writing sdrf to CESC.merger.sdrf.txt

------------------------------------------------------------------
2014-04-17 16:01:45.069650
. ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/CESC/8016242/infile1.input.tsv']

Make a softlink......

Flag: True.
Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/CESC/8016242/infile1.input.tsv

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BI-A0VR-01.wig.txt
('', None)
0
e9863c278e2e34be8e4d90c2c39086b0
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BI-A0VS-01.wig.txt
('', None)
0
4bf57ce3c8998406fa9e6e1665c04025
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BI-A20A-01.wig.txt
('', None)
0
439bc39ba9f7df8882c001fd0bb12509
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A0TN-01.wig.txt
('', None)
0
27e775d888058bf23ee9918fbbe0d4cb
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1BE-01.wig.txt
('', None)
0
b0dd38c48653fe8690be7b01f4ba341c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1BF-01.wig.txt
('', None)
0
87ea886a01f4242a9674da481b55b030
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1BI-01.wig.txt
('', None)
0
cb1bdd7b438803b77a879c24223e37b5
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1BJ-01.wig.txt
('', None)
0
1de0924b60592523b68a94c52d89f355
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1BK-01.wig.txt
('', None)
0
eb7d911406e30038aa7a738d6fe480ac
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1BL-01.wig.txt
('', None)
0
d635d3b6192b5c9d0af7ce9825a69228
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1BM-01.wig.txt
('', None)
0
9ca6278cfe640cb7381c39ec68985239
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1BN-01.wig.txt
('', None)
0
60574bd5f80366ad274e1cff747dc59e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1M5-01.wig.txt
('', None)
0
996af5fac290d907fd0f82e9a42de0ad
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1M6-01.wig.txt
('', None)
0
a6736df7988529901ff28ff43aeda3d1
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1M7-01.wig.txt
('', None)
0
3c2748706600dec1dee768d34fff481b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1M8-01.wig.txt
('', None)
0
bf973ce37a9184ab7cd6dd4cba82a6cc
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1M9-01.wig.txt
('', None)
0
5c8c3ee44dac81a773db8d7816eb7457
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1ME-01.wig.txt
('', None)
0
e41aafb8481c751c3051be4a01e70ea2
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1MF-01.wig.txt
('', None)
0
25b23429bde5198c8ba912f13990a7b1
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1MH-01.wig.txt
('', None)
0
a56b9dde8f1a5c70182accb6b1a0e80d
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1MI-01.wig.txt
('', None)
0
9874e7179a832356dfacd93ff1a0f172
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1MJ-01.wig.txt
('', None)
0
c90e2921137723c4a6defc6ad06525a9
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1MK-01.wig.txt
('', None)
0
1a61c9cfc4e4e8ebf0dbfd5093097d95
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1ML-01.wig.txt
('', None)
0
ccc97bb40b19215fad2cf7d249fd22ae
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1MN-01.wig.txt
('', None)
0
5975df4e66e0524aa1086551d88dcb88
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1MP-01.wig.txt
('', None)
0
f07f139fdb508a6907cf6c8fafaeb0a7
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C5-A1MQ-01.wig.txt
('', None)
0
4e570e42996e450ce02bf3ec84a98401
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-DR-A0ZL-01.wig.txt
('', None)
0
cf46e09d78a8cb4d6c0a12e2311ba564
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-DR-A0ZM-01.wig.txt
('', None)
0
cffbc333386c08cb34be9f36c0954015
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-DS-A0VK-01.wig.txt
('', None)
0
c3df4b0d1282b305d878ef871e2e167b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-DS-A0VL-01.wig.txt
('', None)
0
44c09b5710addaeee4bd650fd089b6a4
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-DS-A0VM-01.wig.txt
('', None)
0
531817efb04629f0fcf6b90c291d6c29
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-DS-A0VN-01.wig.txt
('', None)
0
cac2e613698e83c1d95e138d708c0d77
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-DS-A1OC-01.wig.txt
('', None)
0
ee6c599258091a1e82468efec7dc9c44
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-DS-A1OD-01.wig.txt
('', None)
0
79b2952b002d62fdbbb2b7ad16784d31
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-EA-A1QT-01.wig.txt
('', None)
0
341a13578fa25ab5db32cd37dadd4714
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-EX-A1H5-01.wig.txt
('', None)
0
1707bc52817d20cba998a29853f6b9c1
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-FU-A23K-01.wig.txt
('', None)
0
7eb482a722c8786ec2224e1012bfa1a5
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-FU-A23L-01.wig.txt
('', None)
0
ce899f202dc88145b432f595754502e8
It is not in the dictionary
Make a softlink is done.


