Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	isArtifactMode	oxoGCut	pox	pox_cutoff	qox	t_alt_count	t_ref_count	validation_alt_allele	validation_by_all_platform	validation_method	validation_tumor_sample
EIF4G3	8672	broad.mit.edu	37	1	21329220	21329220	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:21329220G>A	uc001bec.2	-	3	272	c.16C>T	c.(16-18)CAA>TAA	p.Q6*	EIF4G3_uc010odj.1_Nonsense_Mutation_p.Q6*|EIF4G3_uc009vpz.2_Nonsense_Mutation_p.Q6*|EIF4G3_uc001bed.2_Nonsense_Mutation_p.Q6*|EIF4G3_uc001bef.2_Nonsense_Mutation_p.Q6*|EIF4G3_uc001bee.2_Nonsense_Mutation_p.Q6*|EIF4G3_uc001beg.2_Nonsense_Mutation_p.Q6*|EIF4G3_uc010odk.1_Nonsense_Mutation_p.Q6*|EIF4G3_uc001beh.2_Nonsense_Mutation_p.Q6*	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	6					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		GAACGGGTTTGAGGTTGTGAA	0.443		NaN											0	0	0	0.01441	0	70	143				
KIAA1522	57648	broad.mit.edu	37	1	33235330	33235330	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:33235330C>T	uc001bvv.2	+	5	602	c.466C>T	c.(466-468)CGG>TGG	p.R156W	KIAA1522_uc001bvu.1_Missense_Mutation_p.R215W|KIAA1522_uc010ohm.1_Missense_Mutation_p.R167W|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	156	Poly-Arg.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				AGGGCGGCGTCGGCGGGAGCG	0.627		NaN											0	0	0	0.010729	0	9	45				
KIAA1522	57648	broad.mit.edu	37	1	33236198	33236198	+	Nonsense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:33236198C>G	uc001bvv.2	+	6	1377	c.1241C>G	c.(1240-1242)TCA>TGA	p.S414*	KIAA1522_uc001bvu.1_Nonsense_Mutation_p.S473*|KIAA1522_uc010ohm.1_Nonsense_Mutation_p.S425*|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	414	Ser-rich.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				GCTGAGGCCTCAGACACACTC	0.677		NaN											0	0	0	0.006214	0	7	67				
CYP4B1	1580	broad.mit.edu	37	1	47283813	47283813	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:47283813C>G	uc001cqm.3	+	11	1364	c.1280C>G	c.(1279-1281)TCT>TGT	p.S427C	CYP4B1_uc001cqn.3_Missense_Mutation_p.S428C|CYP4B1_uc009vym.2_Missense_Mutation_p.S413C|CYP4B1_uc010omk.1_Missense_Mutation_p.S264C	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	427					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GTCTTTGACTCTCTGCGCTTT	0.582		NaN											0	0	0	0.007413	0	16	107				
PCSK9	255738	broad.mit.edu	37	1	55521852	55521852	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:55521852C>T	uc001cyf.1	+	6	1277	c.986C>T	c.(985-987)TCA>TTA	p.S329L	PCSK9_uc010oom.1_RNA	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	329	Peptidase S8.				cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						TCCCCAGCCTCAGCTCCCGAG	0.507		NaN											0	0	0	0.008291	0	8	9				
DEPDC1	55635	broad.mit.edu	37	1	68949729	68949729	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:68949729C>G	uc001dem.3	-	7	931	c.814G>C	c.(814-816)GAA>CAA	p.E272Q	DEPDC1_uc001dej.3_5'Flank|DEPDC1_uc001dek.3_RNA|DEPDC1_uc001del.3_Missense_Mutation_p.E272Q	NM_001114120	NP_001107592	Q5TB30	DEP1A_HUMAN	DEP domain containing 1 isoform a	272					intracellular signal transduction|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	GTPase activator activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(397;7.21e-36)		ACATCTCGTTCAAATCCAACA	0.294		NaN											0	0	0	0.016723	0	9	29				
LRRIQ3	127255	broad.mit.edu	37	1	74649182	74649182	+	Missense_Mutation	SNP	T	T	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:74649182T>C	uc001dfy.3	-	2	379	c.187A>G	c.(187-189)ACA>GCA	p.T63A	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	63	LRR 1.									ovary(2)	2						TGAATATCTGTAATAAaattg	0.154		NaN											0	0	0	0.007413	0	16	18				
RTCD1	8634	broad.mit.edu	37	1	100756986	100756986	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:100756986G>C	uc001dtc.2	+	11	1245	c.1027G>C	c.(1027-1029)GAT>CAT	p.D343H	RTCD1_uc001dtd.2_Missense_Mutation_p.D356H	NM_003729	NP_003720	O00442	RTC1_HUMAN	RNA terminal phosphate cyclase domain 1 isoform	343					RNA processing	mitochondrion|nucleoplasm	ATP binding|protein binding|RNA binding|RNA-3'-phosphate cyclase activity				0		all_epithelial(167;0.000686)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0513)|all cancers(265;0.0902)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)		GAAATCAGAAGATGAAGAAGA	0.358		NaN											0	0	0	0.028581	0	13	51				
DCST2	127579	broad.mit.edu	37	1	154995858	154995858	+	Missense_Mutation	SNP	C	C	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:154995858C>A	uc001fgm.2	-	13	2026	c.1946G>T	c.(1945-1947)GGG>GTG	p.G649V	DCST2_uc009wpb.2_RNA	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	649	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GTCCAGGTCCCCCTGGTAGGA	0.602		NaN											1	0	2.62699e-14	0.024245	2.79982e-14	11	21				
GBA	2629	broad.mit.edu	37	1	155207361	155207361	+	Missense_Mutation	SNP	T	T	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:155207361T>A	uc001fjh.2	-	7	920	c.770A>T	c.(769-771)GAT>GTT	p.D257V	RAG1AP1_uc010pey.1_Intron|GBA_uc010pfw.1_Missense_Mutation_p.D144V|GBA_uc010pfx.1_Missense_Mutation_p.D208V|GBA_uc001fji.2_Missense_Mutation_p.D257V|GBA_uc001fjj.2_Missense_Mutation_p.D257V|GBA_uc001fjk.2_Missense_Mutation_p.D257V|GBA_uc001fjl.2_Missense_Mutation_p.D257V|GBA_uc010pfy.1_Missense_Mutation_p.D170V|GBA_uc009wqk.1_Missense_Mutation_p.D170V	NM_000157	NP_000148	P04062	GLCM_HUMAN	glucocerebrosidase precursor	257					carbohydrate metabolic process|cell death|cellular response to tumor necrosis factor|ceramide biosynthetic process|glucosylceramide catabolic process|lysosome organization|negative regulation of interleukin-6 production|negative regulation of MAP kinase activity|positive regulation of protein dephosphorylation|sphingosine biosynthetic process|termination of signal transduction	lysosomal lumen|lysosomal membrane	cation binding|glucosylceramidase activity|receptor binding			ovary(1)|skin(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)		Alglucerase(DB00088)|Imiglucerase(DB00053)	AGCATAGGCATCCAGGAACCT	0.423		NaN							Gaucher_disease_type_I				0	0	0	0.008871	0	9	13				
ASH1L	55870	broad.mit.edu	37	1	155449087	155449087	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:155449087G>A	uc009wqq.2	-	3	4054	c.3574C>T	c.(3574-3576)CAT>TAT	p.H1192Y	ASH1L_uc001fkt.2_Missense_Mutation_p.H1192Y|ASH1L_uc009wqr.1_Missense_Mutation_p.H1192Y	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1192					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TCATCACTATGAGACTCACTG	0.443		NaN											0	0	0	0.013726	0	28	47				
ASH1L	55870	broad.mit.edu	37	1	155449222	155449222	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:155449222G>A	uc009wqq.2	-	3	3919	c.3439C>T	c.(3439-3441)CAG>TAG	p.Q1147*	ASH1L_uc001fkt.2_Nonsense_Mutation_p.Q1147*|ASH1L_uc009wqr.1_Nonsense_Mutation_p.Q1147*	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1147					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			GCAAGAGTCTGAATCATACTG	0.473		NaN											0	0	0	0.00499	0	16	46				
TNN	63923	broad.mit.edu	37	1	175066815	175066815	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:175066815G>A	uc001gkl.1	+	8	1964	c.1851G>A	c.(1849-1851)CCG>CCA	p.P617P	TNN_uc010pmx.1_Intron	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	617	Fibronectin type-III 4.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CCAACGCCCCGACAGGTAACA	0.512		NaN											0	0	0	0.021553	0	4	94				
FAM5B	57795	broad.mit.edu	37	1	177245417	177245417	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:177245417G>A	uc001glf.2	+	6	1171	c.859G>A	c.(859-861)GAG>AAG	p.E287K	FAM5B_uc010pna.1_Missense_Mutation_p.E37K|FAM5B_uc001glg.2_Missense_Mutation_p.E182K	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	287						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CTCTGAGGGTGAGCTCGTCTG	0.572		NaN											0	0	0	0.010504	0	18	54				
PRG4	10216	broad.mit.edu	37	1	186276100	186276100	+	Missense_Mutation	SNP	A	A	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:186276100A>C	uc001gru.3	+	7	1300	c.1249A>C	c.(1249-1251)ACC>CCC	p.T417P	PRG4_uc001grt.3_Missense_Mutation_p.T376P|PRG4_uc009wyl.2_Missense_Mutation_p.T324P|PRG4_uc009wym.2_Missense_Mutation_p.T283P|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	417	9.|59 X 8 AA repeats of K-X-P-X-P-T-T-X.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCCACCACCACCAAGGAGCC	0.652		NaN											0	0	0	0.006214	0	5	105				
CFHR1	3078	broad.mit.edu	37	1	196794771	196794771	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:196794771G>C	uc001gtn.2	+	2	337	c.223G>C	c.(223-225)GAA>CAA	p.E75Q	CFHR1_uc001gtm.2_Intron	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	75	Sushi 1.				complement activation	extracellular space					0						ATGCACAGAAGAAGGATGGTC	0.388		NaN											0	0	0	0.008361	0	21	46				
MTR	4548	broad.mit.edu	37	1	236978926	236978926	+	Missense_Mutation	SNP	A	A	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr1:236978926A>G	uc001hyi.3	+	7	1055	c.632A>G	c.(631-633)AAT>AGT	p.N211S	MTR_uc010pxv.1_RNA|MTR_uc010pxw.1_5'UTR|MTR_uc010pxx.1_Missense_Mutation_p.N211S|MTR_uc010pxy.1_Missense_Mutation_p.N211S|MTR_uc009xgj.1_Missense_Mutation_p.I42V	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	211	Hcy-binding.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	GCACTCCAAAATCTTTTTGAG	0.363		NaN											0	0	0	0.014323	0	17	50				
C10orf18	54906	broad.mit.edu	37	10	5798670	5798670	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr10:5798670G>A	uc001iij.2	+	16	7326	c.6701G>A	c.(6700-6702)AGA>AAA	p.R2234K	C10orf18_uc001iik.2_Missense_Mutation_p.R1078K	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	2234										ovary(1)|central_nervous_system(1)	2						ATCATCATCAGAAATGAAGAT	0.393		NaN											0	0	0	0.027356	0	25	46				
WAC	51322	broad.mit.edu	37	10	28897274	28897274	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr10:28897274C>T	uc001iuf.2	+	8	1164	c.1079C>T	c.(1078-1080)CCA>CTA	p.P360L	WAC_uc001iud.2_Missense_Mutation_p.P315L|WAC_uc001iue.2_Missense_Mutation_p.P50L|WAC_uc009xlb.2_Missense_Mutation_p.P315L|WAC_uc001iug.2_Missense_Mutation_p.P257L|WAC_uc001iuh.2_Missense_Mutation_p.P315L	NM_016628	NP_057712	Q9BTA9	WAC_HUMAN	WW domain-containing adapter with a coiled-coil	360					cell cycle checkpoint|histone H2B conserved C-terminal lysine ubiquitination|histone monoubiquitination|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nuclear speck	chromatin binding|RNA polymerase II core binding			large_intestine(1)|ovary(1)	2						CTTCAGGACCCAAATCTTCTT	0.448		NaN											0	0	0	0.010729	0	11	11				
CHAT	1103	broad.mit.edu	37	10	50873030	50873030	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr10:50873030G>A	uc001jhz.2	+	15	2338	c.2185G>A	c.(2185-2187)GAG>AAG	p.E729K	CHAT_uc001jhv.1_Missense_Mutation_p.E611K|CHAT_uc001jhx.1_Missense_Mutation_p.E611K|CHAT_uc001jhy.1_Missense_Mutation_p.E611K|CHAT_uc001jia.2_Missense_Mutation_p.E611K|CHAT_uc010qgs.1_Intron	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	729					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	GCCGCCTACTGAGAGCAAGCC	0.522		NaN											0	0	0	0.01441	0	54	60				
HECTD2	143279	broad.mit.edu	37	10	93252132	93252132	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr10:93252132G>C	uc001khl.2	+	13	1423	c.1323G>C	c.(1321-1323)TTG>TTC	p.L441F	LOC100188947_uc010qnl.1_Intron|HECTD2_uc010qnm.1_Missense_Mutation_p.L445F|HECTD2_uc001khm.2_RNA|HECTD2_uc009xty.1_Missense_Mutation_p.L30F|HECTD2_uc001khn.1_Missense_Mutation_p.L91F	NM_182765	NP_877497	Q5U5R9	HECD2_HUMAN	HECT domain containing 2 isoform a	441	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			skin(1)	1						GAGCCGATTTGAAAAAGAAGT	0.348		NaN											0	0	0	0.013537	0	12	14				
MYOF	26509	broad.mit.edu	37	10	95123738	95123738	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr10:95123738C>T	uc001kin.2	-	27	2971	c.2848G>A	c.(2848-2850)GAG>AAG	p.E950K	MYOF_uc001kio.2_Missense_Mutation_p.E937K|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	950	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						TAGGTGTCCTCGGCCGGCTTC	0.612		NaN											0	0	0	0.01441	0	70	63				
MUC6	4588	broad.mit.edu	37	11	1017507	1017507	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:1017507G>A	uc001lsw.2	-	31	5345	c.5294C>T	c.(5293-5295)TCT>TTT	p.S1765F		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1765	Thr-rich.|Approximate repeats.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCTGGTGGTAGAAGTTGAGGT	0.577		NaN											0	0	0	0.01892	0	19	649				
PDE3B	5140	broad.mit.edu	37	11	14839736	14839736	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:14839736G>A	uc001mln.2	+	6	1883	c.1530G>A	c.(1528-1530)TTG>TTA	p.L510L	PDE3B_uc010rcr.1_Silent_p.L459L	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B	510					cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						AAGGTGTTTTGTCCAGTCTGA	0.323		NaN											0	0	0	0.004672	0	3	11				
OR5W2	390148	broad.mit.edu	37	11	55681259	55681259	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:55681259G>A	uc010rir.1	-	1	800	c.800C>T	c.(799-801)TCT>TTT	p.S267F		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTGATCTAGAGAATAGGAAGA	0.438		NaN											0	0	0	0.021553	0	6	36				
SCGB2A1	4246	broad.mit.edu	37	11	61978051	61978051	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:61978051G>A	uc001nta.2	+	2	286	c.222G>A	c.(220-222)CTG>CTA	p.L74L		NM_002407	NP_002398	O75556	SG2A1_HUMAN	secretoglobin, family 2A, member 1 precursor	74						extracellular region	androgen binding				0						ATAGAACTCTGAAAAACTTTG	0.418		NaN											0	0	0	0.00499	0	15	41				
SLC22A10	387775	broad.mit.edu	37	11	63072221	63072221	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:63072221G>C	uc009yor.2	+	9	1666	c.1458G>C	c.(1456-1458)TTG>TTC	p.L486F	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_3'UTR	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	486	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						CTCCCCTCTTGATGACCTTAA	0.408		NaN											0	0	0	0.010729	0	11	68				
C2CD3	26005	broad.mit.edu	37	11	73814325	73814325	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:73814325C>T	uc001ouu.2	-	14	2658	c.2431G>A	c.(2431-2433)GTG>ATG	p.V811M		NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	811						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					CCATCTGGCACCATCAACAGC	0.413		NaN											0	0	0	0.01892	0	23	105				
PGM2L1	283209	broad.mit.edu	37	11	74053678	74053678	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:74053678G>A	uc001ovb.1	-	12	1756	c.1460C>T	c.(1459-1461)TCA>TTA	p.S487L		NM_173582	NP_775853	Q6PCE3	PGM2L_HUMAN	phosphoglucomutase 2-like 1	487					glucose 1-phosphate metabolic process	cytosol	glucose-1,6-bisphosphate synthase activity|phosphoglucomutase activity			ovary(1)	1	Breast(11;3.32e-06)					GGAAGTTTTTGAAATATGATA	0.289		NaN											0	0	0	0.016723	0	9	37				
INTS4	92105	broad.mit.edu	37	11	77669853	77669853	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:77669853C>T	uc001oys.2	-	7	764	c.736G>A	c.(736-738)GAA>AAA	p.E246K	INTS4_uc001oyt.2_RNA|INTS4_uc001oyu.1_Missense_Mutation_p.E246K	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	246	HEAT 4.				snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			CGCACTTGTTCATAGTCATCA	0.428		NaN											0	0	0	0.001984	0	6	31				
SYTL2	54843	broad.mit.edu	37	11	85445049	85445049	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:85445049G>C	uc010rth.1	-	6	1596	c.1320C>G	c.(1318-1320)ATC>ATG	p.I440M	SYTL2_uc010rtg.1_Missense_Mutation_p.I441M|SYTL2_uc010rti.1_Missense_Mutation_p.I440M|SYTL2_uc010rtj.1_Missense_Mutation_p.I392M|SYTL2_uc001pbf.3_Missense_Mutation_p.I440M|SYTL2_uc010rtf.1_Missense_Mutation_p.I298M	NM_001162951	NP_001156423	Q9HCH5	SYTL2_HUMAN	synaptotagmin-like 2 isoform g	440					intracellular protein transport|vesicle docking involved in exocytosis	exocytic vesicle|extrinsic to plasma membrane|melanosome|membrane fraction	neurexin binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding|Rab GTPase binding			ovary(2)|large_intestine(1)	3		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)		KIRC - Kidney renal clear cell carcinoma(183;0.202)|Kidney(183;0.237)		TGGGTTCATTGATGGTTGGTG	0.383		NaN											0	0	0	0.01441	0	39	80				
NAALAD2	10003	broad.mit.edu	37	11	89885588	89885588	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:89885588G>A	uc001pdf.3	+	6	841	c.732G>A	c.(730-732)CAG>CAA	p.Q244Q	NAALAD2_uc009yvx.2_Silent_p.Q244Q|NAALAD2_uc009yvy.2_Silent_p.Q244Q|NAALAD2_uc001pdd.2_Silent_p.Q244Q|NAALAD2_uc001pde.2_Silent_p.Q244Q	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	244	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				CTGCAGCCCAGAGAGGAAATG	0.473		NaN											0	0	0	0.006122	0	14	72				
CASP4	837	broad.mit.edu	37	11	104815563	104815563	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:104815563C>G	uc001pid.1	-	8	1124	c.1051G>C	c.(1051-1053)GAA>CAA	p.E351Q	CASP4_uc001pib.1_Missense_Mutation_p.E295Q|CASP4_uc009yxg.1_Missense_Mutation_p.E260Q	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor	351					apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		CTTGGAGTTTCAAATGATTGC	0.403		NaN											0	0	0	0.001984	0	5	27				
GLB1L3	112937	broad.mit.edu	37	11	134180464	134180464	+	Splice_Site	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:134180464G>C	uc009zdf.2	+	12	1460	c.1100_splice	c.e12-1	p.D367_splice	GLB1L3_uc010scu.1_3'UTR|GLB1L3_uc001qho.3_Splice_Site	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3						carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		GTGTCTTGCAGACTATGATGC	0.522		NaN											0	0	0	0.00308	0	6	17				
CHD4	1108	broad.mit.edu	37	12	6705273	6705273	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr12:6705273C>G	uc001qpo.2	-	13	2087	c.1923G>C	c.(1921-1923)TTG>TTC	p.L641F	CHD4_uc001qpn.2_Missense_Mutation_p.L634F|CHD4_uc001qpp.2_Missense_Mutation_p.L638F	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	641	Chromo 2.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						GCCACTTGATCAAGTAGTGGA	0.507		NaN											0	0	0	0.013726	0	31	75				
CHD4	1108	broad.mit.edu	37	12	6705294	6705294	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr12:6705294C>G	uc001qpo.2	-	13	2066	c.1902G>C	c.(1900-1902)AAG>AAC	p.K634N	CHD4_uc001qpn.2_Missense_Mutation_p.K627N|CHD4_uc001qpp.2_Missense_Mutation_p.K631N	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	634	Chromo 2.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						CGTGGCCCTTCTTGTCCACAC	0.507		NaN											0	0	0	0.007291	0	27	65				
CD163	9332	broad.mit.edu	37	12	7640120	7640120	+	Missense_Mutation	SNP	C	C	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr12:7640120C>A	uc001qsz.3	-	8	2013	c.1885G>T	c.(1885-1887)GCC>TCC	p.A629S	CD163_uc001qta.3_Missense_Mutation_p.A629S|CD163_uc009zfw.2_Missense_Mutation_p.A662S	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	629	SRCR 6.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GTAGAAAGGGCAACTCCACAT	0.507		NaN											1	0	2.61193e-14	0.009535	2.79603e-14	28	116				
APOBEC1	339	broad.mit.edu	37	12	7805382	7805382	+	Missense_Mutation	SNP	G	G	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr12:7805382G>T	uc001qtb.2	-	3	128	c.94C>A	c.(94-96)CTT>ATT	p.L32I	APOBEC1_uc001qtc.2_5'UTR|APOBEC1_uc010sgf.1_Missense_Mutation_p.L32I	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	32					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						TCTTTACGAAGTTCTCTGGGG	0.478		NaN											1	0	2.24059e-21	0.00632	2.44154e-21	20	54				
PKP2	5318	broad.mit.edu	37	12	32977077	32977077	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr12:32977077C>T	uc001rlj.3	-	8	1823	c.1708G>A	c.(1708-1710)GCT>ACT	p.A570T	PKP2_uc001rlk.3_Missense_Mutation_p.A526T|PKP2_uc010skj.1_Missense_Mutation_p.A526T	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	570					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CTCCCATCAGCGCCAGCAGAA	0.413		NaN											0	0	0	0.021523	0	23	40				
KRT80	144501	broad.mit.edu	37	12	52574698	52574698	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr12:52574698G>A	uc001rzx.2	-	3	657	c.559C>T	c.(559-561)CAG>TAG	p.Q187*	KRT80_uc001rzw.2_Nonsense_Mutation_p.Q124*|KRT80_uc001rzy.2_Nonsense_Mutation_p.Q187*	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	187	Coil 1B.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		TTCTTCAGCTGAACAAAGGTG	0.582		NaN											0	0	0	0.007291	0	24	40				
KRT80	144501	broad.mit.edu	37	12	52574708	52574708	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr12:52574708G>A	uc001rzx.2	-	3	647	c.549C>T	c.(547-549)TTC>TTT	p.F183F	KRT80_uc001rzw.2_Silent_p.F120F|KRT80_uc001rzy.2_Silent_p.F183F	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	183	Coil 1B.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		GAACAAAGGTGAACTCCATGT	0.592		NaN											0	0	0	0.008361	0	24	43				
OR9K2	441639	broad.mit.edu	37	12	55523876	55523876	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr12:55523876C>T	uc010spe.1	+	1	324	c.324C>T	c.(322-324)ATC>ATT	p.I108I		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	108	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						AGGCTATGATCAACTTCTGGT	0.453		NaN											0	0	0	0.028581	0	16	64				
PAN2	9924	broad.mit.edu	37	12	56721825	56721825	+	Missense_Mutation	SNP	A	A	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr12:56721825A>T	uc001skx.2	-	5	978	c.605T>A	c.(604-606)ATG>AAG	p.M202K	PAN2_uc001skz.2_Missense_Mutation_p.M202K|PAN2_uc001sky.2_Missense_Mutation_p.M202K	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	202					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						TGTCTGTCTCATGATGGTGAC	0.507		NaN											0	0	0	0.001984	0	6	33				
MON2	23041	broad.mit.edu	37	12	62986494	62986494	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr12:62986494C>G	uc001sre.2	+	35	5510	c.5119C>G	c.(5119-5121)CCA>GCA	p.P1707A	MON2_uc009zqj.2_3'UTR|MON2_uc010ssl.1_Missense_Mutation_p.P1635A|MON2_uc010ssm.1_Missense_Mutation_p.P1678A|MON2_uc010ssn.1_Missense_Mutation_p.P1701A|MON2_uc001srf.2_Missense_Mutation_p.P1470A|MON2_uc001srg.2_Missense_Mutation_p.P576A	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	1708					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		TTTCATGCAGCCACCAGCATC	0.393		NaN											0	0	0	0.00632	0	23	42				
DOCK9	23348	broad.mit.edu	37	13	99459962	99459962	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr13:99459962C>G	uc001vnt.2	-	50	5567	c.5512G>C	c.(5512-5514)GAT>CAT	p.D1838H	DOCK9_uc001vnw.2_Missense_Mutation_p.D1837H|DOCK9_uc001vnq.2_Missense_Mutation_p.D385H|DOCK9_uc001vnr.2_Missense_Mutation_p.D467H|DOCK9_uc010tin.1_Missense_Mutation_p.D456H|DOCK9_uc001vns.2_Missense_Mutation_p.D373H|DOCK9_uc010tio.1_Missense_Mutation_p.D493H|DOCK9_uc010tip.1_Missense_Mutation_p.D534H	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	1838	DHR-2.				blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CCAAATTTATCCGAGTACAGT	0.373		NaN											0	0	0	0.008291	0	9	39				
FBN1	2200	broad.mit.edu	37	15	48779383	48779383	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr15:48779383C>T	uc001zwx.1	-	29	3806	c.3478G>A	c.(3478-3480)GAG>AAG	p.E1160K		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1160	EGF-like 18; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GCACTCAGCTCACATTCATTG	0.468		NaN											0	0	0	0.008291	0	7	63				
FBN1	2200	broad.mit.edu	37	15	48888548	48888548	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr15:48888548C>G	uc001zwx.1	-	6	798	c.470G>C	c.(469-471)GGA>GCA	p.G157A		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	157	EGF-like 3.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		ACACCTTCCTCCATTGAGACA	0.418		NaN											0	0	0	0.009096	0	3	60				
USP8	9101	broad.mit.edu	37	15	50782585	50782585	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr15:50782585G>C	uc001zym.3	+	15	2597	c.2097G>C	c.(2095-2097)AAG>AAC	p.K699N	USP8_uc001zyl.3_Missense_Mutation_p.K699N|USP8_uc001zyn.3_Missense_Mutation_p.K699N|USP8_uc010ufh.1_Missense_Mutation_p.K593N|USP8_uc001zyp.3_5'Flank	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	699					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		ATAAAGCCAAGCCACAGATTC	0.498		NaN											0	0	0	0.010504	0	17	64				
SNX22	79856	broad.mit.edu	37	15	64446167	64446167	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr15:64446167C>T	uc002anc.1	+	6	485	c.426C>T	c.(424-426)TTC>TTT	p.F142F	SNX22_uc002amz.1_Silent_p.F114F|SNX22_uc002ana.1_3'UTR|SNX22_uc002anb.1_RNA	NM_024798	NP_079074	Q96L94	SNX22_HUMAN	sorting nexin 22	142					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding				0						TCCTGAGCTTCCATGTGGATC	0.612		NaN									OREG0023180	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.011902	0	34	176				
MTFMT	123263	broad.mit.edu	37	15	65316099	65316099	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr15:65316099C>T	uc002aof.3	-	3	479	c.453G>A	c.(451-453)CCG>CCA	p.P151P		NM_139242	NP_640335	Q96DP5	FMT_HUMAN	mitochondrial methionyl-tRNA formyltransferase	151						mitochondrion	methionyl-tRNA formyltransferase activity|methyltransferase activity			ovary(2)	2					Tetrahydrofolic acid(DB00116)	CACGCCATCTCGGGAGGCAAC	0.438		NaN											0	0	0	0.014758	0	5	13				
CCDC33	80125	broad.mit.edu	37	15	74554886	74554886	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr15:74554886G>C	uc002axo.2	+	3	685	c.291G>C	c.(289-291)GAG>GAC	p.E97D		NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	300	C2.						protein binding			ovary(3)|skin(2)	5						TGAATGTGGAGATCCAAGCTG	0.572		NaN											0	0	0	0.010729	0	10	12				
FAH	2184	broad.mit.edu	37	15	80465390	80465390	+	Silent	SNP	C	C	T	rs145851627		TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr15:80465390C>T	uc002bfj.2	+	10	823	c.741C>T	c.(739-741)CTC>CTT	p.L247L	FAH_uc002bfk.1_Silent_p.L247L|FAH_uc002bfm.1_Silent_p.L247L|FAH_uc002bfn.1_Silent_p.L177L	NM_000137	NP_000128	P16930	FAAA_HUMAN	fumarylacetoacetase	247					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	fumarylacetoacetase activity|metal ion binding				0						ATGTCCCTCTCGGGCCATTCC	0.572		NaN							Tyrosinemia_type_1		OREG0023354	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.016522	0	21	88				
IGF1R	3480	broad.mit.edu	37	15	99452048	99452048	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr15:99452048G>A	uc002bul.2	+	6	1432	c.1382G>A	c.(1381-1383)CGC>CAC	p.R461H	IGF1R_uc010urq.1_Missense_Mutation_p.R461H|IGF1R_uc010bon.2_Missense_Mutation_p.R461H|IGF1R_uc010urr.1_5'Flank	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	461					anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	GAAATTTACCGCATGGAGGAA	0.498		NaN											0	0	0	0.014758	0	3	25				
SRRM2	23524	broad.mit.edu	37	16	2813668	2813668	+	Missense_Mutation	SNP	G	G	A	rs150618420	by1000genomes	TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr16:2813668G>A	uc002crk.2	+	11	3688	c.3139G>A	c.(3139-3141)GAG>AAG	p.E1047K	SRRM2_uc002crj.1_Missense_Mutation_p.E951K|SRRM2_uc002crl.1_Missense_Mutation_p.E1047K|SRRM2_uc010bsu.1_Missense_Mutation_p.E951K	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1047	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						ACCACCAGGCGAGAGCTATTT	0.468		NaN											0	0	0	0.024245	0	12	83				
MMP25	64386	broad.mit.edu	37	16	3100442	3100442	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr16:3100442G>A	uc002cth.2	+	4	793	c.556G>A	c.(556-558)GAC>AAC	p.D186N	MMP25_uc002cti.1_Missense_Mutation_p.D122N	NM_022468	NP_071913	Q9NPA2	MMP25_HUMAN	matrix metalloproteinase 25 preproprotein	186					inflammatory response|proteolysis	anchored to membrane|cell surface|plasma membrane|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0						CTACCCCTTCGACGGGTTGGG	0.622		NaN											0	0	0	0.007835	0	34	62				
RBBP6	5930	broad.mit.edu	37	16	24583041	24583041	+	Missense_Mutation	SNP	A	A	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr16:24583041A>G	uc002dmh.2	+	18	5694	c.4654A>G	c.(4654-4656)AAA>GAA	p.K1552E	RBBP6_uc002dmi.2_Missense_Mutation_p.K1518E|RBBP6_uc010bxr.2_Missense_Mutation_p.K712E|RBBP6_uc002dmk.2_Missense_Mutation_p.K1385E	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1552					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		TTATGATACTAAACGGCCAAA	0.368		NaN											0	0	0	0.024245	0	13	33				
HS3ST4	9951	broad.mit.edu	37	16	26147147	26147147	+	Missense_Mutation	SNP	A	A	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr16:26147147A>C	uc002dof.2	+	2	1341	c.949A>C	c.(949-951)AAA>CAA	p.K317Q		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	317	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		GCTGGCCTTCAAAAACCGGAC	0.547		NaN											0	0	0	0.01441	0	72	170				
PHKG2	5261	broad.mit.edu	37	16	30764566	30764566	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr16:30764566G>A	uc002dzk.1	+	5	433	c.340G>A	c.(340-342)GAG>AAG	p.E114K	PHKG2_uc002dzi.1_Missense_Mutation_p.E114K|PHKG2_uc002dzj.1_Missense_Mutation_p.E12K	NM_000294	NP_000285	P15735	PHKG2_HUMAN	phosphorylase kinase, gamma 2 (testis)	114	Protein kinase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	ATP binding|calmodulin binding|phosphorylase kinase activity			ovary(1)	1			Colorectal(24;0.198)			GCGGAAGGGAGAGCTGTTTGA	0.552		NaN											0	0	0	0.028581	0	13	39				
ZNF646	9726	broad.mit.edu	37	16	31090265	31090265	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr16:31090265G>A	uc002eap.2	+	2	2909	c.2620G>A	c.(2620-2622)GAG>AAG	p.E874K		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	874					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						TAGGCCTGGGGAGGCGACCTC	0.647		NaN											0	0	0	0.015359	0	33	87				
ZNF646	9726	broad.mit.edu	37	16	31090309	31090309	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr16:31090309G>C	uc002eap.2	+	2	2953	c.2664G>C	c.(2662-2664)ATG>ATC	p.M888I		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	888	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						TCTGTGGCATGATCTTCCCTG	0.637		NaN											0	0	0	0.00499	0	16	59				
NOB1	28987	broad.mit.edu	37	16	69776286	69776286	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr16:69776286C>T	uc002exs.2	-	9	1204	c.1188G>A	c.(1186-1188)CGG>CGA	p.R396R		NM_014062	NP_054781	Q9ULX3	NOB1_HUMAN	nin one binding protein	396						nucleus	metal ion binding|protein binding				0						TTAAGCGTCTCCGCCCAGCTC	0.587		NaN											0	0	0	0.020292	0	11	37				
PDPR	55066	broad.mit.edu	37	16	70190728	70190728	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr16:70190728C>T	uc002eyf.1	+	19	3543	c.2586C>T	c.(2584-2586)TTC>TTT	p.F862F	CLEC18C_uc002exy.2_Intron|PDPR_uc010vlr.1_Silent_p.F762F|PDPR_uc002eyg.1_Silent_p.F529F|PDPR_uc002eyh.2_Silent_p.F207F|PDPR_uc010vls.1_Silent_p.F207F	NM_017990	NP_060460	Q8NCN5	PDPR_HUMAN	pyruvate dehydrogenase phosphatase regulatory	862					glycine catabolic process|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	aminomethyltransferase activity|oxidoreductase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.124)		CCTCCCTCTTCACCCAGAAGC	0.562		NaN											0	0	0	0.021553	0	4	30				
TP53	7157	broad.mit.edu	37	17	7578275	7578275	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08			G	A	G	G		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:7578275G>A	uc002gim.2	-	6	768	c.574C>T	c.(574-576)CAG>TAG	p.Q192*	TP53_uc002gig.1_Nonsense_Mutation_p.Q192*|TP53_uc002gih.2_Nonsense_Mutation_p.Q192*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.Q60*|TP53_uc010cng.1_Nonsense_Mutation_p.Q60*|TP53_uc002gii.1_Nonsense_Mutation_p.Q60*|TP53_uc010cnh.1_Nonsense_Mutation_p.Q192*|TP53_uc010cni.1_Nonsense_Mutation_p.Q192*|TP53_uc002gij.2_Nonsense_Mutation_p.Q192*|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Nonsense_Mutation_p.Q99*|TP53_uc002gio.2_Nonsense_Mutation_p.Q60*|TP53_uc010vug.1_Nonsense_Mutation_p.Q153*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	192	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		Q -> P (in sporadic cancers; somatic mutation).|Q -> H (in sporadic cancers; somatic mutation).|Q -> R (in sporadic cancers; somatic mutation).|QH -> HN (in a sporadic cancer; somatic mutation).|QH -> HY (in a sporadic cancer; somatic mutation).|Q -> L (in sporadic cancers; somatic mutation).|Q -> K (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.Q192*(64)|p.0?(7)|p.Q192R(5)|p.A189_V197delAPPQHLIRV(4)|p.Q192H(3)|p.P191fs*53(2)|p.G187fs*16(2)|p.Q192Q(2)|p.P191del(2)|p.K164_P219del(1)|p.P191fs*6(1)|p.A189_Q192>E(1)|p.P191fs*15(1)|p.P191_Q192delPQ(1)|p.Q192>XXXXXXXXX(1)|p.Q192K(1)|p.A189fs*53(1)|p.Q192fs*56(1)|p.Q192del(1)|p.Q192fs*16(1)|p.L188_P191del(1)|p.Q192fs*30(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ATAAGATGCTGAGGAGGGGCC	0.557		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			0	0	0	0.006122	0	15	32		Valid		
TRPV2	51393	broad.mit.edu	37	17	16326850	16326850	+	Missense_Mutation	SNP	C	C	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:16326850C>A	uc002gpy.2	+	5	1060	c.693C>A	c.(691-693)AAC>AAA	p.N231K	TRPV2_uc002gpz.2_Intron	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	231	Cytoplasmic (Potential).|Required for interaction with SLC50A1 (By similarity).|ANK 4.				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TCCTGGAGAACCCACACCAGC	0.607		NaN											1	0	7.53189e-24	0.007835	8.28168e-24	37	56				
NF1	4763	broad.mit.edu	37	17	29701127	29701127	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08			G	C	G	G		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:29701127G>C	uc002hgg.2	+	58	8807	c.8474G>C	c.(8473-8475)AGA>ACA	p.R2825T	NF1_uc002hgh.2_Missense_Mutation_p.R2804T|NF1_uc010cso.2_Missense_Mutation_p.R1031T|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2825					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CAGAAGCAAAGAAGCGCTGGC	0.468		NaN	D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			0	0	0	0.010729	0	9	49		Valid		
LIG3	3980	broad.mit.edu	37	17	33318055	33318055	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:33318055G>C	uc002hik.1	+	5	1071	c.963G>C	c.(961-963)TTG>TTC	p.L321F	LIG3_uc002hij.2_Missense_Mutation_p.L321F|LIG3_uc010cth.1_Missense_Mutation_p.L330F	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	321					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	TTTACAACTTGAACGATAAGC	0.488		NaN						Other_BER_factors					0	0	0	0.027894	0	35	66				
SLFN5	162394	broad.mit.edu	37	17	33586688	33586688	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:33586688G>C	uc002hjf.3	+	2	1096	c.979G>C	c.(979-981)GAA>CAA	p.E327Q	SLFN5_uc002hje.2_Missense_Mutation_p.E327Q|SLFN5_uc010wcg.1_Missense_Mutation_p.E327Q	NM_144975	NP_659412	Q08AF3	SLFN5_HUMAN	schlafen family member 5	327					cell differentiation		ATP binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0191)		GCCCACAAGAGAATGGACTGC	0.517		NaN											0	0	0	0.009535	0	29	107				
HSD17B1	3292	broad.mit.edu	37	17	40705230	40705230	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:40705230G>A	uc002hzw.2	+	2	1154	c.186G>A	c.(184-186)ACG>ACA	p.T62T	HSD17B1_uc002hzx.2_Silent_p.T62T|HSD17B1_uc010wgm.1_RNA|uc002hzy.2_Silent_p.N117N|HSD17B1_uc010cyi.2_Silent_p.T93T	NM_000413	NP_000404	P14061	DHB1_HUMAN	hydroxysteroid (17-beta) dehydrogenase 1	62					estrogen biosynthetic process	cytosol	binding|estradiol 17-beta-dehydrogenase activity				0		all_cancers(22;5.59e-08)|all_epithelial(22;7e-07)|Ovarian(249;0.0261)		BRCA - Breast invasive adenocarcinoma(366;0.129)	NADH(DB00157)	CCCTGGAGACGTTGCAGCTGG	0.647		NaN											0	0	0	0.01441	0	37	77				
HEXIM1	10614	broad.mit.edu	37	17	43226833	43226833	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:43226833G>C	uc002iig.2	+	1	2150	c.276G>C	c.(274-276)CAG>CAC	p.Q92H		NM_006460	NP_006451	O94992	HEXI1_HUMAN	hexamethylene bis-acetamide inducible 1	92					negative regulation of cyclin-dependent protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	cyclin-dependent protein kinase inhibitor activity|protein binding|snRNA binding			ovary(1)	1						AGAAGGGCCAGAATGGGGACG	0.682		NaN									OREG0024474	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.009096	0	4	29				
HEXIM1	10614	broad.mit.edu	37	17	43227260	43227260	+	Missense_Mutation	SNP	G	G	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:43227260G>T	uc002iig.2	+	1	2577	c.703G>T	c.(703-705)GAC>TAC	p.D235Y		NM_006460	NP_006451	O94992	HEXI1_HUMAN	hexamethylene bis-acetamide inducible 1	235	Autoinhibitory acidic region; in absence of 7SK snRNA interacts with the basic region preventing interaction with P-TEFb and modulating subcellular localization.				negative regulation of cyclin-dependent protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	cyclin-dependent protein kinase inhibitor activity|protein binding|snRNA binding			ovary(1)	1						CAAATCCGACGACACCAGCGA	0.612		NaN											1	0	1.37522e-17	0.007413	1.48524e-17	14	73				
LRRC37A2	474170	broad.mit.edu	37	17	44626216	44626216	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:44626216C>T	uc002ikn.1	+	9	3714	c.3711C>T	c.(3709-3711)TTC>TTT	p.F1237F	ARL17A_uc002iko.3_Intron|LRRC37A2_uc002ikq.1_Silent_p.F198F|LRRC37A2_uc010dax.1_Silent_p.F167F	NM_001006607	NP_001006608	A6NM11	L37A2_HUMAN	c114 SLIT-like testicular protein precursor	1237	Extracellular (Potential).					integral to membrane					0		Melanoma(429;0.211)		BRCA - Breast invasive adenocarcinoma(366;0.232)		AGCCTTCCTTCACCCAAGAGC	0.592		NaN											0	0	0	0.007413	0	15	129				
DLX4	1748	broad.mit.edu	37	17	48047109	48047109	+	Missense_Mutation	SNP	G	G	A	rs145736583		TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:48047109G>A	uc002ipv.2	+	1	548	c.277G>A	c.(277-279)GAG>AAG	p.E93K		NM_138281	NP_612138	Q92988	DLX4_HUMAN	distal-less homeobox 4 isoform a	93				MTSLPCPLPGRDASKAVFPDLAPVPSVAAAYPLGLSPTTAA SPNLSYSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQPL CGPAEHPQELEA -> GGSLSLPPEPLCARCPTKEGAAPRR PGFWGSLETQAATVWRGRHGHFSCRVRLSRGAARYSRRGQG KPGVTISAARLVFKVLSAGPLTHPAGRSRRLPRGHRLKPLS IALSLCLQCPSSVISRPRLSPGPSLSAPPYPKLAPPPVAEL RPPTAGAAVPWLWPSARFLPRVTGPIRVGAPLGAELRLVSP GAVNVGVETLHAE (in Ref. 9).	multicellular organismal development	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TCAGGAACTCGAGGCAGGTAA	0.667		NaN											0	0	0	0.020292	0	14	108				
TOB1	10140	broad.mit.edu	37	17	48941096	48941096	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:48941096C>T	uc002isw.2	-	1	318	c.283G>A	c.(283-285)GAC>AAC	p.D95N	TOB1_uc010wmy.1_Missense_Mutation_p.D95N|TOB1_uc010wmz.1_Missense_Mutation_p.D95N	NM_005749	NP_005740	P50616	TOB1_HUMAN	transducer of ERBB2, 1	95					negative regulation of cell proliferation		SH3/SH2 adaptor activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			TCAAATGGGTCGATCCAAACA	0.428		NaN									OREG0024576	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.004482	0	7	73				
AKAP1	8165	broad.mit.edu	37	17	55183156	55183156	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:55183156C>T	uc002iux.2	+	2	562	c.331C>T	c.(331-333)CTT>TTT	p.L111F	AKAP1_uc010wnl.1_Missense_Mutation_p.L111F|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Missense_Mutation_p.L111F	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	111					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					CTCGGGCATTCTTCCTAACAC	0.547		NaN											0	0	0	0.015359	0	34	55				
VEZF1	7716	broad.mit.edu	37	17	56056663	56056663	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:56056663C>T	uc002ivf.1	-	5	1131	c.988G>A	c.(988-990)GAA>AAA	p.E330K	VEZF1_uc010dcn.1_Missense_Mutation_p.E180K	NM_007146	NP_009077	Q14119	VEZF1_HUMAN	zinc finger protein 161	330					cellular defense response|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						CTGGTCTCTTCACTCATGCAT	0.284		NaN											0	0	0	0.027356	0	25	49				
NUP85	79902	broad.mit.edu	37	17	73231253	73231253	+	Nonsense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:73231253C>G	uc002jng.1	+	18	2086	c.1826C>G	c.(1825-1827)TCA>TGA	p.S609*	NUP85_uc010dgd.1_Nonsense_Mutation_p.S564*|NUP85_uc010wrv.1_Nonsense_Mutation_p.S563*|NUP85_uc002jnh.1_Nonsense_Mutation_p.S212*	NM_024844	NP_079120	Q9BW27	NUP85_HUMAN	nucleoporin 85	609					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|nuclear membrane|Nup107-160 complex|spindle	protein binding			ovary(1)	1	all_lung(278;0.14)|Lung NSC(278;0.168)		all cancers(21;3.45e-06)			GACTTGACGTCAAGAAGACCT	0.522		NaN											0	0	0	0.020292	0	8	75				
ITGB4	3691	broad.mit.edu	37	17	73738710	73738710	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:73738710G>A	uc002jpg.2	+	25	3017	c.2830G>A	c.(2830-2832)GTA>ATA	p.V944I	ITGB4_uc002jph.2_Missense_Mutation_p.V944I|ITGB4_uc002jpi.3_Missense_Mutation_p.V944I|ITGB4_uc010dgp.1_Missense_Mutation_p.R956H|ITGB4_uc002jpj.2_Missense_Mutation_p.V944I	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	944	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCTGGTGGACGTACGGGTGCC	0.692		NaN											0	0	0	0.021553	0	4	120				
DNAH17	8632	broad.mit.edu	37	17	76547693	76547693	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:76547693C>T	uc002jvv.1	-	12	1527	c.1421G>A	c.(1420-1422)CGA>CAA	p.R474Q						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CAGAATTTCTCGCACCTCTTG	0.338		NaN											0	0	0	0.006214	0	7	76				
SLC38A10	124565	broad.mit.edu	37	17	79256117	79256117	+	Missense_Mutation	SNP	G	G	A	rs141053452	byFrequency	TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:79256117G>A	uc002jzz.1	-	5	748	c.373C>T	c.(373-375)CGC>TGC	p.R125C	SLC38A10_uc002jzy.1_Missense_Mutation_p.R43C|SLC38A10_uc002kab.2_Missense_Mutation_p.R125C	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	125	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			AGGAACATGCGGAAGGTGCCG	0.682		NaN											0	0	0	0.006214	0	9	16				
PHLPP1	23239	broad.mit.edu	37	18	60642723	60642723	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr18:60642723G>C	uc002lis.2	+	17	2491	c.2313G>C	c.(2311-2313)TTG>TTC	p.L771F		NM_194449	NP_919431	O60346	PHLP1_HUMAN	PH domain and leucine rich repeat protein	1283	PP2C-like.				apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol|membrane|nucleus	metal ion binding|protein serine/threonine phosphatase activity				0						CCTTCACCTTGACCTCTGCTA	0.507		NaN											0	0	0	0.009535	0	27	91				
KDM4B	23030	broad.mit.edu	37	19	5135468	5135468	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr19:5135468C>G	uc002mbq.3	+	15	2430	c.2204C>G	c.(2203-2205)TCT>TGT	p.S735C	KDM4B_uc010xim.1_Missense_Mutation_p.S769C|KDM4B_uc002mbr.3_Missense_Mutation_p.S493C	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	735	PHD-type 1.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						TGCTTCACCTCTGGCGGTGAG	0.642		NaN											0	0	0	0.016723	0	13	37				
PTPRS	5802	broad.mit.edu	37	19	5244216	5244216	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr19:5244216G>A	uc002mbv.2	-	11	1500	c.1266C>T	c.(1264-1266)GGC>GGT	p.G422G	PTPRS_uc002mbu.1_Silent_p.G409G|PTPRS_uc010xin.1_Silent_p.G409G|PTPRS_uc002mbw.2_Silent_p.G409G|PTPRS_uc002mbx.2_Silent_p.G413G|PTPRS_uc002mby.2_Silent_p.G409G	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	422	Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GGGCCTGCTCGCCTGTGCGGG	0.711		NaN											0	0	0	0.014323	0	21	86				
MUC16	94025	broad.mit.edu	37	19	9077046	9077046	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr19:9077046C>G	uc002mkp.2	-	3	10604	c.10400G>C	c.(10399-10401)GGA>GCA	p.G3467A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3468	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCCTTGGTCTCCAGAGGGCAG	0.507		NaN											0	0	0	0.001984	0	5	24				
NCAN	1463	broad.mit.edu	37	19	19339025	19339025	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr19:19339025G>A	uc002nlz.2	+	8	2695	c.2596G>A	c.(2596-2598)GAT>AAT	p.D866N	NCAN_uc010ecc.1_Missense_Mutation_p.D430N	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	866					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GGTGGCCCTGGATACAAGCAT	0.597		NaN											0	0	0	0.007291	0	22	96				
ZNF257	113835	broad.mit.edu	37	19	22271465	22271465	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr19:22271465C>T	uc010ecx.2	+	4	1082	c.913C>T	c.(913-915)CAA>TAA	p.Q305*	ZNF257_uc010ecy.2_Nonsense_Mutation_p.Q273*	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	305	C2H2-type 5; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				TACCCTTACTCAACATAAGAG	0.393		NaN											0	0	0	0.006214	0	9	29				
PSG3	5671	broad.mit.edu	37	19	43236936	43236936	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr19:43236936G>A	uc002oue.2	-	3	841	c.709C>T	c.(709-711)CCG>TCG	p.P237S	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.P259S	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	237					defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AGATACTCACGGAGGAGATTC	0.542		NaN											0	0	0	0.01441	0	141	277				
CCDC61	729440	broad.mit.edu	37	19	46509948	46509948	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr19:46509948C>G	uc002pdw.2	+	5	534	c.534C>G	c.(532-534)ATC>ATG	p.I178M		NM_001080402	NP_001073871			coiled-coil domain containing 61											ovary(1)	1		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00221)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.164)		GCTACCTGATCCTCATCTACT	0.652		NaN											0	0	0	0.01441	0	58	110				
GRIN2D	2906	broad.mit.edu	37	19	48945175	48945175	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr19:48945175G>A	uc002pjc.3	+	11	2490	c.2402G>A	c.(2401-2403)CGG>CAG	p.R801Q	GRIN2D_uc010elx.2_Missense_Mutation_p.R36Q	NM_000836	NP_000827	O15399	NMDE4_HUMAN	N-methyl-D-aspartate receptor subunit 2D	801	Extracellular (Potential).					cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|protein binding			ovary(3)|breast(3)	6		all_epithelial(76;1.11e-06)|all_lung(116;5.79e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		all cancers(93;0.00014)|OV - Ovarian serous cystadenocarcinoma(262;0.000233)|Epithelial(262;0.0112)|GBM - Glioblastoma multiforme(486;0.0161)	L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Orphenadrine(DB01173)	CGCTGGAAGCGGCCCATCGAC	0.627		NaN											0	0	0	0.009096	0	3	37				
C2orf44	80304	broad.mit.edu	37	2	24260579	24260579	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:24260579G>C	uc002rep.2	-	2	1917	c.1786C>G	c.(1786-1788)CAA>GAA	p.Q596E	C2orf44_uc010eya.2_Missense_Mutation_p.Q596E	NM_025203	NP_079479	Q9H6R7	CB044_HUMAN	hypothetical protein LOC80304 isoform 1	596							protein binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGAAGATCTTGAGAGAGTGGA	0.403		NaN											0	0	0	0.010771	0	34	91				
SPTBN1	6711	broad.mit.edu	37	2	54855387	54855387	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:54855387G>A	uc002rxu.2	+	13	2047	c.1798G>A	c.(1798-1800)GGT>AGT	p.G600S	SPTBN1_uc002rxv.1_Missense_Mutation_p.G600S|SPTBN1_uc002rxx.2_Missense_Mutation_p.G587S	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	600	Spectrin 3.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			AGACGGGGAAGGTAAGGATGG	0.507		NaN											0	0	0	0.009096	0	3	47				
CCDC88A	55704	broad.mit.edu	37	2	55522809	55522809	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:55522809C>G	uc002ryv.2	-	31	6314	c.5472G>C	c.(5470-5472)TTG>TTC	p.L1824F	CCDC88A_uc010yoz.1_Missense_Mutation_p.L1797F|CCDC88A_uc010ypa.1_Missense_Mutation_p.L1750F|CCDC88A_uc002ryt.2_Missense_Mutation_p.L115F|CCDC88A_uc010fbw.2_Missense_Mutation_p.L326F|CCDC88A_uc002ryu.2_Missense_Mutation_p.L1079F|CCDC88A_uc002rys.2_Missense_Mutation_p.L782F|CCDC88A_uc002ryw.2_Missense_Mutation_p.L1108F|CCDC88A_uc010fby.1_Missense_Mutation_p.L676F	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	1825					activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						TGTCCTTGGTCAAAAAATCAT	0.458		NaN											0	0	0	0.01441	0	43	147				
FBXO48	554251	broad.mit.edu	37	2	68692016	68692016	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:68692016G>C	uc002seo.2	-	3	670	c.262C>G	c.(262-264)CGA>GGA	p.R88G	APLF_uc010fdf.2_5'Flank|APLF_uc002sep.2_5'Flank	NM_001024680	NP_001019851	Q5FWF7	FBX48_HUMAN	F-box protein 48	88											0						ATTTCTCTTCGGCACACAGCT	0.428		NaN											0	0	0	0.00632	0	23	140				
GPR45	11250	broad.mit.edu	37	2	105858447	105858447	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:105858447G>A	uc002tco.1	+	1	248	c.132G>A	c.(130-132)ATG>ATA	p.M44I		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	44	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						TGCTGCTGATGACCGTGGTGG	0.617		NaN											0	0	0	0.01441	0	74	193				
FMNL2	114793	broad.mit.edu	37	2	153483060	153483060	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:153483060G>C	uc002tye.2	+	17	2351	c.1984G>C	c.(1984-1986)GAG>CAG	p.E662Q	FMNL2_uc010fob.2_Missense_Mutation_p.E118Q|FMNL2_uc002tyf.2_Missense_Mutation_p.E111Q	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	662	FH2.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						GGATGAATTTGAGGAAATATT	0.358		NaN											0	0	0	0.014758	0	5	9				
AGPS	8540	broad.mit.edu	37	2	178402841	178402841	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:178402841C>G	uc002ull.2	+	20	1942	c.1895C>G	c.(1894-1896)TCT>TGT	p.S632C	AGPS_uc010zfb.1_Missense_Mutation_p.S542C	NM_003659	NP_003650	O00116	ADAS_HUMAN	alkyldihydroxyacetone phosphate synthase	632					ether lipid biosynthetic process	peroxisomal matrix|peroxisomal membrane|plasma membrane	alkylglycerone-phosphate synthase activity|flavin adenine dinucleotide binding|oxidoreductase activity			ovary(2)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0018)|Epithelial(96;0.00919)|all cancers(119;0.0358)			GAAAGTATCTCTGATGTCGGC	0.378		NaN											0	0	0	0.00632	0	25	64				
TTN	7273	broad.mit.edu	37	2	179436844	179436844	+	Missense_Mutation	SNP	G	G	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:179436844G>T	uc010zfg.1	-	275	66535	c.66311C>A	c.(66310-66312)ACT>AAT	p.T22104N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T15799N|TTN_uc010zfi.1_Missense_Mutation_p.T15732N|TTN_uc010zfj.1_Missense_Mutation_p.T15607N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23031							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTGGCTTCAGTGACCTTGAC	0.478		NaN											1	0	1.02788e-11	0.00499	1.08598e-11	13	22				
WDR75	84128	broad.mit.edu	37	2	190334854	190334854	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:190334854C>G	uc002uql.1	+	17	1932	c.1872C>G	c.(1870-1872)ATC>ATG	p.I624M	WDR75_uc002uqm.1_Missense_Mutation_p.I560M|WDR75_uc002uqn.1_Missense_Mutation_p.I402M|WDR75_uc002uqo.1_Missense_Mutation_p.I402M	NM_032168	NP_115544	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	624						nucleolus				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			AAAAGGGTATCTCCAGAGAGA	0.403		NaN											0	0	0	0.01441	0	47	87				
CCDC150	284992	broad.mit.edu	37	2	197590756	197590756	+	Missense_Mutation	SNP	C	C	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:197590756C>A	uc002utp.1	+	22	2624	c.2489C>A	c.(2488-2490)GCT>GAT	p.A830D	CCDC150_uc010zgs.1_Missense_Mutation_p.A477D|CCDC150_uc010zgt.1_Missense_Mutation_p.A247D|CCDC150_uc002utq.1_Missense_Mutation_p.A145D|CCDC150_uc002utr.1_Missense_Mutation_p.A145D	NM_001080539	NP_001074008	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	830	Potential.										0						CGCATAGAAGCTCTAAGAAAG	0.423		NaN											1	0	1.06961e-07	0.00308	1.11552e-07	7	16				
PARD3B	117583	broad.mit.edu	37	2	205983760	205983760	+	Missense_Mutation	SNP	A	A	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:205983760A>C	uc002var.1	+	7	1003	c.796A>C	c.(796-798)ACC>CCC	p.T266P	PARD3B_uc010fub.1_Missense_Mutation_p.T266P|PARD3B_uc002vao.1_Missense_Mutation_p.T266P|PARD3B_uc002vap.1_Missense_Mutation_p.T266P|PARD3B_uc002vaq.1_Missense_Mutation_p.T266P	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	266	PDZ 1.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		CGTAGACAAAACCTTTGCTCA	0.363		NaN											0	0	0	0.010504	0	17	65				
IDH1	3417	broad.mit.edu	37	2	209104705	209104705	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:209104705C>T	uc002vcs.2	-	8	1119	c.873G>A	c.(871-873)ATG>ATA	p.M291I	IDH1_uc002vct.2_Missense_Mutation_p.M291I|IDH1_uc002vcu.2_Missense_Mutation_p.M291I	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	291					2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity			central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		GCACGCTGGTCATCATGCCGA	0.527		NaN	Mis		gliobastoma 								0	0	0	0.007413	0	15	60				
SPEG	10290	broad.mit.edu	37	2	220309874	220309874	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:220309874C>G	uc010fwg.2	+	3	806	c.806C>G	c.(805-807)TCT>TGT	p.S269C	SPEG_uc002vlm.2_RNA|SPEG_uc010fwh.1_Intron|SPEG_uc002vln.1_5'UTR	NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	269					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CGGGCGCTCTCTATCCACGTG	0.612		NaN											0	0	0	0.004672	0	3	8				
MFF	56947	broad.mit.edu	37	2	228194464	228194464	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:228194464G>A	uc002vos.2	+	3	421	c.3G>A	c.(1-3)ATG>ATA	p.M1I	MFF_uc002vot.2_Intron|MFF_uc002vou.2_Missense_Mutation_p.M1I|MFF_uc002vov.2_Intron|MFF_uc002vow.2_Intron|MFF_uc002vox.2_Intron|MFF_uc002voy.2_Missense_Mutation_p.M1I|MFF_uc002voz.2_Intron	NM_020194	NP_064579	Q9GZY8	MFF_HUMAN	mitochondrial fission factor	1	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane				large_intestine(1)	1						GTATTTAAATGAGTAAAGGAA	0.343		NaN											0	0	0	0.012319	0	17	53				
THAP4	51078	broad.mit.edu	37	2	242572898	242572898	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr2:242572898C>T	uc002wbt.2	-	2	897	c.674G>A	c.(673-675)GGA>GAA	p.G225E		NM_015963	NP_057047	Q8WY91	THAP4_HUMAN	THAP domain containing 4 isoform 1	225							DNA binding|metal ion binding				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		CGCCCCAGATCCTGGGGGCGT	0.557		NaN											0	0	0	0.008361	0	28	63				
C20orf96	140680	broad.mit.edu	37	20	259903	259903	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr20:259903G>A	uc002wde.1	-	5	514	c.375C>T	c.(373-375)CTC>CTT	p.L125L	C20orf96_uc002wdc.2_Silent_p.L72L|C20orf96_uc002wdd.2_Silent_p.L90L|C20orf96_uc010zpi.1_Silent_p.L72L|C20orf96_uc010zpj.1_Silent_p.L90L|C20orf96_uc010zpk.1_Silent_p.L63L	NM_153269	NP_695001	Q9NUD7	CT096_HUMAN	hypothetical protein LOC140680	125	Potential.										0		all_cancers(10;0.00959)|Lung NSC(37;0.227)	OV - Ovarian serous cystadenocarcinoma(29;0.149)			GCTCCCGGTTGAGCTTGCTGA	0.672		NaN											0	0	0	0.027356	0	23	187				
SLC32A1	140679	broad.mit.edu	37	20	37357147	37357147	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr20:37357147C>T	uc002xjc.2	+	2	1706	c.1443C>T	c.(1441-1443)CTC>CTT	p.L481L		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	481	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	TGCGCCTGCTCTGGCGCAAGC	0.647		NaN											0	0	0	0.021553	0	5	70				
CDH26	60437	broad.mit.edu	37	20	58545159	58545159	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr20:58545159G>A	uc002ybe.2	+	3	449	c.149G>A	c.(148-150)CGG>CAG	p.R50Q	CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	50	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			CAGCCTCTACGGCGATCCAAG	0.498		NaN											0	0	0	0.01441	0	42	98				
SFRS15	57466	broad.mit.edu	37	21	33043774	33043774	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr21:33043774C>T	uc002ypd.2	-	20	3808	c.3382G>A	c.(3382-3384)GAG>AAG	p.E1128K	SFRS15_uc002ype.2_Missense_Mutation_p.E1106K|SFRS15_uc010glu.2_Missense_Mutation_p.E1113K	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	1128						nucleus	nucleotide binding|RNA binding				0						GAGGTAGCCTCAGCAGGTAAC	0.498		NaN											0	0	0	0.028581	0	12	36				
DSCAM	1826	broad.mit.edu	37	21	41450881	41450881	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr21:41450881C>T	uc002yyq.1	-	26	4896	c.4444G>A	c.(4444-4446)GAG>AAG	p.E1482K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1482	Extracellular (Potential).|Fibronectin type-III 6.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GCAAACAGCTCCTGCTCCTTT	0.582		NaN											0	0	0	0.007291	0	19	47				
NIPSNAP1	8508	broad.mit.edu	37	22	29957498	29957498	+	Silent	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr22:29957498G>C	uc003afx.3	-	6	649	c.576C>G	c.(574-576)CTC>CTG	p.L192L	NIPSNAP1_uc011akp.1_Silent_p.L172L	NM_003634	NP_003625	Q9BPW8	NIPS1_HUMAN	nipsnap homolog 1	192								p.?(1)		skin(1)	1						GAGGCACCTTGAGCTTGTATG	0.577		NaN											0	0	0	0.01441	0	44	83				
GATSL3	652968	broad.mit.edu	37	22	30682066	30682066	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr22:30682066C>T	uc003ahd.2	-	7	895	c.765G>A	c.(763-765)CTG>CTA	p.L255L	GATSL3_uc003ahc.2_Silent_p.L217L|GATSL3_uc003ahe.2_Silent_p.L218L|GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_RNA|GATSL3_uc003ahh.2_RNA|GATSL3_uc010gvq.2_RNA|GATSL3_uc003ahi.2_Silent_p.L390L	NM_001037666	NP_001032755	Q8WTX7	GATL3_HUMAN	GATS protein-like 3	255										breast(1)	1						AGGAGCTGGTCAGCAGGAGGT	0.672		NaN											0	0	0	0.021553	0	4	21				
DEPDC5	9681	broad.mit.edu	37	22	32242914	32242914	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr22:32242914C>T	uc003als.2	+	31	3231	c.3089C>T	c.(3088-3090)TCA>TTA	p.S1030L	DEPDC5_uc011als.1_Missense_Mutation_p.S961L|DEPDC5_uc011alu.1_Missense_Mutation_p.S1039L|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.S1030L|DEPDC5_uc003alu.2_Missense_Mutation_p.S479L|DEPDC5_uc003alv.2_RNA|DEPDC5_uc011alw.1_Missense_Mutation_p.S360L|DEPDC5_uc003alw.2_Missense_Mutation_p.S328L|DEPDC5_uc011alx.1_Intron|DEPDC5_uc010gwk.2_Missense_Mutation_p.S34L	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	1030					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						AAGGGAACCTCAGCTCTCTCT	0.552		NaN											0	0	0	0.028581	0	14	68				
ANKRD54	129138	broad.mit.edu	37	22	38234561	38234561	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr22:38234561C>T	uc003auc.2	-	3	479	c.421G>A	c.(421-423)GAC>AAC	p.D141N	ANKRD54_uc003aud.2_Missense_Mutation_p.D18N	NM_138797	NP_620152	Q6NXT1	ANR54_HUMAN	ankyrin repeat domain 54	141											0	Melanoma(58;0.045)					CGGCCCTTGTCATCAGCTGCA	0.577		NaN											0	0	0	0.010729	0	9	23				
PIM3	415116	broad.mit.edu	37	22	50356727	50356727	+	Silent	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr22:50356727C>G	uc003bjb.2	+	6	1386	c.933C>G	c.(931-933)CTC>CTG	p.L311L	PIM3_uc011arj.1_Silent_p.L74L	NM_001001852	NP_001001852	Q86V86	PIM3_HUMAN	serine/threonine protein kinase pim-3	311					cell cycle|negative regulation of apoptosis|regulation of mitotic cell cycle		ATP binding|protein binding|protein serine/threonine kinase activity				0		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.196)|LUAD - Lung adenocarcinoma(64;0.247)		TGTGCACCCTCGACCCTGATG	0.677		NaN											0	0	0	0.00308	0	7	22				
PLXNB2	23654	broad.mit.edu	37	22	50714172	50714172	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr22:50714172C>G	uc003bkv.3	-	37	5584	c.5478G>C	c.(5476-5478)CAG>CAC	p.Q1826H	PLXNB2_uc003bkt.1_Missense_Mutation_p.Q618H|PLXNB2_uc003bku.1_Missense_Mutation_p.Q811H	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1826	Cytoplasmic (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CAGCGGCAATCTGCTGCAGGC	0.597		NaN									OREG0026679	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.013537	0	10	55				
ATP2B2	491	broad.mit.edu	37	3	10401790	10401790	+	Silent	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:10401790G>C	uc003bvt.2	-	13	2116	c.1677C>G	c.(1675-1677)GGC>GGG	p.G559G	ATP2B2_uc003bvv.2_Silent_p.G514G|ATP2B2_uc003bvw.2_Silent_p.G514G|ATP2B2_uc010hdo.2_Silent_p.G264G	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	559	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GAGGCAGGGCGCCCTCCTTCT	0.687		NaN											0	0	0	0.00874	0	30	53				
ULK4	54986	broad.mit.edu	37	3	41961238	41961238	+	Missense_Mutation	SNP	A	A	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:41961238A>G	uc003ckv.3	-	6	815	c.614T>C	c.(613-615)TTG>TCG	p.L205S	ULK4_uc003ckw.2_Missense_Mutation_p.L205S|ULK4_uc003ckx.1_Missense_Mutation_p.L205S	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	205	Protein kinase.						ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		CAGACAGCCCAAAGACCAGAG	0.413		NaN											0	0	0	0.019004	0	26	83				
LTF	4057	broad.mit.edu	37	3	46497843	46497843	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:46497843C>T	uc003cpq.2	-	3	291	c.253G>A	c.(253-255)GAG>AAG	p.E85K	LTF_uc003fzr.2_Missense_Mutation_p.E41K|LTF_uc010hjh.2_Missense_Mutation_p.E85K|LTF_uc003cpr.2_Missense_Mutation_p.E72K	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	85	Transferrin-like 1.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	AGGCCTGCCTCGTATATGAAA	0.577		NaN											0	0	0	0.019004	0	25	84				
PLXNB1	5364	broad.mit.edu	37	3	48465275	48465275	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:48465275G>A	uc003csw.2	-	3	1016	c.746C>T	c.(745-747)TCT>TTT	p.S249F	PLXNB1_uc003csu.2_Missense_Mutation_p.S249F|PLXNB1_uc003csx.2_Missense_Mutation_p.S249F|PLXNB1_uc010hjx.1_RNA	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	249	Extracellular (Potential).|Sema.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		ACACACTCGAGATACATAGGC	0.612		NaN											0	0	0	0.027894	0	36	74				
SEMA3F	6405	broad.mit.edu	37	3	50220147	50220147	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:50220147C>T	uc003cyj.2	+	9	1032	c.834C>T	c.(832-834)TTC>TTT	p.F278F	SEMA3F_uc003cyk.2_Silent_p.F247F	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	278	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		TTTACTTCTTCTTCCGTGAGC	0.627		NaN											0	0	0	0.01441	0	47	75				
ADAMTS9	56999	broad.mit.edu	37	3	64536627	64536627	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:64536627G>A	uc003dmg.2	-	31	4842	c.4810C>T	c.(4810-4812)CGT>TGT	p.R1604C	ADAMTS9_uc011bfo.1_Missense_Mutation_p.R1576C|ADAMTS9_uc003dmh.1_Missense_Mutation_p.R1433C|ADAMTS9_uc011bfp.1_Missense_Mutation_p.R515C	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1604	TSP type-1 13.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CAGCTTTCACGGTCCACCGGC	0.572		NaN											0	0	0	0.01441	0	111	113				
ADAMTS9	56999	broad.mit.edu	37	3	64599095	64599095	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:64599095C>T	uc003dmg.2	-	22	3312	c.3280G>A	c.(3280-3282)GAG>AAG	p.E1094K	ADAMTS9_uc011bfo.1_Missense_Mutation_p.E1066K|ADAMTS9_uc003dmh.1_Missense_Mutation_p.E923K|ADAMTS9_uc011bfp.1_Missense_Mutation_p.E5K	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1094	TSP type-1 5.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		GGCTTGGTCTCAGGGTCACAC	0.488		NaN											0	0	0	0.010504	0	17	102				
FAM162A	26355	broad.mit.edu	37	3	122123148	122123148	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:122123148G>A	uc003eez.2	+	3	291	c.201G>A	c.(199-201)CAG>CAA	p.Q67Q	FAM162A_uc011bjq.1_Silent_p.Q67Q	NM_014367	NP_055182	Q96A26	F162A_HUMAN	growth and transformation-dependent protein	67						integral to membrane				ovary(1)	1						CGGATTGGCAGAAAAAGATCC	0.373		NaN											0	0	0	0.008291	0	9	20				
UROC1	131669	broad.mit.edu	37	3	126202223	126202223	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:126202223C>G	uc003eiz.1	-	19	1911	c.1879G>C	c.(1879-1881)GTC>CTC	p.V627L	UROC1_uc010hsi.1_Missense_Mutation_p.V687L	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	627					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CCATTGGAGACATCCCAGCTG	0.617		NaN											0	0	0	0.021553	0	6	43				
RAB43	339122	broad.mit.edu	37	3	128853792	128853792	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:128853792G>A	uc003elo.1	-	8	635	c.424C>T	c.(424-426)CCT>TCT	p.P142S	ISY1_uc010hsz.1_Intron|ISY1_uc003elp.1_Missense_Mutation_p.P142S|ISY1_uc010hta.1_Missense_Mutation_p.P164S	NM_020701	NP_065752	Q86YS6	RAB43_HUMAN	ISY1 splicing factor homolog	Error:Variant_position_missing_in_Q86YS6_after_alignment					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			lung(1)	1						CTGGGAGGAGGAAGAGCTATA	0.453		NaN											0	0	0	0.028581	0	14	30				
COL6A6	131873	broad.mit.edu	37	3	130282320	130282320	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:130282320G>A	uc010htl.2	+	2	504	c.473G>A	c.(472-474)GGA>GAA	p.G158E		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	158	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CGGAAAGACGGAGTGAAAATC	0.498		NaN											0	0	0	0.009096	0	4	30				
PPP2R3A	5523	broad.mit.edu	37	3	135720804	135720804	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:135720804C>T	uc003eqv.1	+	2	1029	c.464C>T	c.(463-465)TCA>TTA	p.S155L	PPP2R3A_uc011blz.1_Intron	NM_002718	NP_002709	Q06190	P2R3A_HUMAN	protein phosphatase 2, regulatory subunit B'',	155					protein dephosphorylation	protein phosphatase type 2A complex	calcium ion binding|protein binding|protein phosphatase type 2A regulator activity			ovary(3)|pancreas(1)|lung(1)|breast(1)|skin(1)	7						AATAGGAGGTCAGTTGATTTG	0.398		NaN											0	0	0	0.001984	0	6	34				
CPA3	1359	broad.mit.edu	37	3	148596524	148596524	+	Missense_Mutation	SNP	T	T	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:148596524T>C	uc003ewm.2	+	5	515	c.463T>C	c.(463-465)TAT>CAT	p.Y155H		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	155					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			TAATCCACTATATGTTCTGAA	0.313		NaN											0	0	0	0.007413	0	16	17				
IGSF10	285313	broad.mit.edu	37	3	151161338	151161338	+	Silent	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:151161338C>G	uc011bod.1	-	5	5397	c.5397G>C	c.(5395-5397)GTG>GTC	p.V1799V	IGSF10_uc011bob.1_5'Flank|IGSF10_uc011boc.1_5'Flank	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1799	Ig-like C2-type 4.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CGTCAACCGTCACCACAGCCT	0.512		NaN											0	0	0	0.021523	0	22	45				
IGSF10	285313	broad.mit.edu	37	3	151166475	151166475	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:151166475C>G	uc011bod.1	-	4	1294	c.1294G>C	c.(1294-1296)GAC>CAC	p.D432H		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	432					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GAAATTTGGTCTTGCATTAAC	0.428		NaN											0	0	0	0.024245	0	13	22				
PIK3CA	5290	broad.mit.edu	37	3	178928225	178928225	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08			C	G	C	C		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:178928225C>G	uc003fjk.2	+	9	1568	c.1411C>G	c.(1411-1413)CCA>GCA	p.P471A		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	471	C2 PI3K-type.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.P471A(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TTAGGAAACTCCATGCTTAGA	0.368		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			0	0	0	0.024334	0	26	21		Valid		
TPRG1	285386	broad.mit.edu	37	3	188933083	188933083	+	Silent	SNP	G	G	A	rs141310543		TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:188933083G>A	uc003frv.1	+	8	1440	c.213G>A	c.(211-213)CCG>CCA	p.P71P	TPRG1_uc003frw.1_Silent_p.P71P	NM_198485	NP_940887	Q6ZUI0	TPRG1_HUMAN	tumor protein p63 regulated 1	71											0	all_cancers(143;6.12e-12)|all_hematologic(3;0.0359)|Ovarian(172;0.0925)	all_lung(153;8.23e-09)|Lung NSC(153;3.55e-06)|all_neural(597;0.0019)|Myeloproliferative disorder(1037;0.0255)	Lung(62;6.93e-06)	GBM - Glioblastoma multiforme(93;4.77e-14)		CCACACAGCCGGGGGCCATTG	0.488		NaN											0	0	0	0.017118	0	25	23				
CLDN1	9076	broad.mit.edu	37	3	190026071	190026071	+	Missense_Mutation	SNP	C	C	G	rs147881276		TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr3:190026071C>G	uc003fsh.2	-	4	851	c.631G>C	c.(631-633)GTG>CTG	p.V211L		NM_021101	NP_066924	O95832	CLD1_HUMAN	claudin 1	211	Cytoplasmic (Potential).|Interactions with TJP1, TJP2, TJP3 and INADL (By similarity).				calcium-independent cell-cell adhesion|interspecies interaction between organisms	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity			lung(1)	1	all_cancers(143;2.95e-10)|Ovarian(172;0.0512)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.015)		CTGTGTCACACGTAGTCTTTC	0.448		NaN											0	0	0	0.010818	0	22	150				
SLC34A2	10568	broad.mit.edu	37	4	25664188	25664188	+	Silent	SNP	A	A	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:25664188A>G	uc003grr.2	+	2	147	c.66A>G	c.(64-66)GCA>GCG	p.A22A	SLC34A2_uc003grs.2_Silent_p.A22A|SLC34A2_uc010iev.2_Silent_p.A22A	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	22	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				AAGGGGCCGCAGGTCAGCAGC	0.547		NaN											0	0	0	0.014758	0	3	102				
N4BP2	55728	broad.mit.edu	37	4	40146258	40146258	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:40146258C>G	uc003guy.3	+	16	5319	c.4981C>G	c.(4981-4983)CTT>GTT	p.L1661V	N4BP2_uc010ifq.2_Missense_Mutation_p.L1581V|N4BP2_uc010ifr.2_Missense_Mutation_p.L1564V	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	1661						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						TTAGGGTACTCTTCATGAGCA	0.428		NaN											0	0	0	0.007291	0	24	62				
FRAS1	80144	broad.mit.edu	37	4	79462137	79462137	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:79462137G>A	uc003hlb.2	+	74	12338	c.11898G>A	c.(11896-11898)GTG>GTA	p.V3966V		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3961	Cytoplasmic (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						AGAAGAACGTGAATAGACACT	0.498		NaN											0	0	0	0.00308	0	6	98				
CENPE	1062	broad.mit.edu	37	4	104082321	104082321	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:104082321C>T	uc003hxb.1	-	20	2143	c.2053G>A	c.(2053-2055)GAT>AAT	p.D685N	CENPE_uc003hxc.1_Missense_Mutation_p.D660N	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	685	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TTCTCCAGATCAACTTGCATT	0.313		NaN											0	0	0	0.001984	0	6	16				
CENPE	1062	broad.mit.edu	37	4	104082409	104082409	+	Splice_Site	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:104082409C>T	uc003hxb.1	-	20	2056	c.1966_splice	c.e20-1	p.K656_splice	CENPE_uc003hxc.1_Splice_Site_p.K631_splice	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E						blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		CAAGTTCTTTCTATTGAGAAA	0.303		NaN											0	0	0	0.009096	0	3	13				
SEC24B	10427	broad.mit.edu	37	4	110415839	110415839	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:110415839C>T	uc003hzk.2	+	6	1370	c.1315C>T	c.(1315-1317)CCA>TCA	p.P439S	SEC24B_uc003hzl.2_Missense_Mutation_p.P404S|SEC24B_uc011cfp.1_Missense_Mutation_p.P470S|SEC24B_uc011cfq.1_Missense_Mutation_p.P439S|SEC24B_uc011cfr.1_Missense_Mutation_p.P404S	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	439					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		TGCTTCTGCTCCAGCTCCAGC	0.488		NaN											0	0	0	0.01441	0	40	107				
FAT4	79633	broad.mit.edu	37	4	126238820	126238820	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126238820C>T	uc003ifj.3	+	1	1254	c.1254C>T	c.(1252-1254)AGC>AGT	p.S418S		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	418	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CGAACCTGAGCCTAATCAAGG	0.597		NaN									OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.013537	0	11	27				
FAT4	79633	broad.mit.edu	37	4	126238826	126238826	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126238826C>T	uc003ifj.3	+	1	1260	c.1260C>T	c.(1258-1260)ATC>ATT	p.I420I		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	420	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGAGCCTAATCAAGGTGGCCA	0.607		NaN									OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.020292	0	12	29				
FAT4	79633	broad.mit.edu	37	4	126239094	126239094	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126239094C>G	uc003ifj.3	+	1	1528	c.1528C>G	c.(1528-1530)CTG>GTG	p.L510V		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	510	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAATGCTAATCTGCGTTACAG	0.557		NaN									OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.016522	0	19	53				
FAT4	79633	broad.mit.edu	37	4	126239141	126239141	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126239141C>G	uc003ifj.3	+	1	1575	c.1575C>G	c.(1573-1575)ATC>ATG	p.I525M		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	525	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GGTTCCATATCAGTGAACATA	0.537		NaN									OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.015359	0	25	71				
FAT4	79633	broad.mit.edu	37	4	126239282	126239282	+	Silent	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126239282C>G	uc003ifj.3	+	1	1716	c.1716C>G	c.(1714-1716)CTC>CTG	p.L572L		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	572	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TAGTAACTCTCCTAGATGTGA	0.498		NaN									OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.008871	0	18	44				
FAT4	79633	broad.mit.edu	37	4	126239473	126239473	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126239473C>T	uc003ifj.3	+	1	1907	c.1907C>T	c.(1906-1908)CCT>CTT	p.P636L		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	636	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CGTCTGGATCCTGTGTCTGGG	0.567		NaN											0	0	0	0.012319	0	21	34				
FAT4	79633	broad.mit.edu	37	4	126239494	126239494	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126239494C>G	uc003ifj.3	+	1	1928	c.1928C>G	c.(1927-1929)ACT>AGT	p.T643S		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	643	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGGTTGAGTACTATTTCCTCC	0.552		NaN											0	0	0	0.006122	0	17	29				
FAT4	79633	broad.mit.edu	37	4	126239578	126239578	+	Nonsense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126239578C>G	uc003ifj.3	+	1	2012	c.2012C>G	c.(2011-2013)TCA>TGA	p.S671*		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	671	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCCCAGTCATCAATGGCTCGC	0.488		NaN											0	0	0	0.00632	0	24	51				
FAT4	79633	broad.mit.edu	37	4	126239780	126239780	+	Silent	SNP	C	C	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126239780C>A	uc003ifj.3	+	1	2214	c.2214C>A	c.(2212-2214)GTC>GTA	p.V738V		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	738	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GGTTTCAGGTCAATGCTCAGA	0.453		NaN											1	0	3.27435e-08	0.020292	3.4296e-08	15	39				
FAT4	79633	broad.mit.edu	37	4	126240344	126240344	+	Silent	SNP	C	C	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126240344C>A	uc003ifj.3	+	1	2778	c.2778C>A	c.(2776-2778)GGC>GGA	p.G926G		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	926	Cadherin 9.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GTGTCAATGGCATGGTACTCT	0.473		NaN											1	0	0.000978159	0.010729	0.00101146	8	40				
FAT4	79633	broad.mit.edu	37	4	126240492	126240492	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126240492C>T	uc003ifj.3	+	1	2926	c.2926C>T	c.(2926-2928)CTC>TTC	p.L976F		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	976	Cadherin 9.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGTCCCACAGCTCTCCTCTAG	0.443		NaN											0	0	0	0.014323	0	20	53				
FAT4	79633	broad.mit.edu	37	4	126240499	126240499	+	Missense_Mutation	SNP	C	C	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126240499C>A	uc003ifj.3	+	1	2933	c.2933C>A	c.(2932-2934)TCT>TAT	p.S978Y		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	978	Cadherin 9.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAGCTCTCCTCTAGTGTCATC	0.453		NaN											1	0	4.26978e-12	0.01892	4.53081e-12	22	55				
FAT4	79633	broad.mit.edu	37	4	126240563	126240563	+	Silent	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126240563C>G	uc003ifj.3	+	1	2997	c.2997C>G	c.(2995-2997)CTC>CTG	p.L999L		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	999	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TTGACCAACTCTCTTATGAAG	0.408		NaN											0	0	0	0.010771	0	34	85				
FAT4	79633	broad.mit.edu	37	4	126240606	126240606	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126240606C>G	uc003ifj.3	+	1	3040	c.3040C>G	c.(3040-3042)CGA>GGA	p.R1014G		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1014	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGTGAATTCTCGATTCTTTAA	0.383		NaN											0	0	0	0.00632	0	27	61				
FAT4	79633	broad.mit.edu	37	4	126240753	126240753	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126240753C>G	uc003ifj.3	+	1	3187	c.3187C>G	c.(3187-3189)CAA>GAA	p.Q1063E		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1063	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCGTGAACTTCAAGACAGATA	0.373		NaN											0	0	0	0.01441	0	46	86				
FAT4	79633	broad.mit.edu	37	4	126240826	126240826	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126240826C>G	uc003ifj.3	+	1	3260	c.3260C>G	c.(3259-3261)ACT>AGT	p.T1087S		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1087	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GTGAATGTTACTGTAATTTTA	0.393		NaN											0	0	0	0.013114	0	38	100				
FAT4	79633	broad.mit.edu	37	4	126241103	126241103	+	Silent	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:126241103C>G	uc003ifj.3	+	1	3537	c.3537C>G	c.(3535-3537)GTC>GTG	p.V1179V		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1179	Cadherin 11.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GCTTTACAGTCATAGCAACAG	0.428		NaN											0	0	0	0.010771	0	36	69				
HSPA4L	22824	broad.mit.edu	37	4	128722997	128722997	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:128722997G>C	uc003ifm.2	+	6	840	c.587G>C	c.(586-588)AGA>ACA	p.R196T	HSPA4L_uc010iny.1_Missense_Mutation_p.R155T|HSPA4L_uc011cgr.1_Missense_Mutation_p.R163T	NM_014278	NP_055093	O95757	HS74L_HUMAN	heat shock 70kDa protein 4-like	196					protein folding|response to unfolded protein	cytoplasm|nucleus	ATP binding|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						GAGAAACCAAGAAATGTAGTA	0.328		NaN											0	0	0	0.006122	0	15	13				
OTUD4	54726	broad.mit.edu	37	4	146059006	146059006	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:146059006G>A	uc003ika.3	-	21	2864	c.2726C>T	c.(2725-2727)ACT>ATT	p.T909I	OTUD4_uc003ijz.3_Missense_Mutation_p.T908I	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	973							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					AACAGGCACAGTTTCTCTCTC	0.463		NaN											0	0	0	0.001984	0	5	137				
FGA	2243	broad.mit.edu	37	4	155506692	155506692	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:155506692C>T	uc003iod.1	-	5	1947	c.1889G>A	c.(1888-1890)AGA>AAA	p.R630K	FGA_uc003ioe.1_Missense_Mutation_p.R630K|FGA_uc003iof.1_3'UTR	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	630	By similarity.|Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	gtggatacctctgaCAGGGCG	0.239		NaN											0	0	0	0.008871	0	19	51				
ODZ3	55714	broad.mit.edu	37	4	183710449	183710449	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr4:183710449C>T	uc003ivd.1	+	24	5545	c.5508C>T	c.(5506-5508)ACC>ACT	p.T1836T		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1836	YD 5.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AGCGAGGCACCACTAGCGAGA	0.512		NaN											0	0	0	0.006214	0	7	43				
MARCH6	10299	broad.mit.edu	37	5	10390534	10390534	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr5:10390534G>C	uc003jet.1	+	6	681	c.498G>C	c.(496-498)CAG>CAC	p.Q166H	MARCH6_uc011cmu.1_Missense_Mutation_p.Q118H|MARCH6_uc003jeu.1_5'UTR|MARCH6_uc011cmv.1_Missense_Mutation_p.Q61H	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	166	Cytoplasmic (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						TGAGAGAGCAGATAGTCCATG	0.488		NaN											0	0	0	0.01441	0	42	143				
OCLN	4950	broad.mit.edu	37	5	68805036	68805036	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr5:68805036C>G	uc003jwu.2	+	3	555	c.119C>G	c.(118-120)TCT>TGT	p.S40C	OCLN_uc003jwv.3_Missense_Mutation_p.S40C	NM_002538	NP_002529			occludin												0		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		CCAATGCTCTCTCAGCCAGCC	0.403		NaN											0	0	0	0.021022	0	36	81				
ATP6AP1L	92270	broad.mit.edu	37	5	81608660	81608660	+	Missense_Mutation	SNP	T	T	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr5:81608660T>C	uc003khv.2	+	9	1687	c.362T>C	c.(361-363)ATT>ACT	p.I121T	ATP6AP1L_uc003khw.2_Missense_Mutation_p.I121T	NM_001017971	NP_001017971	Q52LC2	VAS1L_HUMAN	ATPase, H+ transporting, lysosomal accessory	121					ATP hydrolysis coupled proton transport	integral to membrane|proton-transporting V-type ATPase, V1 domain	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0						GTCACTTTTATTGATTTCCAG	0.502		NaN									OREG0016689	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.013537	0	9	38				
ARRDC3	57561	broad.mit.edu	37	5	90670966	90670966	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr5:90670966C>G	uc003kjz.2	-	5	883	c.643G>C	c.(643-645)GAG>CAG	p.E215Q		NM_020801	NP_065852	Q96B67	ARRD3_HUMAN	arrestin domain containing 3	215					signal transduction	cytoplasm	protein binding			ovary(1)|breast(1)	2		all_cancers(142;2.22e-05)|all_epithelial(76;1.58e-07)|all_lung(232;0.000521)|Lung NSC(167;0.000548)|Ovarian(174;0.0798)|Colorectal(57;0.207)		OV - Ovarian serous cystadenocarcinoma(54;4.56e-30)|Epithelial(54;7.55e-26)|all cancers(79;3.63e-22)		GAGCAGTTCTCAATCTCAGCA	0.388		NaN											0	0	0	0.009096	0	4	33				
SAR1B	51128	broad.mit.edu	37	5	133942733	133942733	+	Silent	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr5:133942733C>G	uc003kzq.2	-	8	751	c.504G>C	c.(502-504)CTG>CTC	p.L168L	SAR1B_uc003kzr.2_Silent_p.L168L	NM_001033503	NP_001028675	Q9Y6B6	SAR1B_HUMAN	SAR1a gene homolog 2	168					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	cytosol|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi cisterna membrane	GTP binding|GTPase activity|metal ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GTCGGGCATTCAGTTCTTTCA	0.403		NaN											0	0	0	0.007291	0	24	62				
PCDHB10	56126	broad.mit.edu	37	5	140572567	140572567	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr5:140572567G>A	uc003lix.2	+	1	616	c.442G>A	c.(442-444)GAA>AAA	p.E148K		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	148	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAATACAGCTGAAGGGACAGC	0.413		NaN											0	0	0	0.00632	0	27	42				
NR3C1	2908	broad.mit.edu	37	5	142680325	142680325	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr5:142680325C>T	uc003lmz.2	-	5	1964	c.1472G>A	c.(1471-1473)CGA>CAA	p.R491Q	NR3C1_uc003lmy.2_Missense_Mutation_p.R492Q|NR3C1_uc003lna.2_Missense_Mutation_p.R491Q|NR3C1_uc003lnb.2_Missense_Mutation_p.R491Q|NR3C1_uc011dbk.1_Missense_Mutation_p.R94Q|NR3C1_uc003lnc.2_Missense_Mutation_p.R491Q|NR3C1_uc003lnd.2_Missense_Mutation_p.R491Q|NR3C1_uc003lne.2_Missense_Mutation_p.R491Q|NR3C1_uc003lnf.2_Missense_Mutation_p.R492Q	NM_000176	NP_000167	P04150	GCR_HUMAN	glucocorticoid receptor isoform alpha	491	Hinge.				chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		Amcinonide(DB00288)|Betamethasone(DB00443)|Budesonide(DB01222)|Dexamethasone(DB01234)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluticasone Propionate(DB00588)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mifepristone(DB00834)|Mometasone(DB00764)|Prednisone(DB00635)	CTTTGTTTTTCGAGCTGTGGG	0.348		NaN											0	0	0	0.004672	0	3	7				
FBXO38	81545	broad.mit.edu	37	5	147821699	147821699	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr5:147821699G>A	uc003lpf.1	+	22	3676	c.3556G>A	c.(3556-3558)GAC>AAC	p.D1186N	FBXO38_uc003lpg.1_Missense_Mutation_p.D1111N|FBXO38_uc003lph.2_Missense_Mutation_p.D941N	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	1186						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTTGAAGATGACTACATTTA	0.458		NaN											0	0	0	0.016723	0	12	80				
PPARD	5467	broad.mit.edu	37	6	35392554	35392554	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr6:35392554G>C	uc003okm.2	+	7	1385	c.1076G>C	c.(1075-1077)GGA>GCA	p.G359A	PPARD_uc003okl.2_Missense_Mutation_p.G359A|PPARD_uc003okn.2_Missense_Mutation_p.G359A|PPARD_uc011dtb.1_Missense_Mutation_p.G320A|PPARD_uc011dtc.1_Missense_Mutation_p.G261A	NM_006238	NP_006229	Q03181	PPARD_HUMAN	peroxisome proliferative activated receptor,	359	Ligand-binding.				apoptosis|axon ensheathment|cholesterol metabolic process|decidualization|embryo implantation|fatty acid beta-oxidation|fatty acid transport|generation of precursor metabolites and energy|glucose metabolic process|glucose transport|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fat cell differentiation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|linoleic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1					Icosapent(DB00159)|Sulindac(DB00605)|Treprostinil(DB00374)	ATTCTGTGTGGAGGTGAGTGA	0.562		NaN											0	0	0	0.008871	0	15	22				
TDRD6	221400	broad.mit.edu	37	6	46657989	46657989	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr6:46657989G>A	uc003oyj.2	+	1	2124	c.2124G>A	c.(2122-2124)CAG>CAA	p.Q708Q	TDRD6_uc010jze.2_Silent_p.Q702Q	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	708					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			AAGGAGAGCAGAAAGCCAAGA	0.408		NaN											0	0	0	0.006122	0	15	24				
NT5E	4907	broad.mit.edu	37	6	86194979	86194979	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr6:86194979G>A	uc003pko.3	+	4	1334	c.778G>A	c.(778-780)GCT>ACT	p.A260T	NT5E_uc010kbr.2_Missense_Mutation_p.A260T	NM_002526	NP_002517	P21589	5NTD_HUMAN	5' nucleotidase, ecto precursor	260					DNA metabolic process|purine base metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	anchored to membrane|cytoplasm|membrane fraction|plasma membrane	5'-nucleotidase activity|nucleotide binding			ovary(3)|central_nervous_system(1)	4		all_cancers(76;0.000215)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0427)		BRCA - Breast invasive adenocarcinoma(108;0.0417)	Pentoxifylline(DB00806)	AGAGGTGCCTGCTGGGAAGTA	0.502		NaN											0	0	0	0.006214	0	9	55				
FOXO3	2309	broad.mit.edu	37	6	108984897	108984897	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr6:108984897G>A	uc003psk.2	+	3	1177	c.861G>A	c.(859-861)CAG>CAA	p.Q287Q	FOXO3_uc003psn.2_Intron|FOXO3_uc003psm.2_Silent_p.Q287Q|FOXO3_uc011ean.1_Silent_p.Q67Q|FOXO3_uc010kdj.1_Silent_p.Q67Q	NM_201559	NP_963853	O43524	FOXO3_HUMAN	forkhead box O3A	287					antral ovarian follicle growth|apoptosis|embryo development|glucose homeostasis|induction of apoptosis|initiation of primordial ovarian follicle growth|insulin receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|oocyte maturation|ovulation from ovarian follicle|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			central_nervous_system(4)|lung(2)	6		all_cancers(87;1.78e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;3.88e-05)|Colorectal(196;0.0294)|all_lung(197;0.0487)|Lung SC(18;0.152)		Epithelial(106;0.000759)|all cancers(137;0.00121)|BRCA - Breast invasive adenocarcinoma(108;0.00163)|OV - Ovarian serous cystadenocarcinoma(136;0.00718)		GTCCCTCCCAGCTCTCCAAGT	0.597		NaN											0	0	0	0.006122	0	12	18				
SESN1	27244	broad.mit.edu	37	6	109308772	109308772	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr6:109308772C>G	uc003pst.3	-	10	1546	c.1454G>C	c.(1453-1455)AGA>ACA	p.R485T	SESN1_uc003psu.2_Missense_Mutation_p.R544T	NM_014454	NP_055269	Q9Y6P5	SESN1_HUMAN	sestrin 1	485					cell cycle arrest|negative regulation of cell proliferation|response to DNA damage stimulus	nucleus				ovary(1)	1		all_cancers(87;6.45e-05)|Acute lymphoblastic leukemia(125;3.55e-10)|all_hematologic(75;1.68e-07)|all_epithelial(87;0.0106)|Colorectal(196;0.0637)		Epithelial(106;0.0014)|BRCA - Breast invasive adenocarcinoma(108;0.00146)|all cancers(137;0.0031)|OV - Ovarian serous cystadenocarcinoma(136;0.0117)		GGTAATGGCTCTCAGAGCATA	0.398		NaN											0	0	0	0.00632	0	20	55				
COL10A1	1300	broad.mit.edu	37	6	116442382	116442382	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr6:116442382C>T	uc003pwm.2	-	3	993	c.897G>A	c.(895-897)GGG>GGA	p.G299G	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	299	Triple-helical region.				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		AGCCTGGTTTCCCAAAGCCAG	0.642		NaN											0	0	0	0.004482	0	8	27				
HDDC2	51020	broad.mit.edu	37	6	125621706	125621706	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr6:125621706C>T	uc003qaa.1	-	2	388	c.184G>A	c.(184-186)GAT>AAT	p.D62N	HDDC2_uc003qab.1_RNA	NM_016063	NP_057147	Q7Z4H3	HDDC2_HUMAN	HD domain containing 2	62	HD.						metal ion binding|phosphoric diester hydrolase activity				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0186)		AGACGGTCATCTTTGATCACC	0.498		NaN											0	0	0	0.028581	0	15	61				
FNDC1	84624	broad.mit.edu	37	6	159653433	159653433	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr6:159653433C>G	uc010kjv.2	+	11	2089	c.1889C>G	c.(1888-1890)TCT>TGT	p.S630C	FNDC1_uc010kjw.1_Missense_Mutation_p.S515C	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	630						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		CAGGGCACCTCTCATCGTCCT	0.667		NaN											0	0	0	0.006122	0	12	96				
WDR27	253769	broad.mit.edu	37	6	170013745	170013745	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr6:170013745G>A	uc003qwx.2	-	22	2751	c.2231C>T	c.(2230-2232)TCA>TTA	p.S744L	WDR27_uc003qwv.1_Intron|WDR27_uc010kkw.1_Missense_Mutation_p.S744L|WDR27_uc003qwy.2_Missense_Mutation_p.S617L			A2RRH5	WDR27_HUMAN	RecName: Full=WD repeat-containing protein 27;	714	WD 8.									pancreas(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.216)		OV - Ovarian serous cystadenocarcinoma(33;6.48e-20)|BRCA - Breast invasive adenocarcinoma(81;3.56e-07)|GBM - Glioblastoma multiforme(31;0.00168)		GGTTGTAAATGATGAACCCTA	0.423		NaN											0	0	0	0.014758	0	4	24				
AMZ1	155185	broad.mit.edu	37	7	2749415	2749415	+	Missense_Mutation	SNP	C	C	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr7:2749415C>A	uc003smr.1	+	6	1274	c.913C>A	c.(913-915)CAT>AAT	p.H305N	AMZ1_uc003sms.1_Missense_Mutation_p.A248E|AMZ1_uc011jwa.1_Missense_Mutation_p.H54N	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	305							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		GAAGCTGCAGCATGTCCTGGG	0.701		NaN									OREG0017838	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	1	0	2.4624e-09	0.008871	2.59031e-09	15	31				
PLEKHA8	84725	broad.mit.edu	37	7	30094402	30094402	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr7:30094402G>A	uc003tam.1	+	8	965	c.874G>A	c.(874-876)GAC>AAC	p.D292N	PLEKHA8_uc003tao.2_Missense_Mutation_p.D176N|PLEKHA8_uc003tap.1_Missense_Mutation_p.D292N|PLEKHA8_uc003tan.2_Missense_Mutation_p.D292N	NM_032639	NP_116028	Q96JA3	PKHA8_HUMAN	pleckstrin homology domain containing, family A	292					protein transport	cytoplasm	glycolipid binding|glycolipid transporter activity			breast(3)|ovary(1)	4						GTCTGGATCAGACTCAAGTTG	0.383		NaN											0	0	0	0.021523	0	22	79				
MYO1G	64005	broad.mit.edu	37	7	45015119	45015119	+	Silent	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr7:45015119C>T	uc003tmh.2	-	4	672	c.528G>A	c.(526-528)CCG>CCA	p.P176P	MYO1G_uc003tmg.2_5'Flank|MYO1G_uc010kym.2_Silent_p.P61P|MYO1G_uc003tmi.1_Silent_p.P88P|MYO1G_uc003tmj.2_5'UTR	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	176	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						GTCCTCCGATCGGGTCCCCCT	0.607		NaN											0	0	0	0.01892	0	16	28				
EPHB4	2050	broad.mit.edu	37	7	100417263	100417263	+	Missense_Mutation	SNP	C	C	G			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr7:100417263C>G	uc003uwn.1	-	6	1704	c.1213G>C	c.(1213-1215)GAG>CAG	p.E405Q	EPHB4_uc003uwm.1_Missense_Mutation_p.E312Q|EPHB4_uc010lhj.1_Missense_Mutation_p.E405Q|EPHB4_uc011kkf.1_Missense_Mutation_p.E405Q|EPHB4_uc011kkg.1_Intron|EPHB4_uc011kkh.1_Missense_Mutation_p.E405Q	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	405	Extracellular (Potential).|Fibronectin type-III 1.				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					GCAGTGACCTCAAAGGTATAG	0.622		NaN											0	0	0	0.024245	0	13	146				
RELN	5649	broad.mit.edu	37	7	103202301	103202301	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr7:103202301C>T	uc003vca.2	-	35	5470	c.5310G>A	c.(5308-5310)TGG>TGA	p.W1770*	RELN_uc010liz.2_Nonsense_Mutation_p.W1770*	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1770	EGF-like 4.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTGAGCACATCCAAGGGCACC	0.473		NaN											0	0	0	0.007835	0	30	48				
IFRD1	3475	broad.mit.edu	37	7	112096991	112096991	+	Missense_Mutation	SNP	C	C	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr7:112096991C>A	uc003vgh.2	+	5	750	c.307C>A	c.(307-309)CTT>ATT	p.L103I	IFRD1_uc011kmn.1_Missense_Mutation_p.L53I|IFRD1_uc003vgi.2_Missense_Mutation_p.L103I|IFRD1_uc003vgj.2_Missense_Mutation_p.L103I|IFRD1_uc011kmo.1_RNA|IFRD1_uc011kmp.1_Missense_Mutation_p.L53I	NM_001007245	NP_001007246	O00458	IFRD1_HUMAN	interferon-related developmental regulator 1	103					multicellular organismal development|myoblast cell fate determination		binding			kidney(1)|central_nervous_system(1)	2						GCAAGCAGCTCTTGAAGGTAT	0.338		NaN											1	0	0.00024832	0.009096	0.000257871	3	39				
FLNC	2318	broad.mit.edu	37	7	128488646	128488646	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr7:128488646G>C	uc003vnz.3	+	27	4821	c.4612G>C	c.(4612-4614)GAT>CAT	p.D1538H	FLNC_uc003voa.3_Missense_Mutation_p.D1538H	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1538	Filamin 14.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CCCAGCTCATGATGCCAGCAA	0.642		NaN											0	0	0	0.01441	0	54	254				
ZNF425	155054	broad.mit.edu	37	7	148801424	148801424	+	Silent	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr7:148801424G>A	uc003wfj.2	-	4	1612	c.1539C>T	c.(1537-1539)CTC>CTT	p.L513L		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	513	C2H2-type 11.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			GGTGCTGCGTGAGCCGCGACT	0.637		NaN											0	0	0	0.016723	0	9	33				
MLL3	58508	broad.mit.edu	37	7	151945127	151945127	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08			G	C	G	G		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr7:151945127G>C	uc003wla.2	-	14	2611	c.2392C>G	c.(2392-2394)CAT>GAT	p.H798D		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	798					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGGTAATTATGCAGCATGTCA	0.443		NaN	N		medulloblastoma								0	0	0	0.019004	0	25	552		Valid		
IKBKB	3551	broad.mit.edu	37	8	42183487	42183487	+	Splice_Site	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr8:42183487G>C	uc003xow.1	+	20	2164	c.1987_splice	c.e20-1	p.S663_splice	IKBKB_uc010lxj.1_Splice_Site_p.S440_splice|IKBKB_uc003xox.1_Splice_Site_p.S384_splice|IKBKB_uc011lcp.1_Splice_Site|IKBKB_uc011lcq.1_Splice_Site_p.S661_splice|IKBKB_uc010lxi.1_Splice_Site|IKBKB_uc011lcr.1_Splice_Site_p.S604_splice	NM_001556	NP_001547	O14920	IKKB_HUMAN	inhibitor of nuclear factor kappa B kinase beta						anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(3)|ovary(2)|lung(1)|skin(1)	7	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	TTGTCCCCTAGAGCAAGGTCC	0.522		NaN											0	0	0	0.01441	0	44	157				
LRRCC1	85444	broad.mit.edu	37	8	86050700	86050700	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr8:86050700G>C	uc003ycw.2	+	17	2984	c.2830G>C	c.(2830-2832)GAA>CAA	p.E944Q	LRRCC1_uc003ycx.2_Missense_Mutation_p.E851Q|LRRCC1_uc003ycy.2_Missense_Mutation_p.E924Q	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	944					cell division|mitosis	centriole|nucleus					0						CAAAAGTATTGAACTACAAAA	0.333		NaN											0	0	0	0.028581	0	13	20				
ESRP1	54845	broad.mit.edu	37	8	95655543	95655543	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr8:95655543G>A	uc003ygq.3	+	3	457	c.274G>A	c.(274-276)GTG>ATG	p.V92M	ESRP1_uc003ygr.3_Missense_Mutation_p.V92M|ESRP1_uc003ygs.3_Missense_Mutation_p.V92M|ESRP1_uc003ygt.3_Missense_Mutation_p.V92M|ESRP1_uc003ygu.3_Missense_Mutation_p.V92M|ESRP1_uc003ygv.2_5'Flank|ESRP1_uc003ygw.2_5'Flank	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	92					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						TAACCAGTCAGTGAGCAATGA	0.453		NaN											0	0	0	0.014758	0	4	87				
PLEKHF2	79666	broad.mit.edu	37	8	96166849	96166849	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr8:96166849C>T	uc003yhn.1	+	2	824	c.577C>T	c.(577-579)CTT>TTT	p.L193F		NM_024613	NP_078889	Q9H8W4	PKHF2_HUMAN	phafin 2	193	FYVE-type.					transport vesicle	metal ion binding|protein binding			ovary(2)	2	Breast(36;3.18e-05)					GAGATTTCTTCTTCCCAGCCA	0.507		NaN											0	0	0	0.01441	0	51	98				
RIMS2	9699	broad.mit.edu	37	8	104897909	104897909	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr8:104897909G>A	uc003yls.2	+	2	657	c.416G>A	c.(415-417)CGA>CAA	p.R139Q	RIMS2_uc003ylp.2_Missense_Mutation_p.R361Q|RIMS2_uc003ylw.2_Missense_Mutation_p.R169Q|RIMS2_uc003ylq.2_Missense_Mutation_p.R169Q|RIMS2_uc003ylr.2_Missense_Mutation_p.R169Q	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	392					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GAAGTGTCCCGAGCACGGCAT	0.478		NaN								HNSCC(12;0.0054)			0	0	0	0.024245	0	12	21				
CSMD3	114788	broad.mit.edu	37	8	113241090	113241090	+	Nonsense_Mutation	SNP	G	G	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr8:113241090G>T	uc003ynu.2	-	70	11018	c.10859C>A	c.(10858-10860)TCA>TAA	p.S3620*	CSMD3_uc003yns.2_Nonsense_Mutation_p.S2822*|CSMD3_uc003ynt.2_Nonsense_Mutation_p.S3580*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.S3451*	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3620	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGGTTGATTTGAAGAATTTGA	0.279		NaN								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			1	0	1.20859e-23	0.007413	1.32292e-23	15	18				
ENPP2	5168	broad.mit.edu	37	8	120620215	120620215	+	Silent	SNP	T	T	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr8:120620215T>C	uc003yot.1	-	9	866	c.780A>G	c.(778-780)CTA>CTG	p.L260L	ENPP2_uc003yos.1_Silent_p.L260L|ENPP2_uc010mdd.1_Silent_p.L260L	NM_001040092	NP_001035181	Q13822	ENPP2_HUMAN	autotaxin isoform 2 preproprotein	260					cellular component movement|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|phosphate metabolic process|phosphatidylcholine catabolic process|regulation of cell migration	extracellular space|integral to plasma membrane	alkylglycerophosphoethanolamine phosphodiesterase activity|calcium ion binding|lysophospholipase activity|nucleic acid binding|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)|kidney(1)	7	Lung NSC(37;5.03e-06)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			CTGTAATCCATAGCTAATGAG	0.318		NaN											0	0	0	0.006122	0	15	12				
MAPK15	225689	broad.mit.edu	37	8	144803789	144803789	+	Silent	SNP	G	G	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr8:144803789G>T	uc003yzj.2	+	12	1316	c.1275G>T	c.(1273-1275)GGG>GGT	p.G425G		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	425					protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CTCTCCTAGGGAATGGGGAAA	0.662		NaN											1	0	2.41358e-16	0.01441	2.59513e-16	60	64				
SLC1A1	6505	broad.mit.edu	37	9	4574009	4574009	+	Silent	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr9:4574009G>C	uc003zij.1	+	8	1106	c.870G>C	c.(868-870)CTG>CTC	p.L290L	C9orf68_uc003zik.2_Intron	NM_004170	NP_004161	P43005	EAA3_HUMAN	solute carrier family 1, member 1	290	Helical; (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0		Acute lymphoblastic leukemia(2;0.0359)|Breast(48;0.0457)		GBM - Glioblastoma multiforme(50;0.0124)|Lung(218;0.183)	L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)	CCACAGTCCTGACTGGGTATG	0.458		NaN											0	0	0	0.011902	0	44	47				
C9orf43	257169	broad.mit.edu	37	9	116190476	116190476	+	Missense_Mutation	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr9:116190476G>C	uc004bho.3	+	12	1476	c.1080G>C	c.(1078-1080)CAG>CAC	p.Q360H	C9orf43_uc004bhp.2_Missense_Mutation_p.Q360H	NM_152786	NP_689999	Q8TAL5	CI043_HUMAN	hypothetical protein LOC257169	360											0						AGCAGCAGCAGATGGAAAAAG	0.373		NaN											0	0	0	0.004672	0	3	127				
RBM10	8241	broad.mit.edu	37	X	47045491	47045491	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chrX:47045491G>A	uc004dhf.2	+	22	2837	c.2458G>A	c.(2458-2460)GAA>AAA	p.E820K	RBM10_uc004dhg.2_Missense_Mutation_p.E742K|RBM10_uc004dhh.2_Missense_Mutation_p.E819K|RBM10_uc010nhq.2_Missense_Mutation_p.E743K|RBM10_uc004dhi.2_Missense_Mutation_p.E885K	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	820					mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						CCGTGCAGCTGAACGCAGAGA	0.552		NaN											0	0	0	0.007413	0	16	17				
CACNA1F	778	broad.mit.edu	37	X	49071570	49071570	+	Silent	SNP	G	G	C			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chrX:49071570G>C	uc004dnb.2	-	29	3668	c.3606C>G	c.(3604-3606)CTC>CTG	p.L1202L	CACNA1F_uc010nip.2_Silent_p.L1191L	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1202	Helical; Name=S1 of repeat IV; (Potential).|IV.				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	CAACTGTGTTGAGCAGGATGA	0.552		NaN											0	0	0	0.027894	0	29	29				
STAG2	10735	broad.mit.edu	37	X	123185061	123185061	+	Missense_Mutation	SNP	C	C	T			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08			C	T	C	C		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chrX:123185061C>T	uc004etz.3	+	11	1447	c.1108C>T	c.(1108-1110)CGG>TGG	p.R370W	STAG2_uc004eua.2_Missense_Mutation_p.R370W|STAG2_uc004eub.2_Missense_Mutation_p.R370W|STAG2_uc004euc.2_Missense_Mutation_p.R370W|STAG2_uc004eud.2_Missense_Mutation_p.R370W|STAG2_uc004eue.2_Missense_Mutation_p.R370W	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	370	SCD.				cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						TTTTACCAGTCGGTTCAAGGT	0.294		NaN											0	0	0	0.014758	0	4	5		Valid		
TAZ	6901	broad.mit.edu	37	X	153640483	153640483	+	Missense_Mutation	SNP	G	G	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chrX:153640483G>A	uc004fkx.2	+	2	474	c.170G>A	c.(169-171)CGA>CAA	p.R57Q	DNASE1L1_uc004fks.1_5'Flank|DNASE1L1_uc004fkt.1_5'Flank|DNASE1L1_uc004fku.1_5'Flank|DNASE1L1_uc004fkv.1_5'Flank|DNASE1L1_uc004fkw.1_5'Flank|TAZ_uc004fky.2_Missense_Mutation_p.R57Q|TAZ_uc004fkz.2_RNA|TAZ_uc004fla.2_Missense_Mutation_p.R57Q|TAZ_uc004flb.2_Missense_Mutation_p.R57Q|TAZ_uc010nuy.2_Missense_Mutation_p.R75Q|TAZ_uc004flc.3_Intron	NM_000116	NP_000107	Q16635	TAZ_HUMAN	tafazzin isoform 1	57					cardiac muscle contraction|cardiac muscle tissue development|cardiolipin biosynthetic process|cristae formation|hemopoiesis|mitochondrial ATP synthesis coupled electron transport|mitochondrial respiratory chain complex I assembly|skeletal muscle tissue development	integral to membrane|mitochondrion	1-acylglycerophosphocholine O-acyltransferase activity				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					ATCGAGAAGCGAGGCCCGGCC	0.662		NaN									OREG0003602	type=REGULATORY REGION|Gene=DNASE1L1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	0	0	0	0.028581	0	14	6				
C11orf63	79864	broad.mit.edu	37	11	122775122	122775123	+	Frame_Shift_Ins	INS	-	-	A			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr11:122775122_122775123insA	uc001pym.2	+	3	1131_1132	c.834_835insA	c.(832-837)AATAAAfs	p.N278fs	C11orf63_uc001pyl.1_Frame_Shift_Ins_p.N278fs	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	278_279										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		AACTTCACAATAAAAAAAGAGG	0.406		NaN											NaN	NaN	NaN	NaN	NaN	86	153	---		---	---
SOX1	6656	broad.mit.edu	37	13	112722081	112722083	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr13:112722081_112722083delGGC	uc001vsb.1	+	1	169_171	c.109_111delGGC	c.(109-111)GGCdel	p.G43del		NM_005986	NP_005977	O00570	SOX1_HUMAN	SRY (sex determining region Y)-box 1	43	Poly-Gly.				chromatin organization	nucleus	core promoter sequence-specific DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	all_lung(23;0.000652)|Lung NSC(43;0.017)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	all_cancers(25;0.000331)|Lung NSC(25;0.0496)|all_lung(25;0.0831)|all_epithelial(44;0.0868)|Breast(118;0.231)		OV - Ovarian serous cystadenocarcinoma(48;0.132)		cggaggcgggggcggcggcggcg	0.552		NaN											NaN	NaN	NaN	NaN	NaN	5	10	---		---	---
UACA	55075	broad.mit.edu	37	15	70979935	70979935	+	Frame_Shift_Del	DEL	T	T	-	rs147378902		TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr15:70979935delT	uc002asr.2	-	7	650	c.546delA	c.(544-546)ATAfs	p.I182fs	UACA_uc010uke.1_Intron|UACA_uc002asq.2_Frame_Shift_Del_p.I169fs|UACA_uc010bin.1_Frame_Shift_Del_p.I168fs	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	182	ANK 5.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						GCAGTTGACATATTGTTGGCC	0.428		NaN											NaN	NaN	NaN	NaN	NaN	21	96	---		---	---
GGA3	23163	broad.mit.edu	37	17	73239175	73239175	+	Frame_Shift_Del	DEL	T	T	-			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr17:73239175delT	uc002jni.1	-	6	506	c.497delA	c.(496-498)AACfs	p.N166fs	GGA3_uc002jnj.1_Frame_Shift_Del_p.N133fs|GGA3_uc010wrw.1_Frame_Shift_Del_p.N44fs|GGA3_uc002jnk.1_Frame_Shift_Del_p.N94fs|GGA3_uc010wrx.1_Frame_Shift_Del_p.N44fs|GGA3_uc010wry.1_Frame_Shift_Del_p.N94fs|GGA3_uc010wrz.1_Intron	NM_138619	NP_619525	Q9NZ52	GGA3_HUMAN	ADP-ribosylation factor binding protein 3	166	Binds to ARF1 (in long isoform).				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|breast(1)	2			all cancers(21;2.39e-06)|Epithelial(20;2.38e-05)			AAAAACAGGGTTTTTGGGACG	0.542		NaN											NaN	NaN	NaN	NaN	NaN	7	303	---		---	---
HCN2	610	broad.mit.edu	37	19	616296	616296	+	Frame_Shift_Del	DEL	C	C	-			TCGA-FD-A3NA-01A-11D-A21A-08	TCGA-FD-A3NA-10A-01D-A21A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d079a32c-270b-4c43-8372-884e8d0c48ed	364bca7a-3890-45cb-a284-d681100ea5e0	g.chr19:616296delC	uc002lpe.2	+	8	2545	c.2492delC	c.(2491-2493)GCCfs	p.A831fs		NM_001194	NP_001185	Q9UL51	HCN2_HUMAN	hyperpolarization activated cyclic	831	Pro-rich.|Cytoplasmic (Potential).				cell-cell signaling|muscle contraction	voltage-gated potassium channel complex	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTCAcggcgcccccggcccc	0.413		NaN											NaN	NaN	NaN	NaN	NaN	2	4	---		---	---
