Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	isArtifactMode	oxoGCut	pox	pox_cutoff	qox	t_alt_count	t_ref_count	validation_alt_allele	validation_by_all_platform	validation_method	validation_tumor_sample
CLCN6	1185	broad.mit.edu	37	1	11867207	11867207	+	Missense_Mutation	SNP	A	A	G			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:11867207A>G	uc001ate.3	+	2	220	c.107A>G	c.(106-108)CAG>CGG	p.Q36R	MTHFR_uc001atc.1_5'Flank|MTHFR_uc001atd.1_5'Flank|MTHFR_uc009vnd.1_5'Flank|CLCN6_uc009vne.1_Missense_Mutation_p.Q36R|CLCN6_uc009vnf.1_Missense_Mutation_p.Q36R|CLCN6_uc009vng.1_Missense_Mutation_p.Q36R|CLCN6_uc009vnh.1_Missense_Mutation_p.Q36R|CLCN6_uc010oat.1_5'UTR|CLCN6_uc010oau.1_Missense_Mutation_p.Q36R	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	36	Cytoplasmic (By similarity).				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		GGAGAAACACAGGAGGAGGAG	0.473		NaN											0	0	0	0.010818	0	23	14				
ARID1A	8289	broad.mit.edu	37	1	27100375	27100375	+	Nonsense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08			C	T	C	C		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:27100375C>T	uc001bmv.1	+	17	4460	c.4087C>T	c.(4087-4089)CAA>TAA	p.Q1363*	ARID1A_uc001bmt.1_Nonsense_Mutation_p.Q1362*|ARID1A_uc001bmu.1_Nonsense_Mutation_p.Q1363*|ARID1A_uc001bmw.1_Nonsense_Mutation_p.Q980*|ARID1A_uc001bmx.1_Nonsense_Mutation_p.Q209*|ARID1A_uc009vsm.1_5'UTR|ARID1A_uc009vsn.1_5'Flank	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1363	Gln-rich.				androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		TACAATGTATCAACAGCAACA	0.488		NaN	Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								0	0	0	0.01441	0	121	96		Valid		
ROR1	4919	broad.mit.edu	37	1	64643579	64643579	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:64643579C>T	uc001dbj.2	+	9	2254	c.1855C>T	c.(1855-1857)CGC>TGC	p.R619C	uc001dbm.2_5'Flank	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	619	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						CCTTGCAGCTCGCAATATTTT	0.453		NaN											0	0	0	0.016723	0	13	28				
ST6GALNAC5	81849	broad.mit.edu	37	1	77510286	77510286	+	Missense_Mutation	SNP	C	C	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:77510286C>A	uc001dhi.2	+	3	834	c.659C>A	c.(658-660)ACT>AAT	p.T220N	ST6GALNAC5_uc010ori.1_Intron|ST6GALNAC5_uc009wbw.2_RNA	NM_030965	NP_112227	Q9BVH7	SIA7E_HUMAN	sialyltransferase 7E	220	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			pancreas(1)|skin(1)	2						AAGCAGGAGACTGGCAAAGAC	0.527		NaN											1	0	5.35356e-11	0.016522	5.80548e-11	20	216				
IFI44	10561	broad.mit.edu	37	1	79115948	79115948	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:79115948G>A	uc001dip.3	+	2	192	c.68G>A	c.(67-69)CGG>CAG	p.R23Q	IFI44_uc010orr.1_Missense_Mutation_p.R23Q|IFI44_uc010ors.1_Intron	NM_006417	NP_006408	Q8TCB0	IFI44_HUMAN	interferon-induced, hepatitis C-associated	23					response to virus	cytoplasm				ovary(1)|central_nervous_system(1)	2						GGAGGGAAGCGGCTTAGCCTT	0.403		NaN											0	0	0	0.012319	0	19	55				
DPYD	1806	broad.mit.edu	37	1	98187182	98187182	+	Missense_Mutation	SNP	C	C	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:98187182C>A	uc001drv.2	-	5	504	c.367G>T	c.(367-369)GGT>TGT	p.G123C	DPYD_uc010oub.1_RNA|DPYD_uc001drw.2_Missense_Mutation_p.G123C	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	123					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	CAAGTCAGACCAAGTGGGTTG	0.348		NaN											1	0	4.34086e-07	0.023175	4.58813e-07	32	51				
DENND4B	9909	broad.mit.edu	37	1	153915377	153915377	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:153915377G>A	uc001fdd.1	-	3	948	c.547C>T	c.(547-549)CCC>TCC	p.P183S		NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	183	MABP.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AGGTTGCGGGGCAGCCGGCAG	0.632		NaN											0	0	0	0.009096	0	3	43				
ELF3	1999	broad.mit.edu	37	1	201983142	201983142	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08			C	T	C	C		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:201983142C>T	uc001gxg.3	+	7	4183	c.991C>T	c.(991-993)CGG>TGG	p.R331W	ELF3_uc001gxi.3_Missense_Mutation_p.R331W|ELF3_uc001gxh.3_Missense_Mutation_p.R331W	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	331	ETS.				epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						GAAGCTGAGCCGGGCCATGAG	0.607		NaN											0	0	0	0.024245	0	13	9		Valid		
PRSS38	339501	broad.mit.edu	37	1	228005156	228005156	+	Silent	SNP	G	G	A	rs139000968	by1000genomes	TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:228005156G>A	uc001hrh.2	+	3	558	c.558G>A	c.(556-558)ACG>ACA	p.T186T		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	186	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						GCTGGGCTACGGGATGGGGAC	0.527		NaN											0	0	0	0.020292	0	12	74				
LYST	1130	broad.mit.edu	37	1	235922848	235922848	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:235922848C>T	uc001hxj.2	-	23	6480	c.6305G>A	c.(6304-6306)CGT>CAT	p.R2102H	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	2102					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GCTTCTAGAACGCAGCATATG	0.378		NaN							Chediak-Higashi_syndrome				0	0	0	0.00499	0	14	66				
OR2T12	127064	broad.mit.edu	37	1	248458734	248458735	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:248458734_248458735CC>AA	uc010pzj.1	-	1	146_147	c.146_147GG>TT	c.(145-147)TGG>TTT	p.W49F		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			GCCGGTGGTCCCAGTGAATCAG	0.535		NaN											0	0	0	0.004672	0	22	33				
C10orf2	56652	broad.mit.edu	37	10	102749592	102749592	+	Missense_Mutation	SNP	G	G	C			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr10:102749592G>C	uc001ksf.2	+	2	2110	c.1435G>C	c.(1435-1437)GAG>CAG	p.E479Q	MRPL43_uc001kry.1_5'Flank|MRPL43_uc010qpu.1_5'Flank|MRPL43_uc001krz.1_5'Flank|MRPL43_uc001ksa.1_5'Flank|MRPL43_uc001ksb.1_5'Flank|MRPL43_uc001ksd.1_5'Flank|MRPL43_uc001ksc.2_5'Flank|MRPL43_uc001kse.2_5'Flank|C10orf2_uc001ksg.2_Missense_Mutation_p.E479Q|C10orf2_uc001ksi.2_Missense_Mutation_p.E25Q|C10orf2_uc010qpv.1_Missense_Mutation_p.E25Q|C10orf2_uc001ksh.2_RNA	NM_021830	NP_068602	Q96RR1	PEO1_HUMAN	twinkle isoform A	479	SF4 helicase.		E -> K (in PEOA3).		cell death|mitochondrial DNA replication|protein hexamerization|protein homooligomerization|transcription from mitochondrial promoter	mitochondrial nucleoid	5'-3' DNA helicase activity|ATP binding|protease binding|single-stranded DNA binding			ovary(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)|BRCA - Breast invasive adenocarcinoma(275;0.224)		TGACCGCTTTGAGGACCTGCC	0.532		NaN											0	0	0	0.01441	0	45	144				
SFXN4	119559	broad.mit.edu	37	10	120925084	120925084	+	Nonsense_Mutation	SNP	C	C	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr10:120925084C>A	uc001leb.2	-	1	121	c.76G>T	c.(76-78)GAG>TAG	p.E26*	SFXN4_uc001ldz.2_5'Flank|SFXN4_uc001lea.2_RNA	NM_213649	NP_998814	Q6P4A7	SFXN4_HUMAN	sideroflexin 4	26					iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0261)		ACGTTGGGCTCAATGAAGGCG	0.433		NaN											1	0	4.3838e-07	0.016723	4.60437e-07	12	26				
CDHR5	53841	broad.mit.edu	37	11	617954	617954	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr11:617954C>T	uc001lqj.2	-	14	2223	c.2118G>A	c.(2116-2118)CCG>CCA	p.P706P	IRF7_uc009ycb.2_5'Flank|IRF7_uc010qwf.1_5'Flank|IRF7_uc001lqf.2_5'Flank|IRF7_uc010qwg.1_5'Flank|IRF7_uc001lqg.2_5'Flank|IRF7_uc001lqh.2_5'Flank|IRF7_uc001lqi.2_5'Flank|IRF7_uc010qwh.1_5'Flank|CDHR5_uc001lqk.2_Silent_p.P512P|CDHR5_uc009ycc.2_Silent_p.P540P|CDHR5_uc009ycd.2_Silent_p.P700P|CDHR5_uc001lql.2_Silent_p.P706P	NM_021924	NP_068743	Q9HBB8	CDHR5_HUMAN	mucin and cadherin-like isoform 1	706	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						TGGGCCTCACCGGAGCTTTGC	0.672		NaN											0	0	0	0.010729	0	9	12				
MRGPRE	116534	broad.mit.edu	37	11	3249921	3249921	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr11:3249921C>T	uc001lxq.3	-	2	416	c.106G>A	c.(106-108)GGT>AGT	p.G36S		NM_001039165	NP_001034254	Q86SM8	MRGRE_HUMAN	MAS-related GPR, member E	36	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(1)|ovary(1)	2		Medulloblastoma(188;0.00106)|all_epithelial(84;0.00111)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00529)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGCAGCCCACCGAGGCCGAGC	0.652		NaN											0	0	0	0.006214	0	9	76				
C11orf16	56673	broad.mit.edu	37	11	8947502	8947502	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr11:8947502G>A	uc001mhb.3	-	5	836	c.712C>T	c.(712-714)CAC>TAC	p.H238Y	C11orf16_uc001mhc.3_Missense_Mutation_p.H238Y	NM_020643	NP_065694	Q9NQ32	CK016_HUMAN	hypothetical protein LOC56673	238										upper_aerodigestive_tract(1)|pancreas(1)	2				Epithelial(150;4.11e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0234)		GGGGCCCAGTGAAGGGGCCTG	0.607		NaN											0	0	0	0.013537	0	10	88				
TIGD3	220359	broad.mit.edu	37	11	65123927	65123927	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr11:65123927C>T	uc001odo.3	+	2	811	c.648C>T	c.(646-648)CTC>CTT	p.L216L		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	216	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						TGGGTGGGCTCCAGGCTGCCC	0.637		NaN											0	0	0	0.00308	0	8	129				
SSH3	54961	broad.mit.edu	37	11	67077777	67077777	+	Silent	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr11:67077777G>A	uc001okj.2	+	13	1828	c.1650G>A	c.(1648-1650)CTG>CTA	p.L550L	SSH3_uc001okk.2_RNA|SSH3_uc001okl.2_Silent_p.L404L	NM_017857	NP_060327	Q8TE77	SSH3_HUMAN	slingshot homolog 3	550					regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton|nucleus	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			CCTTGGAGCTGGAGAGCACCT	0.622		NaN											0	0	0	0.028581	0	12	72				
PRCP	5547	broad.mit.edu	37	11	82611320	82611320	+	Missense_Mutation	SNP	G	G	C			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr11:82611320G>C	uc001ozs.2	-	1	238	c.125C>G	c.(124-126)CCG>CGG	p.P42R	PRCP_uc001ozr.2_Missense_Mutation_p.P42R|C11orf82_uc001ozt.2_5'Flank|C11orf82_uc010rsr.1_5'Flank|C11orf82_uc010rss.1_5'Flank|C11orf82_uc009yvd.2_5'Flank	NM_005040	NP_005031	P42785	PCP_HUMAN	prolylcarboxypeptidase isoform 1 preproprotein	42					blood coagulation, intrinsic pathway|proteolysis	lysosome|plasma membrane	protein binding|serine-type carboxypeptidase activity			skin(1)	1						GGCTACAGCCGGGAGGGATGT	0.637		NaN											0	0	0	0.028581	0	13	85				
KBTBD3	143879	broad.mit.edu	37	11	105929784	105929784	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr11:105929784C>T	uc001pja.2	-	3	681	c.41G>A	c.(40-42)CGA>CAA	p.R14Q	KBTBD3_uc001pjb.2_Missense_Mutation_p.R14Q|KBTBD3_uc009yxm.2_Intron	NM_198439	NP_940841	Q8NAB2	KBTB3_HUMAN	BTB and kelch domain containing 3	10										ovary(1)|central_nervous_system(1)	2		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.43e-05)|Epithelial(105;0.00418)|all cancers(92;0.0299)		ACATGTGCTTCGTTGATTGAA	0.328		NaN											0	0	0	0.014758	0	4	35				
CHEK1	1111	broad.mit.edu	37	11	125513987	125513987	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr11:125513987G>A	uc009zbo.2	+	10	1817	c.925G>A	c.(925-927)GAA>AAA	p.E309K	CHEK1_uc010sbh.1_Missense_Mutation_p.E325K|CHEK1_uc010sbi.1_Missense_Mutation_p.E309K|CHEK1_uc001qcf.3_Missense_Mutation_p.E309K|CHEK1_uc009zbp.2_Missense_Mutation_p.E309K|CHEK1_uc001qcg.3_Missense_Mutation_p.E309K|CHEK1_uc009zbq.2_Missense_Mutation_p.E309K|CHEK1_uc001qci.1_RNA|CHEK1_uc001qcj.2_5'UTR	NM_001114122	NP_001107594	O14757	CHK1_HUMAN	checkpoint kinase 1	309					cellular response to mechanical stimulus|DNA repair|DNA replication|gamete generation|negative regulation of cell proliferation|reciprocal meiotic recombination|regulation of cyclin-dependent protein kinase activity|replicative senescence	condensed nuclear chromosome|microtubule organizing center|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|skin(1)	6	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0748)		ATGCCTCAGTGAAGAAAATGT	0.378		NaN						Other_conserved_DNA_damage_response_genes					0	0	0	0.007835	0	38	26				
VWF	7450	broad.mit.edu	37	12	6105241	6105241	+	Missense_Mutation	SNP	G	G	C			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr12:6105241G>C	uc001qnn.1	-	35	6240	c.5990C>G	c.(5989-5991)GCA>GGA	p.A1997G	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1997	VWFD 4.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GCCCTGCCTTGCTCCAGGGCT	0.522		NaN											0	0	0	0.00499	0	14	24				
PRR4	11272	broad.mit.edu	37	12	11000981	11000981	+	Silent	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr12:11000981G>A	uc001qyz.3	-	2	129	c.90C>T	c.(88-90)TTC>TTT	p.F30F	PRR4_uc009zhp.2_Silent_p.F43F|PRH1_uc001qzb.3_RNA|PRR4_uc001qza.3_RNA|PRR4_uc009zhq.1_RNA	NM_007244	NP_009175	Q16378	PROL4_HUMAN	proline rich 4 (lacrimal) isoform 2	30					visual perception	extracellular space					0						CTGGTATGGTGAAAGTAAAGT	0.358		NaN											0	0	0	0.007413	0	15	15				
ATF7IP	55729	broad.mit.edu	37	12	14577646	14577646	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr12:14577646C>T	uc001rbw.2	+	2	955	c.797C>T	c.(796-798)TCT>TTT	p.S266F	ATF7IP_uc010shs.1_Missense_Mutation_p.S266F|ATF7IP_uc001rbu.2_Missense_Mutation_p.S266F|ATF7IP_uc001rbv.1_Missense_Mutation_p.S266F|ATF7IP_uc001rbx.2_Missense_Mutation_p.S266F|ATF7IP_uc010sht.1_Missense_Mutation_p.S266F|ATF7IP_uc001rby.3_Missense_Mutation_p.S266F|ATF7IP_uc001rbz.1_Missense_Mutation_p.S266F|ATF7IP_uc001rca.2_Missense_Mutation_p.S266F|ATF7IP_uc001rcb.2_5'Flank	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	266					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						GAACTGGCCTCTGATGATCTG	0.483		NaN											0	0	0	0.010818	0	29	86				
PRPF40B	25766	broad.mit.edu	37	12	50026812	50026812	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr12:50026812G>A	uc001rur.1	+	6	362	c.298G>A	c.(298-300)GAG>AAG	p.E100K	PRPF40B_uc001rup.1_Missense_Mutation_p.E122K|PRPF40B_uc001ruq.1_Missense_Mutation_p.E94K|PRPF40B_uc001rus.1_Missense_Mutation_p.E43K	NM_001031698	NP_001026868	Q6NWY9	PR40B_HUMAN	Huntingtin interacting protein C isoform 1	100	WW 1.				mRNA processing|RNA splicing	nuclear speck				skin(2)|ovary(1)|pancreas(1)|kidney(1)	5						CCTATGGAGTGAGCATGTGGC	0.582		NaN											0	0	0	0.014758	0	4	10				
KRT7	3855	broad.mit.edu	37	12	52627328	52627328	+	Missense_Mutation	SNP	C	C	G			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr12:52627328C>G	uc001saa.1	+	1	375	c.248C>G	c.(247-249)TCC>TGC	p.S83C	KRT7_uc009zmf.1_Missense_Mutation_p.S83C	NM_005556	NP_005547	P08729	K2C7_HUMAN	keratin 7	83	Head.			SL -> FS (in Ref. 3; CAB41416).	cytoskeleton organization|DNA replication|interphase|interspecies interaction between organisms|regulation of translation	Golgi apparatus|keratin filament|nucleus	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.105)		GCCGACCCCTCCCTCCAGCGG	0.677		NaN											0	0	0	0.00499	0	16	64				
NAV3	89795	broad.mit.edu	37	12	78360077	78360077	+	Silent	SNP	T	T	C			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr12:78360077T>C	uc001syp.2	+	4	656	c.483T>C	c.(481-483)GCT>GCC	p.A161A	NAV3_uc001syo.2_Silent_p.A161A	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	161	CH.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GTCTATCTGCTGAAGGTAAGA	0.338		NaN								HNSCC(70;0.22)			0	0	0	0.010504	0	18	22				
NTS	4922	broad.mit.edu	37	12	86272345	86272345	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr12:86272345G>A	uc001tag.2	+	3	465	c.358G>A	c.(358-360)GAG>AAG	p.E120K		NM_006183	NP_006174	P30990	NEUT_HUMAN	neurotensin/neuromedin N preproprotein	120					regulation of blood vessel size|signal transduction	extracellular region|soluble fraction|transport vesicle	neuropeptide hormone activity				0						TCAACACTGGGAGGTATAGCA	0.333		NaN											0	0	0	0.00308	0	6	41				
GPR109A	338442	broad.mit.edu	37	12	123186957	123186957	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr12:123186957C>T	uc001ucx.1	-	1	948	c.874G>A	c.(874-876)GTG>ATG	p.V292M	GPR81_uc001ucw.1_Intron	NM_177551	NP_808219	Q8TDS4	HCAR2_HUMAN	G protein-coupled receptor 109A	292	Helical; Name=7; (Potential).				negative regulation of lipid catabolic process|neutrophil apoptosis|positive regulation of adiponectin secretion|positive regulation of neutrophil apoptosis	integral to membrane|plasma membrane	nicotinic acid receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	TAGTACACCACGGGGTCCAGC	0.527		NaN											0	0	0	0.021553	0	4	44				
KL	9365	broad.mit.edu	37	13	33635874	33635874	+	Silent	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr13:33635874G>A	uc001uus.2	+	4	2666	c.2658G>A	c.(2656-2658)CTG>CTA	p.L886L	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	886	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		ACGACCAGCTGAGGGTGTATT	0.488		NaN											0	0	0	0.007413	0	18	67				
POU4F1	5457	broad.mit.edu	37	13	79175873	79175873	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr13:79175873C>T	uc001vkv.2	-	2	1171	c.937G>A	c.(937-939)GAG>AAG	p.E313K	uc001vku.1_Intron	NM_006237	NP_006228	Q01851	PO4F1_HUMAN	POU domain, class 4, transcription factor 1	313	POU-specific.				axonogenesis|regulation of transcription from RNA polymerase II promoter|synapse assembly	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.129)		GTGAGCGACTCGAACCTGCAG	0.647		NaN											0	0	0	0.008291	0	6	18				
TPP2	7174	broad.mit.edu	37	13	103326724	103326724	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr13:103326724G>A	uc001vpi.3	+	27	3527	c.3424G>A	c.(3424-3426)GAC>AAC	p.D1142N		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	1142					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CCAGGCTCAAGACGGAGCCAT	0.478		NaN											0	0	0	0.027356	0	24	39				
SLC7A7	9056	broad.mit.edu	37	14	23249162	23249162	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr14:23249162C>T	uc001wgr.3	-	3	736	c.598G>A	c.(598-600)GTT>ATT	p.V200I	SLC7A7_uc001wgs.3_Missense_Mutation_p.V200I|SLC7A7_uc001wgt.3_Missense_Mutation_p.V200I|SLC7A7_uc001wgu.3_Missense_Mutation_p.V200I|SLC7A7_uc001wgv.3_Missense_Mutation_p.V200I	NM_003982	NP_003973	Q9UM01	YLAT1_HUMAN	solute carrier family 7 member 7	200	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity			ovary(1)|breast(1)	2	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.00741)		ATGCCTGCAACGATGACCGCG	0.299		NaN											0	0	0	0.016522	0	18	53				
MYH6	4624	broad.mit.edu	37	14	23866174	23866174	+	Missense_Mutation	SNP	C	C	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr14:23866174C>A	uc001wjv.2	-	18	2233	c.2166G>T	c.(2164-2166)CAG>CAT	p.Q722H		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	722	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		ATACCCACCTCTGCCGGAAGT	0.627		NaN											1	0	8.88839e-20	0.010818	9.76554e-20	22	60				
DDX24	57062	broad.mit.edu	37	14	94527268	94527268	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr14:94527268C>T	uc001ycj.2	-	4	1487	c.1388G>A	c.(1387-1389)CGG>CAG	p.R463Q	DDX24_uc010twq.1_Missense_Mutation_p.R420Q|DDX24_uc010twr.1_Missense_Mutation_p.R213Q	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	463	Helicase ATP-binding.				RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		CCTGAGCTGCCGAAGGTTCCT	0.488		NaN											0	0	0	0.004482	0	7	34				
CLMN	79789	broad.mit.edu	37	14	95688091	95688091	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr14:95688091C>T	uc001yef.2	-	4	377	c.261G>A	c.(259-261)TCG>TCA	p.S87S		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	87	Actin-binding.|CH 1.					integral to membrane	actin binding				0				Epithelial(152;0.193)		TACGATGCGACGAGGATTTGT	0.443		NaN											0	0	0	0.006214	0	8	43				
PAPOLA	10914	broad.mit.edu	37	14	97003321	97003321	+	Missense_Mutation	SNP	A	A	G			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr14:97003321A>G	uc001yfq.2	+	12	1249	c.1039A>G	c.(1039-1041)ATC>GTC	p.I347V	PAPOLA_uc001yfr.2_Missense_Mutation_p.I347V|PAPOLA_uc010twv.1_Missense_Mutation_p.I347V|PAPOLA_uc010avp.2_Missense_Mutation_p.I97V	NM_032632	NP_116021	P51003	PAPOA_HUMAN	poly(A) polymerase alpha	347					mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|RNA binding				0		all_cancers(154;0.0555)|all_epithelial(191;0.149)|Melanoma(154;0.155)		COAD - Colon adenocarcinoma(157;0.213)		AGGTCTTGCTATCACAGATGA	0.308		NaN											0	0	0	0.016723	0	10	24				
HSP90AA1	3320	broad.mit.edu	37	14	102549453	102549453	+	Missense_Mutation	SNP	T	T	C			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr14:102549453T>C	uc001yku.3	-	9	1863	c.1673A>G	c.(1672-1674)AAA>AGA	p.K558R	HSP90AA1_uc001ykv.3_Missense_Mutation_p.K680R|HSP90AA1_uc001ykw.1_Missense_Mutation_p.K379R|HSP90AA1_uc001ykx.1_Missense_Mutation_p.K547R	NM_005348	NP_005339	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 2	558					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	ctgcttctttttctcttcttc	0.224		NaN											0	0	0	0.004482	0	9	15				
ATP10A	57194	broad.mit.edu	37	15	25947187	25947187	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr15:25947187C>T	uc010ayu.2	-	13	2742	c.2636G>A	c.(2635-2637)CGT>CAT	p.R879H		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	879	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		GCCCGCTTGACGCAATTTAGA	0.527		NaN											0	0	0	0.016522	0	22	76				
SLC12A1	6557	broad.mit.edu	37	15	48541868	48541868	+	Missense_Mutation	SNP	C	C	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr15:48541868C>A	uc001zwn.3	+	14	1997	c.1781C>A	c.(1780-1782)TCT>TAT	p.S594Y	SLC12A1_uc010uew.1_Missense_Mutation_p.S400Y|SLC12A1_uc010bem.2_Missense_Mutation_p.S594Y|SLC12A1_uc001zwq.3_Missense_Mutation_p.S365Y|SLC12A1_uc001zwr.3_Missense_Mutation_p.S321Y	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	594	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	TATGCCAAATCTCCAGGTAAG	0.388		NaN											1	0	1.08611e-07	0.010729	1.16269e-07	10	48				
CGNL1	84952	broad.mit.edu	37	15	57730261	57730261	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr15:57730261G>A	uc002aeg.2	+	2	140	c.64G>A	c.(64-66)GCA>ACA	p.A22T	CGNL1_uc010bfw.2_Missense_Mutation_p.A22T	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	22	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		TCTGAGACTCGCAAGTGATGA	0.493		NaN											0	0	0	0.01441	0	70	179				
DPP8	54878	broad.mit.edu	37	15	65756226	65756226	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr15:65756226G>A	uc002aov.2	-	15	3470	c.1892C>T	c.(1891-1893)ACT>ATT	p.T631I	DPP8_uc002aow.2_Missense_Mutation_p.T631I|DPP8_uc010uiv.1_RNA|DPP8_uc002aox.2_Missense_Mutation_p.T615I|DPP8_uc002aoy.2_Missense_Mutation_p.T631I|DPP8_uc002aoz.2_Missense_Mutation_p.T615I|DPP8_uc010bhj.2_Missense_Mutation_p.T631I|DPP8_uc002apa.2_Missense_Mutation_p.T528I|DPP8_uc010bhi.2_5'UTR|DPP8_uc010bhk.1_Missense_Mutation_p.T200I	NM_130434	NP_569118	Q6V1X1	DPP8_HUMAN	dipeptidyl peptidase 8 isoform 1	631					immune response|proteolysis	cytoplasm|membrane|nucleus	aminopeptidase activity|dipeptidyl-peptidase activity|serine-type peptidase activity			ovary(1)	1						TTCTGGAGGAGTATAGTCAGG	0.378		NaN											0	0	0	0.007413	0	17	26				
PTPN9	5780	broad.mit.edu	37	15	75762295	75762295	+	Missense_Mutation	SNP	G	G	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr15:75762295G>T	uc002bal.2	-	12	1913	c.1405C>A	c.(1405-1407)CCA>ACA	p.P469T		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	469	Tyrosine-protein phosphatase.					cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						CCATAGTCTGGCCAGCTCAAG	0.507		NaN											1	0	5.01169e-05	0.00499	5.16638e-05	15	48				
IREB2	3658	broad.mit.edu	37	15	78790398	78790398	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr15:78790398C>T	uc002bdr.2	+	22	2967	c.2805C>T	c.(2803-2805)AGC>AGT	p.S935S	IREB2_uc010unb.1_Silent_p.S685S	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	935							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		AAGTATTCAGCGTGATTGCTT	0.363		NaN											0	0	0	0.014758	0	5	53				
ADAMTS7	11173	broad.mit.edu	37	15	79060507	79060507	+	Missense_Mutation	SNP	C	C	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr15:79060507C>A	uc002bej.3	-	17	2824	c.2613G>T	c.(2611-2613)CAG>CAT	p.Q871H	ADAMTS7_uc010und.1_Missense_Mutation_p.Q447H	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	871	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						TGCACTTCCTCTGTTGGTCAT	0.453		NaN											1	0	5.18039e-06	0.00308	5.37345e-06	7	18				
CCDC78	124093	broad.mit.edu	37	16	775266	775266	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr16:775266C>T	uc002cjg.2	-	5	569	c.463G>A	c.(463-465)GAG>AAG	p.E155K	CCDC78_uc002cjf.2_Missense_Mutation_p.E4K|CCDC78_uc002cji.3_Missense_Mutation_p.E229K|CCDC78_uc002cjj.3_Missense_Mutation_p.E99K|CCDC78_uc002cjh.2_5'UTR|CCDC78_uc010uuo.1_Missense_Mutation_p.E155K|CCDC78_uc002cjk.2_Missense_Mutation_p.E144K|HAGHL_uc002cjl.1_5'Flank|HAGHL_uc002cjm.1_5'Flank|HAGHL_uc002cjn.1_5'Flank|HAGHL_uc002cjo.1_5'Flank|HAGHL_uc010uup.1_5'Flank	NM_001031737	NP_001026907	A2IDD5	CCD78_HUMAN	coiled-coil domain containing 78	155										central_nervous_system(1)	1		Hepatocellular(780;0.0218)				TGCTCATTCTCGGGGTTCATG	0.627		NaN											0	0	0	0.010818	0	22	108				
SRRM2	23524	broad.mit.edu	37	16	2818182	2818182	+	Silent	SNP	G	G	C	rs149616150	byFrequency	TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr16:2818182G>C	uc002crk.2	+	11	8202	c.7653G>C	c.(7651-7653)TCG>TCC	p.S2551S	SRRM2_uc002crj.1_Silent_p.S2455S|SRRM2_uc002crl.1_Silent_p.S2551S|SRRM2_uc010bsu.1_Silent_p.S2455S	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	2551	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						cgtcgtcgtcgtcctcctcct	0.368		NaN											0	0	0	0.013537	0	11	10				
CREBBP	1387	broad.mit.edu	37	16	3779153	3779153	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr16:3779153C>T	uc002cvv.2	-	31	6099	c.5895G>A	c.(5893-5895)GAG>GAA	p.E1965E	CREBBP_uc002cvw.2_Silent_p.E1927E	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	1965					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GCTGCTGGGCCTCACGCTCGA	0.711		NaN	T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				0	0	0	0.004672	0	3	6				
ABR	29	broad.mit.edu	37	17	1028677	1028677	+	Silent	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr17:1028677G>A	uc002fsd.2	-	2	197	c.87C>T	c.(85-87)TAC>TAT	p.Y29Y	ABR_uc002fse.2_Translation_Start_Site|ABR_uc010cjq.1_Silent_p.Y41Y	NM_021962	NP_068781	Q12979	ABR_HUMAN	active breakpoint cluster region-related	29					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		CCTCTCCGTCGTACTCGTCCG	0.592		NaN											0	0	0	0.01441	0	44	142				
CYTSB	92521	broad.mit.edu	37	17	20108086	20108086	+	Missense_Mutation	SNP	G	G	A	rs144644210		TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr17:20108086G>A	uc002gwq.2	+	4	869	c.724G>A	c.(724-726)GAT>AAT	p.D242N	CYTSB_uc010cqx.2_Missense_Mutation_p.D242N|CYTSB_uc002gwr.2_Missense_Mutation_p.D242N|CYTSB_uc002gws.2_Missense_Mutation_p.D242N|CYTSB_uc002gwv.2_Missense_Mutation_p.D161N|CYTSB_uc010vzf.1_Intron|CYTSB_uc002gww.2_Missense_Mutation_p.D18N|CYTSB_uc002gwt.2_Missense_Mutation_p.D161N|CYTSB_uc002gwu.2_Missense_Mutation_p.D161N	NM_001033553	NP_001028725	Q5M775	CYTSB_HUMAN	spectrin domain with coiled-coils 1 NSP5b3b	242						nucleus					0						AGAGCTTTCCGATCTAGAGGA	0.498		NaN											0	0	0	0.008361	0	28	110				
NBR1	4077	broad.mit.edu	37	17	41343528	41343528	+	Missense_Mutation	SNP	A	A	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr17:41343528A>T	uc010czd.2	+	10	1143	c.1003A>T	c.(1003-1005)ATC>TTC	p.I335F	NBR1_uc010diz.2_Missense_Mutation_p.I335F|NBR1_uc010whu.1_Missense_Mutation_p.I335F|NBR1_uc010whv.1_Missense_Mutation_p.I335F|NBR1_uc010whw.1_Missense_Mutation_p.I314F|NBR1_uc010whx.1_Missense_Mutation_p.I144F	NM_031862	NP_114068	Q14596	NBR1_HUMAN	neighbor of BRCA1 gene 1	335					macroautophagy|protein oligomerization	autophagic vacuole|cytoplasmic vesicle|cytosol|late endosome|lysosome|sarcomere	ubiquitin binding|zinc ion binding			skin(1)	1		Breast(137;0.00086)		BRCA - Breast invasive adenocarcinoma(366;0.0934)		GTGGAATTCAATCCATGGACT	0.478		NaN											0	0	0	0.009096	0	3	11				
CACNA1G	8913	broad.mit.edu	37	17	48649340	48649340	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr17:48649340G>A	uc002irk.1	+	5	1060	c.688G>A	c.(688-690)GTC>ATC	p.V230I	CACNA1G_uc002iri.1_Missense_Mutation_p.V230I|CACNA1G_uc002irj.1_Missense_Mutation_p.V230I|CACNA1G_uc002irl.1_Missense_Mutation_p.V230I|CACNA1G_uc002irm.1_Missense_Mutation_p.V230I|CACNA1G_uc002irn.1_Missense_Mutation_p.V230I|CACNA1G_uc002iro.1_Missense_Mutation_p.V230I|CACNA1G_uc002irp.1_Missense_Mutation_p.V230I|CACNA1G_uc002irq.1_Missense_Mutation_p.V230I|CACNA1G_uc002irr.1_Missense_Mutation_p.V230I|CACNA1G_uc002irs.1_Missense_Mutation_p.V230I|CACNA1G_uc002irt.1_Missense_Mutation_p.V230I|CACNA1G_uc002irv.1_Missense_Mutation_p.V230I|CACNA1G_uc002irw.1_Missense_Mutation_p.V230I|CACNA1G_uc002iru.1_Missense_Mutation_p.V230I|CACNA1G_uc002irx.1_Missense_Mutation_p.V143I|CACNA1G_uc002iry.1_Missense_Mutation_p.V143I|CACNA1G_uc002irz.1_Missense_Mutation_p.V143I|CACNA1G_uc002isa.1_Missense_Mutation_p.V143I|CACNA1G_uc002isb.1_Missense_Mutation_p.V143I|CACNA1G_uc002isc.1_Missense_Mutation_p.V143I|CACNA1G_uc002isd.1_Missense_Mutation_p.V143I|CACNA1G_uc002ise.1_Missense_Mutation_p.V143I|CACNA1G_uc002isf.1_Missense_Mutation_p.V143I|CACNA1G_uc002isg.1_Missense_Mutation_p.V143I|CACNA1G_uc002ish.1_Missense_Mutation_p.V143I|CACNA1G_uc002isi.1_Missense_Mutation_p.V143I	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	230	I.|Helical; Name=S5 of repeat I; (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CATCGTCGGCGTCCAGCTGTG	0.587		NaN											0	0	0	0.016723	0	14	32				
KCNJ2	3759	broad.mit.edu	37	17	68172154	68172154	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr17:68172154G>A	uc010dfg.2	+	2	1375	c.974G>A	c.(973-975)CGC>CAC	p.R325H	KCNJ2_uc002jir.2_Missense_Mutation_p.R325H	NM_000891	NP_000882	P63252	IRK2_HUMAN	potassium inwardly-rectifying channel J2	325	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity|protein binding				0	Breast(10;1.64e-08)					TGGGGCCACCGCTATGAGCCT	0.493		NaN											0	0	0	0.013537	0	12	57				
ESCO1	114799	broad.mit.edu	37	18	19112474	19112474	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr18:19112474G>A	uc002kth.1	-	11	3269	c.2335C>T	c.(2335-2337)CGT>TGT	p.R779C	ESCO1_uc002kti.1_RNA	NM_052911	NP_443143	Q5FWF5	ESCO1_HUMAN	establishment of cohesion 1 homolog 1	779					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding				0						TTCTTCCGACGCATCATGCTG	0.408		NaN											0	0	0	0.008291	0	9	103				
ESCO1	114799	broad.mit.edu	37	18	19154691	19154691	+	Silent	SNP	T	T	C			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr18:19154691T>C	uc002kth.1	-	4	1048	c.114A>G	c.(112-114)AAA>AAG	p.K38K	ESCO1_uc002kti.1_RNA	NM_052911	NP_443143	Q5FWF5	ESCO1_HUMAN	establishment of cohesion 1 homolog 1	38					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding				0						TTGGACCTGATTTTTTTGCTA	0.338		NaN											0	0	0	0.019004	0	36	29				
DCC	1630	broad.mit.edu	37	18	50731606	50731606	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr18:50731606G>A	uc002lfe.1	+	10	2181	c.1594G>A	c.(1594-1596)GAA>AAA	p.E532K	DCC_uc010xdr.1_Missense_Mutation_p.E380K|DCC_uc010dpf.1_Missense_Mutation_p.E187K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	532	Extracellular (Potential).|Fibronectin type-III 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGGGCCAGTAGAAAACCTGCA	0.388		NaN											0	0	0	0.01441	0	47	163				
FSTL3	10272	broad.mit.edu	37	19	681360	681360	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr19:681360G>A	uc002lpk.1	+	4	568	c.533G>A	c.(532-534)CGG>CAG	p.R178Q	FSTL3_uc010drt.1_RNA	NM_005860	NP_005851	O95633	FSTL3_HUMAN	follistatin-like 3 glycoprotein precursor	178	Follistatin-like 2.				hemopoietic progenitor cell differentiation|negative regulation of activin receptor signaling pathway|negative regulation of BMP signaling pathway|negative regulation of osteoclast differentiation|ossification|positive regulation of cell-cell adhesion|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	extracellular space|nucleus	activin binding|fibronectin binding				0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGTGCCCGCGGCCACAGTCG	0.701		NaN	T	CCND1	B-CLL								0	0	0	0.006214	0	6	11				
ZNF414	84330	broad.mit.edu	37	19	8576365	8576365	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr19:8576365C>T	uc002mkf.2	-	6	1048	c.930G>A	c.(928-930)GCG>GCA	p.A310A	ZNF414_uc002mke.3_Intron|ZNF414_uc010dwf.2_Silent_p.A299A	NM_032370	NP_115746	Q96IQ9	ZN414_HUMAN	zinc finger protein 414 isoform 2	310					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTCACCTGCACGCACCTGAGG	0.687		NaN											0	0	0	0.013537	0	10	21				
ADAMTS10	81794	broad.mit.edu	37	19	8665902	8665902	+	Silent	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr19:8665902G>A	uc002mkj.1	-	6	994	c.720C>T	c.(718-720)TAC>TAT	p.Y240Y	ADAMTS10_uc002mkk.1_Translation_Start_Site	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	240	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GGGTCTCCACGTAGCGCTCTC	0.622		NaN											0	0	0	0.021022	0	35	104				
MUC16	94025	broad.mit.edu	37	19	8996396	8996396	+	Missense_Mutation	SNP	C	C	G			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr19:8996396C>G	uc002mkp.2	-	61	41380	c.41176G>C	c.(41176-41178)GAG>CAG	p.E13726Q	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.E543Q|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13728	Extracellular (Potential).|SEA 11.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGCTCAGCTCCCAATACAGC	0.567		NaN											0	0	0	0.01441	0	54	108				
ZNF844	284391	broad.mit.edu	37	19	12187307	12187307	+	Missense_Mutation	SNP	G	G	C			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr19:12187307G>C	uc002mtb.2	+	4	1515	c.1372G>C	c.(1372-1374)GAT>CAT	p.D458H	ZNF844_uc010dym.1_Missense_Mutation_p.D301H	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	458					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCCTTCAGATCTGCCTCA	0.423		NaN											0	0	0	0.009096	0	4	105				
CD97	976	broad.mit.edu	37	19	14512345	14512345	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr19:14512345C>T	uc002myl.2	+	10	1168	c.1045C>T	c.(1045-1047)CCC>TCC	p.P349S	CD97_uc002mym.2_Missense_Mutation_p.P300S|CD97_uc002myn.2_Missense_Mutation_p.P256S	NM_078481	NP_510966	P48960	CD97_HUMAN	CD97 antigen isoform 1 precursor	349	Extracellular (Potential).				cell adhesion|cell-cell signaling|cellular component movement|immune response|inflammatory response|neuropeptide signaling pathway	extracellular space|integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(3)|breast(1)	4						GCCTAAAGGCCCCTTCACCTA	0.612		NaN											0	0	0	0.013537	0	11	71				
ZNF529	57711	broad.mit.edu	37	19	37038913	37038913	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr19:37038913C>T	uc002oeh.3	-	5	749	c.547G>A	c.(547-549)GAC>AAC	p.D183N	ZNF529_uc010xth.1_Missense_Mutation_p.D183N|ZNF529_uc010xti.1_Missense_Mutation_p.D165N|ZNF529_uc002oeg.3_Missense_Mutation_p.D78N	NM_020951	NP_066002	Q6P280	ZN529_HUMAN	zinc finger protein 529 isoform a	150					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	Esophageal squamous(110;0.198)					AACTCTAAGTCACAACTGAAG	0.363		NaN											0	0	0	0.014323	0	23	24				
CYP2A6	1548	broad.mit.edu	37	19	41354273	41354273	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr19:41354273C>T	uc002opl.3	-	4	526	c.505G>A	c.(505-507)GAT>AAT	p.D169N	CYP2A6_uc010ehe.1_5'UTR|CYP2A6_uc010ehf.1_RNA	NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	169					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	AAGGTGGGATCGATATTGGCG	0.542		NaN											0	0	0	0.00632	0	17	95				
CEACAM4	1089	broad.mit.edu	37	19	42131981	42131981	+	Missense_Mutation	SNP	C	C	T	rs118076769	byFrequency	TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr19:42131981C>T	uc002orh.1	-	2	529	c.418G>A	c.(418-420)GTA>ATA	p.V140I	CEACAM4_uc010xwd.1_Missense_Mutation_p.V140I	NM_001817	NP_001808	O75871	CEAM4_HUMAN	carcinoembryonic antigen-related cell adhesion	140	Extracellular (Potential).					integral to plasma membrane|membrane fraction					0						TCACGGTGTACGTGGAGCTGG	0.562		NaN											0	0	0	0.01441	0	39	199				
ZNF534	147658	broad.mit.edu	37	19	52954586	52954586	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr19:52954586G>A	uc002pzj.1	+	5	543	c.418G>A	c.(418-420)GTT>ATT	p.V140I	ZNF534_uc010epo.1_Missense_Mutation_p.V97I|ZNF578_uc002pzm.2_5'Flank|ZNF578_uc002pzn.2_5'Flank|ZNF578_uc002pzp.3_5'Flank|ZNF578_uc002pzo.1_5'Flank|ZNF578_uc010epp.1_5'Flank			Q76KX8	ZN534_HUMAN	SubName: Full=Putative uncharacterized protein;	Error:Variant_position_missing_in_Q76KX8_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATTTCCTTCCGTTTCTGCTTC	0.682		NaN											0	0	0	0.014758	0	4	8				
TPO	7173	broad.mit.edu	37	2	1497623	1497623	+	Silent	SNP	C	C	T	rs148782927	by1000genomes	TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr2:1497623C>T	uc002qww.2	+	11	1909	c.1818C>T	c.(1816-1818)CCC>CCT	p.P606P	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Silent_p.P549P|TPO_uc002qwr.2_Silent_p.P606P|TPO_uc002qwx.2_Silent_p.P549P|TPO_uc010yio.1_Silent_p.P433P|TPO_uc010yip.1_Silent_p.P606P|TPO_uc002qwy.1_5'UTR|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	606	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	TGGAGACCCCCGCTGACCTGA	0.577		NaN											0	0	0	0.010729	0	11	17				
DEFB126	81623	broad.mit.edu	37	20	126332	126332	+	Silent	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr20:126332G>A	uc002wcx.2	+	2	353	c.335G>A	c.(334-336)TGA>TAA	p.*112*		NM_030931	NP_112193	Q9BYW3	DB126_HUMAN	defensin, beta 126 preproprotein	112					defense response to bacterium	extracellular region					0		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.122)			CCCACTGGTTGAACATTCCAG	0.408		NaN											0	0	0	0.011902	0	33	178				
RALGAPB	57148	broad.mit.edu	37	20	37117126	37117126	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr20:37117126C>T	uc002xiw.2	+	2	308	c.51C>T	c.(49-51)GGC>GGT	p.G17G	RALGAPB_uc010zvz.1_Silent_p.G17G|RALGAPB_uc002xix.2_Silent_p.G17G|RALGAPB_uc002xiy.1_Silent_p.G17G	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	17					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						ATGATCAAGGCCATACCAGTG	0.493		NaN											0	0	0	0.019004	0	31	154				
TOMM34	10953	broad.mit.edu	37	20	43572202	43572202	+	Silent	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr20:43572202G>A	uc002xmy.2	-	6	857	c.717C>T	c.(715-717)GTC>GTT	p.V239V	PABPC1L_uc002xmx.2_Intron|TOMM34_uc002xmz.2_RNA	NM_006809	NP_006800	Q15785	TOM34_HUMAN	translocase of outer mitochondrial membrane 34	239	TPR 5.				protein targeting to mitochondrion	integral to membrane|mitochondrial outer membrane	heat shock protein binding|signal sequence binding				0		Myeloproliferative disorder(115;0.0122)				ACTGCTTCAGGACCAAATAGC	0.493		NaN											0	0	0	0.008871	0	17	84				
SFRS15	57466	broad.mit.edu	37	21	33065763	33065763	+	Missense_Mutation	SNP	T	T	C			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr21:33065763T>C	uc002ypd.2	-	12	1783	c.1357A>G	c.(1357-1359)AGA>GGA	p.R453G	SFRS15_uc002ype.2_Missense_Mutation_p.R453G|SFRS15_uc010glu.2_Missense_Mutation_p.R438G|SFRS15_uc002ypf.1_Missense_Mutation_p.R127G	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	453						nucleus	nucleotide binding|RNA binding				0						CTTCGAGATCTAGAACCAGAT	0.453		NaN											0	0	0	0.013726	0	25	11				
MN1	4330	broad.mit.edu	37	22	28193514	28193514	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr22:28193514C>T	uc003adj.2	-	1	3973	c.3018G>A	c.(3016-3018)ACG>ACA	p.T1006T		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	1006							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						AGGATGGCGACGTGAGCGCCT	0.701		NaN	T	ETV6	AML|meningioma								0	0	0	0.00632	0	24	64				
MAPK11	5600	broad.mit.edu	37	22	50705688	50705688	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr22:50705688G>A	uc003bkr.2	-	5	503	c.445C>T	c.(445-447)CGG>TGG	p.R149W	MAPK11_uc010hax.2_5'UTR|MAPK11_uc011ars.1_RNA|MAPK11_uc010hay.1_RNA|MAPK11_uc011art.1_Missense_Mutation_p.P129L|MAPK11_uc010haz.2_Missense_Mutation_p.R41W	NM_002751	NP_002742	Q15759	MK11_HUMAN	mitogen-activated protein kinase 11	149	Protein kinase.				activation of MAPK activity|innate immune response|mRNA metabolic process|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of muscle cell differentiation|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|protein binding			lung(1)|breast(1)	2		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GCACCTACCCGGTGGATGATC	0.587		NaN											0	0	0	0.001984	0	4	22				
SLC6A1	6529	broad.mit.edu	37	3	11058951	11058951	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:11058951C>T	uc010hdq.2	+	3	465	c.54C>T	c.(52-54)AGC>AGT	p.S18S		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	18	Cytoplasmic (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	CCGAGGTCAGCGAGGCCCCTG	0.637		NaN											0	0	0	0.013537	0	12	65				
NUP210	23225	broad.mit.edu	37	3	13376966	13376966	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:13376966C>T	uc003bxv.1	-	28	3914	c.3831G>A	c.(3829-3831)GAG>GAA	p.E1277E		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1277	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GGACTTGGATCTCATCCGAGA	0.627		NaN											0	0	0	0.017118	0	25	184				
NUP210	23225	broad.mit.edu	37	3	13376980	13376980	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:13376980C>T	uc003bxv.1	-	28	3900	c.3817G>A	c.(3817-3819)GAA>AAA	p.E1273K		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1273	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TCCGAGAGTTCTCTGGCCAGG	0.632		NaN											0	0	0	0.024334	0	15	164				
NUP210	23225	broad.mit.edu	37	3	13377022	13377022	+	Missense_Mutation	SNP	C	C	T	rs146409293		TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:13377022C>T	uc003bxv.1	-	28	3858	c.3775G>A	c.(3775-3777)GCT>ACT	p.A1259T		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1259	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GGGTCCACAGCCTTGACCACC	0.617		NaN											0	0	0	0.013537	0	9	110				
NUP210	23225	broad.mit.edu	37	3	13377029	13377029	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:13377029C>T	uc003bxv.1	-	28	3851	c.3768G>A	c.(3766-3768)GTG>GTA	p.V1256V		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1256	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					CAGCCTTGACCACCACCCTCA	0.602		NaN											0	0	0	0.008291	0	8	112				
NUP210	23225	broad.mit.edu	37	3	13377074	13377074	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:13377074C>T	uc003bxv.1	-	28	3806	c.3723G>A	c.(3721-3723)ATG>ATA	p.M1241I		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1241	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					CGAGCACGTTCATGGCAAAGT	0.602		NaN											0	0	0	0.010729	0	9	99				
PTPRG	5793	broad.mit.edu	37	3	61989042	61989042	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:61989042C>T	uc003dlb.2	+	4	1109	c.390C>T	c.(388-390)GAC>GAT	p.D130D	PTPRG_uc003dlc.2_Silent_p.D130D	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	130	Extracellular (Potential).|Alpha-carbonic anhydrase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		TTCTGAAAGACGACTATTTTG	0.438		NaN											0	0	0	0.007291	0	22	72				
FAM19A1	407738	broad.mit.edu	37	3	68466476	68466476	+	Silent	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:68466476G>A	uc003dnd.2	+	3	381	c.165G>A	c.(163-165)AAG>AAA	p.K55K	FAM19A1_uc003dne.2_Silent_p.K55K|FAM19A1_uc003dng.2_Silent_p.K55K	NM_213609	NP_998774	Q7Z5A9	F19A1_HUMAN	family with sequence similarity 19 (chemokine	55						endoplasmic reticulum|extracellular region				ovary(1)	1		Lung NSC(201;0.0117)		BRCA - Breast invasive adenocarcinoma(55;7.7e-05)|Epithelial(33;0.000937)|KIRC - Kidney renal clear cell carcinoma(39;0.0579)|Kidney(39;0.0743)		GTTGTAACAAGAATCGCATTG	0.468		NaN											0	0	0	0.00632	0	27	41				
MORC1	27136	broad.mit.edu	37	3	108682322	108682322	+	Missense_Mutation	SNP	G	G	C			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:108682322G>C	uc003dxl.2	-	27	2825	c.2738C>G	c.(2737-2739)TCT>TGT	p.S913C	MORC1_uc011bhn.1_Missense_Mutation_p.S892C	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	913	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CTTATCCTCAGAGATTTTTCT	0.294		NaN											0	0	0	0.01441	0	38	55				
C3orf15	89876	broad.mit.edu	37	3	119445049	119445049	+	Silent	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:119445049G>A	uc003ede.3	+	7	791	c.714G>A	c.(712-714)GTG>GTA	p.V238V	C3orf15_uc010hqy.1_Silent_p.V238V|C3orf15_uc010hqz.2_Silent_p.V176V|C3orf15_uc011bjd.1_Silent_p.V112V|C3orf15_uc011bje.1_Silent_p.V218V|C3orf15_uc010hra.1_5'UTR	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	238						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		AAGCTGAGGTGGAGATGATAG	0.532		NaN											0	0	0	0.024245	0	14	28				
ZIC1	7545	broad.mit.edu	37	3	147127954	147127954	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:147127954G>A	uc003ewe.2	+	1	774	c.55G>A	c.(55-57)GCG>ACG	p.A19T		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	19					behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.A19A(1)		ovary(1)|central_nervous_system(1)	2						CACCTTTGGCGCGTCCCGCCA	0.741		NaN											0	0	0	0.020292	0	12	37				
ARPM1	84517	broad.mit.edu	37	3	169485270	169485270	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:169485270C>T	uc003ffs.1	-	2	1444	c.1069G>A	c.(1069-1071)GCA>ACA	p.A357T	TERC_uc003ffr.1_5'Flank	NM_032487	NP_115876	Q9BYD9	ARPM1_HUMAN	actin related protein M1	357						cytoplasm|cytoskeleton					0	all_cancers(22;9.55e-22)|all_epithelial(15;2.04e-26)|all_lung(20;5.05e-16)|Lung NSC(18;2.19e-15)|Ovarian(172;0.000223)|Breast(254;0.197)		Epithelial(2;4.03e-64)|all cancers(2;5.01e-59)|Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			TTAAATTCTGCAGCAGTGATC	0.398		NaN											0	0	0	0.00499	0	14	195				
TP63	8626	broad.mit.edu	37	3	189455639	189455639	+	Missense_Mutation	SNP	T	T	C			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:189455639T>C	uc003fry.2	+	2	262	c.173T>C	c.(172-174)ATC>ACC	p.I58T	TP63_uc003frx.2_Missense_Mutation_p.I58T|TP63_uc003frz.2_Missense_Mutation_p.I58T|TP63_uc010hzc.1_Missense_Mutation_p.I58T	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	58	Transcription activation.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TTCCAGCATATCTGGGATTTT	0.403		NaN							Hay-Wells_syndrome	HNSCC(45;0.13)			0	0	0	0.028581	0	14	51				
CRMP1	1400	broad.mit.edu	37	4	5837699	5837699	+	Silent	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr4:5837699G>A	uc003gip.2	-	12	1325	c.1224C>T	c.(1222-1224)GAC>GAT	p.D408D	CRMP1_uc003gin.1_Silent_p.D320D|CRMP1_uc003giq.2_Silent_p.D408D|CRMP1_uc003gir.2_Silent_p.D403D|CRMP1_uc003gis.2_Silent_p.D522D	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	408					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		AGATGACCACGTCGGCATCCG	0.517		NaN											0	0	0	0.015359	0	33	84				
LGI2	55203	broad.mit.edu	37	4	25005321	25005321	+	Missense_Mutation	SNP	C	C	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr4:25005321C>A	uc003grf.2	-	8	1489	c.1390G>T	c.(1390-1392)GCC>TCC	p.A464S		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	464	EAR 6.					extracellular region					0		Breast(46;0.173)				AGGGTCATGGCCCCCCGGGAT	0.512		NaN											1	0	3.00307e-07	0.008361	3.19434e-07	27	146				
TBC1D1	23216	broad.mit.edu	37	4	38016441	38016441	+	Silent	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr4:38016441G>A	uc003gtb.2	+	3	1072	c.729G>A	c.(727-729)TCG>TCA	p.S243S	TBC1D1_uc011byd.1_Silent_p.S243S|TBC1D1_uc010ifd.2_Intron|TBC1D1_uc011byf.1_Silent_p.S114S	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	243						nucleus	Rab GTPase activator activity			ovary(1)	1						GCCTGCGCTCGCTGGCCTTTA	0.672		NaN											0	0	0	0.001984	0	7	7				
FRYL	285527	broad.mit.edu	37	4	48549697	48549697	+	Nonsense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr4:48549697G>A	uc003gyh.1	-	41	5583	c.4978C>T	c.(4978-4980)CGA>TGA	p.R1660*	FRYL_uc003gyg.1_Nonsense_Mutation_p.R356*|FRYL_uc003gyi.1_Nonsense_Mutation_p.R549*|FRYL_uc003gyj.1_5'Flank	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	1660					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						GCAACAGTTCGGATGTTACTA	0.418		NaN											0	0	0	0.013537	0	12	37				
PDGFRA	5156	broad.mit.edu	37	4	55140704	55140704	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr4:55140704G>A	uc003han.3	+	11	1896	c.1565G>A	c.(1564-1566)CGT>CAT	p.R522H	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.R416H|PDGFRA_uc003ham.2_RNA|PDGFRA_uc003hao.1_5'Flank	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	522	Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GTAGCCCTGCGTTCTGAACTC	0.498		NaN	Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			0	0	0	0.009535	0	27	83				
SORBS2	8470	broad.mit.edu	37	4	186545479	186545479	+	Silent	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr4:186545479G>A	uc003iyl.2	-	13	1950	c.1092C>T	c.(1090-1092)AAC>AAT	p.N364N	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Silent_p.N464N|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Silent_p.N268N|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Silent_p.N478N|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	364						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		AGATTTCTGCGTTTTGCCGGG	0.517		NaN											0	0	0	0.009096	0	3	55				
SLC9A3	6550	broad.mit.edu	37	5	482184	482184	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr5:482184C>T	uc003jbe.2	-	8	1557	c.1445G>A	c.(1444-1446)CGC>CAC	p.R482H	SLC9A3_uc011clx.1_Missense_Mutation_p.R473H	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	482	Cytoplasmic (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			CGCACTTACGCGCCCGTGCAG	0.692		NaN											0	0	0	0.014758	0	3	25				
SLC9A3	6550	broad.mit.edu	37	5	484634	484634	+	Splice_Site	SNP	C	C	T	rs144524702		TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr5:484634C>T	uc003jbe.2	-	5	1044	c.932_splice	c.e5+1	p.A311_splice	SLC9A3_uc011clx.1_Splice_Site_p.A311_splice	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen							cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			GAGGGACTCACGCGAGGATGG	0.642		NaN											0	0	0	0.010504	0	17	31				
SLC6A18	348932	broad.mit.edu	37	5	1232401	1232401	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr5:1232401C>T	uc003jby.1	+	2	351	c.228C>T	c.(226-228)CTC>CTT	p.L76L		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	76	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			ACGTCGAGCTCGCCATCGGCC	0.667		NaN											0	0	0	0.014758	0	3	38				
MAP3K1	4214	broad.mit.edu	37	5	56177590	56177590	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr5:56177590C>T	uc003jqw.3	+	14	3064	c.2563C>T	c.(2563-2565)CGT>TGT	p.R855C		NM_005921	NP_005912	Q13233	M3K1_HUMAN	mitogen-activated protein kinase kinase kinase	855					cellular response to mechanical stimulus|innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		GATGCGTCGCCGTTTGATGGC	0.478		NaN											0	0	0	0.010729	0	8	80				
MEGF10	84466	broad.mit.edu	37	5	126781188	126781188	+	Missense_Mutation	SNP	G	G	T	rs138372925		TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr5:126781188G>T	uc003kuh.3	+	21	2893	c.2531G>T	c.(2530-2532)CGA>CTA	p.R844L	MEGF10_uc003kui.3_Missense_Mutation_p.R844L	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	844	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		AGCTTAAGCCGAACCAGTACT	0.438		NaN											1	0	1.51926e-22	0.01441	1.68024e-22	39	45				
KDM3B	51780	broad.mit.edu	37	5	137761242	137761242	+	Missense_Mutation	SNP	A	A	G			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr5:137761242A>G	uc003lcy.1	+	17	4582	c.4382A>G	c.(4381-4383)GAT>GGT	p.D1461G	KDM3B_uc010jew.1_Missense_Mutation_p.D1117G|KDM3B_uc011cys.1_Missense_Mutation_p.D493G	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	1461					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						AAAGTTCGGGATTTCTGGGAT	0.453		NaN											0	0	0	0.01441	0	51	43				
PCDHGA2	56113	broad.mit.edu	37	5	140719540	140719540	+	Silent	SNP	C	C	T	rs149528645		TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr5:140719540C>T	uc003ljk.1	+	1	1187	c.1002C>T	c.(1000-1002)ATC>ATT	p.I334I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.I334I	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	334	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGAAGGTTATCGTCACGGTTC	0.428		NaN											0	0	0	0.013114	0	41	135				
PCDHGB1	56104	broad.mit.edu	37	5	140730581	140730581	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr5:140730581G>A	uc003ljo.1	+	1	754	c.754G>A	c.(754-756)GTA>ATA	p.V252I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.V252I	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	252	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAAGAAAACGTACCGTGGGG	0.522		NaN											0	0	0	0.007413	0	17	66				
PCDHGA8	9708	broad.mit.edu	37	5	140774130	140774130	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr5:140774130C>T	uc003lkd.1	+	1	2648	c.1750C>T	c.(1750-1752)CGT>TGT	p.R584C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.R584C	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	584	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCGCAGAGCGTGGCTACCT	0.672		NaN											0	0	0	0.01441	0	47	146				
KIAA0319	9856	broad.mit.edu	37	6	24596319	24596319	+	Missense_Mutation	SNP	A	A	G			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:24596319A>G	uc011djo.1	-	3	820	c.583T>C	c.(583-585)TTC>CTC	p.F195L	KIAA0319_uc011djp.1_Missense_Mutation_p.F150L|KIAA0319_uc003neh.1_Missense_Mutation_p.F195L|KIAA0319_uc011djq.1_Missense_Mutation_p.F186L|KIAA0319_uc011djr.1_Missense_Mutation_p.F195L	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	195	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GAGGAGTTGAAGGCCCCCTCG	0.632		NaN											0	0	0	0.006122	0	13	23				
HIST1H1E	3008	broad.mit.edu	37	6	26156830	26156830	+	Missense_Mutation	SNP	A	A	G			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:26156830A>G	uc003ngq.2	+	1	272	c.212A>G	c.(211-213)TAT>TGT	p.Y71C	HIST1H2BD_uc003ngr.2_5'Flank|HIST1H2BD_uc003ngs.2_5'Flank	NM_005321	NP_005312	P10412	H14_HUMAN	histone cluster 1, H1e	71	H15.				nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			large_intestine(1)|ovary(1)	2						GCCGCTGGCTATGACGTGGAG	0.627		NaN											0	0	0	0.006122	0	15	30				
MUC21	394263	broad.mit.edu	37	6	30954151	30954151	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:30954151G>A	uc003nsh.2	+	2	450	c.199G>A	c.(199-201)GTG>ATG	p.V67M	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	67	Ser-rich.|3.|28 X 15 AA approximate tandem repeats.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						AGGGTCCAGCGTGACCTCCAA	0.572		NaN											0	0	0	0.01441	0	68	180				
RNF5	6048	broad.mit.edu	37	6	32146400	32146400	+	Missense_Mutation	SNP	G	G	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:32146400G>T	uc003oaj.3	+	1	239	c.112G>T	c.(112-114)GTG>TTG	p.V38L	AGPAT1_uc003oae.2_5'Flank|AGPAT1_uc011dpk.1_5'Flank|AGPAT1_uc003oaf.2_5'Flank|AGPAT1_uc003oag.2_5'Flank|AGPAT1_uc003oah.2_5'Flank|AGPAT1_uc003oai.1_5'Flank|AGPAT1_uc011dpl.1_5'Flank	NM_006913	NP_008844	Q99942	RNF5_HUMAN	ring finger protein 5	38	RING-type.				ER-associated misfolded protein catabolic process|protein K48-linked ubiquitination|protein K63-linked ubiquitination	endoplasmic reticulum membrane|integral to membrane|mitochondrial membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						TCGGGAAGCTGTGGTCAGTGT	0.612		NaN											1	0	1.57019e-19	0.007835	1.71387e-19	29	97				
B3GALT4	8705	broad.mit.edu	37	6	33245984	33245984	+	Nonsense_Mutation	SNP	C	C	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:33245984C>A	uc003odr.2	+	1	1068	c.788C>A	c.(787-789)TCA>TAA	p.S263*		NM_003782	NP_003773	O96024	B3GT4_HUMAN	UDP-Gal:betaGlcNAc beta	263	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	ganglioside galactosyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)|breast(1)	2						CCCTATGCCTCAGGCACGGGG	0.637		NaN											1	0	2.47511e-08	0.008361	2.66673e-08	30	39				
LEMD2	221496	broad.mit.edu	37	6	33740447	33740447	+	Missense_Mutation	SNP	C	C	G			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:33740447C>G	uc011drm.1	-	9	1483	c.1470G>C	c.(1468-1470)TGG>TGC	p.W490C	LEMD2_uc010jvg.2_Missense_Mutation_p.W199C|LEMD2_uc011drl.1_Missense_Mutation_p.W188C|LEMD2_uc003ofe.2_Missense_Mutation_p.W188C	NM_181336	NP_851853	Q8NC56	LEMD2_HUMAN	LEM domain containing 2 isoform 1	490						integral to nuclear inner membrane				central_nervous_system(1)	1						TAGTCCATCTCCACACCAGCA	0.622		NaN											0	0	0	0.027894	0	35	37				
FAM135A	57579	broad.mit.edu	37	6	71234834	71234834	+	Nonsense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:71234834C>T	uc003pfj.2	+	13	2180	c.2047C>T	c.(2047-2049)CGA>TGA	p.R683*	FAM135A_uc003pfi.2_Nonsense_Mutation_p.R487*|FAM135A_uc003pfh.2_Nonsense_Mutation_p.R470*|FAM135A_uc003pfl.2_Nonsense_Mutation_p.R350*|FAM135A_uc003pfn.2_Nonsense_Mutation_p.R113*|FAM135A_uc003pfo.1_Nonsense_Mutation_p.R54*	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	683										central_nervous_system(1)	1						GACAGAGCTTCGACAAGAGGA	0.353		NaN											0	0	0	0.023175	0	34	42				
LAMA2	3908	broad.mit.edu	37	6	129380937	129380937	+	Missense_Mutation	SNP	C	C	T	rs140199131		TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:129380937C>T	uc003qbn.2	+	3	397	c.292C>T	c.(292-294)CCG>TCG	p.P98S	LAMA2_uc003qbo.2_Missense_Mutation_p.P98S	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	98	Laminin N-terminal.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AGAGAGACACCCGATTACAAA	0.328		NaN											0	0	0	0.004482	0	9	44				
ALDH8A1	64577	broad.mit.edu	37	6	135263702	135263702	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:135263702C>T	uc003qew.2	-	3	340	c.287G>A	c.(286-288)GGG>GAG	p.G96E	ALDH8A1_uc003qex.2_Missense_Mutation_p.G96E|ALDH8A1_uc010kgh.2_5'UTR|ALDH8A1_uc011ecx.1_Missense_Mutation_p.G96E	NM_022568	NP_072090	Q9H2A2	AL8A1_HUMAN	aldehyde dehydrogenase 8A1 isoform 1	96					retinal metabolic process	cytoplasm	retinal dehydrogenase activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00401)|GBM - Glioblastoma multiforme(68;0.0058)		TAAGGTTTTCCCTGTAAGAAG	0.522		NaN											0	0	0	0.007413	0	18	573				
PLEKHG1	57480	broad.mit.edu	37	6	151055093	151055093	+	Silent	SNP	A	A	G			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:151055093A>G	uc003qny.1	+	3	588	c.276A>G	c.(274-276)AGA>AGG	p.R92R	PLEKHG1_uc011eel.1_Silent_p.R132R|PLEKHG1_uc011eem.1_Silent_p.R151R|PLEKHG1_uc003qnz.2_Silent_p.R92R	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	92					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		CGCAGTGGAGAGTGGACTCAA	0.602		NaN											0	0	0	0.001984	0	5	31				
SERAC1	84947	broad.mit.edu	37	6	158564168	158564168	+	Nonsense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:158564168G>A	uc003qrc.2	-	8	800	c.658C>T	c.(658-660)CAA>TAA	p.Q220*	SERAC1_uc003qrb.2_5'UTR	NM_032861	NP_116250	Q96JX3	SRAC1_HUMAN	serine active site containing 1	220					GPI anchor metabolic process|intracellular protein transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	binding|hydrolase activity, acting on ester bonds				0		Breast(66;0.00519)|Ovarian(120;0.123)|Prostate(117;0.178)		OV - Ovarian serous cystadenocarcinoma(65;1.37e-18)|BRCA - Breast invasive adenocarcinoma(81;3.19e-05)		AGCTCTGTTTGAGGTAAGGAA	0.373		NaN											0	0	0	0.015359	0	27	52				
PARK2	5071	broad.mit.edu	37	6	162864342	162864342	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:162864342C>T	uc003qtx.3	-	2	305	c.171G>A	c.(169-171)CAG>CAA	p.Q57Q	PARK2_uc010kkd.2_5'UTR|PARK2_uc003qtw.3_5'UTR|PARK2_uc003qty.3_Silent_p.Q57Q|PARK2_uc003qtz.3_Silent_p.Q57Q|PARK2_uc010kke.1_Silent_p.Q57Q	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	57	Ubiquitin-like.				aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		GGAGACTCACCTGCACAGTCC	0.567		NaN											0	0	0	0.028581	0	15	53				
FZD9	8326	broad.mit.edu	37	7	72850005	72850005	+	Silent	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr7:72850005C>T	uc003tyb.2	+	1	1897	c.1668C>T	c.(1666-1668)CGC>CGT	p.R556R		NM_003508	NP_003499	O00144	FZD9_HUMAN	frizzled 9 precursor	556	Cytoplasmic (Potential).				B cell differentiation|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|neuroblast proliferation|vasculature development	cell surface|filopodium membrane|integral to membrane|perinuclear region of cytoplasm	G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				AGGCCTGCCGCGCCCCCGGGA	0.652		NaN											0	0	0	0.00308	0	7	51				
CYP3A7	1551	broad.mit.edu	37	7	99314836	99314836	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr7:99314836C>T	uc003uru.2	-	6	590	c.485G>A	c.(484-486)CGG>CAG	p.R162Q	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	162					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding	p.R162R(1)		ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					CTCTGCTTCCCGCCTCAGATT	0.502		NaN											0	0	0	0.025465	0	26	104				
MUC17	140453	broad.mit.edu	37	7	100686998	100686998	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr7:100686998C>T	uc003uxp.1	+	3	12354	c.12301C>T	c.(12301-12303)CGG>TGG	p.R4101W	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4101	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACCCAGCACACGGACCACTTC	0.562		NaN											0	0	0	0.007291	0	28	102				
AASS	10157	broad.mit.edu	37	7	121741434	121741434	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr7:121741434C>T	uc003vka.2	-	12	1493	c.1397G>A	c.(1396-1398)CGG>CAG	p.R466Q	AASS_uc011knu.1_RNA|AASS_uc011knv.1_RNA|AASS_uc003vkb.2_Missense_Mutation_p.R466Q|AASS_uc011knw.1_5'UTR	NM_005763	NP_005754	Q9UDR5	AASS_HUMAN	aminoadipate-semialdehyde synthase precursor	466					protein tetramerization	mitochondrial matrix	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity|saccharopine dehydrogenase (NADP+, L-lysine-forming) activity			upper_aerodigestive_tract(1)|ovary(1)	2					L-Glutamic Acid(DB00142)|NADH(DB00157)	CCTGCTCTCCCGGAGTGTCTG	0.318		NaN											0	0	0	0.014323	0	17	59				
ZNF786	136051	broad.mit.edu	37	7	148768943	148768943	+	Silent	SNP	T	T	C			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr7:148768943T>C	uc003wfh.2	-	4	1058	c.921A>G	c.(919-921)CCA>CCG	p.P307P	ZNF786_uc011kuk.1_Silent_p.P270P|ZNF786_uc003wfi.2_Silent_p.P221P	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	307					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			TGCTGTCCACTGGGAGGGAGC	0.697		NaN											0	0	0	0.006122	0	15	22				
DLC1	10395	broad.mit.edu	37	8	12957624	12957624	+	Missense_Mutation	SNP	C	C	G			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr8:12957624C>G	uc003wwm.2	-	9	2666	c.2222G>C	c.(2221-2223)AGC>ACC	p.S741T	DLC1_uc003wwk.1_Missense_Mutation_p.S304T|DLC1_uc003wwl.1_Missense_Mutation_p.S338T|DLC1_uc011kxx.1_Missense_Mutation_p.S230T	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	741	Poly-Ser.				actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						GCTGCTGCTGCTGGTCTGCGT	0.627		NaN											0	0	0	0.009096	0	3	90				
MTMR7	9108	broad.mit.edu	37	8	17157445	17157445	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr8:17157445C>T	uc003wxm.2	-	14	2148	c.1909G>A	c.(1909-1911)GGT>AGT	p.G637S	MTMR7_uc011kya.1_Missense_Mutation_p.G271S|MTMR7_uc011kyb.1_Missense_Mutation_p.G228S	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	637							protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		TGCTCACCACCACTTGGAGAC	0.498		NaN											0	0	0	0.01441	0	70	66				
FZD3	7976	broad.mit.edu	37	8	28385479	28385479	+	Missense_Mutation	SNP	G	G	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr8:28385479G>T	uc003xgx.2	+	5	1680	c.1202G>T	c.(1201-1203)CGA>CTA	p.R401L	FZD3_uc010lvb.2_Missense_Mutation_p.R401L	NM_017412	NP_059108	Q9NPG1	FZD3_HUMAN	frizzled 3 precursor	401	Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell proliferation in midbrain|commissural neuron axon guidance|establishment of planar polarity|facial nucleus development|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|inner ear morphogenesis|neural tube closure|vasculature development	apical part of cell|axon|cytoplasm|dendrite|integral to membrane|neuron projection membrane|neuronal cell body|presynaptic active zone	G-protein coupled receptor activity|PDZ domain binding|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.109)|Kidney(114;0.13)|Colorectal(74;0.23)		AACAGAGTTCGAATTGAGATT	0.403		NaN											1	0	1.17611e-34	0.01441	1.3094e-34	82	83				
FUT10	84750	broad.mit.edu	37	8	33247281	33247281	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr8:33247281G>A	uc003xje.2	-	4	768	c.412C>T	c.(412-414)CGG>TGG	p.R138W	FUT10_uc003xjc.2_Missense_Mutation_p.R145W|FUT10_uc003xjd.2_Missense_Mutation_p.R110W|FUT10_uc011lbi.1_Missense_Mutation_p.R188W|FUT10_uc003xjf.2_Missense_Mutation_p.R76W|FUT10_uc003xjg.2_Missense_Mutation_p.R110W|FUT10_uc003xjh.2_Missense_Mutation_p.R138W	NM_032664	NP_116053	Q6P4F1	FUT10_HUMAN	fucosyltransferase 10	138	Lumenal (Potential).				embryo development|fertilization|hemopoiesis|L-fucose catabolic process|nervous system development|protein folding|protein glycosylation|protein targeting|wound healing	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			ovary(1)|pancreas(1)	2				KIRC - Kidney renal clear cell carcinoma(67;0.129)|Kidney(114;0.154)		TGGGCTTTCCGAGGCAGAGGT	0.388		NaN											0	0	0	0.007835	0	37	71				
PXDNL	137902	broad.mit.edu	37	8	52384861	52384861	+	Missense_Mutation	SNP	C	C	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr8:52384861C>A	uc003xqu.3	-	8	799	c.698G>T	c.(697-699)AGC>ATC	p.S233I		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	233	LRRCT.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AATTCGGGGGCTCTCTGCAAC	0.408		NaN											1	0	8.34094e-07	0.008871	8.70585e-07	17	133				
VPS13B	157680	broad.mit.edu	37	8	100865842	100865842	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr8:100865842G>A	uc003yiv.2	+	56	10411	c.10300G>A	c.(10300-10302)GAG>AAG	p.E3434K	VPS13B_uc003yiw.2_Missense_Mutation_p.E3409K	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3434					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CCCTGGGGAAGAGCCTGTGGC	0.527		NaN											0	0	0	0.01441	0	45	58				
PKHD1L1	93035	broad.mit.edu	37	8	110498987	110498987	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr8:110498987G>A	uc003yne.2	+	59	9921	c.9817G>A	c.(9817-9819)GAG>AAG	p.E3273K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3273	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CGGTTGGTCTGAGGACTCTTT	0.423		NaN								HNSCC(38;0.096)			0	0	0	0.01441	0	59	336				
CSMD3	114788	broad.mit.edu	37	8	113694839	113694839	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr8:113694839G>A	uc003ynu.2	-	16	2668	c.2509C>T	c.(2509-2511)CCT>TCT	p.P837S	CSMD3_uc003yns.2_Missense_Mutation_p.P109S|CSMD3_uc003ynt.2_Missense_Mutation_p.P797S|CSMD3_uc011lhx.1_Missense_Mutation_p.P733S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	837	Sushi 4.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GGTATTCCAGGATCAGGGCAT	0.358		NaN								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			0	0	0	0.007413	0	15	164				
C8orf85	441376	broad.mit.edu	37	8	117950663	117950663	+	Nonsense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr8:117950663C>T	uc003yof.2	+	1	200	c.181C>T	c.(181-183)CGA>TGA	p.R61*		NM_001025357	NP_001020528	Q4LEZ3	AARD_HUMAN	alanine and arginine-rich domain-containing	61	Ala/Arg-rich.										0						GGACCTCAGACGACGGCTGAC	0.607		NaN											0	0	0	0.014758	0	4	35				
FER1L6	654463	broad.mit.edu	37	8	125082841	125082841	+	Splice_Site	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr8:125082841C>T	uc003yqw.2	+	30	4172	c.3966_splice	c.e30+2	p.K1322_splice	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6							integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AAATTTAAGGCAGGTTCCATT	0.418		NaN											0	0	0	0.027894	0	33	109				
FLJ43860	389690	broad.mit.edu	37	8	142481169	142481169	+	Missense_Mutation	SNP	C	C	G			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr8:142481169C>G	uc003ywi.2	-	16	2073	c.1992G>C	c.(1990-1992)TTG>TTC	p.L664F	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	664							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			TGTGGCACATCAAGAGCTGGT	0.592		NaN											0	0	0	0.01441	0	77	338				
C9orf46	55848	broad.mit.edu	37	9	5431965	5431965	+	Missense_Mutation	SNP	A	A	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr9:5431965A>T	uc003zjc.2	-	3	217	c.13T>A	c.(13-15)TTT>ATT	p.F5I	C9orf46_uc003zjd.2_Missense_Mutation_p.F5I	NM_018465	NP_060935	Q9HBL7	CI046_HUMAN	hypothetical protein LOC55848	5						integral to membrane				ovary(1)	1	all_hematologic(13;0.158)	Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.00106)|Lung(218;0.125)		GATTTTGAAAATATAAACCCC	0.313		NaN											0	0	0	0.021553	0	5	5				
RUSC2	9853	broad.mit.edu	37	9	35547012	35547012	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr9:35547012G>A	uc003zww.2	+	2	749	c.494G>A	c.(493-495)CGG>CAG	p.R165Q	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Missense_Mutation_p.R165Q	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	165						cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			ACACGCAGTCGGGCTGGAGTG	0.622		NaN											0	0	0	0.016522	0	22	69				
NOL8	55035	broad.mit.edu	37	9	95081520	95081520	+	Missense_Mutation	SNP	C	C	T			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr9:95081520C>T	uc004arv.2	-	5	737	c.400G>A	c.(400-402)GAA>AAA	p.E134K	NOL8_uc004arw.2_Intron|NOL8_uc011ltw.1_Missense_Mutation_p.E66K|NOL8_uc004arx.2_Missense_Mutation_p.E134K	NM_017948	NP_060418	Q76FK4	NOL8_HUMAN	nucleolar protein 8	134					DNA replication|positive regulation of cell growth	nucleolus	nucleotide binding|protein binding|RNA binding			ovary(1)	1						CCTGGCACTTCTGTCCCTGGC	0.463		NaN											0	0	0	0.016723	0	12	30				
NOTCH1	4851	broad.mit.edu	37	9	139399897	139399897	+	Missense_Mutation	SNP	T	T	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr9:139399897T>A	uc004chz.2	-	25	4451	c.4451A>T	c.(4450-4452)AAT>ATT	p.N1484I	NOTCH1_uc004cia.1_Missense_Mutation_p.N714I	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1484	Extracellular (Potential).|LNR 1.				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		CCAGGGGTCATTGAAGTTGAG	0.622		NaN	T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			0	0	0	0.020292	0	9	36				
CLCN4	1183	broad.mit.edu	37	X	10188760	10188760	+	Missense_Mutation	SNP	G	G	A			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chrX:10188760G>A	uc004csy.3	+	12	2465	c.2035G>A	c.(2035-2037)GAA>AAA	p.E679K	CLCN4_uc011mid.1_Missense_Mutation_p.E585K	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	679	Cytoplasmic (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						CTTCACGGAGGAACCCCCCGA	0.567		NaN											0	0	0	0.01441	0	109	35				
XAGE5	170627	broad.mit.edu	37	X	52844174	52844174	+	Silent	SNP	C	C	T	rs146352090		TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chrX:52844174C>T	uc004drd.1	+	4	302	c.237C>T	c.(235-237)TGC>TGT	p.C79C		NM_130775	NP_570131	Q8WWM1	GAGD5_HUMAN	X antigen family, member 5	79										ovary(1)	1						GGGATGAATGCGGAGATAGTC	0.438		NaN											0	0	0	0.008361	0	26	47				
MCL1	4170	broad.mit.edu	37	1	150551492	150551494	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:150551492_150551494delTCC	uc001euz.2	-	1	643_645	c.513_515delGGA	c.(511-516)GAGGAC>GAC	p.E171del	MCL1_uc010pch.1_In_Frame_Del_p.E61del|MCL1_uc001eva.2_In_Frame_Del_p.E171del	NM_021960	NP_068779	Q07820	MCL1_HUMAN	myeloid cell leukemia sequence 1 isoform 1	171	PEST-like.				anti-apoptosis|apoptosis|cell fate determination|cellular homeostasis|multicellular organismal development|response to cytokine stimulus	integral to membrane|mitochondrial outer membrane|nucleoplasm	BH3 domain binding|protein binding|protein channel activity|protein heterodimerization activity				0	all_cancers(9;1.69e-53)|all_epithelial(9;1.95e-43)|all_lung(15;1.09e-34)|Lung NSC(24;4.04e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GTACAACTCGTCCTCCTCCTCCT	0.635		NaN											NaN	NaN	NaN	NaN	NaN	7	192	---		---	---
TNR	7143	broad.mit.edu	37	1	175372615	175372615	+	Frame_Shift_Del	DEL	C	C	-			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:175372615delC	uc001gkp.1	-	2	718	c.637delG	c.(637-639)GTGfs	p.V213fs	TNR_uc009wwu.1_Frame_Shift_Del_p.V213fs|TNR_uc010pmz.1_Frame_Shift_Del_p.V213fs	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	213	Cys-rich.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TCCACACACACCCCCCGGCTG	0.607		NaN											NaN	NaN	NaN	NaN	NaN	7	611	---		---	---
CACNA1S	779	broad.mit.edu	37	1	201029886	201029886	+	Frame_Shift_Del	DEL	T	T	-			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:201029886delT	uc001gvv.2	-	26	3541	c.3314delA	c.(3313-3315)AACfs	p.N1105fs		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1105	Cytoplasmic (Potential).|IV.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CTGGTATGGGTTTTTGGGAAT	0.532		NaN											NaN	NaN	NaN	NaN	NaN	7	785	---		---	---
ELF3	1999	broad.mit.edu	37	1	201981520	201981521	+	Frame_Shift_Ins	INS	-	-	G			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08			-	G	-	-		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr1:201981520_201981521insG	uc001gxg.3	+	3	3626_3627	c.434_435insG	c.(433-435)AAGfs	p.K145fs	ELF3_uc001gxi.3_Frame_Shift_Ins_p.K145fs|ELF3_uc001gxh.3_Frame_Shift_Ins_p.K145fs	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	145	9aaTAD.				epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						CTGCTGGAGAAGGATGGCATGG	0.579		NaN											NaN	NaN	NaN	NaN	NaN	25	184	---	Valid	---	---
JUP	3728	broad.mit.edu	37	17	39681230	39681231	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr17:39681230_39681231insAG	uc010wfs.1	-	6	1021_1022	c.1013_1014insCT	c.(1012-1014)CTGfs	p.L338fs	KRT19_uc002hxd.3_Frame_Shift_Ins_p.L175fs	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	Error:Variant_position_missing_in_P14923_after_alignment					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		CGCTCATGCGCAGAGCCTGTTC	0.584		NaN											NaN	NaN	NaN	NaN	NaN	77	120	---		---	---
ST6GALNAC1	55808	broad.mit.edu	37	17	74625715	74625716	+	Frame_Shift_Del	DEL	TG	TG	-	rs8081258	byFrequency	TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr17:74625715_74625716delTG	uc002jsh.2	-	2	383_384	c.209_210delCA	c.(208-210)GCAfs	p.A70fs	ST6GALNAC1_uc002jsi.2_5'UTR|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	70	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						TTGTCCTCCTTGCCCTTGTGGG	0.535		NaN											NaN	NaN	NaN	NaN	NaN	70	141	---		---	---
ZNF578	147660	broad.mit.edu	37	19	53014654	53014654	+	Frame_Shift_Del	DEL	G	G	-			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr19:53014654delG	uc002pzp.3	+	6	1264	c.1020delG	c.(1018-1020)GAGfs	p.E340fs		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	115					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		ACACTGGTGAGAAACCTTACA	0.403		NaN											NaN	NaN	NaN	NaN	NaN	21	119	---		---	---
C20orf186	149954	broad.mit.edu	37	20	31685499	31685501	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr20:31685499_31685501delAGA	uc010zue.1	+	11	1490_1492	c.1475_1477delAGA	c.(1474-1479)CAGAAG>CAG	p.K493del		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	493						cytoplasm|extracellular region	lipid binding				0						GTGATGCTGCAGAAGGACAAAGC	0.576		NaN											NaN	NaN	NaN	NaN	NaN	28	140	---		---	---
FBLN2	2199	broad.mit.edu	37	3	13612699	13612701	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:13612699_13612701delGAG	uc011avb.1	+	2	969_971	c.844_846delGAG	c.(844-846)GAGdel	p.E286del	FBLN2_uc011auz.1_In_Frame_Del_p.E312del|FBLN2_uc011ava.1_In_Frame_Del_p.E286del|FBLN2_uc011avc.1_In_Frame_Del_p.E286del	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	286	Subdomain NB (Cys-free).|N.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			ggaggaagaagaggaggaggagg	0.557		NaN											NaN	NaN	NaN	NaN	NaN	7	350	---		---	---
MAP4	4134	broad.mit.edu	37	3	47913557	47913558	+	In_Frame_Ins	INS	-	-	CCG			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr3:47913557_47913558insCCG	uc003csb.2	-	11	2881_2882	c.2355_2356insCGG	c.(2353-2358)insCGG	p.785_786insR	MAP4_uc003csc.3_In_Frame_Ins_p.785_786insR|MAP4_uc003crw.2_5'Flank|MAP4_uc003crx.2_In_Frame_Ins_p.45_46insR|MAP4_uc011bbe.1_In_Frame_Ins_p.536_537insR|MAP4_uc003cry.2_In_Frame_Ins_p.520_521insR|MAP4_uc003csa.3_In_Frame_Ins_p.520_521insR|MAP4_uc003crz.3_RNA|MAP4_uc003csd.2_In_Frame_Ins_p.520_521insR	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	785_786					negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		GATGGTGAGGCCCGCTTCTCAG	0.55		NaN											NaN	NaN	NaN	NaN	NaN	74	256	---		---	---
FGFRL1	53834	broad.mit.edu	37	4	1019055	1019056	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr4:1019055_1019056delCA	uc003gce.2	+	7	1596_1597	c.1435_1436delCA	c.(1435-1437)CACfs	p.H479fs	FGFRL1_uc003gcf.2_Frame_Shift_Del_p.H479fs|FGFRL1_uc003gcg.2_Frame_Shift_Del_p.H479fs|FGFRL1_uc010ibo.2_Frame_Shift_Del_p.H479fs	NM_021923	NP_068742	Q8N441	FGRL1_HUMAN	fibroblast growth factor receptor-like 1	479	His-rich.|Cytoplasmic (Potential).				regulation of cell growth	integral to membrane|plasma membrane	fibroblast growth factor receptor activity|heparin binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			cacagacatccacacacacaca	0.46		NaN											NaN	NaN	NaN	NaN	NaN	5	10	---		---	---
C6orf153	88745	broad.mit.edu	37	6	42989434	42989451	+	In_Frame_Del	DEL	CGGGGCCCGACGTCCCCG	CGGGGCCCGACGTCCCCG	-	rs60664426		TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr6:42989434_42989451delCGGGGCCCGACGTCCCCG	uc003otp.1	+	1	50_67	c.42_59delCGGGGCCCGACGTCCCCG	c.(40-60)GCCGGGGCCCGACGTCCCCGC>GCC	p.GARRPR15del		NM_033112	NP_149103	Q96EU6	RRP36_HUMAN	hypothetical protein LOC88745	15_20					ribosomal small subunit biogenesis|rRNA processing	nucleolus					0			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			gggccggggccggggcccgacgtccccgcggggcccgg	0.55		NaN											NaN	NaN	NaN	NaN	NaN	3	3	---		---	---
THSD7A	221981	broad.mit.edu	37	7	11871469	11871470	+	In_Frame_Ins	INS	-	-	GCAGCG			TCGA-GV-A3JV-01A-11D-A21Z-08	TCGA-GV-A3JV-10B-01D-A21Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5fed4b8a-4b59-4424-bbf1-bc73ce041361	f9fd3c7e-20a6-4d48-a45b-6482fdc10173	g.chr7:11871469_11871470insGCAGCG	uc003ssf.3	-	1	355_356	c.103_104insCGCTGC	c.(103-105)CTC>CCGCTGCTC	p.34_35insPL		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	34_35						integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		cagcagcaggagcagcggcagc	0.436		NaN								HNSCC(18;0.044)			NaN	NaN	NaN	NaN	NaN	4	8	---		---	---
