978	58932978	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr15:58932978G>A	uc002afd.1	-	8	1454	c.1010C>T	c.(1009-1011)TCA>TTA	p.S337L	ADAM10_uc010bgc.1_RNA|ADAM10_uc010ugz.1_Missense_Mutation_p.S36L|ADAM10_uc002afe.1_RNA	NM_001110	NP_001101	O14672	ADA10_HUMAN	ADAM metallopeptidase domain 10 precursor	337	Peptidase M12B.|Extracellular (Potential).				cell-cell signaling|constitutive protein ectodomain proteolysis|epidermal growth factor receptor signaling pathway|in utero embryonic development|integrin-mediated signaling pathway|monocyte activation|negative regulation of cell adhesion|Notch receptor processing|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of T cell chemotaxis|protein phosphorylation|response to tumor necrosis factor	cell surface|endomembrane system|Golgi-associated vesicle|integral to membrane|nucleus|plasma membrane	integrin binding|metalloendopeptidase activity|protein homodimerization activity|protein kinase binding|SH3 domain binding|zinc ion binding			skin(2)	2				GBM - Glioblastoma multiforme(80;0.202)		TAAACTACCTGAAGGTGCTCC	0.388		NaN											0	0	0	0.001855	0	12	16				
FAM63B	54629	broad.mit.edu	37	15	59139599	59139599	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr15:59139599C>T	uc002afj.2	+	7	1674	c.1472C>T	c.(1471-1473)TCA>TTA	p.S491L	FAM63B_uc002afi.2_Missense_Mutation_p.S491L|FAM63B_uc002afk.2_RNA|FAM63B_uc002afl.2_RNA	NM_001040450	NP_001035540	Q8NBR6	FA63B_HUMAN	hypothetical protein LOC54629 isoform a	491										central_nervous_system(1)	1						TTCTGTGACTCAGAATTTCAT	0.393		NaN											0	0	0	0.003271	0	37	30				
HERC1	8925	broad.mit.edu	37	15	63986695	63986695	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr15:63986695G>A	uc002amp.2	-	29	5444	c.5296C>T	c.(5296-5298)CAA>TAA	p.Q1766*		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	1766					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TCTACTGGTTGATAATGAACA	0.423		NaN											0	0	0	0.002836	0	32	31				
SCAPER	49855	broad.mit.edu	37	15	76763592	76763592	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr15:76763592C>G	uc002bby.2	-	24	3098	c.3039G>C	c.(3037-3039)AAG>AAC	p.K1013N	SCAPER_uc010bkr.2_Missense_Mutation_p.K321N|SCAPER_uc002bbx.2_Missense_Mutation_p.K767N|SCAPER_uc002bbz.1_Missense_Mutation_p.K884N	NM_020843	NP_065894	Q9BY12	SCAPE_HUMAN	S-phase cyclin A-associated protein in the ER	1012						endoplasmic reticulum|nucleus	zinc ion binding			large_intestine(1)|lung(1)|ovary(1)	3						AGAAGGTAATCTTGTTACTAA	0.378		NaN											0	0	0	0.007291	0	27	40				
PKMYT1	9088	broad.mit.edu	37	16	3025757	3025757	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:3025757G>A	uc002csn.2	-	4	878	c.435C>T	c.(433-435)TTC>TTT	p.F145F	PKMYT1_uc010uwn.1_RNA|PKMYT1_uc002csm.2_Silent_p.F145F|PKMYT1_uc002cso.2_Silent_p.F76F|PKMYT1_uc002csp.2_Silent_p.F136F|PKMYT1_uc002csq.2_Silent_p.F136F|PKMYT1_uc010bsy.1_Silent_p.F136F	NM_004203	NP_004194	Q99640	PMYT1_HUMAN	protein kinase Myt1 isoform 1	145	Protein kinase.				G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis	endoplasmic reticulum membrane|Golgi membrane|membrane fraction|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1						TGGGGCCCCGGAATGGTGACA	0.677		NaN											0	0	0	0.002445	0	33	24				
PKMYT1	9088	broad.mit.edu	37	16	3026840	3026840	+	Missense_Mutation	SNP	G	G	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:3026840G>T	uc002csn.2	-	3	646	c.203C>A	c.(202-204)CCT>CAT	p.P68H	PKMYT1_uc010uwn.1_RNA|PKMYT1_uc002csm.2_Missense_Mutation_p.P68H|PKMYT1_uc002cso.2_Intron|PKMYT1_uc002csp.2_Missense_Mutation_p.P59H|PKMYT1_uc002csq.2_Missense_Mutation_p.P59H|PKMYT1_uc010bsy.1_Missense_Mutation_p.P59H	NM_004203	NP_004194	Q99640	PMYT1_HUMAN	protein kinase Myt1 isoform 1	68	Pro-rich.				G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis	endoplasmic reticulum membrane|Golgi membrane|membrane fraction|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1						GGTCCGAGGAGGGAAGAGGCG	0.692		NaN											1	0	0.000602214	0.000602	0.000693856	5	4				
PKMYT1	9088	broad.mit.edu	37	16	3026845	3026845	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:3026845G>A	uc002csn.2	-	3	641	c.198C>T	c.(196-198)CTC>CTT	p.L66L	PKMYT1_uc010uwn.1_RNA|PKMYT1_uc002csm.2_Silent_p.L66L|PKMYT1_uc002cso.2_Intron|PKMYT1_uc002csp.2_Silent_p.L57L|PKMYT1_uc002csq.2_Silent_p.L57L|PKMYT1_uc010bsy.1_Silent_p.L57L	NM_004203	NP_004194	Q99640	PMYT1_HUMAN	protein kinase Myt1 isoform 1	66	Pro-rich.				G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis	endoplasmic reticulum membrane|Golgi membrane|membrane fraction|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1						GAGGAGGGAAGAGGCGGCTGA	0.687		NaN											0	0	0	0.000248	0	4	4				
BFAR	51283	broad.mit.edu	37	16	14749055	14749055	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:14749055C>T	uc002dco.2	+	5	1052	c.771C>T	c.(769-771)CTC>CTT	p.L257L	BFAR_uc002dcp.2_Silent_p.L132L|BFAR_uc010uzh.1_Silent_p.L129L	NM_016561	NP_057645	Q9NZS9	BFAR_HUMAN	bifunctional apoptosis regulator	257	Lumenal (Potential).				anti-apoptosis|apoptosis	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	structural molecule activity|zinc ion binding			ovary(1)|skin(1)	2						CCCAGAATCTCTGGGAATATA	0.328		NaN											0	0	0	0.002222	0	46	53				
QPRT	23475	broad.mit.edu	37	16	29706228	29706228	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:29706228G>A	uc002dto.2	+	2	335	c.257G>A	c.(256-258)AGA>AAA	p.R86K	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|QPRT_uc010vdu.1_Intron	NM_014298	NP_055113	Q15274	NADC_HUMAN	quinolinate phosphoribosyltransferase	86					protein oligomerization|quinolinate catabolic process|water-soluble vitamin metabolic process	cytosol	nicotinate-nucleotide diphosphorylase (carboxylating) activity|protein homodimerization activity				0					Niacin(DB00627)	CCGGTGGCCAGAGTGGCCGAG	0.657		NaN											0	0	0	0.002222	0	40	37				
CETP	1071	broad.mit.edu	37	16	57005235	57005235	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:57005235C>G	uc002eki.2	+	7	657	c.600C>G	c.(598-600)ATC>ATG	p.I200M	CETP_uc002ekj.2_Missense_Mutation_p.I200M	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	200					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						TGCCCCAGATCTGCAAAGAGA	0.577		NaN											0	0	0	0.00361	0	116	137				
NLRC5	84166	broad.mit.edu	37	16	57092020	57092020	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:57092020C>G	uc002ekk.1	+	28	4015	c.3790C>G	c.(3790-3792)CTG>GTG	p.L1264V	NLRC5_uc002ekn.2_Intron|NLRC5_uc002ekl.2_Missense_Mutation_p.L1068V|NLRC5_uc002ekm.2_Missense_Mutation_p.L1038V|NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekp.1_Missense_Mutation_p.L179V|NLRC5_uc002ekq.1_5'UTR|NLRC5_uc002ekr.1_Missense_Mutation_p.L151V	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1264	LRR 13.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				CAGATGCCTTCTGGAATGTCT	0.572		NaN											0	0	0	0.000978	0	10	12				
CMTM1	113540	broad.mit.edu	37	16	66603973	66603973	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:66603973G>A	uc002epi.3	+	2	339	c.216G>A	c.(214-216)CTG>CTA	p.L72L	CMTM1_uc002epb.3_RNA|CMTM1_uc002epc.3_RNA|CMTM1_uc002epd.3_Intron|CMTM1_uc002epe.3_Intron|CMTM1_uc002epf.3_Intron|CMTM1_uc002epg.3_Intron|CMTM1_uc002eph.3_Silent_p.L72L|CMTM1_uc002epl.3_Intron|CMTM1_uc002epj.3_Intron|CMTM1_uc002epk.3_Intron|CMTM1_uc002epa.3_Intron|CMTM1_uc002epn.3_Silent_p.L189L|CMTM1_uc002epo.3_RNA|CMTM1_uc002epp.3_RNA|CMTM1_uc002epq.3_RNA|CMTM1_uc010cds.2_RNA|CMTM1_uc002epr.3_Silent_p.L189L|CMTM1_uc002epm.3_RNA|CMTM1_uc002eps.2_RNA	NM_181269	NP_851786	Q8IZ96	CKLF1_HUMAN	chemokine-like factor superfamily 1 isoform 1	72	MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0702)|Epithelial(162;0.222)		ACCACTTGCTGACCTATTTAC	0.388		NaN											0	0	0	0.00361	0	76	101				
MTSS1L	92154	broad.mit.edu	37	16	70713737	70713737	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:70713737C>G	uc002ezj.2	-	5	594	c.334G>C	c.(334-336)GAG>CAG	p.E112Q	MTSS1L_uc002ezk.1_Missense_Mutation_p.E32Q	NM_138383	NP_612392	Q765P7	MTSSL_HUMAN	metastasis suppressor 1-like	112	IMD.				filopodium assembly|signal transduction		actin binding|cytoskeletal adaptor activity|SH3 domain binding			central_nervous_system(1)	1						TTCCAGTCCTCGATGCGCTCC	0.602		NaN											0	0	0	0.003163	0	14	10				
ZFHX3	463	broad.mit.edu	37	16	72821414	72821414	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:72821414C>T	uc002fck.2	-	10	11434	c.10761G>A	c.(10759-10761)TCG>TCA	p.S3587S	uc002fcj.1_Intron|ZFHX3_uc002fcl.2_Silent_p.S2673S	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	3587					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CGGCAGACTGCGAGGTAGATG	0.617		NaN											0	0	0	0.00361	0	64	85				
CHST6	4166	broad.mit.edu	37	16	75512780	75512780	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:75512780C>T	uc002fef.2	-	3	1127	c.947G>A	c.(946-948)CGC>CAC	p.R316H	CHST6_uc002feg.1_RNA|CHST6_uc002feh.1_Missense_Mutation_p.R316H	NM_021615	NP_067628	Q9GZX3	CHST6_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	316	Lumenal (Potential).				keratan sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						GAAGGCTTCGCGGCGCGCACC	0.627		NaN											0	0	0	0.005524	0	40	46				
ZCCHC14	23174	broad.mit.edu	37	16	87446453	87446453	+	Nonsense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:87446453G>C	uc002fjz.1	-	12	1490	c.1463C>G	c.(1462-1464)TCA>TGA	p.S488*	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_Nonsense_Mutation_p.S264*	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	488					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		GTGGTGGCCTGATGGATTGGA	0.612		NaN											0	0	0	0.001786	0	33	40				
DPEP1	1800	broad.mit.edu	37	16	89703951	89703951	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:89703951C>T	uc010cin.2	+	8	1047	c.844C>T	c.(844-846)CAA>TAA	p.Q282*	DPEP1_uc002fnr.3_Nonsense_Mutation_p.Q282*|DPEP1_uc002fns.3_Nonsense_Mutation_p.Q282*	NM_001128141	NP_001121613	P16444	DPEP1_HUMAN	dipeptidase 1 precursor	282					proteolysis	anchored to membrane|apical plasma membrane|microvillus membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity|protein binding			large_intestine(1)	1		all_lung(18;0.0054)|all_hematologic(23;0.094)		BRCA - Breast invasive adenocarcinoma(80;0.0258)	Cilastatin(DB01597)	CAACCTGTCCCAAGTGGCCGG	0.577		NaN											0	0	0	0.00361	0	77	65				
SLC43A2	124935	broad.mit.edu	37	17	1478943	1478943	+	Silent	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr17:1478943G>C	uc002fsv.2	-	14	1754	c.1665C>G	c.(1663-1665)CTC>CTG	p.L555L	SLC43A2_uc002fsu.2_Silent_p.L559L	NM_152346	NP_689559	Q8N370	LAT4_HUMAN	solute carrier family 43, member 2	555					cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0883)		TTTTGAGGAAGAGTTTGTCAT	0.617		NaN											0	0	0	0.003163	0	10	1				
ITGAE	3682	broad.mit.edu	37	17	3649140	3649140	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr17:3649140C>G	uc002fwo.3	-	18	2336	c.2237G>C	c.(2236-2238)AGA>ACA	p.R746T		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	746	Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		CAGACAGCTTCTTACGTCTGA	0.587		NaN											0	0	0	0.00361	0	49	6				
ANKFY1	51479	broad.mit.edu	37	17	4080443	4080443	+	Nonsense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr17:4080443G>C	uc002fxq.1	-	19	2791	c.2753C>G	c.(2752-2754)TCA>TGA	p.S918*	ANKFY1_uc002fxn.2_Nonsense_Mutation_p.S960*|ANKFY1_uc002fxo.2_Nonsense_Mutation_p.S919*|ANKFY1_uc002fxp.2_Nonsense_Mutation_p.S917*|ANKFY1_uc010ckp.2_Nonsense_Mutation_p.S860*	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	918	ANK 17.					endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						AATAATTTCTGAGCCTGCTTG	0.448		NaN											0	0	0	0.00361	0	45	1				
GPS2	2874	broad.mit.edu	37	17	7216947	7216947	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr17:7216947G>A	uc002gfv.1	-	6	837	c.574C>T	c.(574-576)CAG>TAG	p.Q192*	GPS2_uc002gfw.1_Nonsense_Mutation_p.Q154*|GPS2_uc002gfx.1_Nonsense_Mutation_p.Q192*|NEURL4_uc002gfy.1_RNA|GPS2_uc002gfz.1_Nonsense_Mutation_p.Q192*	NM_004489	NP_004480	Q13227	GPS2_HUMAN	G protein pathway suppressor 2	192					cell cycle|inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of transcription from RNA polymerase II promoter	transcriptional repressor complex	GTPase inhibitor activity|protein binding|transcription corepressor activity			ovary(2)|pancreas(1)	3		Prostate(122;0.157)				GGTGGGGGCTGAGCAGTCCCA	0.577		NaN									OREG0024133	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.00361	0	64	5				
ALOX12B	242	broad.mit.edu	37	17	7976526	7976526	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr17:7976526C>T	uc002gjy.1	-	14	2127	c.1866G>A	c.(1864-1866)GTG>GTA	p.V622V		NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	622	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						ACGTGGTCTTCACATCCGGCA	0.622		NaN								Multiple Myeloma(8;0.094)			0	0	0	0.000248	0	4	119				
DNAH9	1770	broad.mit.edu	37	17	11572854	11572854	+	Silent	SNP	G	G	A	rs36016893		TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr17:11572854G>A	uc002gne.2	+	17	3164	c.3096G>A	c.(3094-3096)GGG>GGA	p.G1032G	DNAH9_uc010coo.2_Silent_p.G326G	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1032	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGCTGTACGGGCACATCCTCA	0.517		NaN											0	0	0	0.001168	0	4	91				
CPD	1362	broad.mit.edu	37	17	28791803	28791803	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr17:28791803G>C	uc002hfb.1	+	21	4129	c.4114G>C	c.(4114-4116)GAG>CAG	p.E1372Q	CPD_uc010wbo.1_Missense_Mutation_p.E1125Q|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	1372	Cytoplasmic (Potential).				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						AGACACTGAAGAGGAAACATT	0.413		NaN											0	0	0	0.00361	0	57	75				
ATP6V0A1	535	broad.mit.edu	37	17	40618453	40618453	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr17:40618453C>G	uc002hzr.2	+	3	291	c.124C>G	c.(124-126)CCA>GCA	p.P42A	ATP6V0A1_uc002hzq.2_Missense_Mutation_p.P42A|ATP6V0A1_uc002hzs.2_Missense_Mutation_p.P42A|ATP6V0A1_uc010wgj.1_Missense_Mutation_p.P42A|ATP6V0A1_uc010wgk.1_Missense_Mutation_p.P42A|ATP6V0A1_uc010cyg.2_Intron|ATP6V0A1_uc002hzp.1_Missense_Mutation_p.P42A	NM_001130021	NP_001123493	Q93050	VPP1_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit a1	42	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytoplasmic vesicle membrane|endosome membrane|Golgi apparatus|integral to membrane|melanosome|nucleus|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1		all_cancers(22;1.18e-05)|Breast(137;0.000105)|all_epithelial(22;0.000254)		BRCA - Breast invasive adenocarcinoma(366;0.137)		TCAGTTAAATCCAGATGTGAA	0.318		NaN											0	0	0	0.005443	0	26	24				
TLK2	11011	broad.mit.edu	37	17	60598163	60598163	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr17:60598163G>C	uc010ddp.2	+	3	379	c.111G>C	c.(109-111)CAG>CAC	p.Q37H	TLK2_uc002izx.3_5'UTR|TLK2_uc002izz.3_Missense_Mutation_p.Q37H|TLK2_uc002jaa.3_Missense_Mutation_p.Q37H|TLK2_uc010wpd.1_Missense_Mutation_p.Q37H	NM_006852	NP_006843	Q86UE8	TLK2_HUMAN	tousled-like kinase 2 isoform A	37					cell cycle|chromatin modification|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|kidney(1)	2						CTTCCAACCAGAGCTTGTGCA	0.343		NaN											0	0	0	0.00361	0	47	110				
CSH1	1442	broad.mit.edu	37	17	61972839	61972839	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr17:61972839C>T	uc002jcs.1	-	4	566	c.450G>A	c.(448-450)CTG>CTA	p.L150L	CSH2_uc002jck.2_Intron|CSH1_uc002jcp.1_Silent_p.L111L|CSH1_uc002jcq.1_Silent_p.L111L|CSH1_uc002jcr.1_3'UTR|CSH1_uc002jct.1_Silent_p.L116L|CSH1_uc002jcu.1_Silent_p.L150L|CSH1_uc002jcv.1_Intron|CSH1_uc002jcw.2_Silent_p.L150L|CSH1_uc002jcy.2_3'UTR	NM_001317	NP_001308	P01243	CSH_HUMAN	chorionic somatomammotropin hormone 1 isoform 1	150					female pregnancy|signal transduction	extracellular region	hormone activity|metal ion binding			skin(1)	1						TCACCCCCATCAGCGTTTGGA	0.562		NaN							Russell-Silver_syndrome				0	0	0	0.00361	0	45	91				
HELZ	9931	broad.mit.edu	37	17	65175038	65175038	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr17:65175038G>A	uc010wqk.1	-	13	1354	c.1167C>T	c.(1165-1167)CTC>CTT	p.L389L	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Silent_p.L389L	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					TCAGGTATTCGAGATCTAAAT	0.259		NaN											0	0	0	0.004289	0	37	62				
TRIM65	201292	broad.mit.edu	37	17	73892977	73892977	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr17:73892977G>A	uc002jpx.2	-	1	78	c.42C>T	c.(40-42)ATC>ATT	p.I14I		NM_173547	NP_775818	Q6PJ69	TRI65_HUMAN	tripartite motif-containing 65	14	RING-type.					intracellular	zinc ion binding				0			Epithelial(20;7.53e-06)|all cancers(21;9.11e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00092)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCCCCAGGCAGATGGCGCAGG	0.726		NaN											0	0	0	0.001168	0	5	8				
MIB1	57534	broad.mit.edu	37	18	19345737	19345737	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr18:19345737C>T	uc002ktq.2	+	2	234	c.234C>T	c.(232-234)ATC>ATT	p.I78I	MIB1_uc002ktp.2_5'UTR	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	78					Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			TAATAGGCATCAAGCATGATG	0.363		NaN											0	0	0	0.001786	0	29	38				
MIB1	57534	broad.mit.edu	37	18	19345741	19345741	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr18:19345741C>G	uc002ktq.2	+	2	238	c.238C>G	c.(238-240)CAT>GAT	p.H80D	MIB1_uc002ktp.2_5'UTR	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	80	ZZ-type.				Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			AGGCATCAAGCATGATGGAAC	0.363		NaN											0	0	0	0.003271	0	32	39				
IMPACT	55364	broad.mit.edu	37	18	22025392	22025392	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr18:22025392G>C	uc002kvh.3	+	8	742	c.630G>C	c.(628-630)AAG>AAC	p.K210N	IMPACT_uc002kvg.3_Missense_Mutation_p.K192N	NM_018439	NP_060909	Q9P2X3	IMPCT_HUMAN	Impact homolog	210											0	all_cancers(21;0.00018)|all_epithelial(16;1.5e-06)|Lung NSC(20;0.0027)|all_lung(20;0.0085)|Colorectal(14;0.0361)|Ovarian(20;0.0991)					ATGAGAATAAGAAAATAGCTA	0.308		NaN											0	0	0	0.002836	0	30	47				
BSG	682	broad.mit.edu	37	19	580761	580761	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:580761G>C	uc002loz.2	+	5	869	c.771G>C	c.(769-771)AAG>AAC	p.K257N	BSG_uc002loy.2_Missense_Mutation_p.K77N|BSG_uc002lpa.2_Missense_Mutation_p.K141N|BSG_uc002lpb.2_RNA|BSG_uc010drr.2_Missense_Mutation_p.K141N|BSG_uc002lpc.2_Missense_Mutation_p.K304N|BSG_uc002lpd.2_5'Flank	NM_001728	NP_001719	P35613	BASI_HUMAN	basigin isoform 1 precursor	257	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell surface receptor linked signaling pathway|leukocyte migration|pyruvate metabolic process	Golgi membrane|integral to membrane|melanosome	lactate transmembrane transporter activity|mannose binding|protein binding				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTGGTACAAGATCACTGACT	0.612		NaN											0	0	0	0.007413	0	19	38				
MUC16	94025	broad.mit.edu	37	19	9089752	9089752	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:9089752G>A	uc002mkp.2	-	1	2267	c.2063C>T	c.(2062-2064)TCA>TTA	p.S688L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	688	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTGAAAGCTGAGGACTGTAG	0.507		NaN											0	0	0	0.00361	0	58	50				
KRI1	65095	broad.mit.edu	37	19	10668240	10668240	+	Silent	SNP	G	G	A	rs144674130	by1000genomes	TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:10668240G>A	uc002moy.1	-	16	1632	c.1623C>T	c.(1621-1623)CTC>CTT	p.L541L	KRI1_uc002mow.1_Silent_p.L160L|KRI1_uc002mox.1_Silent_p.L537L	NM_023008	NP_075384	Q8N9T8	KRI1_HUMAN	KRI1 homolog	541										ovary(1)	1			Epithelial(33;9.2e-06)|all cancers(31;3.9e-05)			CCTCAGTGCTGAGGCCAAAGT	0.602		NaN											0	0	0	0.002299	0	23	25				
KRI1	65095	broad.mit.edu	37	19	10668297	10668297	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:10668297G>A	uc002moy.1	-	16	1575	c.1566C>T	c.(1564-1566)ATC>ATT	p.I522I	KRI1_uc002mow.1_Silent_p.I141I|KRI1_uc002mox.1_Silent_p.I518I	NM_023008	NP_075384	Q8N9T8	KRI1_HUMAN	KRI1 homolog	522										ovary(1)	1			Epithelial(33;9.2e-06)|all cancers(31;3.9e-05)			GCAGGTCGTCGATGATGTCCT	0.617		NaN											0	0	0	0.001786	0	27	46				
SPC24	147841	broad.mit.edu	37	19	11258787	11258787	+	Silent	SNP	G	G	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:11258787G>T	uc002mql.2	-	3	344	c.312C>A	c.(310-312)CTC>CTA	p.L104L		NM_182513	NP_872319	Q8NBT2	SPC24_HUMAN	spindle pole body component 24 homolog	104	Potential.|Interaction with the N-terminus of SPBC25.				cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding				0						GCTCTCTGGTGAGCTGAGTAG	0.607		NaN											1	0	2.0095e-06	0.001984	2.3254e-06	7	18				
ZNF799	90576	broad.mit.edu	37	19	12491855	12491855	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:12491855G>C	uc002mts.3	-	4	687	c.221C>G	c.(220-222)TCT>TGT	p.S74C				Q96GE5	ZN799_HUMAN	Homo sapiens cDNA clone IMAGE:30340957, **** WARNING: chimeric clone ****.	180	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						GTTTCCCAAAGAATTGAAGGA	0.403		NaN											0	0	0	0.00278	0	23	40				
ZNF791	163049	broad.mit.edu	37	19	12739532	12739532	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:12739532C>T	uc002mua.2	+	4	1351	c.1189C>T	c.(1189-1191)CTA>TTA	p.L397L	ZNF791_uc010xml.1_Silent_p.L365L|ZNF791_uc010dyu.1_Silent_p.L288L|ZNF791_uc010xmm.1_Silent_p.L288L	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	397	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CAATTATCCTCTAGATTTGAA	0.363		NaN											0	0	0	0.00361	0	48	64				
RAD23A	5886	broad.mit.edu	37	19	13059906	13059906	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:13059906G>A	uc002mvw.1	+	6	721	c.612G>A	c.(610-612)GGG>GGA	p.G204G	RAD23A_uc002mvx.1_Silent_p.G204G|RAD23A_uc002mvz.1_Silent_p.G204G|RAD23A_uc002mwa.1_Silent_p.G204G|RAD23A_uc002mvy.1_Silent_p.G39G|RAD23A_uc010xmw.1_Silent_p.G39G	NM_005053	NP_005044	P54725	RD23A_HUMAN	UV excision repair protein RAD23 homolog A	204					interspecies interaction between organisms|nucleotide-excision repair|positive regulation of viral genome replication|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding			central_nervous_system(1)	1						GAATTCCTGGGAGCCCCGAGC	0.637		NaN						NER					0	0	0	0.001984	0	7	8				
ZNF93	81931	broad.mit.edu	37	19	20044762	20044762	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:20044762G>C	uc002non.2	+	4	1109	c.998G>C	c.(997-999)AGA>ACA	p.R333T		NM_031218	NP_112495	P35789	ZNF93_HUMAN	zinc finger protein 93	333	C2H2-type 7.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1						ACACATAAGAGAATTCATACT	0.378		NaN											0	0	0	0.001786	0	31	10				
ZNF30	90075	broad.mit.edu	37	19	35434903	35434903	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:35434903G>C	uc010edp.1	+	5	1411	c.1033G>C	c.(1033-1035)GAA>CAA	p.E345Q	ZNF30_uc002nxf.2_Missense_Mutation_p.E264Q|ZNF30_uc010edq.1_Missense_Mutation_p.E346Q|ZNF30_uc010edr.1_Missense_Mutation_p.E346Q	NM_194325	NP_919306	P17039	ZNF30_HUMAN	zinc finger protein 30 isoform b	345	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_lung(56;8.38e-08)|Lung NSC(56;1.31e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)	GBM - Glioblastoma multiforme(1328;0.0265)		GAAACCTTTTGAATGTAAGGA	0.448		NaN											0	0	0	0.00361	0	54	66				
ZNF461	92283	broad.mit.edu	37	19	37129762	37129762	+	Silent	SNP	T	T	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:37129762T>C	uc002oem.2	-	6	1713	c.1485A>G	c.(1483-1485)AAA>AAG	p.K495K	ZNF461_uc002oen.2_Silent_p.K464K|ZNF461_uc010xtj.1_Silent_p.K472K	NM_153257	NP_694989	Q8TAF7	ZN461_HUMAN	gonadotropin inducible transcription repressor	495					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			ATTCATAGGGTTTCTCACCAG	0.393		NaN											0	0	0	0.00245	0	15	68				
CATSPERG	57828	broad.mit.edu	37	19	38853103	38853103	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:38853103G>C	uc002oih.3	+	19	2332	c.2245G>C	c.(2245-2247)GAG>CAG	p.E749Q	CATSPERG_uc002oig.3_Missense_Mutation_p.E709Q|CATSPERG_uc002oif.3_Missense_Mutation_p.E389Q|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	749	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CTACAACCTCGAGTCCGCGTA	0.582		NaN											0	0	0	0.003271	0	36	54				
GRLF1	2909	broad.mit.edu	37	19	47423517	47423517	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:47423517C>T	uc010ekv.2	+	1	1585	c.1585C>T	c.(1585-1587)CGA>TGA	p.R529*		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	529	FF 4.				axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		AGAGGAACAGCGATTTAAAGC	0.443		NaN											0	0	0	0.00361	0	74	102				
SULT2B1	6820	broad.mit.edu	37	19	49090664	49090664	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:49090664C>T	uc002pjl.2	+	3	474	c.393C>T	c.(391-393)TTC>TTT	p.F131F	SULT2B1_uc002pjm.2_Silent_p.F116F	NM_177973	NP_814444	O00204	ST2B1_HUMAN	sulfotransferase family, cytosolic, 2B, member 1	131					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	alcohol sulfotransferase activity|protein binding|steroid sulfotransferase activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000115)|all cancers(93;0.000147)|GBM - Glioblastoma multiforme(486;0.00707)|Epithelial(262;0.0178)		TCCAGATCTTCACCAAGGCCT	0.622		NaN											0	0	0	0.00361	0	47	66				
PNKP	11284	broad.mit.edu	37	19	50370414	50370414	+	Silent	SNP	A	A	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:50370414A>G	uc002pqh.2	-	1	100	c.48T>C	c.(46-48)CCT>CCC	p.P16P	PNKP_uc002pqg.2_5'Flank|PNKP_uc002pqi.2_5'UTR|PNKP_uc002pqj.2_Silent_p.P16P|PNKP_uc010enm.2_Silent_p.P16P|PNKP_uc002pqk.2_Silent_p.P16P	NM_007254	NP_009185	Q96T60	PNKP_HUMAN	polynucleotide kinase 3' phosphatase	16					DNA damage response, detection of DNA damage|DNA-dependent DNA replication|nucleotide-excision repair, DNA damage removal|response to oxidative stress|response to radiation	nucleolus	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|damaged DNA binding|double-stranded DNA binding|endonuclease activity|nucleotide kinase activity|polynucleotide 3'-phosphatase activity|protein binding			ovary(1)|kidney(1)	2		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0118)|OV - Ovarian serous cystadenocarcinoma(262;0.0134)		GCGCTCCCCCAGGGGGGCTCT	0.721		NaN						Other_BER_factors					0	0	0	0.001368	0	7	23				
MBOAT7	79143	broad.mit.edu	37	19	54678031	54678031	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:54678031C>T	uc002qdq.2	-	9	1392	c.1126G>A	c.(1126-1128)GAG>AAG	p.E376K	TMC4_uc010erf.2_5'Flank|TMC4_uc002qdo.2_5'Flank|MBOAT7_uc010erg.2_Missense_Mutation_p.E60K|MBOAT7_uc010yem.1_Missense_Mutation_p.E358K|MBOAT7_uc002qdr.2_Missense_Mutation_p.E376K|MBOAT7_uc002qds.2_Missense_Mutation_p.E303K|MBOAT7_uc010yen.1_Missense_Mutation_p.E303K	NM_024298	NP_077274	Q96N66	MBOA7_HUMAN	membrane bound O-acyltransferase domain	376					phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					AGCCGGCCCTCGGCAGCCAGG	0.687		NaN											0	0	0	0.00361	0	62	50				
RNF103	7844	broad.mit.edu	37	2	86832395	86832395	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr2:86832395G>A	uc002srn.2	-	4	1598	c.629C>T	c.(628-630)GCA>GTA	p.A210V	VPS24_uc010ytl.1_Intron|RNF103_uc002srm.2_Missense_Mutation_p.A71V|uc002sro.2_Intron	NM_005667	NP_005658	O00237	RN103_HUMAN	ring finger protein 103	210					central nervous system development|ER-associated protein catabolic process	endoplasmic reticulum membrane|integral to membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(1)	1						CCGAGAAGCTGCATGAGCAGT	0.343		NaN											0	0	0	0.00361	0	82	75				
RMND5A	64795	broad.mit.edu	37	2	86992169	86992169	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr2:86992169G>A	uc010ytm.1	+	5	918	c.541G>A	c.(541-543)GAA>AAA	p.E181K	RMND5A_uc002srs.3_Intron|RMND5A_uc002srr.2_Missense_Mutation_p.E181K	NM_022780	NP_073617	Q9H871	RMD5A_HUMAN	required for meiotic nuclear division 5 homolog	181	CTLH.			E -> G (in Ref. 1; BAB14257).						ovary(1)|skin(1)	2						GTCAAACCGGGAAATGCTTAT	0.373		NaN											0	0	0	0.007835	0	34	40				
RMND5A	64795	broad.mit.edu	37	2	86992260	86992260	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr2:86992260G>A	uc010ytm.1	+	5	1009	c.632G>A	c.(631-633)CGA>CAA	p.R211Q	RMND5A_uc002srs.3_Intron|RMND5A_uc002srr.2_Missense_Mutation_p.R211Q	NM_022780	NP_073617	Q9H871	RMD5A_HUMAN	required for meiotic nuclear division 5 homolog	211										ovary(1)|skin(1)	2						ACAAATCAGCGAGAGGCATTA	0.368		NaN											0	0	0	0.005524	0	38	39				
ANKRD39	51239	broad.mit.edu	37	2	97514175	97514175	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr2:97514175C>T	uc002sxd.3	-	4	447	c.415G>A	c.(415-417)GAG>AAG	p.E139K		NM_016466	NP_057550	Q53RE8	ANR39_HUMAN	ankyrin repeat domain 39	139	ANK 4.										0						TGACCCCTCTCAGCAGCCTGT	0.582		NaN											0	0	0	0.00361	0	45	39				
AFF3	3899	broad.mit.edu	37	2	100199373	100199373	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr2:100199373C>T	uc002tag.2	-	16	2916	c.2680G>A	c.(2680-2682)GAG>AAG	p.E894K	AFF3_uc002taf.2_Missense_Mutation_p.E919K|AFF3_uc010fiq.1_Missense_Mutation_p.E894K|AFF3_uc010yvr.1_Missense_Mutation_p.E1047K|AFF3_uc002tah.1_Missense_Mutation_p.E919K	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	894					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						GTTAAGTCCTCGCTGGTGTAT	0.463		NaN											0	0	0	0.003214	0	47	44				
TTN	7273	broad.mit.edu	37	2	179612753	179612753	+	Missense_Mutation	SNP	C	C	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr2:179612753C>A	uc002unb.2	-	46	14598	c.14374G>T	c.(14374-14376)GCA>TCA	p.A4792S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAAATGCTGCCAACTCTGGT	0.458		NaN											1	0	3.73988e-18	0.00632	4.42442e-18	30	29				
CERKL	375298	broad.mit.edu	37	2	182413568	182413568	+	Silent	SNP	G	G	A	rs139270710		TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr2:182413568G>A	uc002unx.2	-	8	1091	c.990C>T	c.(988-990)GTC>GTT	p.V330V	CERKL_uc002uny.2_Silent_p.V304V|CERKL_uc010zfm.1_Silent_p.V286V|CERKL_uc002unz.2_Silent_p.V52V|CERKL_uc002uoa.2_Silent_p.V235V|CERKL_uc002uob.2_Silent_p.V52V|CERKL_uc002uoc.2_Silent_p.V191V|CERKL_uc010frk.2_RNA|CERKL_uc002uod.1_Silent_p.V99V|CERKL_uc002uoe.2_Silent_p.V304V|CERKL_uc002unw.2_5'Flank	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	330	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			TGCAGACGTCGACCAGCTGTA	0.428		NaN											0	0	0	0.003954	0	22	34				
KIF1A	547	broad.mit.edu	37	2	241726723	241726723	+	Missense_Mutation	SNP	T	T	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr2:241726723T>C	uc002vzy.2	-	5	520	c.374A>G	c.(373-375)GAC>GGC	p.D125G	KIF1A_uc010fzk.2_Missense_Mutation_p.D125G|KIF1A_uc002vzz.1_Missense_Mutation_p.D125G	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	125	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		AGAGAAGAGGTCCTCGCAGAG	0.657		NaN											0	0	0	0.002445	0	31	43				
SLC24A3	57419	broad.mit.edu	37	20	19701741	19701741	+	Missense_Mutation	SNP	A	A	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr20:19701741A>C	uc002wrl.2	+	17	2089	c.1892A>C	c.(1891-1893)AAC>ACC	p.N631T		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	631	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						ACTGAGTTCAACGTGTTCACC	0.582		NaN											0	0	0	0.00361	0	67	72				
ASXL1	171023	broad.mit.edu	37	20	31017811	31017811	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr20:31017811C>T	uc002wxs.2	+	7	1099	c.673C>T	c.(673-675)CAG>TAG	p.Q225*	ASXL1_uc010geb.2_Intron	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	225					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						CGAGGTCACCCAGGACCCTGC	0.687		NaN	F|N|Mis		MDS|CMML								0	0	0	0.00333	0	22	17				
RBPJL	11317	broad.mit.edu	37	20	43940948	43940948	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr20:43940948G>A	uc002xns.2	+	6	604	c.532G>A	c.(532-534)GGC>AGC	p.G178S	RBPJL_uc002xnt.2_Missense_Mutation_p.G178S	NM_014276	NP_055091	Q9UBG7	RBPJL_HUMAN	recombining binding protein L	178					signal transduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				gctgcgCGGGGGCCGGGAGCT	0.512		NaN											0	0	0	0.004007	0	16	24				
CSE1L	1434	broad.mit.edu	37	20	47707519	47707519	+	Missense_Mutation	SNP	C	C	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr20:47707519C>A	uc002xty.2	+	21	2459	c.2325C>A	c.(2323-2325)TTC>TTA	p.F775L	CSE1L_uc010zyg.1_Missense_Mutation_p.F558L|CSE1L_uc010ghx.2_Missense_Mutation_p.F719L|CSE1L_uc010ghy.2_Missense_Mutation_p.F396L|CSE1L_uc010zyh.1_Missense_Mutation_p.F424L	NM_001316	NP_001307	P55060	XPO2_HUMAN	CSE1 chromosome segregation 1-like protein	775					apoptosis|cell proliferation|intracellular protein transport	cytoplasm|nucleus	importin-alpha export receptor activity			large_intestine(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000491)|Colorectal(8;0.198)			TTCTGCTATTCCAGAGACTTC	0.308		NaN											1	0	1.61788e-16	0.002445	1.9055e-16	16	62				
CSE1L	1434	broad.mit.edu	37	20	47707529	47707529	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr20:47707529C>T	uc002xty.2	+	21	2469	c.2335C>T	c.(2335-2337)CAG>TAG	p.Q779*	CSE1L_uc010zyg.1_Nonsense_Mutation_p.Q562*|CSE1L_uc010ghx.2_Nonsense_Mutation_p.Q723*|CSE1L_uc010ghy.2_Nonsense_Mutation_p.Q400*|CSE1L_uc010zyh.1_Nonsense_Mutation_p.Q428*	NM_001316	NP_001307	P55060	XPO2_HUMAN	CSE1 chromosome segregation 1-like protein	779					apoptosis|cell proliferation|intracellular protein transport	cytoplasm|nucleus	importin-alpha export receptor activity			large_intestine(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000491)|Colorectal(8;0.198)			CCAGAGACTTCAGAATTCCAA	0.303		NaN											0	0	0	0.001786	0	20	56				
CSE1L	1434	broad.mit.edu	37	20	47707558	47707558	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr20:47707558G>A	uc002xty.2	+	21	2498	c.2364G>A	c.(2362-2364)AAG>AAA	p.K788K	CSE1L_uc010zyg.1_Silent_p.K571K|CSE1L_uc010ghx.2_Silent_p.K732K|CSE1L_uc010ghy.2_Silent_p.K409K|CSE1L_uc010zyh.1_Silent_p.K437K	NM_001316	NP_001307	P55060	XPO2_HUMAN	CSE1 chromosome segregation 1-like protein	788					apoptosis|cell proliferation|intracellular protein transport	cytoplasm|nucleus	importin-alpha export receptor activity			large_intestine(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000491)|Colorectal(8;0.198)			AGTTTATCAAGAGTAAGTAAA	0.308		NaN											0	0	0	0.003954	0	12	45				
DSCR3	10311	broad.mit.edu	37	21	38600636	38600636	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr21:38600636G>A	uc002ywf.1	-	7	785	c.546C>T	c.(544-546)CTC>CTT	p.L182L	DSCR3_uc010gnm.1_RNA|DSCR3_uc010gnn.1_Silent_p.L140L|DSCR3_uc010gnl.2_Silent_p.L155L|DSCR3_uc011aeg.1_Silent_p.L105L|DSCR3_uc011aeh.1_Silent_p.L57L	NM_006052	NP_006043	O14972	DSCR3_HUMAN	Down syndrome critical region protein 3	182					vacuolar transport	nucleus|retromer complex					0						TTGTTGAGTTGAGATGTCCTC	0.507		NaN											0	0	0	0.001786	0	28	39				
CECR2	27443	broad.mit.edu	37	22	18031822	18031822	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr22:18031822G>C	uc010gqw.1	+	17	4444	c.4318G>C	c.(4318-4320)GAT>CAT	p.D1440H	CECR2_uc010gqv.1_Missense_Mutation_p.D1298H|CECR2_uc002zml.2_Missense_Mutation_p.D1299H|CECR2_uc002zmo.2_RNA	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	1482					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		ACTTCCCCTGGATCAGGTAAG	0.498		NaN											0	0	0	0.003954	0	24	29				
DGCR8	54487	broad.mit.edu	37	22	20073687	20073687	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr22:20073687C>T	uc002zri.2	+	2	551	c.201C>T	c.(199-201)TTC>TTT	p.F67F	DGCR8_uc010grz.2_Silent_p.F67F|DGCR8_uc002zrj.2_5'Flank	NM_022720	NP_073557	Q8WYQ5	DGCR8_HUMAN	DiGeorge syndrome critical region gene 8	67	Necessary for nuclear localization and retention.|Necessary for interaction with NCL.				primary miRNA processing	cytoplasm|cytoplasm|microtubule cytoskeleton|nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding				0	Colorectal(54;0.0993)					AGGACCCCTTCAACTTCTACG	0.597		NaN											0	0	0	0.00361	0	50	56				
CYTSA	23384	broad.mit.edu	37	22	24717883	24717883	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr22:24717883C>T	uc002zzw.2	+	5	1242	c.935C>T	c.(934-936)TCT>TTT	p.S312F	CYTSA_uc002zzv.3_Missense_Mutation_p.S312F|CYTSA_uc011ajq.1_Missense_Mutation_p.S312F	NM_015330	NP_056145	Q69YQ0	CYTSA_HUMAN	cytospin A	312					cell cycle|cell division						0						ACTCTGACTTCTTCAGTGGAA	0.478		NaN											0	0	0	0.00361	0	45	56				
CYTSA	23384	broad.mit.edu	37	22	24718351	24718351	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr22:24718351C>T	uc002zzw.2	+	5	1710	c.1403C>T	c.(1402-1404)TCT>TTT	p.S468F	CYTSA_uc002zzv.3_Missense_Mutation_p.S468F|CYTSA_uc011ajq.1_Missense_Mutation_p.S468F	NM_015330	NP_056145	Q69YQ0	CYTSA_HUMAN	cytospin A	468					cell cycle|cell division						0						TACTTCCGCTCTCTTCTAGAT	0.408		NaN											0	0	0	0.00361	0	65	70				
DEPDC5	9681	broad.mit.edu	37	22	32160960	32160960	+	Splice_Site	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr22:32160960G>A	uc003als.2	+	5	336	c.194_splice	c.e5-1	p.E65_splice	DEPDC5_uc011als.1_Splice_Site_p.E65_splice|DEPDC5_uc011alu.1_Splice_Site_p.E65_splice|DEPDC5_uc011alv.1_Splice_Site|DEPDC5_uc003alt.2_Splice_Site_p.E65_splice|DEPDC5_uc003alr.1_Splice_Site_p.E65_splice|DEPDC5_uc011alt.1_Splice_Site_p.E65_splice	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1						intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						TTCTGTTTTAGAAACTATCAG	0.363		NaN											0	0	0	0.001984	0	6	88				
CNTN6	27255	broad.mit.edu	37	3	1424976	1424976	+	Splice_Site	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr3:1424976G>C	uc003boz.2	+	19	2669	c.2402_splice	c.e19-1	p.E801_splice	CNTN6_uc011asj.1_Splice_Site_p.E729_splice|CNTN6_uc003bpa.2_Splice_Site_p.E801_splice	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor						axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		CTGGATGGTAGAACCTCAACT	0.428		NaN											0	0	0	0.00361	0	91	135				
ROBO2	6092	broad.mit.edu	37	3	77614213	77614213	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr3:77614213G>A	uc003dpy.3	+	12	2434	c.1791G>A	c.(1789-1791)GCG>GCA	p.A597A	ROBO2_uc003dpz.2_Silent_p.A601A|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.A601A	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	597	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TGGTCAGAGCGATCAACCCCC	0.498		NaN											0	0	0	0.00361	0	57	70				
RAB7A	7879	broad.mit.edu	37	3	128525358	128525358	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr3:128525358C>T	uc003eks.1	+	4	556	c.324C>T	c.(322-324)ATC>ATT	p.I108I	RAB7A_uc010hsv.1_Intron|RAB7A_uc003ekt.2_Silent_p.I84I	NM_004637	NP_004628	P51149	RAB7A_HUMAN	RAB7, member RAS oncogene family	108				I -> V (in Ref. 2; AAA86640).	endocytosis|endosome to lysosome transport|epidermal growth factor catabolic process|protein transport|small GTPase mediated signal transduction	Golgi apparatus|late endosome|lysosome|melanosome|phagocytic vesicle	GDP binding|GTP binding|GTPase activity|protein binding				0				GBM - Glioblastoma multiforme(114;0.231)		AGTTTCTCATCCAGGCCAGTC	0.458		NaN											0	0	0	0.005524	0	37	42				
IGSF10	285313	broad.mit.edu	37	3	151166216	151166216	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr3:151166216C>G	uc011bod.1	-	4	1553	c.1553G>C	c.(1552-1554)AGA>ACA	p.R518T		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	518	Ig-like C2-type 1.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ATAAGGGGCTCTCACTTTACT	0.498		NaN											0	0	0	0.00361	0	103	108				
IGSF10	285313	broad.mit.edu	37	3	151166508	151166508	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr3:151166508C>G	uc011bod.1	-	4	1261	c.1261G>C	c.(1261-1263)GAT>CAT	p.D421H		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	421					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCTCTGAGATCTGCCTCTATG	0.438		NaN											0	0	0	0.004289	0	37	35				
FGFR3	2261	broad.mit.edu	37	4	1803568	1803568	+	Missense_Mutation	SNP	C	C	G	rs121913483		TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08			C	G	C	C		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:1803568C>G	uc003gdr.3	+	7	1002	c.746C>G	c.(745-747)TCC>TGC	p.S249C	FGFR3_uc003gdu.2_Missense_Mutation_p.S249C|FGFR3_uc003gds.3_Missense_Mutation_p.S249C|FGFR3_uc003gdq.3_Missense_Mutation_p.S249C|FGFR3_uc010icb.1_Missense_Mutation_p.S91C|FGFR3_uc003gdt.1_Missense_Mutation_p.S91C	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	249	Extracellular (Potential).		S -> C (in KERSEB, bladder cancer, cervical cancer and TD1).		bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding	p.S249C(1368)|p.R248_S249insC(2)|p.S249T(1)|p.R248_S249del(1)		urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	ACAGAGCGCTCCCCGCACCGG	0.562		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				0	0	0	0.001523	0	16	19		Valid		
RGS12	6002	broad.mit.edu	37	4	3416499	3416499	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:3416499C>T	uc003ggw.2	+	6	3115	c.2211C>T	c.(2209-2211)TTC>TTT	p.F737F	RGS12_uc003ggu.2_Silent_p.F737F|RGS12_uc010ics.1_5'UTR|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Silent_p.F737F|RGS12_uc003ggy.1_Silent_p.F135F|RGS12_uc010ict.1_Silent_p.F89F|RGS12_uc003ggz.2_Silent_p.F89F|RGS12_uc010icu.1_5'UTR|RGS12_uc011bvs.1_Silent_p.F79F|RGS12_uc003gha.2_Silent_p.F79F|RGS12_uc010icv.2_5'UTR|RGS12_uc003ghb.2_5'UTR	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	737	RGS.					condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GGAAAGAATTCAGTGAAGAAA	0.413		NaN											0	0	0	0.00361	0	48	169				
WDR1	9948	broad.mit.edu	37	4	10100690	10100690	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:10100690G>A	uc003gmf.2	-	4	586	c.303C>T	c.(301-303)TTC>TTT	p.F101F	WDR1_uc003gmg.2_Intron	NM_017491	NP_059830	O75083	WDR1_HUMAN	WD repeat-containing protein 1 isoform 1	101	WD 2.				platelet activation|platelet degranulation|sensory perception of sound	cytoskeleton|cytosol|extracellular region	actin binding			ovary(2)|pancreas(1)	3				STAD - Stomach adenocarcinoma(129;0.000703)|Colorectal(103;0.0057)|LUSC - Lung squamous cell carcinoma(721;0.0232)		TCTTCCCAGCGAAAGGCTGGT	0.577		NaN											0	0	0	0.00361	0	74	75				
HS3ST1	9957	broad.mit.edu	37	4	11401132	11401132	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:11401132C>T	uc003gmq.2	-	2	821	c.498G>A	c.(496-498)CAG>CAA	p.Q166Q		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	166						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						GCTTGTGCTTCTGCATGTGGT	0.587		NaN											0	0	0	0.00361	0	43	53				
SHROOM3	57619	broad.mit.edu	37	4	77675497	77675497	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:77675497G>C	uc011cbx.1	+	7	4814	c.3861G>C	c.(3859-3861)GAG>GAC	p.E1287D	SHROOM3_uc003hkg.2_Missense_Mutation_p.E1065D	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1287					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GCCAAGAAGAGATGCTGCCGC	0.547		NaN											0	0	0	0.00361	0	81	113				
TIGD2	166815	broad.mit.edu	37	4	90034853	90034853	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:90034853C>G	uc003hsk.2	+	1	886	c.728C>G	c.(727-729)TCA>TGA	p.S243*	FAM13A_uc003hsh.1_5'Flank	NM_145715	NP_663761	Q4W5G0	TIGD2_HUMAN	tigger transposable element derived 2	243	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.86e-05)		ACTGACCTTTCAAACCTTCCT	0.423		NaN											0	0	0	0.008361	0	30	32				
MTTP	4547	broad.mit.edu	37	4	100510816	100510816	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:100510816C>G	uc003hvc.3	+	5	666	c.410C>G	c.(409-411)TCA>TGA	p.S137*	MTTP_uc011cej.1_Nonsense_Mutation_p.S164*	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	137	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	GAGTTCTACTCATATCAAAAT	0.418		NaN											0	0	0	0.007413	0	16	18				
TRPC3	7222	broad.mit.edu	37	4	122831316	122831316	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:122831316G>A	uc003ieg.2	-	6	1859	c.1785C>T	c.(1783-1785)TTC>TTT	p.F595F	TRPC3_uc010inr.2_Silent_p.F467F|TRPC3_uc003ief.2_Silent_p.F522F|TRPC3_uc011cgl.1_Silent_p.F259F	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	510	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TACCATAAGTGAAATACTGTA	0.438		NaN											0	0	0	0.002096	0	31	56				
BBS12	166379	broad.mit.edu	37	4	123664339	123664339	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:123664339G>A	uc003ieu.2	+	2	1485	c.1292G>A	c.(1291-1293)CGG>CAG	p.R431Q		NM_152618	NP_689831	Q6ZW61	BBS12_HUMAN	Bardet-Biedl syndrome 12	431					cellular protein metabolic process	cilium	ATP binding			ovary(2)	2						AACAGTAAGCGGTTGGTAATC	0.443		NaN							Bardet-Biedl_syndrome				0	0	0	0.00361	0	50	44				
GAB1	2549	broad.mit.edu	37	4	144361407	144361407	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:144361407G>A	uc003ije.2	+	6	1816	c.1457G>A	c.(1456-1458)GGA>GAA	p.G486E	GAB1_uc003ijd.2_Missense_Mutation_p.G486E|GAB1_uc011chq.1_Missense_Mutation_p.G383E	NM_002039	NP_002030	Q13480	GAB1_HUMAN	GRB2-associated binding protein 1 isoform b	486	Pro-rich.				cell proliferation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			breast(2)|lung(1)|skin(1)	4	all_hematologic(180;0.158)					TCCTCATTTGGAATGCAAGTT	0.483		NaN											0	0	0	0.003214	0	47	35				
ZNF827	152485	broad.mit.edu	37	4	146686180	146686180	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:146686180C>G	uc003ikn.2	-	13	3238	c.3190G>C	c.(3190-3192)GAG>CAG	p.E1064Q	ZNF827_uc003ikm.2_Missense_Mutation_p.E1064Q|ZNF827_uc010iox.2_Missense_Mutation_p.E714Q|ZNF827_uc003ikl.2_Missense_Mutation_p.E149Q	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	1064	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					TTCTTATGCTCCAGCAGCTGT	0.483		NaN											0	0	0	0.004672	0	3	162				
DDX60	55601	broad.mit.edu	37	4	169196559	169196559	+	Silent	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:169196559C>T	uc003irp.2	-	16	2533	c.2241G>A	c.(2239-2241)TTG>TTA	p.L747L		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	747							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		CATCTCGTATCAAATAATGGC	0.403		NaN											0	0	0	0.002096	0	30	26				
GALNT7	51809	broad.mit.edu	37	4	174169341	174169341	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:174169341C>G	uc003isz.3	+	2	420	c.337C>G	c.(337-339)CTC>GTC	p.L113V		NM_017423	NP_059119	Q86SF2	GALT7_HUMAN	polypeptide N-acetylgalactosaminyltransferase 7	113	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(1)	1		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;1.87e-18)|Epithelial(43;3.44e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-09)|STAD - Stomach adenocarcinoma(60;0.0019)|GBM - Glioblastoma multiforme(59;0.0119)|LUSC - Lung squamous cell carcinoma(193;0.0199)		GAGGCAGTATCTCACATTTAA	0.463		NaN											0	0	0	0.001786	0	32	40				
ASB5	140458	broad.mit.edu	37	4	177143510	177143510	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:177143510C>G	uc003iuq.1	-	3	354	c.338G>C	c.(337-339)GGA>GCA	p.G113A	ASB5_uc003iup.1_Missense_Mutation_p.G60A	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	113	ANK 2.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		CACGTGATCTCCAAGGCAGGC	0.423		NaN											0	0	0	0.001786	0	30	31				
FAT1	2195	broad.mit.edu	37	4	187518864	187518864	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr4:187518864G>A	uc003izf.2	-	24	12528	c.12340C>T	c.(12340-12342)CAG>TAG	p.Q4114*	FAT1_uc010isn.2_5'Flank|FAT1_uc003ize.2_5'Flank	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4114	Extracellular (Potential).|EGF-like 4.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GAATCACACTGACAAACGGCG	0.428		NaN								HNSCC(5;0.00058)			0	0	0	0.003954	0	23	29				
RASGRF2	5924	broad.mit.edu	37	5	80422929	80422929	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr5:80422929C>T	uc003kha.1	+	17	2633	c.2633C>T	c.(2632-2634)CCG>CTG	p.P878L	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	878					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		TCTGTTTCACCGGCTTCTGCT	0.448		NaN											0	0	0	0.003954	0	25	41				
GDF9	2661	broad.mit.edu	37	5	132200111	132200111	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr5:132200111C>T	uc003kxz.1	-	1	367	c.115G>A	c.(115-117)GAG>AAG	p.E39K	GDF9_uc011cxj.1_Intron|UQCRQ_uc003kya.1_5'Flank	NM_005260	NP_005251	O60383	GDF9_HUMAN	growth differentiation factor 9 precursor	39					female gamete generation|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			skin(1)	1		all_cancers(142;0.105)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GATTCCAACTCAGCACTAGCA	0.502		NaN											0	0	0	0.00361	0	56	61				
PCDHB14	56122	broad.mit.edu	37	5	140604577	140604577	+	Silent	SNP	C	C	A	rs142260227		TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr5:140604577C>A	uc003ljb.2	+	1	1500	c.1500C>A	c.(1498-1500)CTC>CTA	p.L500L	PCDHB14_uc011dal.1_Silent_p.L347L	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	500	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCTGCCCCTCGCCTCCTTGG	0.652		NaN											1	0	3.06722e-38	0.00361	3.7285e-38	93	91				
PCDHGA4	56111	broad.mit.edu	37	5	140734986	140734986	+	Missense_Mutation	SNP	G	G	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr5:140734986G>T	uc003ljq.1	+	1	219	c.219G>T	c.(217-219)CAG>CAT	p.Q73H	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.Q73H	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	73	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTAGGACGCAGCTTTTCGCCC	0.637		NaN											1	0	0.00198382	0.001984	0.00227581	7	115				
PCDHGB3	56102	broad.mit.edu	37	5	140750327	140750327	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr5:140750327G>A	uc003ljw.1	+	1	366	c.366G>A	c.(364-366)CTG>CTA	p.L122L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Silent_p.L122L	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	122	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAACTGTGCTGATCCAGGATA	0.443		NaN											0	0	0	0.00361	0	127	107				
PCDHGB7	56099	broad.mit.edu	37	5	140798486	140798486	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr5:140798486G>C	uc003lkn.1	+	1	1205	c.1060G>C	c.(1060-1062)GAT>CAT	p.D354H	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkm.2_Missense_Mutation_p.D354H|PCDHGA11_uc003lko.1_5'Flank|PCDHGA11_uc003lkp.1_5'Flank|PCDHGA11_uc003lkq.1_5'Flank	NM_018927	NP_061750	Q9Y5F8	PCDGJ_HUMAN	protocadherin gamma subfamily B, 7 isoform 1	354	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCACTCTCTGATCAGATTAT	0.463		NaN											0	0	0	0.008361	0	26	26				
ODZ2	57451	broad.mit.edu	37	5	167553852	167553852	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr5:167553852G>A	uc010jjd.2	+	12	2303	c.2303G>A	c.(2302-2304)CGC>CAC	p.R768H	ODZ2_uc003lzr.3_Missense_Mutation_p.R536H|ODZ2_uc003lzt.3_Missense_Mutation_p.R132H|ODZ2_uc010jje.2_Missense_Mutation_p.R39H|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TGTGACCAGCGCGTGTGCCAC	0.602		NaN											0	0	0	0.003163	0	14	7				
STK10	6793	broad.mit.edu	37	5	171471888	171471888	+	Nonstop_Mutation	SNP	A	A	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr5:171471888A>C	uc003mbo.1	-	19	3205	c.2905T>G	c.(2905-2907)TAA>GAA	p.*969E		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	969							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GGCGGTTGTTAAGAAGCATCC	0.592		NaN											0	0	0	0.00361	0	47	52				
OR2V2	285659	broad.mit.edu	37	5	180582343	180582343	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr5:180582343C>T	uc011dhj.1	+	1	401	c.401C>T	c.(400-402)CCC>CTC	p.P134L		NM_206880	NP_996763	Q96R30	OR2V2_HUMAN	olfactory receptor, family 2, subfamily V,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.P134T(1)		ovary(1)|central_nervous_system(1)	2	all_cancers(89;8.26e-06)|all_epithelial(37;1.02e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.0103)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0652)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTTCACTATCCCATCCTCATG	0.502		NaN											0	0	0	0.00361	0	56	72				
TRIM7	81786	broad.mit.edu	37	5	180625764	180625764	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr5:180625764G>C	uc003mmz.1	-	5	981	c.914C>G	c.(913-915)TCT>TGT	p.S305C	TRIM7_uc003mmv.1_Missense_Mutation_p.S123C|TRIM7_uc003mmw.1_Missense_Mutation_p.S97C|TRIM7_uc003mmx.1_Missense_Mutation_p.S97C|TRIM7_uc003mmy.1_Missense_Mutation_p.S97C	NM_203293	NP_976038	Q9C029	TRIM7_HUMAN	tripartite motif-containing 7 isoform 1	305						cytoplasm|nucleus	zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;6.03e-06)|all_epithelial(37;7.1e-07)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.000172)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;2e-06)|Epithelial(171;1.35e-05)|OV - Ovarian serous cystadenocarcinoma(192;0.000128)|Kidney(146;0.0674)|GBM - Glioblastoma multiforme(465;0.0802)		CTTCATCTCAGAAGAGACTGT	0.527		NaN											0	0	0	0.004007	0	15	22				
KIF13A	63971	broad.mit.edu	37	6	17777582	17777582	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr6:17777582C>T	uc003ncg.3	-	34	4201	c.4096G>A	c.(4096-4098)GTC>ATC	p.V1366I	KIF13A_uc003ncf.2_Missense_Mutation_p.V1353I|KIF13A_uc003nch.3_Missense_Mutation_p.V1366I|KIF13A_uc003nci.3_Missense_Mutation_p.V1353I|KIF13A_uc003nce.1_5'UTR	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	1366					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			TTGACTGTGACGGCCTGTAAA	0.294		NaN											0	0	0	0.000248	0	4	28				
RPS18	6222	broad.mit.edu	37	6	33243640	33243640	+	Missense_Mutation	SNP	G	G	A	rs3208874		TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr6:33243640G>A	uc003odp.1	+	3	214	c.169G>A	c.(169-171)GGA>AGA	p.G57R	RPS18_uc010jum.1_RNA|RPS18_uc003odq.1_RNA|B3GALT4_uc003odr.2_5'Flank	NM_022551	NP_072045	P62269	RS18_HUMAN	ribosomal protein S18	57					endocrine pancreas development|ribosome biogenesis|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	rRNA binding|structural constituent of ribosome				0						CAAGAGGGCGGGAGAACTCAC	0.552		NaN											0	0	0	0.000248	0	4	152				
RPL7L1	285855	broad.mit.edu	37	6	42848633	42848633	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr6:42848633C>G	uc003osq.1	+	2	54	c.49C>G	c.(49-51)CTG>GTG	p.L17V	RPL7L1_uc011dux.1_Missense_Mutation_p.L17V|RPL7L1_uc010jxw.1_Intron|RPL7L1_uc003osr.1_5'UTR|RPL7L1_uc011duy.1_Missense_Mutation_p.L17V|RPL7L1_uc003oss.1_Intron|RPL7L1_uc003ost.2_Missense_Mutation_p.L17V|RPL7L1_uc003osu.2_RNA	NM_198486	NP_940888	Q6DKI1	RL7L_HUMAN	ribosomal protein L7-like 1	17					translation	large ribosomal subunit	protein binding|structural constituent of ribosome				0	Colorectal(47;0.196)		Colorectal(64;0.00237)|all cancers(41;0.00288)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.088)			AGAAAATCTCCTGAAAAAGAG	0.378		NaN											0	0	0	0.00874	0	40	27				
MEP1A	4224	broad.mit.edu	37	6	46806751	46806751	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr6:46806751G>T	uc010jzh.1	+	14	2161	c.2119G>T	c.(2119-2121)GAG>TAG	p.E707*	MEP1A_uc011dwg.1_Nonsense_Mutation_p.E429*|MEP1A_uc011dwh.1_Nonsense_Mutation_p.E735*|MEP1A_uc011dwi.1_Nonsense_Mutation_p.E607*	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	707	EGF-like.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			CTACACGGGGGAGCGCTGTCA	0.587		NaN											1	0	2.61895e-37	0.00361	3.16905e-37	82	87				
ENPP3	5169	broad.mit.edu	37	6	131971180	131971180	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr6:131971180G>A	uc003qcu.3	+	4	515	c.168G>A	c.(166-168)AAG>AAA	p.K56K	ENPP3_uc010kfn.1_RNA|ENPP3_uc011ecc.1_Silent_p.K22K|ENPP3_uc010kfo.1_RNA|ENPP3_uc010kfp.1_RNA|ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Silent_p.K56K	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	56	Extracellular (Potential).|SMB 1.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		GCTGCAGGAAGAAGTGCTTTG	0.463		NaN											0	0	0	0.00623	0	41	55				
TAAR6	319100	broad.mit.edu	37	6	132891943	132891943	+	Silent	SNP	C	C	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr6:132891943C>A	uc011eck.1	+	1	483	c.483C>A	c.(481-483)CTC>CTA	p.L161L		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	161	Helical; Name=4; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		TCCTGCCCCTCATGTACAGCG	0.502		NaN											1	0	2.98797e-67	0.00361	3.6489e-67	155	154				
TAB2	23118	broad.mit.edu	37	6	149700620	149700620	+	Silent	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr6:149700620G>C	uc003qmj.2	+	3	1747	c.1569G>C	c.(1567-1569)CTG>CTC	p.L523L	TAB2_uc011eec.1_Silent_p.L491L|TAB2_uc010kia.1_Silent_p.L523L|TAB2_uc010kib.1_Silent_p.L523L|TAB2_uc003qmk.3_RNA	NM_015093	NP_055908	Q9NYJ8	TAB2_HUMAN	mitogen-activated protein kinase kinase kinase 7	523					activation of MAPK activity|heart development|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	K63-linked polyubiquitin binding|zinc ion binding				0						CACGGAAACTGAGTATGGGAT	0.413		NaN											0	0	0	0.003271	0	35	31				
HOXA2	3199	broad.mit.edu	37	7	27140803	27140803	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr7:27140803C>T	uc003syh.2	-	2	948	c.673G>A	c.(673-675)GAG>AAG	p.E225K		NM_006735	NP_006726	O43364	HXA2_HUMAN	homeobox A2	225						nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TCCTCGTCCTCCTCTACTTTC	0.517		NaN											0	0	0	0.00361	0	47	44				
TNS3	64759	broad.mit.edu	37	7	47453569	47453569	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr7:47453569G>C	uc003tnv.2	-	12	980	c.613C>G	c.(613-615)CAA>GAA	p.Q205E	TNS3_uc003tnw.2_Missense_Mutation_p.Q205E|TNS3_uc010kyo.1_Missense_Mutation_p.Q205E	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	205	C2 tensin-type.					focal adhesion	protein binding			ovary(4)	4						TGCATGGCTTGGTAGAGCTTC	0.473		NaN											0	0	0	0.00361	0	61	84				
ZPBP	11055	broad.mit.edu	37	7	50023061	50023061	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr7:50023061G>A	uc003tou.2	-	7	908	c.838C>T	c.(838-840)CGT>TGT	p.R280C	ZPBP_uc011kci.1_Missense_Mutation_p.R206C|ZPBP_uc010kyw.2_Missense_Mutation_p.R279C	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	280					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					TGTTCTGCACGTCTGCCAAGA	0.323		NaN											0	0	0	0.00333	0	26	20				
PCLO	27445	broad.mit.edu	37	7	82785410	82785410	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr7:82785410C>T	uc003uhx.2	-	2	836	c.547G>A	c.(547-549)GAG>AAG	p.E183K	PCLO_uc003uhv.2_Missense_Mutation_p.E183K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	183					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGGATGCCTCAGAGTCTGAT	0.418		NaN											0	0	0	0.002096	0	29	30				
PSMC2	5701	broad.mit.edu	37	7	103003152	103003152	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr7:103003152C>G	uc003vbs.2	+	6	512	c.442C>G	c.(442-444)CAA>GAA	p.Q148E	SLC26A5_uc003vbt.1_Intron|SLC26A5_uc003vbu.1_Intron|SLC26A5_uc003vbv.1_Intron|PSMC2_uc011klo.1_Missense_Mutation_p.Q11E	NM_002803	NP_002794	P35998	PRS7_HUMAN	proteasome 26S ATPase subunit 2	148					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding				0						AAATAAATATCAAATTCACAT	0.333		NaN											0	0	0	0.00361	0	52	4				
ST7	7982	broad.mit.edu	37	7	116849888	116849888	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr7:116849888G>A	uc003vin.2	+	13	1516	c.1302G>A	c.(1300-1302)CTG>CTA	p.L434L	ST7_uc011knl.1_Silent_p.L411L|ST7_uc003vio.2_Silent_p.L411L|ST7_uc003viq.2_Silent_p.L388L|ST7_uc011knm.1_Silent_p.L391L|ST7_uc003vir.2_Silent_p.L359L|ST7_uc011knn.1_Silent_p.L382L|ST7OT3_uc003viy.1_RNA	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	434						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		AACATATCCTGAAGAGAGGAG	0.388		NaN											0	0	0	0.000248	0	4	33				
STC1	6781	broad.mit.edu	37	8	23709043	23709043	+	Missense_Mutation	SNP	C	C	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr8:23709043C>A	uc003xdw.1	-	3	547	c.263G>T	c.(262-264)GGA>GTA	p.G88V		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	88					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		GAATGCTTTTCCCTGCCATGG	0.507		NaN											1	0	4.36969e-10	0.001855	5.12375e-10	12	21				
PXDNL	137902	broad.mit.edu	37	8	52321351	52321351	+	Missense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr8:52321351C>T	uc003xqu.3	-	17	2934	c.2833G>A	c.(2833-2835)GCG>ACG	p.A945T	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	945					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TCCTGTCGCGCGCACTCGGTG	0.647		NaN											0	0	0	0.000978	0	12	19				
TMEM68	137695	broad.mit.edu	37	8	56675387	56675387	+	Silent	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr8:56675387G>C	uc003xsg.1	-	1	201	c.132C>G	c.(130-132)CTC>CTG	p.L44L	TMEM68_uc003xsh.1_Silent_p.L44L|TMEM68_uc003xsi.1_Silent_p.L44L	NM_152417	NP_689630	Q96MH6	TMM68_HUMAN	transmembrane protein 68	44						integral to membrane	acyltransferase activity			skin(1)	1			Epithelial(17;0.000361)|all cancers(17;0.00326)			AAACCCACAAGAGATAGTTTG	0.338		NaN											0	0	0	0.00499	0	16	27				
EXT1	2131	broad.mit.edu	37	8	118842578	118842578	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr8:118842578G>A	uc003yok.1	-	4	1948	c.1175C>T	c.(1174-1176)ACA>ATA	p.T392I		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	392	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			AGACCTGATTGTAGAAGGAAT	0.353		NaN	Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome				0	0	0	0.004007	0	16	24				
C8orf76	84933	broad.mit.edu	37	8	124253503	124253503	+	Silent	SNP	G	G	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr8:124253503G>T	uc003yqc.1	-	1	115	c.84C>A	c.(82-84)CCC>CCA	p.P28P	C8orf76_uc003yqd.2_Intron	NM_032847	NP_116236	Q96K31	CH076_HUMAN	hypothetical protein LOC84933	28							binding			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			AGTAGGACGCGGGCGGTCCTG	0.557		NaN											1	0	7.48243e-07	0.006214	8.69668e-07	10	9				
SLC1A1	6505	broad.mit.edu	37	9	4585317	4585317	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr9:4585317G>A	uc003zij.1	+	12	1570	c.1334G>A	c.(1333-1335)CGG>CAG	p.R445Q	C9orf68_uc003zik.2_Intron	NM_004170	NP_004161	P43005	EAA3_HUMAN	solute carrier family 1, member 1	445					D-aspartate import|L-glutamate import|synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0		Acute lymphoblastic leukemia(2;0.0359)|Breast(48;0.0457)		GBM - Glioblastoma multiforme(50;0.0124)|Lung(218;0.183)	L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)	CCCAGGGACCGGTTCAGGACC	0.507		NaN											0	0	0	0.002096	0	30	59				
ZDHHC21	340481	broad.mit.edu	37	9	14674276	14674276	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr9:14674276G>A	uc003zli.2	-	4	533	c.63C>T	c.(61-63)GTC>GTT	p.V21V	ZDHHC21_uc003zlg.1_Intron	NM_178566	NP_848661	Q8IVQ6	ZDH21_HUMAN	zinc finger, DHHC-type containing 21	21	Helical; (Potential).				nitric oxide metabolic process|regulation of nitric-oxide synthase activity	Golgi membrane|integral to membrane	palmitoyltransferase activity|zinc ion binding				0				GBM - Glioblastoma multiforme(50;4.31e-06)		ACCAAACAAAGACAATCAAAC	0.378		NaN											0	0	0	0.004672	0	3	45				
PSIP1	11168	broad.mit.edu	37	9	15468842	15468842	+	Splice_Site	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr9:15468842C>G	uc003zlv.3	-	14	1537	c.1207_splice	c.e14-1	p.I403_splice	PSIP1_uc003zlw.3_Splice_Site_p.I403_splice	NM_033222	NP_150091	O75475	PSIP1_HUMAN	PC4 and SFRS1 interacting protein 1 isoform 2						initiation of viral infection|interspecies interaction between organisms|nuclear mRNA 5'-splice site recognition|provirus integration|regulation of transcription, DNA-dependent|response to heat|response to oxidative stress|transcription, DNA-dependent	cytosol|nuclear heterochromatin|nuclear periphery|nucleoplasm|nucleoplasm|transcriptionally active chromatin	activating transcription factor binding|chromatin binding|DNA secondary structure binding|RNA polymerase II transcription coactivator activity			breast(1)	1				GBM - Glioblastoma multiforme(50;2.38e-06)		ATCGCCGTATCTGAGAAAACA	0.299		NaN											0	0	0	0.008871	0	20	3				
FAM189A2	9413	broad.mit.edu	37	9	71990748	71990748	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr9:71990748C>T	uc010mon.1	+	4	324	c.220C>T	c.(220-222)CAG>TAG	p.Q74*	FAM189A2_uc004ahg.2_Nonsense_Mutation_p.Q74*|FAM189A2_uc010moo.1_5'UTR	NM_001127608	NP_001121080	Q15884	F1892_HUMAN	chromosome 9 open reading frame 61 precursor	74						integral to membrane					0						CTTTCCGGTTCAGCCCTGTAG	0.463		NaN											0	0	0	0.00361	0	57	4				
HSD17B3	3293	broad.mit.edu	37	9	98997817	98997817	+	Missense_Mutation	SNP	G	G	C			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr9:98997817G>C	uc004awa.1	-	11	906	c.858C>G	c.(856-858)TTC>TTG	p.F286L	HSD17B3_uc010msc.1_Missense_Mutation_p.F236L	NM_000197	NP_000188	P37058	DHB3_HUMAN	estradiol 17 beta-dehydrogenase 3	286					androgen biosynthetic process|male genitalia development	endoplasmic reticulum membrane|microsome	binding|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity				0		Acute lymphoblastic leukemia(62;0.0171)|all_hematologic(171;0.214)			NADH(DB00157)	CACCGCTGTAGAAGGCCCAGG	0.537		NaN											0	0	0	0.001882	0	18	0				
CXorf38	159013	broad.mit.edu	37	X	40506339	40506339	+	Missense_Mutation	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chrX:40506339G>A	uc004dew.2	-	2	276	c.271C>T	c.(271-273)CAT>TAT	p.H91Y	CXorf38_uc011mko.1_Intron|CXorf38_uc004dev.1_5'UTR|CXorf38_uc010nhd.2_RNA	NM_144970	NP_659407	Q8TB03	CX038_HUMAN	hypothetical protein LOC159013	91										ovary(1)	1						CTGTTGACATGATGTCTCAAA	0.632		NaN											0	0	0	0.005443	0	27	0				
HUWE1	10075	broad.mit.edu	37	X	53631583	53631583	+	Missense_Mutation	SNP	G	G	C	rs141644800		TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chrX:53631583G>C	uc004dsp.2	-	26	3111	c.2709C>G	c.(2707-2709)ATC>ATG	p.I903M		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	903					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						CAAACATCATGATGTAGGCAT	0.473		NaN											0	0	0	0.003271	0	34	0				
IL2RG	3561	broad.mit.edu	37	X	70327696	70327696	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chrX:70327696C>G	uc004dyw.1	-	8	1014	c.1000G>C	c.(1000-1002)GAG>CAG	p.E334Q	CXorf65_uc011mpo.1_5'Flank|CXorf65_uc011mpp.1_5'Flank|IL2RG_uc004dyv.1_Missense_Mutation_p.E63Q|IL2RG_uc004dyx.1_Missense_Mutation_p.E144Q	NM_000206	NP_000197	P31785	IL2RG_HUMAN	interleukin 2 receptor, gamma precursor	334	Cytoplasmic (Potential).				immune response|interleukin-4-mediated signaling pathway|interspecies interaction between organisms	external side of plasma membrane|integral to plasma membrane	cytokine receptor activity|interleukin-2 binding			pancreas(1)	1	Renal(35;0.156)				Aldesleukin(DB00041)|Denileukin diftitox(DB00004)	GGGGGAATCTCACTGACGAGG	0.597		NaN							Severe_Combined_Immunodeficiency_X-linked				0	0	0	0.001786	0	31	0				
IL2RG	3561	broad.mit.edu	37	X	70327726	70327726	+	Missense_Mutation	SNP	C	C	G			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chrX:70327726C>G	uc004dyw.1	-	8	984	c.970G>C	c.(970-972)GAC>CAC	p.D324H	CXorf65_uc011mpo.1_5'Flank|CXorf65_uc011mpp.1_5'Flank|IL2RG_uc004dyv.1_Missense_Mutation_p.D53H|IL2RG_uc004dyx.1_Missense_Mutation_p.D134H	NM_000206	NP_000197	P31785	IL2RG_HUMAN	interleukin 2 receptor, gamma precursor	324	Cytoplasmic (Potential).				immune response|interleukin-4-mediated signaling pathway|interspecies interaction between organisms	external side of plasma membrane|integral to plasma membrane	cytokine receptor activity|interleukin-2 binding			pancreas(1)	1	Renal(35;0.156)				Aldesleukin(DB00041)|Denileukin diftitox(DB00004)	TCACTGTAGTCTGGCTGCAGA	0.577		NaN							Severe_Combined_Immunodeficiency_X-linked				0	0	0	0.003271	0	36	0				
STAG2	10735	broad.mit.edu	37	X	123197011	123197011	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08			C	T	C	C		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chrX:123197011C>T	uc004etz.3	+	18	2116	c.1777C>T	c.(1777-1779)CAG>TAG	p.Q593*	STAG2_uc004eua.2_Nonsense_Mutation_p.Q593*|STAG2_uc004eub.2_Nonsense_Mutation_p.Q593*|STAG2_uc004euc.2_Nonsense_Mutation_p.Q593*|STAG2_uc004eud.2_Nonsense_Mutation_p.Q593*|STAG2_uc004eue.2_Nonsense_Mutation_p.Q593*	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	593					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						GCAGTTGCCTCAGTACTTTGA	0.279		NaN											0	0	0	0.002445	0	31	1		Valid		
RENBP	5973	broad.mit.edu	37	X	153205630	153205630	+	Silent	SNP	G	G	A			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chrX:153205630G>A	uc004fjo.1	-	9	1172	c.1002C>T	c.(1000-1002)CTC>CTT	p.L334L		NM_002910	NP_002901	P51606	RENBP_HUMAN	renin binding protein	334					mannose metabolic process|regulation of blood pressure		endopeptidase inhibitor activity|mannose-6-phosphate isomerase activity|N-acylglucosamine 2-epimerase activity			ovary(1)|pancreas(1)	2	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				N-Acetyl-D-glucosamine(DB00141)	TGTAACCCATGAGGAAGGCAA	0.602		NaN											0	0	0	0.00361	0	46	1				
SYCP3	50511	broad.mit.edu	37	12	102122901	102122901	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr12:102122901delT	uc001tiq.2	-	8	775	c.643delA	c.(643-645)ATTfs	p.I215fs	CHPT1_uc001tip.1_3'UTR|SYCP3_uc001tir.2_Frame_Shift_Del_p.I215fs|SYCP3_uc001tis.2_Frame_Shift_Del_p.I215fs	NM_153694	NP_710161	Q8IZU3	SYCP3_HUMAN	synaptonemal complex protein 3	215	Potential.|Gln-rich.				cell division|male meiosis I|spermatogenesis, exchange of chromosomal proteins	nucleus	DNA binding				0						TCCATCATAATTTTTTTTTGC	0.259		NaN											NaN	NaN	NaN	NaN	NaN	7	70	---		---	---
NCOR2	9612	broad.mit.edu	37	12	124885065	124885065	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08			G	-	G	G		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr12:124885065delG	uc010tba.1	-	15	1912	c.1795delC	c.(1795-1797)CAGfs	p.Q599fs	NCOR2_uc010tay.1_Frame_Shift_Del_p.Q599fs|NCOR2_uc010taz.1_Frame_Shift_Del_p.Q599fs|NCOR2_uc010tbb.1_Frame_Shift_Del_p.Q599fs|NCOR2_uc010tbc.1_Frame_Shift_Del_p.Q598fs|NCOR2_uc001ugj.1_Frame_Shift_Del_p.Q599fs	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	599					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GCGCTCTGCTGGGGGGTGATG	0.622		NaN											NaN	NaN	NaN	NaN	NaN	65	92	---	Valid	---	---
ITFG1	81533	broad.mit.edu	37	16	47195718	47195719	+	Frame_Shift_Ins	INS	-	-	CAGTC			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr16:47195718_47195719insCAGTC	uc002eet.2	-	16	1665_1666	c.1603_1604insGACTG	c.(1603-1605)GCAfs	p.A535fs	ITFG1_uc010vgg.1_Frame_Shift_Ins_p.A280fs|ITFG1_uc010vgh.1_Frame_Shift_Ins_p.A422fs	NM_030790	NP_110417	Q8TB96	TIP_HUMAN	integrin alpha FG-GAP repeat containing 1	535						extracellular region|integral to membrane				ovary(1)|central_nervous_system(1)	2		all_cancers(37;0.0613)|all_lung(18;0.0543)|Lung NSC(13;0.227)				TGGAATGATTGCAGTCCACTCT	0.337		NaN											NaN	NaN	NaN	NaN	NaN	7	109	---		---	---
MEX3D	399664	broad.mit.edu	37	19	1556090	1556090	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:1556090delA	uc010dsn.2	-	2	1428	c.1428delT	c.(1426-1428)TTTfs	p.F476fs		NM_203304	NP_976049	Q86XN8	MEX3D_HUMAN	ring finger and KH domain containing 1	476					mRNA destabilization|posttranscriptional regulation of gene expression by mRNA localization|regulation of anti-apoptosis	nucleus|perinuclear region of cytoplasm	AU-rich element binding|zinc ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGCGCGCTCAAAAGGCGCCC	0.652		NaN											NaN	NaN	NaN	NaN	NaN	2	4	---		---	---
RASIP1	54922	broad.mit.edu	37	19	49232663	49232663	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr19:49232663delC	uc002pki.2	-	5	1561	c.1364delG	c.(1363-1365)GGCfs	p.G455fs		NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	455					signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)		GACTGGGGCGCCCCGGGACGG	0.701		NaN											NaN	NaN	NaN	NaN	NaN	2	4	---		---	---
CDKN1A	1026	broad.mit.edu	37	6	36651923	36651930	+	Frame_Shift_Del	DEL	CAAGGCCT	CAAGGCCT	-			TCGA-CF-A27C-01A-11D-A16O-08	TCGA-CF-A27C-10A-01D-A16O-08			CAAGGCCT	-	CAAGGCCT	CAAGGCCT		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	acc629cb-ad03-4cec-9b21-922e4932ef3e	7c729b94-1488-4dec-b534-5d73530e535c	g.chr6:36651923_36651930delCAAGGCCT	uc003omm.3	+	2	167_174	c.45_52delCAAGGCCT	c.(43-54)AGCAAGGCCTGCfs	p.S15fs	CDKN1A_uc011dtq.1_Frame_Shift_Del_p.S49fs|CDKN1A_uc003oml.2_Frame_Shift_Del_p.S15fs|CDKN1A_uc003omn.2_Frame_Shift_Del_p.S15fs	NM_000389	NP_000380	P38936	CDN1A_HUMAN	cyclin-dependent kinase inhibitor 1A	15_18	Required for binding cyclins.|C4-type (Potential).				cell cycle arrest|cellular response to extracellular stimulus|cellular response to ionizing radiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|induction of apoptosis by intracellular signals|negative regulation of cell growth|negative regulation of cell proliferation|positive regulation of fibroblast proliferation|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|S phase of mitotic cell cycle|stress-induced premature senescence	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleoplasm|PCNA-p21 complex	cyclin-dependent protein kinase activating kinase activity|cyclin-dependent protein kinase inhibitor activity|metal ion binding			ovary(1)|breast(1)	2						CATGCGGCAGCAAGGCCTGCCGCCGCCT	0.635		NaN							Multiple_Endocrine_Neoplasia_type_1				NaN	NaN	NaN	NaN	NaN	11	1	---	Valid	---	---
