Extract Name	Hybridization Name	Data File	Comment [TCGA Archive Name]	Comment [TCGA Data Level]	Comment [TCGA Include for Analysis]	Protocol REF	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
TCGA-A6-2684-01A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B02_1347414	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B02_1347414.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.76.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
TCGA-A6-3809-01A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A10_1347466	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A10_1347466.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.41.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
TCGA-A6-5659-10A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E01_1347428	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E01_1347428.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.89.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
TCGA-A6-6781-01A-22D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B06_1347452	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B06_1347452.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.157.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
TCGA-A6-2684-10A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A09_1347444	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A09_1347444.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.76.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
TCGA-A6-2677-01A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A02_1347366	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A02_1347366.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.28.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
TCGA-A6-6650-01A-11D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D09_1347446	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D09_1347446.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.123.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
TCGA-A6-3809-10A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E03_1347410	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E03_1347410.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.41.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
TCGA-A6-6780-01A-11D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D06_1347468	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D06_1347468.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.138.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
TCGA-A6-5659-01A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A06_1347488	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A06_1347488.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.89.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
TCGA-A6-6781-10A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B01_1347442	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B01_1347442.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.157.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
TCGA-A6-3810-01A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E05_1347358	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E05_1347358.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.41.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
TCGA-A6-5656-01A-21D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D04_1347464	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D04_1347464.hg18.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.138.2006.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg_2014041600	COAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.Level_3.2014041600.0.0	yes
