Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	isArtifactMode	oxoGCut	pox	pox_cutoff	qox	t_alt_count	t_ref_count	validation_alt_allele	validation_by_all_platform	validation_method	validation_tumor_sample
DCDC2B	149069	broad.mit.edu	37	1	32678173	32678173	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:32678173G>A	uc001bun.2	+	5	610	c.610G>A	c.(610-612)GAG>AAG	p.E204K		NM_001099434	NP_001092904	A2VCK2	DCD2B_HUMAN	doublecortin domain containing 2B	204	Doublecortin 2.				intracellular signal transduction						0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				CGGAGAGGATGAGTTCAAGGA	0.612		NaN											0	0	0	0.009535	0	33	85				
HPCA	3208	broad.mit.edu	37	1	33354707	33354707	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:33354707C>T	uc001bwh.2	+	2	248	c.208C>T	c.(208-210)CGC>TGC	p.R70C		NM_002143	NP_002134	P84074	HPCA_HUMAN	hippocalcin	70	EF-hand 2.						actin binding|calcium ion binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				GCACGTCTTCCGCACCTTTGA	0.557		NaN											0	0	0	0.009718	0	37	119				
MACF1	23499	broad.mit.edu	37	1	39851577	39851577	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:39851577C>T	uc010oiu.1	+	21	9771	c.9640C>T	c.(9640-9642)CTC>TTC	p.L3214F	MACF1_uc010ois.1_Missense_Mutation_p.L2712F|MACF1_uc001cda.1_Missense_Mutation_p.L2599F|MACF1_uc001cdc.1_Missense_Mutation_p.L1778F	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	4779	LRR 18.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TGCCCTGCCTCTCCAAGGTTT	0.483		NaN											0	0	0	0.00632	0	24	54				
GLIS1	148979	broad.mit.edu	37	1	54060263	54060263	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:54060263G>A	uc001cvr.1	-	3	880	c.313C>T	c.(313-315)CGG>TGG	p.R105W		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	105					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						GGGGGGCTCCGGAGTCCATTT	0.662		NaN											0	0	0	0.010729	0	9	33				
LRRIQ3	127255	broad.mit.edu	37	1	74507362	74507362	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:74507362C>T	uc001dfy.3	-	7	1445	c.1253G>A	c.(1252-1254)CGA>CAA	p.R418Q	LRRIQ3_uc001dfz.3_Intron	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	418										ovary(2)	2						ACTAAATGTTCGGAGTTTCAT	0.363		NaN											0	0	0	0.013537	0	13	30				
LPHN2	23266	broad.mit.edu	37	1	82436188	82436188	+	Missense_Mutation	SNP	T	T	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:82436188T>C	uc001dit.3	+	15	3054	c.2873T>C	c.(2872-2874)ATT>ACT	p.I958T	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.I958T|LPHN2_uc001div.2_Missense_Mutation_p.I958T|LPHN2_uc009wcd.2_Missense_Mutation_p.I958T|LPHN2_uc001diw.2_Missense_Mutation_p.I542T|LPHN2_uc009wce.1_Missense_Mutation_p.I44T	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	971	Helical; Name=4; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		TCAGCTGCTATTGACTATAAG	0.353		NaN											0	0	0	0.010729	0	11	35				
CELSR2	1952	broad.mit.edu	37	1	109806339	109806339	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:109806339C>T	uc001dxa.3	+	9	5002	c.4941C>T	c.(4939-4941)CGC>CGT	p.R1647R		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	1647	Extracellular (Potential).|Laminin G-like 2.				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TCCGCACGCGCCAGGCCGACG	0.667		NaN									OREG0013632	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	0	0	0	0.00874	0	39	104				
C1orf183	55924	broad.mit.edu	37	1	112269937	112269937	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:112269937C>G	uc001ebo.1	-	2	705	c.547G>C	c.(547-549)GAG>CAG	p.E183Q	C1orf183_uc001ebp.1_Missense_Mutation_p.E168Q	NM_019099	NP_061972	Q9NTI7	CA183_HUMAN	hypothetical protein LOC55924 isoform 1	183										ovary(2)	2		all_cancers(81;7.29e-06)|all_epithelial(167;4.98e-06)|all_lung(203;2.44e-05)|Lung NSC(69;4.16e-05)		Lung(183;0.0155)|Colorectal(144;0.0289)|all cancers(265;0.0592)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0852)|COAD - Colon adenocarcinoma(174;0.113)		CCCCCAGTCTCACCCTTCTCC	0.577		NaN											0	0	0	0.01441	0	68	53				
PDE4DIP	9659	broad.mit.edu	37	1	144923816	144923816	+	Missense_Mutation	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:144923816C>A	uc001elw.3	-	6	933	c.642G>T	c.(640-642)ATG>ATT	p.M214I	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.M280I|PDE4DIP_uc001emc.1_Missense_Mutation_p.M214I|PDE4DIP_uc001emd.1_Missense_Mutation_p.M214I|PDE4DIP_uc001emb.1_Missense_Mutation_p.M377I|PDE4DIP_uc001eme.1_5'Flank|PDE4DIP_uc001emf.1_Missense_Mutation_p.M1I	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	214					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		ACTCTTCAGTCATGGGCTAGG	0.398		NaN	T	PDGFRB	MPD								1	0	1.15919e-05	0.008871	1.20509e-05	20	191				
ZNF687	57592	broad.mit.edu	37	1	151260360	151260360	+	Silent	SNP	C	C	T	rs142842127	byFrequency	TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:151260360C>T	uc001exq.2	+	2	1691	c.1593C>T	c.(1591-1593)ACC>ACT	p.T531T	ZNF687_uc001exp.1_Silent_p.T540T|ZNF687_uc009wmo.2_Silent_p.T531T|ZNF687_uc009wmp.2_Silent_p.T531T	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	531					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TGCCTCCCACCGGCTACCGCT	0.617		NaN											0	0	0	0.003163	0	15	76				
APCS	325	broad.mit.edu	37	1	159557901	159557901	+	Silent	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:159557901G>C	uc001ftv.2	+	2	171	c.75G>C	c.(73-75)GGG>GGC	p.G25G		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	25	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					ACCTCAGTGGGAAGGTGTTTG	0.393		NaN											0	0	0	0.013537	0	11	49				
PVRL4	81607	broad.mit.edu	37	1	161046208	161046208	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:161046208C>G	uc001fxo.2	-	4	1087	c.788G>C	c.(787-789)AGA>ACA	p.R263T	PVRL4_uc010pjy.1_5'Flank|PVRL4_uc010pjz.1_5'UTR	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	263	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			AGCTCCTTCTCTGCCAATGTG	0.552		NaN											0	0	0	0.00874	0	44	66				
FCGR2A	2212	broad.mit.edu	37	1	161480706	161480706	+	Silent	SNP	T	T	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:161480706T>A	uc001gan.2	+	5	755	c.702T>A	c.(700-702)GCT>GCA	p.A234A	FCGR2A_uc001gam.2_Silent_p.A233A|FCGR2A_uc001gao.2_RNA	NM_001136219	NP_001129691	P12318	FCG2A_HUMAN	Fc fragment of IgG, low affinity IIa, receptor	234	Helical; (Potential).					integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TTGTTGCTGCTGTAGTGGCCT	0.517		NaN											0	0	0	0.01441	0	47	225				
GORAB	92344	broad.mit.edu	37	1	170511708	170511708	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:170511708C>G	uc001gha.2	+	3	598	c.571C>G	c.(571-573)CTT>GTT	p.L191V	GORAB_uc001ggz.3_Missense_Mutation_p.L191V|GORAB_uc009wvx.2_Missense_Mutation_p.L11V|GORAB_uc001ghb.2_Missense_Mutation_p.L11V|GORAB_uc001ghc.2_Missense_Mutation_p.L11V|GORAB_uc001ghd.2_5'Flank	NM_152281	NP_689494	Q5T7V8	GORAB_HUMAN	golgin, RAB6-interacting isoform a	191	Potential.					Golgi apparatus|nucleus					0						TAAAAAAGCTCTTTTGGCTAA	0.403		NaN											0	0	0	0.014323	0	20	89				
IVNS1ABP	10625	broad.mit.edu	37	1	185269586	185269586	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:185269586G>C	uc001grl.2	-	11	1848	c.1225C>G	c.(1225-1227)CAA>GAA	p.Q409E	IVNS1ABP_uc001gri.2_Missense_Mutation_p.Q69E|IVNS1ABP_uc001grj.2_Missense_Mutation_p.Q69E|IVNS1ABP_uc009wyj.2_Missense_Mutation_p.Q191E|IVNS1ABP_uc009wyk.2_RNA|IVNS1ABP_uc001grm.2_Missense_Mutation_p.Q69E	NM_006469	NP_006460	Q9Y6Y0	NS1BP_HUMAN	influenza virus NS1A binding protein	409	Kelch 1.				interspecies interaction between organisms|response to virus|RNA splicing|transcription from RNA polymerase III promoter	cytoplasm|cytoskeleton|spliceosomal complex|transcription factor complex				ovary(4)|central_nervous_system(1)	5						ACAGCCATTTGAAATCGGGCT	0.428		NaN											0	0	0	0.000602	0	5	29				
IL19	29949	broad.mit.edu	37	1	207014389	207014389	+	Missense_Mutation	SNP	A	A	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:207014389A>T	uc001hep.2	+	6	1343	c.404A>T	c.(403-405)AAT>ATT	p.N135I	IL19_uc001heo.2_Missense_Mutation_p.N173I	NM_013371	NP_037503	Q9UHD0	IL19_HUMAN	interleukin 19 isoform 2 precursor	135					apoptosis|immune response|signal transduction	extracellular space	cytokine activity			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(75;0.211)			GAAGCCACCAATGCCACCAGA	0.517		NaN											0	0	0	0.013537	0	13	27				
CEP170	9859	broad.mit.edu	37	1	243328008	243328008	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:243328008G>A	uc001hzs.2	-	13	3662	c.3254C>T	c.(3253-3255)TCA>TTA	p.S1085L	CEP170_uc001hzt.2_Missense_Mutation_p.S987L|CEP170_uc001hzu.2_Missense_Mutation_p.S987L|CEP170_uc001hzv.1_Missense_Mutation_p.S463L	NM_014812	NP_055627	Q5SW79	CE170_HUMAN	centrosomal protein 170kDa isoform alpha	1085	Targeting to microtubules.					centriole|microtubule|spindle				ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2	all_neural(11;0.101)	all_cancers(173;0.003)	all cancers(7;5.81e-06)|GBM - Glioblastoma multiforme(7;0.000443)|OV - Ovarian serous cystadenocarcinoma(106;0.0101)			TTTACTAGATGAACCAGATAC	0.483		NaN											0	0	0	0.001168	0	4	34				
OR2M7	391196	broad.mit.edu	37	1	248487560	248487560	+	Missense_Mutation	SNP	T	T	C	rs41304034		TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:248487560T>C	uc010pzk.1	-	1	311	c.311A>G	c.(310-312)TAT>TGT	p.Y104C		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CAATGATATATAGAAGAAAAT	0.458		NaN											0	0	0	0.01441	0	62	74				
KIN	22944	broad.mit.edu	37	10	7816818	7816818	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr10:7816818G>A	uc001ijt.2	-	7	692	c.644C>T	c.(643-645)TCC>TTC	p.S215F	KIN_uc010qaz.1_RNA|KIN_uc009xip.2_Missense_Mutation_p.S215F|KIN_uc010qba.1_Missense_Mutation_p.S109F	NM_012311	NP_036443	O60870	KIN17_HUMAN	HsKin17 protein	215					DNA recombination|DNA repair|DNA replication|interspecies interaction between organisms|mRNA processing	cytoplasm|nuclear matrix	double-stranded DNA binding|RNA binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TGTTGCTCCGGATGAGCTACA	0.313		NaN											0	0	0	0.008871	0	18	87				
DCLRE1C	64421	broad.mit.edu	37	10	14977537	14977537	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr10:14977537G>C	uc001inn.2	-	6	474	c.389C>G	c.(388-390)ACT>AGT	p.T130S	DCLRE1C_uc010qbx.1_Missense_Mutation_p.T130S|DCLRE1C_uc001inl.2_Missense_Mutation_p.T10S|DCLRE1C_uc009xji.2_Missense_Mutation_p.T15S|DCLRE1C_uc001inm.2_Missense_Mutation_p.T10S|DCLRE1C_uc001ino.2_Missense_Mutation_p.T15S|DCLRE1C_uc009xjh.2_RNA|DCLRE1C_uc001inp.2_Missense_Mutation_p.T10S|DCLRE1C_uc001inq.2_Missense_Mutation_p.T10S|DCLRE1C_uc001inr.2_Missense_Mutation_p.T15S|DCLRE1C_uc009xjj.1_5'Flank	NM_001033855	NP_001029027	Q96SD1	DCR1C_HUMAN	artemis protein isoform a	130					DNA recombination	nucleus	5'-3' exonuclease activity|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)	1						GTACAGGACAGTTCCATTATT	0.443		NaN						Involved_in_tolerance_or_repair_of_DNA_crosslinks|NHEJ					0	0	0	0.007413	0	17	116				
CCNY	219771	broad.mit.edu	37	10	35819118	35819118	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr10:35819118C>T	uc001iyw.3	+	7	706	c.526C>T	c.(526-528)CGG>TGG	p.R176W	CCNY_uc001iyu.3_Missense_Mutation_p.R122W|CCNY_uc001iyv.3_Missense_Mutation_p.R122W|CCNY_uc001iyx.3_Missense_Mutation_p.R122W|CCNY_uc009xmb.2_Missense_Mutation_p.R151W|CCNY_uc010qet.1_Missense_Mutation_p.R43W	NM_145012	NP_659449	Q8ND76	CCNY_HUMAN	cyclin Y isoform 1	176	Cyclin N-terminal.				cell division|G2/M transition of mitotic cell cycle|positive regulation of cyclin-dependent protein kinase activity|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	cyclin-dependent protein kinase regulator activity|protein kinase binding				0						CCGGTTCGTTCGGACACTGTT	0.532		NaN											0	0	0	0.004007	0	17	42				
C10orf72	196740	broad.mit.edu	37	10	50227712	50227712	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr10:50227712C>T	uc001jhf.2	-	8	975	c.946G>A	c.(946-948)GAG>AAG	p.E316K		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	316	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						TTGTTCTCCTCGAAGAGGATC	0.522		NaN											0	0	0	0.008871	0	18	59				
CTNNA3	29119	broad.mit.edu	37	10	68979430	68979430	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr10:68979430G>A	uc009xpn.1	-	6	901	c.778C>T	c.(778-780)CAG>TAG	p.Q260*	CTNNA3_uc001jmw.2_Nonsense_Mutation_p.Q260*|CTNNA3_uc001jmx.3_Nonsense_Mutation_p.Q260*|CTNNA3_uc009xpo.1_Nonsense_Mutation_p.Q120*|CTNNA3_uc001jna.2_Nonsense_Mutation_p.Q272*	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	260					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						GTCATATTCTGGATCCCTTGT	0.458		NaN											0	0	0	0.000602	0	5	112				
TTC18	118491	broad.mit.edu	37	10	75013740	75013740	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr10:75013740G>C	uc009xrc.2	-	28	3480	c.3359C>G	c.(3358-3360)TCT>TGT	p.S1120C	TTC18_uc001jty.2_Missense_Mutation_p.S1120C|MRPS16_uc010qkh.1_5'Flank|MRPS16_uc001jts.1_5'Flank|MRPS16_uc001jtt.1_5'Flank|uc001jtu.1_RNA|TTC18_uc001jtv.3_Missense_Mutation_p.S224C|TTC18_uc001jtw.3_Missense_Mutation_p.S194C|TTC18_uc001jtx.2_Missense_Mutation_p.S471C	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	1120							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					GTATCAGAAAGATGGATTTCC	0.458		NaN											0	0	0	0.00278	0	21	83				
GBF1	8729	broad.mit.edu	37	10	104123535	104123535	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr10:104123535G>A	uc001kux.1	+	17	2323	c.2083G>A	c.(2083-2085)GAA>AAA	p.E695K	GBF1_uc001kuy.1_Missense_Mutation_p.E695K|GBF1_uc001kuz.1_Missense_Mutation_p.E696K	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	695	SEC7.				COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		GGAACTAATTGAAATTAAAAA	0.463		NaN											0	0	0	0.00333	0	24	96				
C10orf79	80217	broad.mit.edu	37	10	105912421	105912421	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr10:105912421C>T	uc001kxw.2	-	28	3720	c.3604G>A	c.(3604-3606)GAA>AAA	p.E1202K	C10orf79_uc009xxq.2_Missense_Mutation_p.E510K	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1202	Potential.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TTCAAATGTTCATCAAAGGCC	0.328		NaN											0	0	0	0.001168	0	5	40				
TDRD1	56165	broad.mit.edu	37	10	115962010	115962010	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr10:115962010G>A	uc001lbg.1	+	6	802	c.649G>A	c.(649-651)GAA>AAA	p.E217K	TDRD1_uc001lbf.2_Missense_Mutation_p.E208K|TDRD1_uc001lbh.1_Missense_Mutation_p.E208K|TDRD1_uc001lbi.1_Missense_Mutation_p.E208K|TDRD1_uc010qsc.1_5'Flank|TDRD1_uc001lbj.2_5'Flank	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	217					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		CCACAAACTTGAAAATAAATC	0.299		NaN											0	0	0	0.008291	0	11	23				
FOXI2	399823	broad.mit.edu	37	10	129536033	129536033	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr10:129536033G>A	uc009yas.2	+	1	496	c.496G>A	c.(496-498)GAC>AAC	p.D166N	uc009yar.1_5'Flank	NM_207426	NP_997309	Q6ZQN5	FOXI2_HUMAN	forkhead box I2	166	Fork-head.				epidermal cell fate specification|otic placode formation|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_epithelial(44;0.0021)|all_lung(145;0.0586)|Lung NSC(174;0.0765)|all_neural(114;0.201)|Glioma(114;0.222)				GGTGCCCCGCGACGAGGACGA	0.667		NaN											0	0	0	0.009096	0	4	19				
PPP2R2D	55844	broad.mit.edu	37	10	133769275	133769275	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr10:133769275G>C	uc001lks.2	+	7	1314	c.1071G>C	c.(1069-1071)GAG>GAC	p.E357D	PPP2R2D_uc001lkr.2_Missense_Mutation_p.E163D|PPP2R2D_uc001lkt.2_Missense_Mutation_p.E163D|PPP2R2D_uc009yay.2_Missense_Mutation_p.E225D	NM_018461	NP_060931	Q66LE6	2ABD_HUMAN	protein phosphatase 2, regulatory subunit B,	390					cell division|exit from mitosis|mitosis|signal transduction	cytoplasm|protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			skin(1)	1		all_cancers(35;2.16e-12)|all_epithelial(44;2.77e-09)|Lung NSC(174;0.00237)|all_lung(145;0.00354)|Colorectal(31;0.0124)|Breast(234;0.023)|all_neural(114;0.0299)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;7.86e-05)|Epithelial(32;8.82e-05)|all cancers(32;0.000106)|BRCA - Breast invasive adenocarcinoma(275;0.21)		CCTCGAGAGAGAGCAGCAAAC	0.547		NaN											0	0	0	0.007413	0	19	46				
OR51M1	390059	broad.mit.edu	37	11	5411026	5411026	+	Missense_Mutation	SNP	A	A	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr11:5411026A>T	uc010qzc.1	+	1	398	c.398A>T	c.(397-399)GAC>GTC	p.D133V	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	133						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATGTCCTTTGACCGCCTTGTG	0.507		NaN											0	0	0	0.009096	0	4	69				
RAG2	5897	broad.mit.edu	37	11	36614207	36614207	+	Silent	SNP	G	G	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr11:36614207G>T	uc001mwv.3	-	2	1700	c.1512C>A	c.(1510-1512)TCC>TCA	p.S504S	RAG1_uc001mwt.2_Intron|C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	504					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				TTTTACGGAGGGATTTCATTG	0.413		NaN							Familial_Hemophagocytic_Lymphohistiocytosis				1	0	8.28177e-16	0.007413	9.10561e-16	18	44				
FNBP4	23360	broad.mit.edu	37	11	47741610	47741610	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr11:47741610G>C	uc009ylv.2	-	16	2987	c.2834C>G	c.(2833-2835)TCT>TGT	p.S945C	FNBP4_uc001ngi.2_Missense_Mutation_p.S259C|FNBP4_uc001ngj.2_Missense_Mutation_p.S852C	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	945										ovary(1)	1						TTTTACCAAAGATGGCATTTT	0.398		NaN											0	0	0	0.013537	0	11	24				
OR5D18	219438	broad.mit.edu	37	11	55587183	55587183	+	Silent	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr11:55587183C>G	uc010rin.1	+	1	78	c.78C>G	c.(76-78)GTC>GTG	p.V26V		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	26	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				AACTGCAAGTCCCACTCTTCC	0.463		NaN											0	0	0	0.004482	0	8	30				
OR8K3	219473	broad.mit.edu	37	11	56085825	56085825	+	Missense_Mutation	SNP	A	A	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr11:56085825A>T	uc010rjf.1	+	1	43	c.43A>T	c.(43-45)ACG>TCG	p.T15S		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ATTCATTCTTACGGGAATCAC	0.418		NaN											0	0	0	0.004672	0	3	40				
C11orf84	144097	broad.mit.edu	37	11	63585488	63585488	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr11:63585488G>C	uc001nxt.2	+	2	575	c.339G>C	c.(337-339)CAG>CAC	p.Q113H		NM_138471	NP_612480	Q9BUA3	CK084_HUMAN	hypothetical protein LOC144097	113											0						TCTTGGAGCAGCACCCTCACA	0.642		NaN											0	0	0	0.008291	0	10	51				
PPP1CA	5499	broad.mit.edu	37	11	67168200	67168200	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr11:67168200C>G	uc001okw.1	-	3	501	c.378G>C	c.(376-378)GAG>GAC	p.E126D	PPP1CA_uc009yro.1_5'UTR|PPP1CA_uc001okt.1_Missense_Mutation_p.E131D|PPP1CA_uc001oku.1_Missense_Mutation_p.E137D|PPP1CA_uc001okv.1_Missense_Mutation_p.E82D|PPP1CA_uc001okx.1_Missense_Mutation_p.E214D|PPP1CA_uc001oky.2_Missense_Mutation_p.E126D	NM_002708	NP_002699	P62136	PP1A_HUMAN	protein phosphatase 1, catalytic subunit, alpha	126					cell cycle|cell division|glycogen metabolic process|protein dephosphorylation|triglyceride catabolic process	cytosol|MLL5-L complex|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|protein binding|protein phosphatase type 1 regulator activity|protein serine/threonine phosphatase activity			breast(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(15;8.53e-07)			TGCTGGCACACTCGTGGTTCC	0.562		NaN											0	0	0	0.00499	0	17	81				
XRRA1	143570	broad.mit.edu	37	11	74556166	74556166	+	Nonsense_Mutation	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr11:74556166C>A	uc009yub.2	-	16	2187	c.1855G>T	c.(1855-1857)GAA>TAA	p.E619*	XRRA1_uc001ovm.2_RNA|XRRA1_uc001ovn.2_Nonsense_Mutation_p.E242*|XRRA1_uc001ovo.2_Nonsense_Mutation_p.E227*|XRRA1_uc001ovq.3_Nonsense_Mutation_p.E532*|XRRA1_uc001ovp.3_Nonsense_Mutation_p.E344*|XRRA1_uc001ovr.2_Nonsense_Mutation_p.E242*|XRRA1_uc001ovs.1_Nonsense_Mutation_p.E221*	NM_182969	NP_892014	Q6P2D8	XRRA1_HUMAN	X-ray radiation resistance associated 1	619					response to X-ray	cytoplasm|nucleus				central_nervous_system(1)	1						AGCAGTTCTTCATAGCCGTGG	0.537		NaN											1	0	2.01872e-29	0.01441	2.25495e-29	41	105				
C11orf82	220042	broad.mit.edu	37	11	82642952	82642952	+	Missense_Mutation	SNP	G	G	A	rs143776868	byFrequency	TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr11:82642952G>A	uc001ozt.2	+	6	816	c.572G>A	c.(571-573)AGG>AAG	p.R191K	C11orf82_uc010rsr.1_5'UTR|C11orf82_uc010rss.1_5'UTR|C11orf82_uc009yvd.2_Intron	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	191					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						TTTAATTTCAGGAAACTTCAG	0.408		NaN											0	0	0	0.000602	0	4	87				
C11orf63	79864	broad.mit.edu	37	11	122795698	122795698	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr11:122795698C>T	uc001pym.2	+	4	1255	c.958C>T	c.(958-960)CAA>TAA	p.Q320*		NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	320										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		TAAATGGCATCAAAGAGCACA	0.408		NaN											0	0	0	0.004656	0	26	8				
VWF	7450	broad.mit.edu	37	12	6161750	6161750	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:6161750G>C	uc001qnn.1	-	16	2395	c.2145C>G	c.(2143-2145)ATC>ATG	p.I715M	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	715					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CTGGCTGGAAGATCTCACCGT	0.512		NaN											0	0	0	0.01441	0	109	133				
CDCA3	83461	broad.mit.edu	37	12	6958994	6958994	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:6958994C>T	uc001qrg.2	-	4	407	c.279G>A	c.(277-279)CTG>CTA	p.L93L	CDCA3_uc001qre.2_Silent_p.L93L|uc001qrf.1_5'Flank|USP5_uc001qri.3_5'Flank|USP5_uc001qrh.3_5'Flank	NM_031299	NP_112589	Q99618	CDCA3_HUMAN	cell division cycle associated 3	93	F-box-like.				cell division|mitosis	cytosol					0						ATACTTCACTCAGCTGTTTCA	0.463		NaN											0	0	0	0.014323	0	23	119				
C1S	716	broad.mit.edu	37	12	7177163	7177163	+	Nonsense_Mutation	SNP	T	T	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:7177163T>A	uc001qsj.2	+	15	1994	c.1275T>A	c.(1273-1275)TGT>TGA	p.C425*	C1S_uc001qsk.2_Nonsense_Mutation_p.C425*|C1S_uc001qsl.2_Nonsense_Mutation_p.C425*|C1S_uc009zfr.2_Nonsense_Mutation_p.C258*|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	425					complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	TCCTAGTCTGTGGAGTCCCCA	0.443		NaN											0	0	0	0.00278	0	22	128				
CSDA	8531	broad.mit.edu	37	12	10854593	10854593	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:10854593C>T	uc001qyt.2	-	8	1262	c.1019G>A	c.(1018-1020)CGT>CAT	p.R340H	CSDA_uc001qyu.2_Missense_Mutation_p.R271H	NM_003651	NP_003642	P16989	DBPA_HUMAN	cold shock domain protein A isoform a	340					negative regulation of transcription from RNA polymerase II promoter|response to cold	cytoplasm|nucleus	double-stranded DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|lung(1)|large_intestine(1)	4	Glioma(1;0.155)					GTTAGGAGGACGCGGGCGACG	0.517		NaN											0	0	0	0.01441	0	111	194				
C12orf35	55196	broad.mit.edu	37	12	32136551	32136551	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:32136551G>C	uc001rks.2	+	4	3076	c.2662G>C	c.(2662-2664)GAT>CAT	p.D888H		NM_018169	NP_060639	Q9HCM1	CL035_HUMAN	hypothetical protein LOC55196	888										ovary(1)|skin(1)	2	all_cancers(9;3.36e-11)|all_epithelial(9;2.56e-11)|all_lung(12;5.67e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0114)			TGTGAGTAGTGATACATTACA	0.373		NaN											0	0	0	0.00623	0	40	56				
PKP2	5318	broad.mit.edu	37	12	32955491	32955491	+	Splice_Site	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:32955491C>A	uc001rlj.3	-	11	2261	c.2146_splice	c.e11-1	p.M716_splice	PKP2_uc001rlk.3_Splice_Site_p.M672_splice|PKP2_uc010skj.1_Splice_Site_p.M669_splice	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b						cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					ATGTCGGCATCTGTTTTGTGA	0.408		NaN											1	0	8.60227e-14	0.004007	9.40874e-14	12	89				
TMBIM6	7009	broad.mit.edu	37	12	50149478	50149478	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:50149478C>T	uc001rux.2	+	4	358	c.226C>T	c.(226-228)CAT>TAT	p.H76Y	TMBIM6_uc010sml.1_Missense_Mutation_p.H76Y|TMBIM6_uc001ruy.2_Missense_Mutation_p.H134Y|TMBIM6_uc001ruz.2_Missense_Mutation_p.H76Y	NM_003217	NP_003208	P55061	BI1_HUMAN	testis enhanced gene transcript (BAX inhibitor	76					apoptosis|negative regulation of apoptosis	endoplasmic reticulum|insoluble fraction|integral to plasma membrane|nucleus					0						GGCAACACCTCATAGCCATGA	0.433		NaN											0	0	0	0.003954	0	26	182				
LIMA1	51474	broad.mit.edu	37	12	50571472	50571472	+	Nonsense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:50571472G>C	uc001rwj.3	-	11	1829	c.1655C>G	c.(1654-1656)TCA>TGA	p.S552*	LIMA1_uc001rwg.3_Nonsense_Mutation_p.S250*|LIMA1_uc001rwh.3_Nonsense_Mutation_p.S391*|LIMA1_uc001rwi.3_Nonsense_Mutation_p.S393*|LIMA1_uc001rwk.3_Nonsense_Mutation_p.S553*|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	552					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						TTTGGGCTTTGACATTTTGAT	0.502		NaN											0	0	0	0.009535	0	31	183				
ERBB3	2065	broad.mit.edu	37	12	56482341	56482341	+	Missense_Mutation	SNP	G	G	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08			G	T	G	G		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:56482341G>T	uc001sjh.2	+	8	1082	c.889G>T	c.(889-891)GAT>TAT	p.D297Y	ERBB3_uc009zoj.2_RNA|ERBB3_uc010sqb.1_Intron|ERBB3_uc010sqc.1_Missense_Mutation_p.D238Y|ERBB3_uc001sji.2_5'UTR	NM_001982	NP_001973	P21860	ERBB3_HUMAN	erbB-3 isoform 1 precursor	297	Extracellular (Potential).				cranial nerve development|heart development|negative regulation of cell adhesion|negative regulation of neuron apoptosis|negative regulation of secretion|negative regulation of signal transduction|neuron apoptosis|phosphatidylinositol 3-kinase cascade|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of cell proliferation|Schwann cell differentiation|transmembrane receptor protein tyrosine kinase signaling pathway|wound healing	basolateral plasma membrane|extracellular space|integral to plasma membrane|receptor complex	ATP binding|growth factor binding|protein heterodimerization activity|protein homodimerization activity|protein tyrosine kinase activator activity|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(3)|central_nervous_system(2)|stomach(1)|ovary(1)|skin(1)	8			OV - Ovarian serous cystadenocarcinoma(18;0.112)			CTTTGTGGTGGATCAAACATC	0.512		NaN											1	0	8.8899e-71	0.01441	9.98331e-71	132	196		Valid		
GLS2	27165	broad.mit.edu	37	12	56865968	56865968	+	Nonsense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:56865968G>C	uc001slj.2	-	16	1802	c.1523C>G	c.(1522-1524)TCA>TGA	p.S508*	GLS2_uc009zos.2_RNA|GLS2_uc001slk.2_Nonsense_Mutation_p.S243*|GLS2_uc009zot.2_Nonsense_Mutation_p.S169*	NM_013267	NP_037399	Q9UI32	GLSL_HUMAN	glutaminase 2 precursor	508					cellular amino acid biosynthetic process|glutamate secretion|glutamine metabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity|protein binding			ovary(1)|central_nervous_system(1)	2					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	ATCCATGGCTGACAAGGCAAA	0.502		NaN											0	0	0	0.01441	0	74	111				
NUP107	57122	broad.mit.edu	37	12	69127366	69127366	+	Nonsense_Mutation	SNP	G	G	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:69127366G>T	uc001suf.2	+	24	2351	c.2236G>T	c.(2236-2238)GAA>TAA	p.E746*	NUP107_uc001sug.2_Nonsense_Mutation_p.E505*|NUP107_uc010stj.1_Nonsense_Mutation_p.E717*	NM_020401	NP_065134	P57740	NU107_HUMAN	nucleoporin 107kDa	746					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			skin(1)	1	Breast(13;6.25e-06)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00694)			TGCTATCCGAGAACATTTGTG	0.398		NaN											1	0	0.00198382	0.001984	0.0020322	7	121				
PPFIA2	8499	broad.mit.edu	37	12	81675058	81675058	+	Missense_Mutation	SNP	T	T	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:81675058T>C	uc001szo.1	-	27	3351	c.3190A>G	c.(3190-3192)AAA>GAA	p.K1064E	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	963										ovary(3)|lung(2)|pancreas(1)	6						TCCACCATTTTTAAATGGACA	0.323		NaN											0	0	0	0.001168	0	6	16				
ACACB	32	broad.mit.edu	37	12	109625935	109625935	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:109625935C>G	uc001tob.2	+	13	2231	c.2112C>G	c.(2110-2112)TTC>TTG	p.F704L	ACACB_uc001toc.2_Missense_Mutation_p.F704L	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	704	Biotin carboxylation.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GGCACTGCTTCTCCTGGGGAG	0.393		NaN											0	0	0	0.012319	0	20	110				
GCN1L1	10985	broad.mit.edu	37	12	120565654	120565654	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:120565654C>T	uc001txo.2	-	58	8028	c.8015G>A	c.(8014-8016)TGA>TAA	p.*2672*		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2672					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCAGGCCTCTCATGTCAGGAT	0.542		NaN											0	0	0	0.008361	0	30	232				
RSRC2	65117	broad.mit.edu	37	12	123001882	123001882	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:123001882G>A	uc001ucr.2	-	5	640	c.494C>T	c.(493-495)TCG>TTG	p.S165L	RSRC2_uc001uco.2_5'UTR|RSRC2_uc001ucp.2_Missense_Mutation_p.S106L|RSRC2_uc001ucq.2_5'UTR|RSRC2_uc001ucs.2_5'UTR|RSRC2_uc001uct.2_Missense_Mutation_p.S117L|RSRC2_uc001ucu.2_Missense_Mutation_p.S165L	NM_023012	NP_075388	Q7L4I2	RSRC2_HUMAN	arginine/serine-rich coiled-coil 2 isoform a	165	Ser-rich.									ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.14e-05)|Epithelial(86;0.000183)|BRCA - Breast invasive adenocarcinoma(302;0.201)		TCTGGATCTCGATTTCTTCCT	0.517		NaN											0	0	0	0.001855	0	13	115				
SNRNP35	11066	broad.mit.edu	37	12	123950235	123950235	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:123950235C>T	uc001ufb.1	+	2	264	c.148C>T	c.(148-150)CTC>TTC	p.L50F	SNRNP35_uc010tar.1_Missense_Mutation_p.L55F|SNRNP35_uc009zxz.2_Missense_Mutation_p.L55F|SNRNP35_uc001ufc.1_Intron	NM_022717	NP_073208	Q16560	U1SBP_HUMAN	small nuclear ribonucleoprotein 35kDa (U11/U12)	50					mRNA processing	U12-type spliceosomal complex	nucleotide binding|RNA binding				0						AGGAGATCCCCTCCTCACCCT	0.557		NaN											0	0	0	0.006122	0	17	89				
DHX37	57647	broad.mit.edu	37	12	125473494	125473494	+	Silent	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr12:125473494G>A	uc001ugy.2	-	1	174	c.75C>T	c.(73-75)CCC>CCT	p.P25P		NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	25							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		GGGGCGGCTCGGGGGGGCCCT	0.711		NaN											0	0	0	0.003755	0	29	34				
CCNA1	8900	broad.mit.edu	37	13	37012218	37012218	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr13:37012218G>A	uc001uvr.3	+	4	909	c.559G>A	c.(559-561)GTA>ATA	p.V187I	CCNA1_uc010teo.1_Missense_Mutation_p.V143I|CCNA1_uc010abq.2_Missense_Mutation_p.V143I|CCNA1_uc010abp.2_Missense_Mutation_p.V143I|CCNA1_uc001uvs.3_Missense_Mutation_p.V186I|CCNA1_uc010abr.2_Intron	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	187					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		CCCTATGCTGGTAGATTCATC	0.383		NaN											0	0	0	0.003755	0	36	53				
OR4K5	79317	broad.mit.edu	37	14	20389081	20389081	+	Missense_Mutation	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr14:20389081C>A	uc010tkw.1	+	1	316	c.316C>A	c.(316-318)CTT>ATT	p.L106I		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTTTATTCACCTTTTTACTGG	0.433		NaN											1	0	1.99824e-07	0.00499	2.10869e-07	18	44				
DHRS4L1	728635	broad.mit.edu	37	14	24520155	24520155	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr14:24520155G>C	uc010alc.2	+	10	824	c.824G>C	c.(823-825)GGA>GCA	p.G275A	DHRS4L1_uc010tnu.1_RNA|LRRC16B_uc001wlj.2_5'Flank	NM_001082488	NP_001075957	P0CG22	DR4L1_HUMAN	dehydrogenase/reductase (SDR family) member 4	275							binding|oxidoreductase activity				0						ATGGTGGGTGGAGGAACCCCG	0.597		NaN											0	0	0	0.006214	0	8	22				
SEC23A	10484	broad.mit.edu	37	14	39545169	39545169	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr14:39545169G>C	uc001wup.1	-	8	1180	c.957C>G	c.(955-957)GAC>GAG	p.D319E	SEC23A_uc010tqa.1_Missense_Mutation_p.D181E|SEC23A_uc010tqb.1_Missense_Mutation_p.D290E|SEC23A_uc010tqc.1_Missense_Mutation_p.D181E	NM_006364	NP_006355	Q15436	SC23A_HUMAN	SEC23-related protein A	319					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|Golgi membrane|smooth endoplasmic reticulum membrane	protein binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5	Hepatocellular(127;0.213)		Lung(238;0.00047)|LUAD - Lung adenocarcinoma(48;0.000565)	GBM - Glioblastoma multiforme(112;0.0151)		ATTTGGCATTGTCTTTGTCAA	0.383		NaN											0	0	0	0.000602	0	5	18				
AHNAK2	113146	broad.mit.edu	37	14	105409421	105409421	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr14:105409421C>T	uc010axc.1	-	7	12487	c.12367G>A	c.(12367-12369)GAC>AAC	p.D4123N	AHNAK2_uc001ypx.2_Missense_Mutation_p.D4023N	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4123						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ACATCCTTGTCGGCCAGGGAC	0.587		NaN											0	0	0	0.01441	0	96	250				
MAGEL2	54551	broad.mit.edu	37	15	23889145	23889145	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr15:23889145G>C	uc001ywj.3	-	1	2031	c.1936C>G	c.(1936-1938)CGC>GGC	p.R646G		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		ACCTATTAGCGGGGAGGGGGC	0.577		NaN											0	0	0	0.00308	0	8	16				
MAGEL2	54551	broad.mit.edu	37	15	23890799	23890799	+	Silent	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr15:23890799G>C	uc001ywj.3	-	1	377	c.282C>G	c.(280-282)CCC>CCG	p.P94P		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		CCGGGGGTCCGGGCTGGGCCT	0.652		NaN											0	0	0	0.000602	0	5	16				
PLA2G4F	255189	broad.mit.edu	37	15	42439886	42439886	+	Silent	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr15:42439886C>A	uc001zoz.2	-	12	1197	c.1134G>T	c.(1132-1134)GGG>GGT	p.G378G	PLA2G4F_uc010bcq.2_5'Flank|PLA2G4F_uc001zoy.2_Silent_p.G10G|PLA2G4F_uc010bcr.2_Silent_p.G129G|PLA2G4F_uc001zpa.2_Silent_p.G129G|PLA2G4F_uc010bcs.2_Silent_p.G165G	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	378	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		GCTCCTGCAACCCTGCCAGGC	0.577		NaN											1	0	1.88708e-17	0.008361	2.08572e-17	30	83				
C15orf43	145645	broad.mit.edu	37	15	45270712	45270712	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr15:45270712G>C	uc001zuk.2	+	7	566	c.549G>C	c.(547-549)AAG>AAC	p.K183N		NM_152448	NP_689661	Q8NHR7	CO043_HUMAN	hypothetical protein LOC145645	183											0		all_cancers(109;3.68e-08)|all_epithelial(112;1.05e-06)|Lung NSC(122;1.42e-05)|all_lung(180;0.000112)|Melanoma(134;0.0192)		all cancers(107;7.64e-17)|GBM - Glioblastoma multiforme(94;2.03e-06)		ATGCCATGAAGAAATTCCTTG	0.294		NaN											0	0	0	0.001984	0	7	20				
DUOX1	53905	broad.mit.edu	37	15	45454121	45454121	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr15:45454121G>C	uc001zus.1	+	31	4388	c.4042G>C	c.(4042-4044)GAG>CAG	p.E1348Q	DUOX1_uc001zut.1_Missense_Mutation_p.E1348Q|DUOX1_uc010bee.1_Missense_Mutation_p.E728Q	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	1348	Cytoplasmic (Potential).|FAD-binding FR-type.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		TCGCCTCAGGGAGATCTACTC	0.617		NaN											0	0	0	0.00308	0	8	22				
PRTG	283659	broad.mit.edu	37	15	55919293	55919293	+	Nonsense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr15:55919293G>C	uc002adg.2	-	17	2888	c.2840C>G	c.(2839-2841)TCA>TGA	p.S947*		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	947					multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		GCCAGTCATTGATTTTTGGTC	0.358		NaN											0	0	0	0.000602	0	5	31				
CLPX	10845	broad.mit.edu	37	15	65447318	65447318	+	Silent	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr15:65447318G>A	uc002aom.2	-	11	1485	c.1413C>T	c.(1411-1413)GAC>GAT	p.D471D	CLPX_uc010uiu.1_RNA	NM_006660	NP_006651	O76031	CLPX_HUMAN	ClpX caseinolytic protease X homolog precursor	471					protein folding|proteolysis involved in cellular protein catabolic process	mitochondrial endopeptidase Clp complex|mitochondrial inner membrane|mitochondrial nucleoid	ATP binding|ATPase activity|metal ion binding|peptidase activator activity|unfolded protein binding				0						TTTCTTCAATGTCTTGGTGAG	0.473		NaN											0	0	0	0.00245	0	15	24				
KIAA1024	23251	broad.mit.edu	37	15	79749968	79749968	+	Silent	SNP	T	T	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr15:79749968T>C	uc002bew.1	+	2	1554	c.1479T>C	c.(1477-1479)TCT>TCC	p.S493S	KIAA1024_uc010unk.1_Silent_p.S493S	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	493						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						TGTGCACCTCTGGTCAGGGCA	0.532		NaN											0	0	0	0.004482	0	8	26				
KIAA1199	57214	broad.mit.edu	37	15	81199027	81199027	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr15:81199027G>C	uc002bfw.1	+	12	1695	c.1435G>C	c.(1435-1437)GGG>CGG	p.G479R	KIAA1199_uc010unn.1_Missense_Mutation_p.G479R	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	479										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CCTGCACATCGGGGAGGAGAT	0.582		NaN											0	0	0	0.004656	0	21	53				
WDR93	56964	broad.mit.edu	37	15	90272286	90272286	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr15:90272286G>A	uc002boj.2	+	10	1186	c.1085G>A	c.(1084-1086)TGC>TAC	p.C362Y	WDR93_uc010bnr.2_Missense_Mutation_p.C362Y|WDR93_uc010upz.1_Missense_Mutation_p.C79Y	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	362					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			CTTCCTAGCTGCCTATTTGCA	0.537		NaN											0	0	0	0.010818	0	29	76				
IQGAP1	8826	broad.mit.edu	37	15	90972827	90972827	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr15:90972827G>A	uc002bpl.1	+	4	420	c.319G>A	c.(319-321)GGC>AGC	p.G107S		NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	107	CH.				energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			CTAGGCGACTGGCCTCCACTT	0.353		NaN											0	0	0	0.00499	0	15	30				
BAIAP3	8938	broad.mit.edu	37	16	1388576	1388576	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr16:1388576G>A	uc002clk.1	+	2	131	c.131G>A	c.(130-132)AGC>AAC	p.S44N	BAIAP3_uc002clj.2_Missense_Mutation_p.S9N|BAIAP3_uc010uuz.1_Missense_Mutation_p.S9N|BAIAP3_uc010uva.1_Missense_Mutation_p.S9N|BAIAP3_uc010uvb.1_Missense_Mutation_p.S44N|BAIAP3_uc010uvc.1_Missense_Mutation_p.S9N	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	44					G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				GACATTAAGAGCAGCGTGCTC	0.672		NaN											0	0	0	0.007291	0	27	5				
ZNF263	10127	broad.mit.edu	37	16	3339613	3339613	+	Silent	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr16:3339613G>A	uc002cuq.2	+	6	1439	c.1107G>A	c.(1105-1107)CCG>CCA	p.P369P	ZNF263_uc010uww.1_Silent_p.P17P|ZNF263_uc002cur.2_Silent_p.P17P	NM_005741	NP_005732	O14978	ZN263_HUMAN	zinc finger protein 263	369					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(3)|ovary(1)	4						TGGGGCGACCGAAGGAACTGC	0.537		NaN											0	0	0	0.007413	0	20	33				
TEKT5	146279	broad.mit.edu	37	16	10775971	10775971	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr16:10775971C>T	uc002czz.1	-	4	814	c.742G>A	c.(742-744)GTG>ATG	p.V248M		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	248					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						CTCTCCAGCACGTGCTGAGCA	0.552		NaN											0	0	0	0.01441	0	70	84				
HEATR3	55027	broad.mit.edu	37	16	50109505	50109505	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr16:50109505G>A	uc002efw.2	+	6	808	c.646G>A	c.(646-648)GAG>AAG	p.E216K	HEATR3_uc002efx.2_Missense_Mutation_p.E130K	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	216							binding			ovary(1)|skin(1)	2						GACAGTGACTGAGGATAACCC	0.383		NaN											0	0	0	0.008871	0	19	34				
DYNC1LI2	1783	broad.mit.edu	37	16	66757722	66757722	+	Missense_Mutation	SNP	T	T	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr16:66757722T>C	uc002eqb.1	-	13	1413	c.1382A>G	c.(1381-1383)CAA>CGA	p.Q461R	DYNC1LI2_uc010vis.1_Missense_Mutation_p.Q384R	NM_006141	NP_006132	O43237	DC1L2_HUMAN	dynein, cytoplasmic, light intermediate	461					transport	centrosome|cytoplasmic dynein complex|microtubule	ATP binding|motor activity			central_nervous_system(3)|skin(1)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0907)|Epithelial(162;0.212)		CACAGTCTTTTGTCCTGAAAA	0.333		NaN											0	0	0	0.003163	0	14	26				
FBXO31	79791	broad.mit.edu	37	16	87364973	87364973	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr16:87364973G>A	uc002fjw.2	-	9	1585	c.1541C>T	c.(1540-1542)GCC>GTC	p.A514V	FBXO31_uc010vot.1_Missense_Mutation_p.A342V|FBXO31_uc002fjv.2_Missense_Mutation_p.A406V	NM_024735	NP_079011	Q5XUX0	FBX31_HUMAN	F-box protein 31	514					cell cycle|cyclin catabolic process|mitotic cell cycle G1/S transition DNA damage checkpoint|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	SCF ubiquitin ligase complex	cyclin binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0272)		CCGGAAGGTGGCCTGGACCCG	0.617		NaN											0	0	0	0.004482	0	8	21				
C16orf55	124045	broad.mit.edu	37	16	89724678	89724678	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr16:89724678C>T	uc002fnw.1	+	2	57	c.57C>T	c.(55-57)TCC>TCT	p.S19S	CHMP1A_uc002fnu.2_5'Flank|CHMP1A_uc002fnv.2_5'Flank|C16orf55_uc002fnx.3_Silent_p.S20S|C16orf55_uc010vpk.1_Silent_p.S20S|C16orf55_uc002fny.1_Intron	NM_153025	NP_694570	Q96N06	CP055_HUMAN	hypothetical protein LOC124045	19											0		all_lung(18;0.000665)|all_hematologic(23;0.0355)		BRCA - Breast invasive adenocarcinoma(80;0.0274)		AGAAGGGATCCACCTATTCAG	0.532		NaN											0	0	0	0.008291	0	10	37				
DNAH9	1770	broad.mit.edu	37	17	11648245	11648245	+	Silent	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr17:11648245G>A	uc002gne.2	+	31	6311	c.6243G>A	c.(6241-6243)AAG>AAA	p.K2081K	DNAH9_uc010coo.2_Silent_p.K1375K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2081					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACATCCCCAAGATTGTGACTG	0.597		NaN											0	0	0	0.004482	0	8	6				
KIAA0100	9703	broad.mit.edu	37	17	26945872	26945872	+	Silent	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr17:26945872C>G	uc002hbu.2	-	32	5859	c.5760G>C	c.(5758-5760)CTG>CTC	p.L1920L	KIAA0100_uc002hbt.2_Silent_p.L249L	NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	1920						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					CTTCCTCTGTCAGGCGCCACC	0.512		NaN											0	0	0	0.001984	0	7	114				
ACBD4	79777	broad.mit.edu	37	17	43215296	43215296	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr17:43215296G>A	uc002iid.2	+	8	924	c.580G>A	c.(580-582)GGG>AGG	p.G194R	ACBD4_uc010wjj.1_Missense_Mutation_p.G210R|ACBD4_uc002iie.2_Missense_Mutation_p.G210R|ACBD4_uc002iif.2_Missense_Mutation_p.R197Q|ACBD4_uc002iic.2_Missense_Mutation_p.R197Q|ACBD4_uc010dae.2_Missense_Mutation_p.G132R	NM_001135707	NP_001129179	Q8NC06	ACBD4_HUMAN	acyl-Coenzyme A binding domain containing 4	194							fatty-acyl-CoA binding			ovary(1)|kidney(1)	2						ACAGAGCAGCGGGCAGCATCT	0.607		NaN											0	0	0	0.001984	0	6	51				
SLC16A6	9120	broad.mit.edu	37	17	66270122	66270122	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr17:66270122C>T	uc002jgz.1	-	3	510	c.322G>A	c.(322-324)GCC>ACC	p.A108T	ARSG_uc002jhc.2_Intron|SLC16A6_uc002jha.1_Missense_Mutation_p.A108T	NM_004694	NP_004685	O15403	MOT7_HUMAN	solute carrier family 16, member 6	108	Helical; (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity				0	all_cancers(12;1.24e-09)		BRCA - Breast invasive adenocarcinoma(8;3.17e-08)|LUSC - Lung squamous cell carcinoma(166;0.24)		Pyruvic acid(DB00119)	GAGAAGGAGGCGGCCACCATC	0.542		NaN											0	0	0	0.004482	0	9	41				
SOX9	6662	broad.mit.edu	37	17	70119895	70119895	+	Silent	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr17:70119895G>A	uc002jiw.2	+	3	1269	c.897G>A	c.(895-897)CCG>CCA	p.P299P	uc002jiv.2_5'Flank	NM_000346	NP_000337	P48436	SOX9_HUMAN	transcription factor SOX9	299					cAMP-mediated signaling|negative regulation of transcription, DNA-dependent|positive regulation of branching involved in ureteric bud morphogenesis|protein complex assembly|renal vesicle induction	nucleus|protein complex	core promoter sequence-specific DNA binding|enhancer binding|protein kinase A catalytic subunit binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription				0		Colorectal(1115;0.245)	STAD - Stomach adenocarcinoma(260;0.119)			AGTACCTGCCGCCCAACGGCC	0.682		NaN											0	0	0	0.003163	0	13	61				
GALR2	8811	broad.mit.edu	37	17	74073059	74073059	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr17:74073059G>A	uc002jqm.1	+	2	792	c.711G>A	c.(709-711)ATG>ATA	p.M237I	ZACN_uc002jqn.2_5'Flank|ZACN_uc002jqo.2_5'Flank|ZACN_uc010dgu.2_5'Flank	NM_003857	NP_003848	O43603	GALR2_HUMAN	galanin receptor 2	237	Cytoplasmic (Potential).				digestion|elevation of cytosolic calcium ion concentration|feeding behavior|learning or memory|muscle contraction	integral to membrane|plasma membrane	galanin receptor activity				0						TGACACGCATGATCCTCATCG	0.706		NaN											0	0	0	0.005443	0	26	20				
DENND1C	79958	broad.mit.edu	37	19	6468350	6468350	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr19:6468350C>G	uc002mfe.2	-	22	1778	c.1686G>C	c.(1684-1686)GAG>GAC	p.E562D	DENND1C_uc002mfb.2_Missense_Mutation_p.E112D|DENND1C_uc002mfc.2_Missense_Mutation_p.E112D|DENND1C_uc002mfd.2_Missense_Mutation_p.E112D|DENND1C_uc010xje.1_Missense_Mutation_p.E518D	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	562						clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						TGTCCAGAATCTCGCTCAACA	0.577		NaN											0	0	0	0.00308	0	7	14				
TYK2	7297	broad.mit.edu	37	19	10477209	10477209	+	Silent	SNP	C	C	T	rs55988893		TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr19:10477209C>T	uc002moc.3	-	6	891	c.513G>A	c.(511-513)TCG>TCA	p.S171S	TYK2_uc010dxe.2_5'UTR|TYK2_uc002mod.2_Silent_p.S171S	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	171	FERM.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			CCTCCTCGGTCGACAGCTCCC	0.557		NaN											0	0	0	0.01441	0	40	141				
S1PR5	53637	broad.mit.edu	37	19	10624779	10624779	+	Silent	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr19:10624779G>A	uc002mot.1	-	2	966	c.909C>T	c.(907-909)CCC>CCT	p.P303P	S1PR5_uc002mou.1_Silent_p.P303P	NM_030760	NP_110387	Q9H228	S1PR5_HUMAN	endothelial differentiation, sphingolipid	303	Helical; Name=7; (By similarity).					integral to membrane|plasma membrane	lysosphingolipid and lysophosphatidic acid receptor activity			central_nervous_system(1)|pancreas(1)	2						TGTAGATGATGGGGTTCAGAA	0.672		NaN											0	0	0	0.010729	0	11	35				
CARM1	10498	broad.mit.edu	37	19	11031350	11031350	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr19:11031350C>T	uc002mpz.2	+	12	1476	c.1350C>T	c.(1348-1350)ATC>ATT	p.I450I	CARM1_uc010dxn.2_RNA|CARM1_uc002mqa.2_Silent_p.I233I	NM_199141	NP_954592	Q86X55	CARM1_HUMAN	coactivator-associated arginine	450					cellular lipid metabolic process|histone H3-R2 methylation|interspecies interaction between organisms|pathogenesis|positive regulation of fat cell differentiation|regulation of estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleoplasm	beta-catenin binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-R17 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein-arginine omega-N asymmetric methyltransferase activity|transcription regulatory region DNA binding				0						GCTACGACATCAGTATTGTGG	0.622		NaN											0	0	0	0.010504	0	19	62				
RGL3	57139	broad.mit.edu	37	19	11526625	11526625	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr19:11526625G>A	uc002mrp.2	-	5	689	c.625C>T	c.(625-627)CAG>TAG	p.Q209*	RGL3_uc002mrn.2_5'UTR|RGL3_uc002mrm.2_5'UTR|RGL3_uc002mro.2_Nonsense_Mutation_p.Q209*	NM_001035223	NP_001030300	Q3MIN7	RGL3_HUMAN	ral guanine nucleotide dissociation	209					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular				ovary(1)	1						GTCCACACCTGAGGCGGCTCC	0.572		NaN											0	0	0	0.01441	0	116	162				
ZNF20	7568	broad.mit.edu	37	19	12243475	12243475	+	Missense_Mutation	SNP	T	T	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr19:12243475T>C	uc002mtf.1	-	4	1669	c.1526A>G	c.(1525-1527)AAG>AGG	p.K509R	ZNF20_uc002mte.1_Missense_Mutation_p.K474R|ZNF20_uc002mtg.1_Missense_Mutation_p.K509R	NM_021143	NP_066966	P17024	ZNF20_HUMAN	zinc finger protein 20	509	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCCACATTGCTTGCATTGATA	0.403		NaN											0	0	0	0.01441	0	98	121				
COMP	1311	broad.mit.edu	37	19	18896513	18896513	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr19:18896513C>T	uc002nke.2	-	14	1674	c.1638G>A	c.(1636-1638)CAG>CAA	p.Q546Q	COMP_uc002nkd.2_Silent_p.Q513Q|COMP_uc010xqj.1_Silent_p.Q493Q	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	546	Mediates cell survival and induction of the IAP family of survival proteins.|TSP C-terminal.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						TGGGGTCAATCTGCGCGTCAC	0.622		NaN											0	0	0	0.006214	0	9	58				
PRX	57716	broad.mit.edu	37	19	40909734	40909734	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr19:40909734C>T	uc002onr.2	-	5	332	c.63G>A	c.(61-63)GTG>GTA	p.V21V	PRX_uc002onq.2_5'UTR|PRX_uc002ons.2_Silent_p.V21V	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	21	PDZ.				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CCTCCGTCTCCACGATAATTT	0.682		NaN											0	0	0	0.004672	0	3	11				
KLK15	55554	broad.mit.edu	37	19	51329977	51329977	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr19:51329977C>G	uc002ptl.2	-	4	549	c.518G>C	c.(517-519)AGC>ACC	p.S173T	KLK1_uc002ptk.1_5'Flank|KLK1_uc010ycg.1_5'Flank|KLK15_uc002ptm.2_Intron|KLK15_uc002ptn.2_Intron|KLK15_uc002pto.2_Missense_Mutation_p.S172T|KLK15_uc010ych.1_RNA|KLK15_uc010yci.1_Intron|KLK15_uc010eod.2_Intron	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	173	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		CGAGATAATGCTGATGTTGGC	0.562		NaN											0	0	0	0.005443	0	25	145				
NLRP7	199713	broad.mit.edu	37	19	55450851	55450851	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr19:55450851G>A	uc002qih.3	-	4	1412	c.1336C>T	c.(1336-1338)CGT>TGT	p.R446C	NLRP7_uc002qig.3_Missense_Mutation_p.R446C|NLRP7_uc002qii.3_Missense_Mutation_p.R446C|NLRP7_uc010esk.2_Missense_Mutation_p.R446C|NLRP7_uc010esl.2_Missense_Mutation_p.R474C	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	446	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		AGGAACAGACGGAGGTCGGAC	0.632		NaN											0	0	0	0.012319	0	20	57				
NLRP13	126204	broad.mit.edu	37	19	56424636	56424636	+	Missense_Mutation	SNP	T	T	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr19:56424636T>A	uc010ygg.1	-	5	572	c.547A>T	c.(547-549)AAC>TAC	p.N183Y		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	183							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GCCTTCATGTTCTCTCTGTAT	0.418		NaN											0	0	0	0.003163	0	13	84				
SRBD1	55133	broad.mit.edu	37	2	45789849	45789849	+	Missense_Mutation	SNP	T	T	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr2:45789849T>A	uc002rus.2	-	10	1428	c.1352A>T	c.(1351-1353)AAG>ATG	p.K451M	SRBD1_uc010yoc.1_Translation_Start_Site	NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	451					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			AATATTGACCTTAACCGTCAG	0.343		NaN											0	0	0	0.00499	0	16	85				
FAM123C	205147	broad.mit.edu	37	2	131520501	131520501	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr2:131520501G>A	uc002trw.2	+	2	1046	c.856G>A	c.(856-858)GGC>AGC	p.G286S	FAM123C_uc010fmv.2_Missense_Mutation_p.G286S|FAM123C_uc010fms.1_Missense_Mutation_p.G286S|FAM123C_uc010fmt.1_Missense_Mutation_p.G286S|FAM123C_uc010fmu.1_Missense_Mutation_p.G286S	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	286										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GGTTCCCAGGGGCCCTCTCCA	0.637		NaN											0	0	0	0.001855	0	13	40				
PDE11A	50940	broad.mit.edu	37	2	178936789	178936789	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr2:178936789C>G	uc002ulq.2	-	1	694	c.376G>C	c.(376-378)GCC>CCC	p.A126P	PDE11A_uc002ulr.2_Intron|PDE11A_uc002ult.1_Intron	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	126					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			TTGGAGCGGGCAAAACTCTTC	0.612		NaN							Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				0	0	0	0.000602	0	4	79				
TTN	7273	broad.mit.edu	37	2	179457374	179457374	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr2:179457374C>T	uc010zfg.1	-	250	51878	c.51654G>A	c.(51652-51654)TTG>TTA	p.L17218L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.L10913L|TTN_uc010zfi.1_Silent_p.L10846L|TTN_uc010zfj.1_Silent_p.L10721L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18145							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATCAAGAATCAACTCAGGGG	0.373		NaN											0	0	0	0.001168	0	6	8				
ZNF804A	91752	broad.mit.edu	37	2	185803315	185803315	+	Silent	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr2:185803315G>A	uc002uph.2	+	4	3786	c.3192G>A	c.(3190-3192)AAG>AAA	p.K1064K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1064						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGGCCAACAAGGTTAAATTTA	0.468		NaN											0	0	0	0.004007	0	16	31				
ESPNL	339768	broad.mit.edu	37	2	239013413	239013413	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr2:239013413G>C	uc002vxq.3	+	3	712	c.602G>C	c.(601-603)CGT>CCT	p.R201P		NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	201										pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		GTGCACCTTCGTGCTCTCGAT	0.677		NaN											0	0	0	0.001984	0	7	7				
PASK	23178	broad.mit.edu	37	2	242046892	242046892	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr2:242046892C>T	uc002wao.1	-	17	3782	c.3690G>A	c.(3688-3690)GGG>GGA	p.G1230G	PASK_uc010zol.1_Silent_p.G1044G|PASK_uc010zom.1_Silent_p.G1195G|PASK_uc010fzl.1_Silent_p.G1237G|PASK_uc010zon.1_Silent_p.G1011G	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	1230	Protein kinase.				regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		GCTGCAGCAGCCCAGACACAA	0.542		NaN											0	0	0	0.004656	0	25	54				
HCK	3055	broad.mit.edu	37	20	30674544	30674544	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr20:30674544C>T	uc002wxh.2	+	9	1120	c.949C>T	c.(949-951)CTG>TTG	p.L317L	HCK_uc010gdy.2_Silent_p.L296L|HCK_uc002wxi.2_Silent_p.L295L	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	317	Protein kinase.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GCATGACAAGCTGGTCAAACT	0.582		NaN											0	0	0	0.01441	0	75	15				
GGT7	2686	broad.mit.edu	37	20	33442618	33442618	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr20:33442618G>A	uc002xay.2	-	9	1254	c.1211C>T	c.(1210-1212)GCT>GTT	p.A404V	GGT7_uc002xaz.1_Missense_Mutation_p.A421V	NM_178026	NP_821158	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	404	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(1)	1						CCAGTGAAGAGCCTGTTCTCG	0.567		NaN											0	0	0	0.00308	0	7	94				
SERINC3	10955	broad.mit.edu	37	20	43133481	43133481	+	Missense_Mutation	SNP	T	T	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr20:43133481T>C	uc002xme.2	-	7	969	c.835A>G	c.(835-837)ACT>GCT	p.T279A	SERINC3_uc002xmf.1_Missense_Mutation_p.T279A|SERINC3_uc010ggs.1_Missense_Mutation_p.T272A|SERINC3_uc010zwp.1_Missense_Mutation_p.T224A	NM_198941	NP_945179	Q13530	SERC3_HUMAN	tumor differentially expressed protein 1	279	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein binding			skin(3)	3		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.000291)|COAD - Colon adenocarcinoma(18;0.00189)			AGGTACATAGTGTAGAGGGTG	0.478		NaN											0	0	0	0.00308	0	7	49				
MATN4	8785	broad.mit.edu	37	20	43929794	43929794	+	Silent	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr20:43929794C>A	uc002xnn.2	-	5	1024	c.837G>T	c.(835-837)CGG>CGT	p.R279R	MATN4_uc002xno.2_Silent_p.R238R|MATN4_uc002xnp.2_Intron|MATN4_uc010zwr.1_Silent_p.R227R|MATN4_uc002xnr.1_Silent_p.R279R	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	320	EGF-like 3.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				TGCAGTGGCACCGTGGCCCAC	0.557		NaN									OREG0025977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	1	0	1.49906e-05	0.00245	1.55075e-05	14	94				
CEBPB	1051	broad.mit.edu	37	20	48807640	48807640	+	Missense_Mutation	SNP	A	A	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr20:48807640A>G	uc002xvi.1	+	1	265	c.70A>G	c.(70-72)ATG>GTG	p.M24V	CEBPB_uc002xvh.2_RNA	NM_005194	NP_005185	P17676	CEBPB_HUMAN	CCAAT/enhancer binding protein beta	24	Required for Lys-174 sumoylation.				acute-phase response|immune response		sequence-specific enhancer binding RNA polymerase II transcription factor activity				0			BRCA - Breast invasive adenocarcinoma(9;5.72e-08)|STAD - Stomach adenocarcinoma(23;0.19)			CTTTAAATCCATGGAAGTGGC	0.537		NaN											0	0	0	0.009096	0	3	26				
LSM14B	149986	broad.mit.edu	37	20	60706547	60706547	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr20:60706547C>T	uc010gjy.1	+	7	1177	c.971C>T	c.(970-972)TCT>TTT	p.S324F	LSM14B_uc002ybv.2_Missense_Mutation_p.S298F|LSM14B_uc010zzz.1_Missense_Mutation_p.S244F	NM_144703	NP_653304	Q9BX40	LS14B_HUMAN	LSM14 homolog B	324	FFD box.				multicellular organismal development|regulation of translation	ribonucleoprotein complex					0	Breast(26;3.97e-09)		BRCA - Breast invasive adenocarcinoma(19;1.28e-07)			AACATCTCTTCTGAACTCAAG	0.552		NaN											0	0	0	0.009096	0	3	39				
COL9A3	1299	broad.mit.edu	37	20	61458604	61458604	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr20:61458604C>T	uc002ydm.2	+	16	807	c.804C>T	c.(802-804)GGC>GGT	p.G268G		NM_001853	NP_001844	Q14050	CO9A3_HUMAN	alpha 3 type IX collagen precursor	268	Triple-helical region 3 (COL3).				axon guidance	collagen type IX					0	Breast(26;5.68e-08)					GTGACCGAGGCGAGAGGGGCC	0.632		NaN											0	0	0	0.004482	0	8	56				
RWDD2B	10069	broad.mit.edu	37	21	30380277	30380277	+	Missense_Mutation	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr21:30380277C>A	uc002yms.2	-	4	617	c.530G>T	c.(529-531)GGA>GTA	p.G177V	RWDD2B_uc002ymt.2_Missense_Mutation_p.G148V|RWDD2B_uc002ymu.2_RNA|RWDD2B_uc002ymv.2_Missense_Mutation_p.G97V	NM_016940	NP_058636	P57060	RWD2B_HUMAN	RWD domain containing 2B	177											0						GACTGTGCTTCCTGTGGTGGG	0.443		NaN											1	0	2.21704e-12	0.00278	2.41232e-12	23	64				
KRTAP10-2	386679	broad.mit.edu	37	21	45971299	45971299	+	Missense_Mutation	SNP	T	T	C	rs233240	by1000genomes	TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr21:45971299T>C	uc002zfi.1	-	1	90	c.43A>G	c.(43-45)AAC>GAC	p.N15D	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198693	NP_941966	P60368	KR102_HUMAN	keratin associated protein 10-2	15						keratin filament		p.N15D(1)		large_intestine(1)	1						TGCCAGGAGTTGGTGCAGGCG	0.597		NaN											0	0	0	0.001168	0	5	88				
ITGB2	3689	broad.mit.edu	37	21	46314945	46314945	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr21:46314945C>T	uc002zgd.2	-	8	1068	c.1024G>A	c.(1024-1026)GTG>ATG	p.V342M	ITGB2_uc002zge.2_Missense_Mutation_p.V342M|ITGB2_uc002zgf.3_Missense_Mutation_p.V342M|ITGB2_uc011afl.1_Missense_Mutation_p.V264M|ITGB2_uc010gpw.2_Missense_Mutation_p.V285M|ITGB2_uc002zgg.2_Missense_Mutation_p.V342M	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	342	Extracellular (Potential).|VWFA.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	AGCTCCCCCACGGCTGACTTG	0.577		NaN											0	0	0	0.006122	0	18	26				
SNAP29	9342	broad.mit.edu	37	22	21224644	21224644	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr22:21224644G>C	uc011ahw.1	+	2	364	c.257G>C	c.(256-258)GGA>GCA	p.G86A		NM_004782	NP_004773	O95721	SNP29_HUMAN	synaptosomal-associated protein 29	86	Potential.				cellular membrane fusion|exocytosis|protein transport|vesicle targeting	cell junction|cytoplasm|nucleus|synapse|synaptosome	SNAP receptor activity				0	all_cancers(11;2.77e-25)|all_epithelial(7;8.92e-24)|Lung NSC(8;1.49e-15)|all_lung(8;2.54e-14)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000592)|Lung(15;0.0117)			CGTCAGCGAGGAGTCCTGGAG	0.557		NaN											0	0	0	0.008871	0	20	102				
SEC14L3	266629	broad.mit.edu	37	22	30858094	30858094	+	Silent	SNP	C	C	T	rs146711095		TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr22:30858094C>T	uc003ahy.2	-	9	839	c.750G>A	c.(748-750)GGG>GGA	p.G250G	SEC14L3_uc003ahz.2_Silent_p.G173G|SEC14L3_uc003aia.2_Silent_p.G191G|SEC14L3_uc003aib.2_Silent_p.G191G	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	250						integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	ATTTGGGGTTCCCATCTGGGT	0.483		NaN											0	0	0	0.000602	0	5	34				
BRPF1	7862	broad.mit.edu	37	3	9781381	9781381	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:9781381G>A	uc003bse.2	+	3	1697	c.1298G>A	c.(1297-1299)GGC>GAC	p.G433D	BRPF1_uc003bsf.2_Missense_Mutation_p.G433D|BRPF1_uc003bsg.2_Missense_Mutation_p.G433D|BRPF1_uc011ati.1_Missense_Mutation_p.G433D	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	433					histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					GGCGCCAACGGCACCTCTTTC	0.567		NaN											0	0	0	0.000602	0	5	42				
PLCL2	23228	broad.mit.edu	37	3	17052785	17052785	+	Silent	SNP	T	T	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:17052785T>C	uc011awc.1	+	5	2028	c.1923T>C	c.(1921-1923)AAT>AAC	p.N641N	PLCL2_uc011awd.1_Silent_p.N523N	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	649	PI-PLC Y-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						GTTCCTTTAATGAAGTGCTTG	0.413		NaN											0	0	0	0.00245	0	11	54				
CTNNB1	1499	broad.mit.edu	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	C	rs28931588		TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08			G	C	G	G		Valid	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:41266097G>C	uc010hia.1	+	4	250	c.94G>C	c.(94-96)GAC>CAC	p.D32H	CTNNB1_uc003ckp.2_Missense_Mutation_p.D32H|CTNNB1_uc003ckq.2_Missense_Mutation_p.D32H|CTNNB1_uc003ckr.2_Missense_Mutation_p.D32H|CTNNB1_uc011azf.1_Missense_Mutation_p.D25H|CTNNB1_uc011azg.1_Intron|uc010hib.1_RNA	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	32			Missing (in hepatocellular carcinoma).|D -> A (in hepatocellular carcinoma).|D -> G (in PTR and hepatocellular carcinoma).		adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding	p.D32Y(110)|p.A5_A80del(63)|p.D32N(58)|p.D32G(53)|p.D32H(37)|p.D32V(20)|p.D32A(12)|p.H24_S47del(9)|p.A5_A80>D(7)|p.A5_Q143del(7)|p.WQQQSYLD25?(5)|p.Q28_H134del(5)|p.W25_D32del(4)|p.W25_I140del(4)|p.S23_S33del(3)|p.V22_G38del(3)|p.T3_A126del(2)|p.M5_N141>D(2)|p.D32E(2)|p.D32_S47del(2)|p.W25_H36del(2)|p.Y30_S33del(2)|p.V22_S33del(2)|p.V22_L139>V(2)|p.A5_Y142>D(2)|p.A5fs*7(2)|p.?(2)|p.L10_N141del(2)|p.D6_A43del(1)|p.E9_S47del(1)|p.Q28_Q61del(1)|p.A20_R151del(1)|p.A20_N141del(1)|p.D11_Y142>H(1)|p.H24_G38del(1)|p.S29_H36del(1)|p.Y30_A97del(1)|p.A20_A80del(1)|p.Q28_A43del(1)|p.E15_I140>V(1)|p.D17_P128del(1)|p.H24_M131del(1)|p.L7_I140del(1)|p.K19_Y142>V(1)|p.A20_L148del(1)|p.V22_A80del(1)|p.W25_I35del(1)|p.V22_G80>NNNNN(1)|p.A5_I35del(1)|p.A20_Q143del(1)|p.A13_R151del(1)|p.D32del(1)|p.S23_I140del(1)|p.M1_A87del(1)|p.W25_S33del(1)|p.V22_T102del(1)|p.S23_A39del(1)|p.A21_A80del(1)|p.D6_I140del(1)|p.Q28_I140del(1)|p.E9_A80del(1)|p.M14_S45del(1)|p.M8_G50del(1)|p.A5_G80>(1)|p.D32_H36>D(1)|p.P16_K133del(1)|p.A5_T59del(1)|p.A20_I35del(1)|p.M1_V173del(1)|p.A5_R90del(1)|p.V22_Y64del(1)|p.M8_A80del(1)|p.E9_I140del(1)|p.D32_S33insS(1)|p.Y30_T40del(1)|p.M1_T42del(1)|p.A5_Q143>E(1)|p.A5_Q72del(1)|p.Q28_D32>H(1)|p.Y30_A80del(1)|p.D32fs*9(1)|p.D6_K133del(1)|p.A5_T42del(1)|p.A5_D144>D(1)|p.A5_T40del(1)|p.D17_A126del(1)|p.A5_E54del(1)|p.S23_I35del(1)|p.V22_S71>A(1)|p.W25_A80del(1)|p.A20_Q72del(1)|p.A20_S111del(1)|p.D32_H36del(1)	CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	GTCTTACCTGGACTCTGGAAT	0.478	D32N(KE39_STOMACH)	15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of				0	0	0	0.001168	0	5	26		Valid		
NKTR	4820	broad.mit.edu	37	3	42678866	42678866	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:42678866C>T	uc003clo.2	+	13	1817	c.1670C>T	c.(1669-1671)TCT>TTT	p.S557F	NKTR_uc003clm.1_Missense_Mutation_p.S304F|NKTR_uc003clp.2_Missense_Mutation_p.S304F|NKTR_uc011azp.1_Intron|NKTR_uc003clq.1_Missense_Mutation_p.S447F|NKTR_uc003clr.1_Missense_Mutation_p.S304F|NKTR_uc003cls.2_Missense_Mutation_p.S257F	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	557	Arg/Ser-rich.				protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		AGTTCCAAGTCTGGGCACCGA	0.413		NaN											0	0	0	0.013537	0	12	57				
CYP8B1	1582	broad.mit.edu	37	3	42917227	42917227	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:42917227G>A	uc003cmh.2	-	1	407	c.82C>T	c.(82-84)CGC>TGC	p.R28C	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.R28C	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	28					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		CATGGCCTGCGTTGTCGGAGC	0.582		NaN											0	0	0	0.006214	0	9	64				
KIF15	56992	broad.mit.edu	37	3	44867652	44867652	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:44867652G>C	uc003cnx.3	+	21	2820	c.2671G>C	c.(2671-2673)GAA>CAA	p.E891Q	KIF15_uc010hiq.2_Missense_Mutation_p.E794Q|KIF15_uc010hir.2_5'UTR	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	891	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		CTTCAAAAAAGAAAATGAAAC	0.259		NaN											0	0	0	0.004656	0	26	42				
GNAT1	2779	broad.mit.edu	37	3	50231561	50231561	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:50231561G>C	uc003cym.2	+	6	731	c.615G>C	c.(613-615)AAG>AAC	p.K205N	GNAT1_uc003cyl.2_Missense_Mutation_p.K205N	NM_144499	NP_653082	P11488	GNAT1_HUMAN	rod-type transducin alpha subunit	205					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|negative regulation of cyclic-nucleotide phosphodiesterase activity|rhodopsin mediated phototransduction|sensory perception of umami taste	heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment membrane	acyl binding|G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GDP binding|GTP binding|GTPase activity|protein kinase binding|signal transducer activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		CGGAGCGCAAGAAGTGGATCC	0.667		NaN											0	0	0	0.004007	0	14	16				
BAP1	8314	broad.mit.edu	37	3	52436687	52436687	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:52436687C>G	uc003ddx.2	-	16	2102	c.1987G>C	c.(1987-1989)GAT>CAT	p.D663H	BAP1_uc003ddw.2_RNA|BAP1_uc010hmg.2_RNA|BAP1_uc010hmh.2_RNA	NM_004656	NP_004647	Q92560	BAP1_HUMAN	BRCA1 associated protein-1	663	Interaction with BRCA1.				monoubiquitinated histone H2A deubiquitination|negative regulation of cell proliferation|protein K48-linked deubiquitination|regulation of cell cycle|regulation of cell growth|ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|PR-DUB complex	chromatin binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			pleura(32)|eye(28)|lung(2)|ovary(2)|breast(1)	65				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)		CTCTGGTCATCAATCTGTAGG	0.527		NaN	N|Mis|F|S|O		uveal melanoma|breast|NSCLC								0	0	0	0.012213	0	32	3				
BAP1	8314	broad.mit.edu	37	3	52436810	52436810	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:52436810C>G	uc003ddx.2	-	15	2083	c.1968G>C	c.(1966-1968)AAG>AAC	p.K656N	BAP1_uc003ddw.2_RNA|BAP1_uc010hmg.2_RNA|BAP1_uc010hmh.2_RNA	NM_004656	NP_004647	Q92560	BAP1_HUMAN	BRCA1 associated protein-1	656	Potential.|Interaction with BRCA1.			KRKKFK->AAAAAA: Does not affect nuclear localization.	monoubiquitinated histone H2A deubiquitination|negative regulation of cell proliferation|protein K48-linked deubiquitination|regulation of cell cycle|regulation of cell growth|ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|PR-DUB complex	chromatin binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			pleura(32)|eye(28)|lung(2)|ovary(2)|breast(1)	65				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)		ACTTCTTCCTCTTCTCTACCT	0.557		NaN	N|Mis|F|S|O		uveal melanoma|breast|NSCLC								0	0	0	0.01441	0	52	13				
ADAMTS9	56999	broad.mit.edu	37	3	64666970	64666970	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:64666970C>T	uc003dmg.2	-	3	618	c.586G>A	c.(586-588)GAT>AAT	p.D196N	ADAMTS9_uc011bfo.1_Missense_Mutation_p.D196N|ADAMTS9_uc003dmh.1_Missense_Mutation_p.D25N|ADAMTS9_uc003dmk.1_Missense_Mutation_p.D196N	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	196					glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TCCTCTTCATCTTCTTGTTCA	0.468		NaN											0	0	0	0.014323	0	24	6				
IMPG2	50939	broad.mit.edu	37	3	100963595	100963595	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:100963595G>C	uc003duq.1	-	13	1783	c.1580C>G	c.(1579-1581)TCT>TGT	p.S527C	IMPG2_uc011bhe.1_Missense_Mutation_p.S390C	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	527	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						TGAATCAATAGAAAGAAAATC	0.343		NaN											0	0	0	0.000602	0	5	14				
MYLK	4638	broad.mit.edu	37	3	123383093	123383093	+	Nonsense_Mutation	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:123383093C>A	uc003ego.2	-	23	4126	c.3844G>T	c.(3844-3846)GAG>TAG	p.E1282*	MYLK_uc010hrr.2_5'UTR|MYLK_uc011bjv.1_Nonsense_Mutation_p.E82*|MYLK_uc011bjw.1_Nonsense_Mutation_p.E1282*|MYLK_uc003egp.2_Nonsense_Mutation_p.E1213*|MYLK_uc003egq.2_Nonsense_Mutation_p.E1282*|MYLK_uc003egr.2_Nonsense_Mutation_p.E1213*|MYLK_uc003egs.2_Nonsense_Mutation_p.E1106*	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1282	Actin-binding (calcium/calmodulin- insensitive) (By similarity).|Ig-like C2-type 8.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TTCATGTGCTCGCTTTCCTGG	0.617		NaN											1	0	3.85864e-22	0.00278	4.28738e-22	25	123				
CDV3	55573	broad.mit.edu	37	3	133293897	133293897	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:133293897G>C	uc003epq.2	+	2	710	c.255G>C	c.(253-255)TGG>TGC	p.W85C	CDV3_uc003epp.3_Missense_Mutation_p.W85C|CDV3_uc003epr.2_5'UTR	NM_017548	NP_060018	Q9UKY7	CDV3_HUMAN	carnitine deficiency-associated gene expressed	85					cell proliferation	cytoplasm					0						AAGATGAATGGAAAGAATTGG	0.368		NaN											0	0	0	0.003954	0	23	46				
CDV3	55573	broad.mit.edu	37	3	133293922	133293922	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:133293922G>C	uc003epq.2	+	2	735	c.280G>C	c.(280-282)GAT>CAT	p.D94H	CDV3_uc003epp.3_Missense_Mutation_p.D94H|CDV3_uc003epr.2_5'UTR	NM_017548	NP_060018	Q9UKY7	CDV3_HUMAN	carnitine deficiency-associated gene expressed	94					cell proliferation	cytoplasm					0						AAAAGAGGTTGATTACAGCGG	0.358		NaN											0	0	0	0.008361	0	27	41				
HPS3	84343	broad.mit.edu	37	3	148847538	148847538	+	Missense_Mutation	SNP	T	T	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr3:148847538T>C	uc003ewu.1	+	1	168	c.28T>C	c.(28-30)TTC>CTC	p.F10L	HPS3_uc003ewt.1_Missense_Mutation_p.F10L|HPS3_uc011bnq.1_Missense_Mutation_p.F10L	NM_032383	NP_115759	Q969F9	HPS3_HUMAN	Hermansky-Pudlak syndrome 3 protein	10						cytoplasm				ovary(5)|large_intestine(1)	6			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			CCTGCACCCGTTCGGGTCGCA	0.721		NaN							Hermansky-Pudlak_syndrome				0	0	0	0.006214	0	7	26				
PRKG2	5593	broad.mit.edu	37	4	82027076	82027076	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr4:82027076C>T	uc003hmh.2	-	15	1968	c.1954G>A	c.(1954-1956)GGG>AGG	p.G652R	PRKG2_uc011ccf.1_Missense_Mutation_p.G232R|PRKG2_uc011ccg.1_Missense_Mutation_p.G232R|PRKG2_uc011cch.1_Missense_Mutation_p.G623R	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	652	Protein kinase.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						TGGTCAACCCCAGAAAAGGGT	0.358		NaN											0	0	0	0.001168	0	5	15				
COQ2	27235	broad.mit.edu	37	4	84193256	84193256	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr4:84193256C>T	uc003hog.2	-	4	659	c.651G>A	c.(649-651)TGG>TGA	p.W217*	COQ2_uc011ccp.1_RNA|COQ2_uc003hof.2_RNA|COQ2_uc003hoh.1_Nonsense_Mutation_p.W217*	NM_015697	NP_056512	Q96H96	COQ2_HUMAN	para-hydroxybenzoate-polyprenyltransferase,	204	Helical; (Potential).				glycerol metabolic process|isoprenoid biosynthetic process|ubiquinone biosynthetic process	mitochondrial membrane	4-hydroxybenzoate decaprenyltransferase activity|4-hydroxybenzoate nonaprenyltransferase activity			ovary(1)|central_nervous_system(1)	2		Hepatocellular(203;0.114)				CTAGTTGAGGCCAGTATGAAA	0.358		NaN											0	0	0	0.00308	0	6	7				
SPARCL1	8404	broad.mit.edu	37	4	88414989	88414989	+	Silent	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr4:88414989G>A	uc010ikm.2	-	5	1535	c.963C>T	c.(961-963)CTC>CTT	p.L321L	SPARCL1_uc011cdc.1_Silent_p.L196L|SPARCL1_uc003hqs.3_Silent_p.L321L|SPARCL1_uc011cdd.1_Silent_p.L196L|SPARCL1_uc003hqt.2_Silent_p.L321L	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	321					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		TAGGTTCCATGAGCAGAGCCT	0.408		NaN											0	0	0	0.00278	0	22	101				
CTSO	1519	broad.mit.edu	37	4	156850813	156850813	+	Missense_Mutation	SNP	G	G	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr4:156850813G>T	uc003ipg.2	-	6	768	c.719C>A	c.(718-720)CCT>CAT	p.P240H		NM_001334	NP_001325	P43234	CATO_HUMAN	cathepsin O preproprotein	240					proteolysis	lysosome	cysteine-type endopeptidase activity				0	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.05)|Kidney(143;0.0627)|COAD - Colon adenocarcinoma(41;0.148)		GACTACCAAAGGGCCAAAGGT	0.378		NaN											1	0	5.18039e-06	0.00308	5.41235e-06	8	16				
RXFP3	51289	broad.mit.edu	37	5	33937235	33937235	+	Silent	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr5:33937235G>A	uc003jic.1	+	1	747	c.390G>A	c.(388-390)CAG>CAA	p.Q130Q		NM_016568	NP_057652	Q9NSD7	RL3R1_HUMAN	relaxin/insulin-like family peptide receptor 3	130	Helical; Name=2; (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1						CGGACTTTCAGTTTGTGCTCA	0.567		NaN											0	0	0	0.000602	0	4	89				
CWC27	10283	broad.mit.edu	37	5	64081347	64081347	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr5:64081347G>C	uc003jtn.1	+	5	655	c.436G>C	c.(436-438)GAA>CAA	p.E146Q	CWC27_uc003jtl.2_Missense_Mutation_p.E146Q|CWC27_uc003jtm.2_Missense_Mutation_p.E146Q|CWC27_uc010iwt.1_Missense_Mutation_p.E146Q	NM_005869	NP_005860	Q6UX04	CWC27_HUMAN	serologically defined colon cancer antigen 10	146	PPIase cyclophilin-type.				protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity				0						GCGACTGTCAGAAGTAGACAT	0.333		NaN											0	0	0	0.003163	0	12	20				
SLCO6A1	133482	broad.mit.edu	37	5	101735415	101735415	+	Missense_Mutation	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr5:101735415C>A	uc003knn.2	-	10	1830	c.1658G>T	c.(1657-1659)GGA>GTA	p.G553V	SLCO6A1_uc003kno.2_Missense_Mutation_p.G300V|SLCO6A1_uc003knp.2_Missense_Mutation_p.G553V|SLCO6A1_uc003knq.2_Missense_Mutation_p.G491V	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	553	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		AGTTATTAATCCTTCTTTAAT	0.323		NaN											1	0	0.00307968	0.00308	0.00313948	7	8				
CAMLG	819	broad.mit.edu	37	5	134086448	134086448	+	Splice_Site	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr5:134086448G>C	uc003kzt.2	+	4	805	c.700_splice	c.e4-1	p.S234_splice	CAMLG_uc003kzu.2_Splice_Site_p.E80_splice	NM_001745	NP_001736	P49069	CAMLG_HUMAN	calcium modulating ligand						defense response	endoplasmic reticulum|integral to membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Cyclosporine(DB00091)	TCTCTACACAGAGTGAAAAGA	0.358		NaN											0	0	0	0.004482	0	8	16				
FGF18	8817	broad.mit.edu	37	5	170883752	170883752	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr5:170883752C>T	uc003mbk.2	+	5	1104	c.567C>T	c.(565-567)TTC>TTT	p.F189F		NM_003862	NP_003853	O76093	FGF18_HUMAN	fibroblast growth factor 18 precursor	189					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell proliferation	extracellular space|nucleolus	growth factor activity|type 1 fibroblast growth factor receptor binding|type 2 fibroblast growth factor receptor binding				0	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AGAAGCCCTTCAAGTACACGA	0.682		NaN											0	0	0	0.01441	0	53	9				
HLA-B	3106	broad.mit.edu	37	6	31322894	31322894	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr6:31322894C>T	uc003nth.2	-	5	1056	c.1002G>A	c.(1000-1002)AGG>AGA	p.R334R	HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_RNA|HLA-B_uc003ntf.2_Intron|HLA-B_uc003ntg.1_Silent_p.R213R|HLA-B_uc003nti.1_Intron	NM_005514	NP_005505	P01889	1B07_HUMAN	major histocompatibility complex, class I, B	334	Cytoplasmic (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity				0						CTGAACTCTTCCTCCTACACA	0.582		NaN							Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				0	0	0	0.00245	0	14	102				
COL11A2	1302	broad.mit.edu	37	6	33136782	33136782	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr6:33136782G>C	uc003ocx.1	-	52	4030	c.3802C>G	c.(3802-3804)CCT>GCT	p.P1268A	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.P1182A|COL11A2_uc003ocz.1_Missense_Mutation_p.P1161A	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1268	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						AAACCAACAGGACCCTGATCC	0.592		NaN											0	0	0	0.00278	0	23	41				
PTCRA	171558	broad.mit.edu	37	6	42893345	42893345	+	Silent	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr6:42893345C>G	uc003osx.2	+	4	852	c.771C>G	c.(769-771)CTC>CTG	p.L257L	PTCRA_uc010jxy.2_Silent_p.L232L|PTCRA_uc010jxz.2_Silent_p.L150L	NM_138296	NP_612153	Q6ISU1	PTCRA_HUMAN	pre T-cell antigen receptor alpha precursor	257	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(2)	2	Colorectal(47;0.196)		all cancers(41;0.000731)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			GATCTGCCCTCAGGGCTCCTT	0.632		NaN											0	0	0	0.008291	0	11	12				
HSP90AB1	3326	broad.mit.edu	37	6	44221102	44221102	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr6:44221102C>G	uc003oxa.1	+	11	2136	c.2052C>G	c.(2050-2052)ATC>ATG	p.I684M	HSP90AB1_uc011dvr.1_Missense_Mutation_p.I674M|HSP90AB1_uc003oxb.1_Missense_Mutation_p.I684M|HSP90AB1_uc011dvs.1_Missense_Mutation_p.I504M|HSP90AB1_uc003oxc.1_Missense_Mutation_p.I322M	NM_007355	NP_031381	P08238	HS90B_HUMAN	heat shock 90kDa protein 1, beta	684					axon guidance|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of nitric oxide biosynthetic process|protein folding|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to unfolded protein	cytosol|melanosome	ATP binding|nitric-oxide synthase regulator activity|TPR domain binding|unfolded protein binding			lung(3)|breast(1)	4	all_cancers(18;1.7e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			ATCGCATGATCAAGCTAGGTC	0.483		NaN											0	0	0	0.01441	0	62	197				
LAMA2	3908	broad.mit.edu	37	6	129687390	129687390	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr6:129687390C>G	uc003qbn.2	+	33	4849	c.4744C>G	c.(4744-4746)CTT>GTT	p.L1582V	LAMA2_uc003qbo.2_Missense_Mutation_p.L1582V	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1582	Domain II and I.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CACTGGCCTTCTTCTCGGTGA	0.463		NaN											0	0	0	0.012319	0	18	19				
C6orf192	116843	broad.mit.edu	37	6	133105152	133105152	+	Missense_Mutation	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr6:133105152C>A	uc003qdw.1	-	6	730	c.578G>T	c.(577-579)GGC>GTC	p.G193V	C6orf192_uc011eco.1_Missense_Mutation_p.G67V	NM_052831	NP_439896	Q6NT16	CF192_HUMAN	hypothetical protein LOC116843	193	Extracellular (Potential).				transmembrane transport	integral to membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(155;0.00303)|GBM - Glioblastoma multiforme(226;0.0265)		CACTTCATAGCCAAAGGATTG	0.383		NaN											1	0	2.27111e-07	0.013537	2.38467e-07	12	23				
CCDC28A	25901	broad.mit.edu	37	6	139113917	139113917	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr6:139113917G>A	uc003qie.2	+	6	957	c.802G>A	c.(802-804)GTT>ATT	p.V268I		NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	268											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		TGCACAAGATGTTCCAAATAC	0.338		NaN											0	0	0	0.00308	0	6	26				
CCDC126	90693	broad.mit.edu	37	7	23682709	23682709	+	Missense_Mutation	SNP	C	C	T	rs146283363	byFrequency	TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr7:23682709C>T	uc003swl.2	+	4	855	c.398C>T	c.(397-399)ACG>ATG	p.T133M	CCDC126_uc003swm.2_Missense_Mutation_p.T133M|CCDC126_uc003swn.2_Missense_Mutation_p.T133M	NM_138771	NP_620126	Q96EE4	CC126_HUMAN	coiled-coil domain containing 126 precursor	133						extracellular region				ovary(1)|skin(1)	2						AATAAAAGAACGAATGTCTCG	0.428		NaN											0	0	0	0.00308	0	8	19				
TNS3	64759	broad.mit.edu	37	7	47408747	47408747	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr7:47408747G>A	uc003tnv.2	-	17	1863	c.1496C>T	c.(1495-1497)TCG>TTG	p.S499L	TNS3_uc003tnw.2_Missense_Mutation_p.S499L	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	499						focal adhesion	protein binding			ovary(4)	4						AGGCCCTTCCGAGGAGGACAG	0.592		NaN											0	0	0	0.004482	0	6	39				
POM121L12	285877	broad.mit.edu	37	7	53104067	53104067	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr7:53104067C>T	uc003tpz.2	+	1	719	c.703C>T	c.(703-705)CCT>TCT	p.P235S		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	235											0						CAGGCCAGGGCCTCTGAAGCC	0.642		NaN											0	0	0	0.003163	0	14	56				
PSPH	5723	broad.mit.edu	37	7	56088853	56088853	+	Missense_Mutation	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr7:56088853C>A	uc003trg.2	-	3	416	c.53G>T	c.(52-54)TGT>TTT	p.C18F	PSPH_uc003trh.2_Missense_Mutation_p.C18F|PSPH_uc003tri.2_Missense_Mutation_p.C18F|PSPH_uc003trj.2_Missense_Mutation_p.C47F	NM_004577	NP_004568	P78330	SERB_HUMAN	phosphoserine phosphatase	18					L-serine biosynthetic process	cytoplasm	calcium ion binding|magnesium ion binding|phosphoserine phosphatase activity|protein homodimerization activity			ovary(1)|skin(1)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			AACATCAAAACACACAGCATC	0.438		NaN											1	0	0.000219431	0.00245	0.000225885	15	76				
MLXIPL	51085	broad.mit.edu	37	7	73011529	73011529	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr7:73011529G>C	uc003tyn.1	-	9	1634	c.1586C>G	c.(1585-1587)ACA>AGA	p.T529R	MLXIPL_uc003tyj.1_5'UTR|MLXIPL_uc003tyk.1_Missense_Mutation_p.T529R|MLXIPL_uc003tyl.1_Missense_Mutation_p.T529R|MLXIPL_uc003tym.1_Missense_Mutation_p.T529R|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Missense_Mutation_p.T436R|MLXIPL_uc003tyq.1_Missense_Mutation_p.T271R	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	529					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				GAGCAGCTGTGTGAGGCAGGG	0.672		NaN											0	0	0	0.009096	0	4	14				
ZNF804B	219578	broad.mit.edu	37	7	88966018	88966018	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr7:88966018C>T	uc011khi.1	+	4	4260	c.3722C>T	c.(3721-3723)GCA>GTA	p.A1241V		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1241						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CTTTCACAGGCACATTTCAGT	0.468		NaN								HNSCC(36;0.09)			0	0	0	0.008871	0	21	63				
ANKIB1	54467	broad.mit.edu	37	7	91981821	91981821	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr7:91981821G>A	uc003ulw.2	+	9	1638	c.1262G>A	c.(1261-1263)TGG>TAG	p.W421*		NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	421	IBR-type; degenerate.						protein binding|zinc ion binding			lung(1)	1	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GCCATTAAATGGTGTCCTACT	0.383		NaN											0	0	0	0.004482	0	7	40				
ANKIB1	54467	broad.mit.edu	37	7	91981845	91981845	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr7:91981845G>C	uc003ulw.2	+	9	1662	c.1286G>C	c.(1285-1287)AGA>ACA	p.R429T		NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	429	IBR-type; degenerate.						protein binding|zinc ion binding			lung(1)	1	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GGCTGTGACAGAGCAGTAAGA	0.398		NaN											0	0	0	0.00245	0	14	44				
CTTNBP2	83992	broad.mit.edu	37	7	117375046	117375046	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr7:117375046C>T	uc003vjf.2	-	16	3889	c.3797G>A	c.(3796-3798)CGC>CAC	p.R1266H		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1266										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		CTGCACCCAGCGGAAATGCTG	0.493		NaN											0	0	0	0.004482	0	9	30				
XRCC2	7516	broad.mit.edu	37	7	152373252	152373252	+	Splice_Site	SNP	C	C	G	rs3218384	by1000genomes	TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr7:152373252C>G	uc003wld.2	-	1	1	c.-85_splice	c.e1-1			NM_005431	NP_005422	O43543	XRCC2_HUMAN	X-ray repair cross complementing protein 2						meiosis	nucleus	ATP binding|DNA binding|DNA-dependent ATPase activity			breast(1)|liver(1)	2		all_hematologic(28;0.0592)|Prostate(32;0.081)	OV - Ovarian serous cystadenocarcinoma(82;0.0423)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0429)		CCAGTCAAACCCGCCCACCCG	0.701		NaN						Homologous_recombination					0	0	0	0.004672	0	3	28				
DEFA5	1670	broad.mit.edu	37	8	6912954	6912954	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr8:6912954C>T	uc003wra.1	-	2	324	c.284G>A	c.(283-285)TGA>TAA	p.*95*		NM_021010	NP_066290	Q01523	DEF5_HUMAN	defensin, alpha 5 preproprotein	95					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		CTAGGAAGCTCAGCGACAGCA	0.483		NaN											0	0	0	0.004482	0	9	9				
FGFR1	2260	broad.mit.edu	37	8	38275486	38275486	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr8:38275486C>G	uc003xlp.2	-	12	2396	c.1454G>C	c.(1453-1455)GGA>GCA	p.G485A	FGFR1_uc010lwf.2_RNA|FGFR1_uc011lbo.1_Missense_Mutation_p.G483A|FGFR1_uc011lbp.1_Missense_Mutation_p.G396A|FGFR1_uc011lbq.1_Missense_Mutation_p.G394A|FGFR1_uc010lwk.2_Missense_Mutation_p.G475A	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	485	ATP.|Cytoplasmic (Potential).|Protein kinase.				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	GCAGCCCTCTCCCAGGGGTTT	0.552		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome						0	0	0	0.010771	0	46	25				
MSC	9242	broad.mit.edu	37	8	72756080	72756080	+	Missense_Mutation	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr8:72756080C>A	uc003xyx.1	-	1	652	c.334G>T	c.(334-336)GCC>TCC	p.A112S	uc011lff.1_Intron|uc003xyy.2_5'Flank	NM_005098	NP_005089	O60682	MUSC_HUMAN	musculin	112	Basic motif.				transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0	Breast(64;0.176)		Epithelial(68;0.137)|BRCA - Breast invasive adenocarcinoma(89;0.203)			CGGGCGTTGGCCGCGTTCCGC	0.701		NaN									OREG0018826	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	1	0	9.70103e-10	0.008291	1.0394e-09	11	25				
HNF4G	3174	broad.mit.edu	37	8	76468215	76468215	+	Splice_Site	SNP	A	A	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr8:76468215A>T	uc003yaq.2	+	7	775	c.505_splice	c.e7-2	p.V169_splice	HNF4G_uc003yar.2_Splice_Site_p.V206_splice	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma						endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			TTTTTCATTAAGGTGGCACTG	0.333		NaN											0	0	0	0.000602	0	5	8				
IMPA1	3612	broad.mit.edu	37	8	82592977	82592977	+	Silent	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr8:82592977C>A	uc003ych.2	-	3	232	c.105G>T	c.(103-105)CTG>CTT	p.L35L	IMPA1_uc011lfq.1_Silent_p.L94L|IMPA1_uc011lfr.1_Silent_p.L35L	NM_005536	NP_005527	P29218	IMPA1_HUMAN	inositol(myo)-1(or 4)-monophosphatase 1 isoform	35					inositol phosphate dephosphorylation|phosphatidylinositol biosynthetic process|signal transduction	cytoplasm	inositol-1(or 4)-monophosphatase activity|metal ion binding|protein homodimerization activity			skin(1)	1					Lithium(DB01356)	GAGAACTTTTCAGCATAACAT	0.299		NaN											1	0	5.16669e-11	0.010729	5.56412e-11	12	63				
DCAF10	79269	broad.mit.edu	37	9	37842171	37842171	+	Missense_Mutation	SNP	T	T	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr9:37842171T>C	uc004aao.2	+	3	813	c.739T>C	c.(739-741)TGC>CGC	p.C247R	DCAF10_uc010mlz.2_Missense_Mutation_p.C74R	NM_024345	NP_077321	Q5QP82	DCA10_HUMAN	WD repeat domain 32	247	WD 2.					CUL4 RING ubiquitin ligase complex				central_nervous_system(1)	1						CACCAAAGTATGCACTTTACA	0.368		NaN											0	0	0	0.008871	0	19	26				
ANXA1	301	broad.mit.edu	37	9	75777739	75777739	+	Missense_Mutation	SNP	T	T	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr9:75777739T>C	uc004ajf.1	+	7	591	c.517T>C	c.(517-519)TCT>CCT	p.S173P	ANXA1_uc004aje.1_Missense_Mutation_p.S173P|ANXA1_uc004ajg.1_Missense_Mutation_p.S173P	NM_000700	NP_000691	P04083	ANXA1_HUMAN	annexin I	173	Annexin 2.				alpha-beta T cell differentiation|anti-apoptosis|cell surface receptor linked signaling pathway|cellular component movement|inflammatory response|keratinocyte differentiation|lipid metabolic process|peptide cross-linking|positive regulation of vesicle fusion	basolateral plasma membrane|cilium|cornified envelope|cytoplasm|extracellular region|nucleus	calcium ion binding|calcium-dependent phospholipid binding|phospholipase A2 inhibitor activity|protein binding, bridging|receptor binding|structural molecule activity			breast(1)|central_nervous_system(1)	2		all_epithelial(88;2.54e-11)		OV - Ovarian serous cystadenocarcinoma(323;2.82e-06)|GBM - Glioblastoma multiforme(74;0.0325)	Alclometasone(DB00240)|Amcinonide(DB00288)|Beclomethasone(DB00394)|Betamethasone(DB00443)|Clobetasol(DB01013)|Clocortolone(DB00838)|Desonide(DB01260)|Desoximetasone(DB00547)|Dexamethasone(DB01234)|Diflorasone(DB00223)|Flumethasone Pivalate(DB00663)|Halobetasol Propionate(DB00596)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mometasone(DB00764)|Prednicarbate(DB01130)|Prednisone(DB00635)|Rimexolone(DB00896)|Triamcinolone(DB00620)	CTCAGACACATCTGGAGATTT	0.308		NaN											0	0	0	0.004672	0	3	1				
SCAI	286205	broad.mit.edu	37	9	127781102	127781102	+	Silent	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr9:127781102G>A	uc004bpe.2	-	9	918	c.837C>T	c.(835-837)CTC>CTT	p.L279L	SCAI_uc004bpd.2_Silent_p.L302L|SCAI_uc010mwu.2_RNA	NM_001144877	NP_001138349	Q8N9R8	SCAI_HUMAN	suppressor of cancer cell invasion isoform 2	279					negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|integral to membrane|nucleus	protein binding|transcription corepressor activity			ovary(2)|breast(2)|central_nervous_system(1)	5						TACCAATAATGAGTGCGTCAG	0.378		NaN											0	0	0	0.00278	0	22	31				
PRRX2	51450	broad.mit.edu	37	9	132481528	132481528	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr9:132481528G>A	uc004byh.2	+	2	505	c.278G>A	c.(277-279)GGG>GAG	p.G93E		NM_016307	NP_057391	Q99811	PRRX2_HUMAN	paired related homeobox 2	93						nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1		Ovarian(14;0.00556)				CCCAGCCCGGGGCGCGGTAGC	0.672		NaN											0	0	0	0.00308	0	8	4				
PNPLA7	375775	broad.mit.edu	37	9	140379137	140379137	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr9:140379137G>A	uc004cnf.2	-	20	2511	c.2174C>T	c.(2173-2175)CCG>CTG	p.P725L	C9orf167_uc011mew.1_Intron|PNPLA7_uc004cnd.1_5'UTR|PNPLA7_uc004cne.1_5'UTR|PNPLA7_uc011mfa.1_Missense_Mutation_p.P133L|PNPLA7_uc010ncj.1_Missense_Mutation_p.P750L	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	725					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		GTTGACAGCCGGGTTCCCCAA	0.662		NaN											0	0	0	0.004672	0	3	11				
ZMYND19	116225	broad.mit.edu	37	9	140481554	140481554	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr9:140481554C>T	uc004cno.1	-	4	446	c.224G>A	c.(223-225)CGG>CAG	p.R75Q		NM_138462	NP_612471	Q96E35	ZMY19_HUMAN	zinc finger, MYND domain containing 19	75						Golgi apparatus|plasma membrane	zinc ion binding			skin(1)	1	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000275)|Epithelial(140;0.00047)		CCCCCGGTGCCGCTCCCTAGA	0.622		NaN											0	0	0	0.008291	0	10	55				
IL3RA	3563	broad.mit.edu	37	X	1471230	1471230	+	Nonsense_Mutation	SNP	C	C	G	rs147935693		TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:1471230C>G	uc004cps.2	+	6	796	c.447C>G	c.(445-447)TAC>TAG	p.Y149*	IL3RA_uc011mhd.1_Nonsense_Mutation_p.Y71*	NM_002183	NP_002174	P26951	IL3RA_HUMAN	interleukin 3 receptor, alpha precursor	149	Extracellular (Potential).					integral to membrane|plasma membrane	interleukin-3 receptor activity			skin(2)|lung(1)	3		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	GTCAACAGTACGAGTGTCTTC	0.602		NaN											0	0	0	0.01441	0	54	524				
DMD	1756	broad.mit.edu	37	X	32503148	32503148	+	Silent	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:32503148C>T	uc004dda.1	-	21	2935	c.2691G>A	c.(2689-2691)CTG>CTA	p.L897L	DMD_uc004dcz.2_Silent_p.L774L|DMD_uc004dcy.1_Silent_p.L893L|DMD_uc004ddb.1_Silent_p.L889L|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	897	Spectrin 5.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				CTTTCTCTTTCAGGGCTATGC	0.413		NaN											0	0	0	0.00308	0	7	31				
WAS	7454	broad.mit.edu	37	X	48547079	48547079	+	Missense_Mutation	SNP	G	G	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:48547079G>C	uc004dkm.3	+	10	1019	c.962G>C	c.(961-963)CGA>CCA	p.R321P		NM_000377	NP_000368	P42768	WASP_HUMAN	Wiskott-Aldrich syndrome protein	321					blood coagulation|defense response|epidermis development|immune response|T cell receptor signaling pathway	actin cytoskeleton|cytosol	identical protein binding|small GTPase regulator activity			ovary(1)	1		all_lung(315;1.27e-10)				CCGCCATCTCGAGGAGGGAAC	0.522		NaN	Mis|N|F|S			lymphoma			Wiskott-Aldrich_syndrome				0	0	0	0.010729	0	9	53				
KDM5C	8242	broad.mit.edu	37	X	53247478	53247478	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:53247478C>T	uc004drz.2	-	3	864	c.331G>A	c.(331-333)GAC>AAC	p.D111N	KDM5C_uc011moc.1_RNA|KDM5C_uc011mod.1_Intron|KDM5C_uc004dsa.2_Missense_Mutation_p.D111N	NM_004187	NP_004178	P41229	KDM5C_HUMAN	jumonji, AT rich interactive domain 1C isoform	111	ARID.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			kidney(9)|ovary(5)|salivary_gland(1)|autonomic_ganglia(1)|haematopoietic_and_lymphoid_tissue(1)|oesophagus(1)	18						CTGTAGAGGTCCAAGATCCGC	0.488		NaN	N|F|S		clear cell renal carcinoma								0	0	0	0.006214	0	10	50				
WNK3	65267	broad.mit.edu	37	X	54276034	54276034	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:54276034C>T	uc004dtd.1	-	17	3186	c.2747G>A	c.(2746-2748)CGG>CAG	p.R916Q	WNK3_uc004dtc.1_Missense_Mutation_p.R916Q	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	916					intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						CAATGTGTCCCGTGATATTTC	0.398		NaN											0	0	0	0.006214	0	8	78				
MTMR8	55613	broad.mit.edu	37	X	63548760	63548760	+	Missense_Mutation	SNP	G	G	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:63548760G>A	uc004dvs.2	-	12	1441	c.1373C>T	c.(1372-1374)TCT>TTT	p.S458F	MTMR8_uc011mou.1_Intron	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	458	Myotubularin phosphatase.					nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						AGGCCACACAGAATGTGTTTT	0.403		NaN											0	0	0	0.000602	0	5	5				
RLIM	51132	broad.mit.edu	37	X	73811938	73811938	+	Silent	SNP	G	G	C	rs61754468	by1000genomes	TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:73811938G>C	uc004ebu.2	-	5	1502	c.1212C>G	c.(1210-1212)ACC>ACG	p.T404T	RLIM_uc004ebw.2_Silent_p.T404T	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	404					random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						GCCTTAACATGGTCTGAATTG	0.413		NaN											0	0	0	0.000602	0	5	65				
TGIF2LX	90316	broad.mit.edu	37	X	89177629	89177629	+	Missense_Mutation	SNP	A	A	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:89177629A>T	uc004efe.2	+	2	594	c.545A>T	c.(544-546)AAG>ATG	p.K182M		NM_138960	NP_620410	Q8IUE1	TF2LX_HUMAN	TGFB-induced factor homeobox 2-like, X-linked	182						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						CCTAGCCAGAAGCTCACCGGA	0.562		NaN											0	0	0	0.001984	0	7	22				
GPRASP2	114928	broad.mit.edu	37	X	101970046	101970046	+	Silent	SNP	T	T	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:101970046T>G	uc004ejk.2	+	4	1583	c.249T>G	c.(247-249)GGT>GGG	p.G83G	GPRASP2_uc004ejl.2_Silent_p.G83G|GPRASP2_uc004ejm.2_Silent_p.G83G|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	83						cytoplasm	protein binding			ovary(1)	1						TAATGGGTGGTGCAAGACCCA	0.562		NaN											0	0	0	0.009096	0	4	58				
IGSF1	3547	broad.mit.edu	37	X	130409595	130409595	+	Missense_Mutation	SNP	C	C	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:130409595C>A	uc004ewd.2	-	16	3279	c.3041G>T	c.(3040-3042)TGG>TTG	p.W1014L	IGSF1_uc004ewe.3_Missense_Mutation_p.W1008L|IGSF1_uc004ewf.2_Missense_Mutation_p.W994L	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1014	Extracellular (Potential).|Ig-like C2-type 10.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GGTGGATCCCCAGAGCTGCAT	0.537		NaN											1	0	4.68919e-08	0.008291	4.99863e-08	11	64				
GPR112	139378	broad.mit.edu	37	X	135441568	135441568	+	Silent	SNP	A	A	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:135441568A>G	uc004ezu.1	+	11	7389	c.7098A>G	c.(7096-7098)CAA>CAG	p.Q2366Q	GPR112_uc010nsb.1_Silent_p.Q2161Q|GPR112_uc010nsc.1_Intron	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2366	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CACAAGATCAATTGACGTTAT	0.343		NaN											0	0	0	0.004672	0	3	41				
CTAG2	30848	broad.mit.edu	37	X	153880682	153880682	+	Missense_Mutation	SNP	C	C	G			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:153880682C>G	uc004fmi.1	-	2	546	c.493G>C	c.(493-495)GCT>CCT	p.A165P	CTAG2_uc004fmh.1_Intron	NM_020994	NP_066274	O75638	CTAG2_HUMAN	cancer/testis antigen 2 isoform LAGE-1b	165						centrosome				pancreas(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					AGATCTCTAGCTTTCTGCCCC	0.632		NaN											0	0	0	0.009718	0	43	10				
CTAG2	30848	broad.mit.edu	37	X	153880694	153880694	+	Missense_Mutation	SNP	C	C	T			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chrX:153880694C>T	uc004fmi.1	-	2	534	c.481G>A	c.(481-483)GAG>AAG	p.E161K	CTAG2_uc004fmh.1_Intron	NM_020994	NP_066274	O75638	CTAG2_HUMAN	cancer/testis antigen 2 isoform LAGE-1b	161						centrosome				pancreas(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TTCTGCCCCTCCGGGGAGGCG	0.632		NaN											0	0	0	0.010771	0	45	10				
NOTCH2	4853	broad.mit.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:120612003_120612004delGG	uc001eik.2	-	1	273_274	c.17_18delCC	c.(16-18)CCCfs	p.P6fs	NOTCH2_uc001eil.2_Frame_Shift_Del_p.P6fs|NOTCH2_uc001eim.3_5'UTR	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	6					anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACAGCAGAGCGGGGCGCAGGGC	0.663		NaN	N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				NaN	NaN	NaN	NaN	NaN	12	22	---		---	---
RHBG	57127	broad.mit.edu	37	1	156339062	156339073	+	In_Frame_Del	DEL	GCCGCGGGCCGG	GCCGCGGGCCGG	-			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr1:156339062_156339073delGCCGCGGGCCGG	uc010pho.1	+	1	60_71	c.22_33delGCCGCGGGCCGG	c.(22-33)GCCGCGGGCCGGdel	p.AAGR8del	RHBG_uc010phm.1_In_Frame_Del_p.AAGR8del|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_5'UTR|RHBG_uc009wrz.2_5'UTR|RHBG_uc001for.2_5'UTR	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	8_11	Cytoplasmic (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					TCCTAGCCGCGCCGCGGGCCGGCGACTGCAGC	0.67		NaN											NaN	NaN	NaN	NaN	NaN	16	90	---		---	---
ITGA8	8516	broad.mit.edu	37	10	15639284	15639301	+	Splice_Site	DEL	CAGTGGTCGAAATCCCTA	CAGTGGTCGAAATCCCTA	-			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr10:15639284_15639301delCAGTGGTCGAAATCCCTA	uc001ioc.1	-	21	2119	c.2119_splice	c.e21-1	p.G707_splice	ITGA8_uc010qcb.1_Splice_Site_p.G692_splice	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor						cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						ACTCACAGCTCAGTGGTCGAAATCCCTACAATTGCAAA	0.491		NaN											NaN	NaN	NaN	NaN	NaN	8	36	---		---	---
FOXA1	3169	broad.mit.edu	37	14	38061168	38061169	+	Frame_Shift_Ins	INS	-	-	C			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr14:38061168_38061169insC	uc001wuf.2	-	2	1132_1133	c.820_821insG	c.(820-822)GCCfs	p.A274fs	FOXA1_uc010tpz.1_Frame_Shift_Ins_p.A241fs	NM_004496	NP_004487	P55317	FOXA1_HUMAN	forkhead box A1	274					chromatin remodeling|embryo development|epithelial cell maturation involved in prostate gland development|epithelial tube branching involved in lung morphogenesis|epithelial-mesenchymal signaling involved in prostate gland development|glucose homeostasis|lung epithelial cell differentiation|negative regulation of survival gene product expression|neuron fate specification|pattern specification process|positive regulation of estrogen receptor signaling pathway|positive regulation of mitotic cell cycle|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|prostate gland epithelium morphogenesis|prostate gland stromal morphogenesis|response to estradiol stimulus|secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding				0	Breast(36;0.0954)|Esophageal squamous(585;0.164)|Hepatocellular(127;0.213)		Lung(238;5.41e-07)|LUAD - Lung adenocarcinoma(48;2.48e-05)|Epithelial(34;0.0454)|LUSC - Lung squamous cell carcinoma(13;0.0917)|all cancers(34;0.0925)|BRCA - Breast invasive adenocarcinoma(188;0.239)	GBM - Glioblastoma multiforme(112;0.0222)		cccgccgccggcccccgGCTGC	0.52		NaN											NaN	NaN	NaN	NaN	NaN	13	3	---	Inconclusive	---	---
PMM2	5373	broad.mit.edu	37	16	8906913	8906918	+	In_Frame_Del	DEL	GAAAAT	GAAAAT	-	rs34258285	byFrequency	TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr16:8906913_8906918delGAAAAT	uc002czf.3	+	7	659_664	c.589_594delGAAAAT	c.(589-594)GAAAATdel	p.EN197del	PMM2_uc010uyf.1_RNA|PMM2_uc010uyg.1_In_Frame_Del_p.EN114del|PMM2_uc010uyh.1_In_Frame_Del_p.EN72del|PMM2_uc010buj.2_RNA|PMM2_uc010uyi.1_In_Frame_Del_p.EN50del	NM_000303	NP_000294	O15305	PMM2_HUMAN	phosphomannomutase 2	197_198					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	cytosol	phosphomannomutase activity			ovary(1)	1						GCGACATGTGGAAAATGACGGTTATA	0.471		NaN											NaN	NaN	NaN	NaN	NaN	18	208	---		---	---
MEGF10	84466	broad.mit.edu	37	5	126784798	126784799	+	Frame_Shift_Ins	INS	-	-	CAAT			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr5:126784798_126784799insCAAT	uc003kuh.3	+	23	3226_3227	c.2864_2865insCAAT	c.(2863-2865)AACfs	p.N955fs	MEGF10_uc003kui.3_Frame_Shift_Ins_p.N955fs	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	955	Cytoplasmic (Potential).|Necessary for formation of large intracellular vacuoles.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		CAGTCAAAAAACAATCAACTGT	0.446		NaN											NaN	NaN	NaN	NaN	NaN	14	23	---		---	---
PRRC1	133619	broad.mit.edu	37	5	126860380	126860381	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr5:126860380_126860381insA	uc003kuk.2	+	3	441_442	c.261_262insA	c.(259-264)GTTACTfs	p.V87fs	PRRC1_uc003kuj.3_Frame_Shift_Ins_p.V87fs	NM_130809	NP_570721	Q96M27	PRRC1_HUMAN	proline-rich coiled-coil 1	87_88	Pro-rich.					Golgi apparatus					0		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0851)|Epithelial(69;0.113)		CACCACTTGTTACTTCTATGCC	0.52		NaN											NaN	NaN	NaN	NaN	NaN	63	98	---		---	---
COL19A1	1310	broad.mit.edu	37	6	70639419	70639419	+	Frame_Shift_Del	DEL	C	C	-	rs112596596	byFrequency	TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr6:70639419delC	uc003pfc.1	+	6	610	c.493delC	c.(493-495)CCTfs	p.P165fs	COL19A1_uc010kam.1_Frame_Shift_Del_p.P61fs	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	165	TSP N-terminal.				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						AGAACTCCGTCCTTTGTTTGA	0.393		NaN											NaN	NaN	NaN	NaN	NaN	6	6	---		---	---
CAMSAP1	157922	broad.mit.edu	37	9	138715799	138715800	+	Frame_Shift_Ins	INS	-	-	T	rs148250832	byFrequency	TCGA-HQ-A2OE-01A-11D-A202-08	TCGA-HQ-A2OE-10A-01D-A202-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61324839-e90a-49f2-a9c9-629d7b125fe9	af92ee60-ca4f-4396-b0ff-b4b8c0ee0bb4	g.chr9:138715799_138715800insT	uc004cgr.3	-	10	1396_1397	c.1396_1397insA	c.(1396-1398)ACCfs	p.T466fs	CAMSAP1_uc004cgq.3_Frame_Shift_Ins_p.T356fs|CAMSAP1_uc010nbg.2_Frame_Shift_Ins_p.T188fs	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	466						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		GACTCACCTGGTTTTTTTTTCT	0.337		NaN											NaN	NaN	NaN	NaN	NaN	2	4	---		---	---
