Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
GABRD	2563	broad.mit.edu	37	1	1961583	1961583	+	Silent	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:1961583C>A	uc001aip.2	+	9	1316	c.1221C>A	c.(1219-1221)GCC>GCA	p.A407A		NM_000815	NP_000806	O14764	GBRD_HUMAN	gamma-aminobutyric acid (GABA) A receptor, delta	407	Cytoplasmic (Probable).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;2.7e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.17e-24)|GBM - Glioblastoma multiforme(42;9.56e-08)|Colorectal(212;4.12e-05)|COAD - Colon adenocarcinoma(227;0.000194)|Kidney(185;0.00231)|BRCA - Breast invasive adenocarcinoma(365;0.00441)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		AGGGGGCAGCCCGCTCAGGAG	0.697000													78	57					1.17611e-34	1.65629e-34	1	0
PRDM16	63976	broad.mit.edu	37	1	3348575	3348575	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:3348575G>A	uc001akf.2	+	16	3647	c.3567G>A	c.(3565-3567)ATG>ATA	p.M1189I	PRDM16_uc001akc.2_Missense_Mutation_p.M1188I|PRDM16_uc001akd.2_Missense_Mutation_p.M1188I|PRDM16_uc001ake.2_Missense_Mutation_p.M1189I|PRDM16_uc009vlh.2_Missense_Mutation_p.M889I	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	1189	Mediates interaction with SKI and regulation of TGF-beta signaling.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		TGGAGCCGATGCCGACTTTTG	0.552000			T	EVI1	MDS|AML								17	70					0	0	0	0
PER3	8863	broad.mit.edu	37	1	7887874	7887874	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:7887874A>G	uc001aoo.2	+	17	3036	c.2861A>G	c.(2860-2862)TAT>TGT	p.Y954C	PER3_uc009vmg.1_Missense_Mutation_p.Y962C|PER3_uc009vmh.1_Missense_Mutation_p.Y955C|PER3_uc001aop.2_Missense_Mutation_p.Y962C|PER3_uc010nzw.1_Missense_Mutation_p.Y643C	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	954					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		CAAACTGAGTATGTAAGTGAT	0.443000													26	33					0	0	0	0
EPHA2	1969	broad.mit.edu	37	1	16464805	16464805	+	Missense_Mutation	SNP	C	T	T	rs139176878	byFrequency	TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:16464805C>T	uc001aya.1	-	4	1081	c.944G>A	c.(943-945)CGG>CAG	p.R315Q	EPHA2_uc010oca.1_Missense_Mutation_p.R315Q	NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	315	Extracellular (Potential).|Cys-rich.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	CTGAGGTGCCCGGAAGAAGCC	0.632000													13	20					0	0	0	0
ESPNP	284729	broad.mit.edu	37	1	17033900	17033900	+	Silent	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:17033900C>T	uc001azn.1	-	4	579	c.465G>A	c.(463-465)CTG>CTA	p.L155L	ESPNP_uc010ocj.1_Nonsense_Mutation_p.W127*	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CGTTCACTACCAGGATCTGGC	0.736000													3	5					0	0	0	0
CSMD2	114784	broad.mit.edu	37	1	34006187	34006187	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:34006187A>T	uc001bxn.1	-	59	9166	c.9137T>A	c.(9136-9138)CTG>CAG	p.L3046Q	CSMD2_uc001bxm.1_Missense_Mutation_p.L3190Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3046	Sushi 23.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CACCGCGGGCAGGGAGAGCTG	0.582000													23	108					0	0	0	0
KANK4	163782	broad.mit.edu	37	1	62740164	62740164	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:62740164A>C	uc001dah.3	-	3	989	c.612T>G	c.(610-612)TTT>TTG	p.F204L	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	204	Pro-rich.									ovary(3)|skin(2)|lung(1)	6						CTGCAGGTTCAAAGGTGCCAT	0.632000													16	86					0	0	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507574	74507574	+	Silent	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:74507574G>T	uc001dfy.3	-	7	1233	c.1041C>A	c.(1039-1041)ACC>ACA	p.T347T	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	347										ovary(2)	2						TCCTAAAACTGGTATCCAATT	0.308000													10	18					0.000442599	0.000452404	1	0
SLC44A5	204962	broad.mit.edu	37	1	75707693	75707693	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:75707693G>T	uc001dgu.2	-	9	669	c.525C>A	c.(523-525)AGC>AGA	p.S175R	SLC44A5_uc001dgt.2_Missense_Mutation_p.S175R|SLC44A5_uc001dgs.2_Missense_Mutation_p.S133R|SLC44A5_uc001dgr.2_Missense_Mutation_p.S133R|SLC44A5_uc010oqz.1_Missense_Mutation_p.S214R|SLC44A5_uc010ora.1_Missense_Mutation_p.S169R|SLC44A5_uc010orb.1_Missense_Mutation_p.S45R	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	175	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						TACAAGGTTTGCTGGGAAAAA	0.299000													13	66					0.000308642	0.000318503	1	0
LPHN2	23266	broad.mit.edu	37	1	82302736	82302736	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:82302736A>T	uc001dit.3	+	3	248	c.67A>T	c.(67-69)ACA>TCA	p.T23S	LPHN2_uc001dis.2_Missense_Mutation_p.T23S|LPHN2_uc001diu.2_Missense_Mutation_p.T23S|LPHN2_uc001div.2_Missense_Mutation_p.T23S|LPHN2_uc009wcd.2_Missense_Mutation_p.T23S	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	23					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		CTTACCAAATACAGAAGGTAA	0.318000													23	34					0	0	0	0
ODF2L	57489	broad.mit.edu	37	1	86820356	86820356	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:86820356C>A	uc001dll.1	-	16	1964	c.1624G>T	c.(1624-1626)GCA>TCA	p.A542S	ODF2L_uc001dlm.1_Missense_Mutation_p.A526S|ODF2L_uc001dln.2_Missense_Mutation_p.A513S|ODF2L_uc001dlo.2_Missense_Mutation_p.A382S|ODF2L_uc001dlp.2_Missense_Mutation_p.A489S|ODF2L_uc010osg.1_Missense_Mutation_p.A460S	NM_020729	NP_065780	Q9ULJ1	ODF2L_HUMAN	outer dense fiber of sperm tails 2-like isoform	542	Potential.					centrosome				ovary(1)	1				all cancers(265;0.0313)|Epithelial(280;0.0611)		TTATTTTCTGCGTCCATCTGT	0.313000													12	19					9.31168e-06	9.86122e-06	1	0
CCBL2	56267	broad.mit.edu	37	1	89418758	89418758	+	Silent	SNP	T	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:89418758T>A	uc001dmp.2	-	10	1319	c.942A>T	c.(940-942)GCA>GCT	p.A314A	CCBL2_uc001dmq.2_Silent_p.A280A|CCBL2_uc001dmr.2_Silent_p.A150A	NM_001008661	NP_001008661	Q6YP21	KAT3_HUMAN	kynurenine aminotransferase III isoform 1	314					biosynthetic process|kynurenine metabolic process|tryptophan catabolic process		cysteine-S-conjugate beta-lyase activity|kynurenine-glyoxylate transaminase activity|kynurenine-oxoglutarate transaminase activity|pyridoxal phosphate binding			ovary(1)	1		Lung NSC(277;0.123)		all cancers(265;0.0117)|Epithelial(280;0.0341)	L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	GTAAAGGAGTTGCACAAGTAT	0.338000													18	20					0	0	0	0
LPPR4	9890	broad.mit.edu	37	1	99771793	99771793	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:99771793G>A	uc001dse.2	+	7	1625	c.1519G>A	c.(1519-1521)GGC>AGC	p.G507S	LPPR4_uc010oue.1_Missense_Mutation_p.G449S	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	507							phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		AATCCAGCCTGGCGCTGTCCC	0.562000													130	294					0	0	0	0
AMPD2	271	broad.mit.edu	37	1	110172028	110172028	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:110172028C>A	uc009wfh.1	+	15	2482	c.1940C>A	c.(1939-1941)GCG>GAG	p.A647E	AMPD2_uc009wfg.1_RNA|AMPD2_uc001dyb.1_Missense_Mutation_p.A566E|AMPD2_uc001dyc.1_Missense_Mutation_p.A647E|AMPD2_uc010ovr.1_Missense_Mutation_p.A572E|AMPD2_uc001dyd.1_Missense_Mutation_p.A528E|AMPD2_uc001dye.1_5'UTR	NM_004037	NP_004028	Q01433	AMPD2_HUMAN	adenosine monophosphate deaminase 2 (isoform L)	647					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|breast(1)	3		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0425)|all cancers(265;0.0884)|Colorectal(144;0.109)|Epithelial(280;0.111)|LUSC - Lung squamous cell carcinoma(189;0.228)		CTGCCTGAGGCGTGGGTGGAG	0.562000													92	326					2.94851e-48	4.36866e-48	1	0
SEMA6C	10500	broad.mit.edu	37	1	151105901	151105901	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:151105901C>A	uc001ewu.2	-	19	2152	c.1852G>T	c.(1852-1854)GCC>TCC	p.A618S	SEMA6C_uc001ewv.2_Missense_Mutation_p.A650S|SEMA6C_uc001eww.2_Missense_Mutation_p.A610S|SEMA6C_uc010pcq.1_Intron	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	618	Helical; (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GAGACTGAGGCGCCCAGGGCA	0.726000													5	7					3.59834e-05	3.76137e-05	1	0
PIP5K1A	8394	broad.mit.edu	37	1	151210743	151210743	+	Splice_Site	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:151210743T>C	uc001exj.2	+	10	1681	c.1229_splice	c.e10+2	p.R410_splice	PIP5K1A_uc001exi.2_Splice_Site_p.R397_splice|PIP5K1A_uc010pcu.1_Intron|PIP5K1A_uc001exk.2_Splice_Site_p.R397_splice|PIP5K1A_uc010pcv.1_Splice_Site_p.R167_splice	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type						phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding			ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			GTCTTACAGGTGAGGAGCATA	0.433000													24	50					0	0	0	0
GATAD2B	57459	broad.mit.edu	37	1	153789912	153789912	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:153789912G>A	uc001fdb.3	-	6	1080	c.836C>T	c.(835-837)CCG>CTG	p.P279L		NM_020699	NP_065750	Q8WXI9	P66B_HUMAN	GATA zinc finger domain containing 2B	279						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_lung(78;1.34e-32)|Lung NSC(65;1.04e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AGGCTTAGGCGGGCCCCGCTG	0.527000													46	99					0	0	0	0
LMX1A	4009	broad.mit.edu	37	1	165322430	165322430	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:165322430C>A	uc001gcy.1	-	2	367	c.146G>T	c.(145-147)CGG>CTG	p.R49L	LMX1A_uc001gcz.1_Missense_Mutation_p.R49L	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	49	LIM zinc-binding 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					GTCGTTGAGCCGCAGCAGAAA	0.612000													16	36					3.32936e-07	3.62082e-07	1	0
CFH	3075	broad.mit.edu	37	1	196648897	196648897	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:196648897G>T	uc001gtj.3	+	6	1004	c.764G>T	c.(763-765)GGA>GTA	p.G255V	CFH_uc001gti.3_Missense_Mutation_p.G255V|CFH_uc009wyw.2_Missense_Mutation_p.G255V|CFH_uc009wyx.2_Missense_Mutation_p.G191V	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	255	Sushi 4.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						ACTGAATCTGGATGGCGTCCG	0.294000													14	56					0.000422831	0.000434951	1	0
DISP1	84976	broad.mit.edu	37	1	223165426	223165426	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:223165426A>G	uc001hnu.1	+	6	1010	c.863A>G	c.(862-864)AAG>AGG	p.K288R		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	288					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AACTTCCACAAGGACAGCTTT	0.403000													18	48					0	0	0	0
KIAA1383	54627	broad.mit.edu	37	1	232941067	232941067	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:232941067G>A	uc001hvh.2	+	1	430	c.298G>A	c.(298-300)GCT>ACT	p.A100T		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	Error:Variant_position_missing_in_Q9P2G4_after_alignment										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				CCCGAGACCCGCTGGAGCGCT	0.562000													27	68					0	0	0	0
C1orf31	388753	broad.mit.edu	37	1	234509385	234509385	+	5'Flank	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:234509385G>T	uc001hwc.2	+						C1orf31_uc001hwb.2_5'UTR	NM_001012985	NP_001013003	Q5JTJ3	CA031_HUMAN	hypothetical protein LOC388753							mitochondrion	cytochrome-c oxidase activity				0	Ovarian(103;0.0339)	all_cancers(173;0.241)|Prostate(94;0.0353)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			GTTTCCTCCCGTCGACATCGA	0.687000													83	194					1.76565e-42	2.56895e-42	1	0
RYR2	6262	broad.mit.edu	37	1	237494248	237494248	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:237494248A>C	uc001hyl.1	+	3	359	c.239A>C	c.(238-240)GAG>GCG	p.E80A		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	80	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GCGCTGCAGGAGATGCTGGCT	0.498000													41	104					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237806679	237806679	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:237806679C>A	uc001hyl.1	+	48	7394	c.7274C>A	c.(7273-7275)TCC>TAC	p.S2425Y		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2425	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ATTTTGAGATCCCTCATTCCC	0.423000													42	111					9.84934e-19	1.23787e-18	1	0
PFKP	5214	broad.mit.edu	37	10	3146081	3146081	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr10:3146081T>C	uc001igp.2	+	5	601	c.565T>C	c.(565-567)TCC>CCC	p.S189P	PFKP_uc001igq.2_Missense_Mutation_p.S181P|PFKP_uc009xhr.2_Missense_Mutation_p.S151P|PFKP_uc009xhs.1_5'Flank	NM_002627	NP_002618	Q01813	K6PP_HUMAN	phosphofructokinase, platelet	189					glycolysis	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|metal ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3				GBM - Glioblastoma multiforme(1;0.000975)|all cancers(11;0.00351)|Epithelial(11;0.142)		CGGCACGGACTCCGCCCTGCA	0.632000													11	56					0	0	0	0
SLC39A12	221074	broad.mit.edu	37	10	18250514	18250514	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr10:18250514T>A	uc001ipo.2	+	3	539	c.266T>A	c.(265-267)TTT>TAT	p.F89Y	SLC39A12_uc001ipn.2_Missense_Mutation_p.F89Y|SLC39A12_uc001ipp.2_Missense_Mutation_p.F89Y|SLC39A12_uc010qck.1_Translation_Start_Site	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	89	Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						CCACAGTGCTTTGAACCAGAT	0.368000													9	29					0	0	0	0
ARMC4	55130	broad.mit.edu	37	10	28101547	28101547	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr10:28101547A>T	uc009xky.2	-	20	3127	c.3029T>A	c.(3028-3030)CTG>CAG	p.L1010Q	ARMC4_uc010qds.1_Missense_Mutation_p.W576R|ARMC4_uc010qdt.1_Missense_Mutation_p.L702Q|ARMC4_uc001itz.2_Missense_Mutation_p.L1010Q	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	1010	ARM 10.						binding			ovary(4)|skin(2)	6						AACCATATCCAGTAGAAGCTG	0.423000													22	39					0	0	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687344	68687344	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr10:68687344C>T	uc001jmz.1	+	2	1220	c.670C>T	c.(670-672)CTT>TTT	p.L224F	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.L224F	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	224	Extracellular (Potential).|LRR 7.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CAACCTGGCCCTTTTTCCAAG	0.463000													39	60					0	0	0	0
KIAA1274	27143	broad.mit.edu	37	10	72300939	72300939	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr10:72300939G>A	uc001jrd.3	+	16	2271	c.1990G>A	c.(1990-1992)GGC>AGC	p.G664S	KIAA1274_uc001jre.3_5'UTR	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	664										ovary(2)|central_nervous_system(1)	3						CTGCCTCAGCGGCCAGGGCCG	0.607000													23	92					0	0	0	0
ZNF518A	9849	broad.mit.edu	37	10	97916239	97916239	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr10:97916239A>C	uc001klp.2	+	6	1017	c.160A>C	c.(160-162)AAA>CAA	p.K54Q	ZNF518A_uc001klo.1_Intron|ZNF518A_uc001klq.2_Missense_Mutation_p.K54Q|ZNF518A_uc001klr.2_Missense_Mutation_p.K54Q	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	54					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		TGATTTGCCAAAAATAAATAT	0.294000													21	16					0	0	0	0
ZDHHC16	84287	broad.mit.edu	37	10	99213336	99213336	+	Silent	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr10:99213336T>C	uc001knj.2	+	7	955	c.606T>C	c.(604-606)TCT>TCC	p.S202S	ZDHHC16_uc001knp.2_Intron|ZDHHC16_uc001knk.2_Silent_p.S202S|ZDHHC16_uc001knl.2_Silent_p.S202S|ZDHHC16_uc001knm.2_Silent_p.S137S|ZDHHC16_uc001knn.2_Intron|ZDHHC16_uc010qow.1_Silent_p.S202S|ZDHHC16_uc009xvq.2_RNA|ZDHHC16_uc001kno.2_Silent_p.S202S|ZDHHC16_uc009xvr.2_Silent_p.S202S	NM_198046	NP_932163	Q969W1	ZDH16_HUMAN	Abl-philin 2 isoform 1	202	DHHC-type.|Helical; (Potential).				apoptosis	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)	1		Colorectal(252;0.0846)		Epithelial(162;5.81e-10)|all cancers(201;4.19e-08)		ACTTCTTCTCTTTCTGCTTTT	0.468000													65	113					0	0	0	0
GFRA1	2674	broad.mit.edu	37	10	117849305	117849305	+	Missense_Mutation	SNP	C	A	A	rs77098230		TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr10:117849305C>A	uc001lcj.2	-	9	1842	c.1144G>T	c.(1144-1146)GGG>TGG	p.G382W	GFRA1_uc001lci.2_Missense_Mutation_p.G377W|GFRA1_uc009xyr.2_Missense_Mutation_p.G377W	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	382					axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		TTCTCAGACCCTGCTGGCCCC	0.577000													75	99					5.88917e-42	8.49197e-42	1	0
CPXM2	119587	broad.mit.edu	37	10	125539756	125539756	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr10:125539756T>C	uc001lhk.1	-	7	1230	c.905A>G	c.(904-906)TAT>TGT	p.Y302C	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	302					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CCGGCGGTGATAATAATTATT	0.453000													42	61					0	0	0	0
PKP3	11187	broad.mit.edu	37	11	396883	396883	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:396883A>T	uc001lpc.2	+	3	458	c.382A>T	c.(382-384)AGC>TGC	p.S128C		NM_007183	NP_009114	Q9Y446	PKP3_HUMAN	plakophilin 3	128					cell adhesion	desmosome|nucleus	binding			skin(1)	1		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CGTGGATCTGAGCTGCAGTCG	0.726000													10	21					0	0	0	0
LRDD	55367	broad.mit.edu	37	11	800406	800406	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:800406G>A	uc001lro.1	-	13	2229	c.2087C>T	c.(2086-2088)TCG>TTG	p.S696L	SLC25A22_uc009yci.2_5'Flank|SLC25A22_uc001lrj.2_5'Flank|LRDD_uc009yck.1_RNA|LRDD_uc001lrk.1_Missense_Mutation_p.S696L|LRDD_uc001lrl.1_Missense_Mutation_p.S539L|LRDD_uc001lrm.1_Missense_Mutation_p.S383L|LRDD_uc001lrn.1_Missense_Mutation_p.S539L|LRDD_uc001lrp.1_Missense_Mutation_p.S358L	NM_145886	NP_665893	Q9HB75	PIDD_HUMAN	leucine rich repeat and death domain containing	696					apoptosis|signal transduction	cytoplasm|nucleus	death receptor binding				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CTTCAGGTGCGAGTAGAAGAC	0.637000													34	85					0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1268755	1268755	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:1268755C>A	uc009ycr.1	+	50	12355	c.12229C>A	c.(12229-12231)CGC>AGC	p.R4077S	MUC5B_uc001ltb.2_Missense_Mutation_p.R3552S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3549	7 X Cys-rich subdomain repeats.|Thr-rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CAGCAAGACCCGCACCTCGAC	0.687000													61	166					2.56221e-42	3.71119e-42	1	0
OR52A5	390054	broad.mit.edu	37	11	5153280	5153280	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:5153280T>C	uc010qyx.1	-	1	593	c.593A>G	c.(592-594)AAC>AGC	p.N198S		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	198	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		ATATATCTTGTTGACTCGGAT	0.398000													58	80					0	0	0	0
OR52A1	23538	broad.mit.edu	37	11	5173436	5173437	+	Missense_Mutation	DNP	CG	GA	GA			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:5173436_5173437CG>GA	uc010qyy.1	-	1	163_164	c.163_164CG>TC	c.(163-165)CGC>TCC	p.R55S		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATGGAGACTGCGCTCAGATTTG	0.446000													18	42					0	0	0	0
NLRP14	338323	broad.mit.edu	37	11	7064949	7064949	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:7064949G>T	uc001mfb.1	+	4	2015	c.1692G>T	c.(1690-1692)ATG>ATT	p.M564I		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	564					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		TTCAGTGTATGGAAGTATTAG	0.368000													11	42					9.31168e-06	9.86122e-06	1	0
SLC17A6	57084	broad.mit.edu	37	11	22396327	22396327	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:22396327C>A	uc001mqk.2	+	9	1481	c.1068C>A	c.(1066-1068)CAC>CAA	p.H356Q		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	356	Helical; (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						CTGTGCCACACTTAGTAATGA	0.363000													66	203					2.64105e-45	3.89525e-45	1	0
ELP4	26610	broad.mit.edu	37	11	31531491	31531491	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:31531491C>T	uc001mtb.2	+	1	195	c.160C>T	c.(160-162)CCG>TCG	p.P54S	IMMP1L_uc001msy.1_5'Flank|IMMP1L_uc001msz.1_5'Flank|ELP4_uc001mta.1_RNA|ELP4_uc001mtc.2_Missense_Mutation_p.P54S|ELP4_uc010rdz.1_Missense_Mutation_p.P54S|IMMP1L_uc009yjo.2_5'Flank|IMMP1L_uc009yjp.2_5'Flank	NM_019040	NP_061913	Q96EB1	ELP4_HUMAN	elongation protein 4 homolog	54					histone acetylation|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|Elongator holoenzyme complex|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|prostate(1)	3	Lung SC(675;0.225)					GGGCACGCGACCGTCGGTGCG	0.637000													33	123					0	0	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137050	40137050	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:40137050T>G	uc001mxa.1	-	2	2757	c.793A>C	c.(793-795)AAC>CAC	p.N265H	LRRC4C_uc001mxc.1_Missense_Mutation_p.N261H|LRRC4C_uc001mxd.1_Missense_Mutation_p.N261H|LRRC4C_uc001mxb.1_Missense_Mutation_p.N261H	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	265	LRR 8.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				GACTGAAGGTTGTCAAAGGCA	0.453000													67	138					0	0	0	0
Unknown	0	broad.mit.edu	37	11	43284617	43284617	+	RNA	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:43284617C>T	uc001mxe.1	-	2		c.319G>A								Homo sapiens cDNA FLJ44864 fis, clone BRALZ2013621, moderately similar to Heterogeneous nuclear ribonucleoprotein K.																		AGCCTCAATTCGCAATCAAAG	0.398000													5	19					0	0	0	0
OR5D16	390144	broad.mit.edu	37	11	55606284	55606284	+	Silent	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:55606284C>T	uc010rio.1	+	1	57	c.57C>T	c.(55-57)TTC>TTT	p.F19F		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				TCTTGGGCTTCTCAGATTACC	0.413000													38	85					0	0	0	0
OR5W2	390148	broad.mit.edu	37	11	55682057	55682057	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:55682057A>T	uc010rir.1	-	1	2	c.2T>A	c.(1-3)ATG>AAG	p.M1K		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTCCCAGTCCATTCTTCCTTG	0.343000													7	27					0	0	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798050	55798050	+	Silent	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:55798050T>C	uc010riw.1	+	1	156	c.156T>C	c.(154-156)AAT>AAC	p.N52N		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					TTAATATTAATTCAAGCCTTC	0.328000													13	20					0	0	0	0
OR5R1	219479	broad.mit.edu	37	11	56185101	56185101	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:56185101G>A	uc010rji.1	-	1	608	c.608C>T	c.(607-609)GCT>GTT	p.A203V		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	203	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					ATCAAAGCCAGCAAAGGCAAA	0.438000													20	52					0	0	0	0
OR9G4	283189	broad.mit.edu	37	11	56511121	56511121	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:56511121C>T	uc010rjo.1	-	1	167	c.167G>A	c.(166-168)GGA>GAA	p.G56E		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	56	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						GGTCATGTTTCCTGACAAGGT	0.403000													26	41					0	0	0	0
OR10W1	81341	broad.mit.edu	37	11	58034437	58034437	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:58034437C>A	uc001nmq.1	-	1	1296	c.894G>T	c.(892-894)AGG>AGT	p.R298S		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				AAAGGCAGTTCCTGGTAAGAA	0.493000													54	75					6.26901e-30	8.50794e-30	1	0
PATL1	219988	broad.mit.edu	37	11	59420459	59420459	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:59420459C>T	uc001noe.3	-	10	1297	c.1154G>A	c.(1153-1155)AGA>AAA	p.R385K	PATL1_uc009yms.1_Missense_Mutation_p.R355K|PATL1_uc010rkw.1_Missense_Mutation_p.R90K	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	385	Region N; interaction with decapping machinery.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						GTGACTTCCTCTATCTCCCGC	0.433000													40	195					0	0	0	0
PRCP	5547	broad.mit.edu	37	11	82571077	82571077	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:82571077C>A	uc001ozs.2	-	2	364	c.251G>T	c.(250-252)GGA>GTA	p.G84V	PRCP_uc001ozr.2_Missense_Mutation_p.G105V	NM_005040	NP_005031	P42785	PCP_HUMAN	prolylcarboxypeptidase isoform 1 preproprotein	84					blood coagulation, intrinsic pathway|proteolysis	lysosome|plasma membrane	protein binding|serine-type carboxypeptidase activity			skin(1)	1						AAGTATTGATCCACCATTTTT	0.338000													11	22					1.08611e-07	1.19731e-07	1	0
ZBTB16	7704	broad.mit.edu	37	11	113934426	113934426	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:113934426C>A	uc001pop.2	+	2	668	c.404C>A	c.(403-405)GCC>GAC	p.A135D	ZBTB16_uc001poo.1_Missense_Mutation_p.A135D|ZBTB16_uc001poq.2_Missense_Mutation_p.A135D	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	135					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		GACACGGAGGCCACCATGGCC	0.582000													8	29					2.17888e-05	2.28499e-05	1	0
FAM55D	54827	broad.mit.edu	37	11	114450889	114450889	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:114450889C>T	uc001ppc.2	-	5	1245	c.1064G>A	c.(1063-1065)CGC>CAC	p.R355H	FAM55D_uc001ppd.2_Missense_Mutation_p.R71H	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	355						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		CATCCACTGGCGGATCGTGGA	0.418000													34	143					0	0	0	0
ABCG4	64137	broad.mit.edu	37	11	119031672	119031672	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:119031672C>A	uc001pvs.2	+	15	2133	c.1797C>A	c.(1795-1797)TTC>TTA	p.F599L	ABCG4_uc009zar.2_Missense_Mutation_p.F599L	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	599	Extracellular (Potential).|ABC transmembrane type-2.				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		GCTGCCCGTTCCGGGAGCCAC	0.577000													18	24					0.000566183	0.0005769	1	0
TECTA	7007	broad.mit.edu	37	11	121008261	121008261	+	Silent	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:121008261C>T	uc010rzo.1	+	10	3073	c.3073C>T	c.(3073-3075)CTA>TTA	p.L1025L		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1025	TIL 2.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GGGCTATGCTCTACTGGGCAG	0.577000													25	58					0	0	0	0
BSX	390259	broad.mit.edu	37	11	122850143	122850143	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:122850143G>T	uc010rzs.1	-	2	285	c.285C>A	c.(283-285)TTC>TTA	p.F95L		NM_001098169	NP_001091639	Q3C1V8	BSH_HUMAN	brain specific homeobox	95											0		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0361)		GCGGGTGCGGGAACAGCGCTG	0.577000													24	61					4.4004e-07	4.76956e-07	1	0
LOC341056	341056	broad.mit.edu	37	11	122888570	122888570	+	RNA	SNP	G	T	T	rs7933723	by1000genomes	TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:122888570G>T	uc010rzt.1	+	1		c.297G>T				NR_027288				full-length cDNA clone CS0DC021YJ17 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0						ATCTCCAGAAGAACCCGGAGC	0.502000													12	56					2.61681e-11	3.0295e-11	1	0
OR8B12	219858	broad.mit.edu	37	11	124412750	124412750	+	Silent	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:124412750G>C	uc010sam.1	-	1	801	c.801C>G	c.(799-801)CTC>CTG	p.L267L		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		TCCCTTGCTCGAGGGGCAGGA	0.438000													8	38					0	0	0	0
PANX3	116337	broad.mit.edu	37	11	124481559	124481559	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:124481559G>A	uc001qah.2	+	1	107	c.107G>A	c.(106-108)CGG>CAG	p.R36Q		NM_052959	NP_443191	Q96QZ0	PANX3_HUMAN	pannexin 3	36	Cytoplasmic (Potential).				protein hexamerization	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0219)		CCCCTGGACCGGATAGTCAAG	0.597000													27	51					0	0	0	0
ROBO3	64221	broad.mit.edu	37	11	124743986	124743986	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:124743986G>T	uc001qbc.2	+	12	1997	c.1805G>T	c.(1804-1806)TGG>TTG	p.W602L	ROBO3_uc010saq.1_5'Flank|ROBO3_uc001qbd.2_5'Flank|ROBO3_uc010sar.1_5'Flank|ROBO3_uc001qbe.2_5'Flank	NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	602	Fibronectin type-III 1.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		GGCAACACATGGCGTACTGTG	0.552000													99	246					5.97022e-63	9.05343e-63	1	0
GLB1L2	89944	broad.mit.edu	37	11	134217282	134217282	+	Silent	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:134217282G>T	uc001qhp.2	+	5	701	c.513G>T	c.(511-513)GTG>GTT	p.V171V	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	171					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		CCGAAGCAGTGGACCTTTATT	0.512000													153	298					1.57672e-70	2.41365e-70	1	0
TAS2R31	259290	broad.mit.edu	37	12	11183120	11183120	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr12:11183120G>A	uc001qzo.1	-	1	887	c.815C>T	c.(814-816)CCT>CTT	p.P272L	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176885	NP_795366	P59538	T2R31_HUMAN	taste receptor, type 2, member 31	272	Helical; Name=7; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity				0						GTGGATTGAAGGATAGCTGAA	0.418000													86	175					0	0	0	0
TAS2R42	353164	broad.mit.edu	37	12	11339153	11339153	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr12:11339153C>T	uc001qzr.1	-	1	391	c.391G>A	c.(391-393)GTT>ATT	p.V131I	PRB4_uc001qzf.1_Intron	NM_181429	NP_852094	Q7RTR8	T2R42_HUMAN	taste receptor, type 2, member 42	131	Helical; Name=3; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.0455)			AGAAGCATAACAATCATTCCG	0.368000													13	34					0	0	0	0
LRRK2	120892	broad.mit.edu	37	12	40671795	40671795	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr12:40671795A>T	uc001rmg.3	+	17	2168	c.2047A>T	c.(2047-2049)ATC>TTC	p.I683F	LRRK2_uc001rmh.1_Missense_Mutation_p.I305F	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	683					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				GTCTTCCAATATCATGGAACA	0.333000													19	36					0	0	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43763140	43763140	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr12:43763140G>A	uc010skx.1	-	37	5491	c.5491C>T	c.(5491-5493)CCA>TCA	p.P1831S		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1831	GON.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GTGGCAAATGGAACTGCATTT	0.328000													3	8					0	0	0	0
KRT79	338785	broad.mit.edu	37	12	53227957	53227957	+	Missense_Mutation	SNP	G	A	A	rs142757937	byFrequency	TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr12:53227957G>A	uc001sbb.2	-	1	121	c.88C>T	c.(88-90)CGC>TGC	p.R30C		NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	30	Head.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						AAGCTGGTGCGGGCCTGGGAC	0.647000													10	48					0	0	0	0
RASSF3	283349	broad.mit.edu	37	12	65078646	65078646	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr12:65078646C>T	uc001ssd.2	+	2	311	c.191C>T	c.(190-192)GCA>GTA	p.A64V	RASSF3_uc009zqn.2_RNA|RASSF3_uc001sse.2_5'UTR	NM_178169	NP_835463	Q86WH2	RASF3_HUMAN	Ras association (RalGDS/AF-6) domain family	64					signal transduction	cytoplasm|microtubule	identical protein binding				0			Lung(2;0.00133)|LUAD - Lung adenocarcinoma(6;0.0665)|LUSC - Lung squamous cell carcinoma(43;0.132)	GBM - Glioblastoma multiforme(28;0.0611)		TACAACTTAGCAGTCACAGAC	0.358000													12	28					0	0	0	0
GLIPR1L2	144321	broad.mit.edu	37	12	75804291	75804291	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr12:75804291A>T	uc001sxr.1	+	2	320	c.312A>T	c.(310-312)CAA>CAT	p.Q104H	GLIPR1L2_uc001sxp.1_Missense_Mutation_p.Q104H|GLIPR1L2_uc001sxq.1_Translation_Start_Site	NM_152436	NP_689649	Q4G1C9	GRPL2_HUMAN	GLI pathogenesis-related 1 like 2	104						integral to membrane				ovary(1)	1						TTTATTTACAAGATGTACAAA	0.348000													19	57					0	0	0	0
NAV3	89795	broad.mit.edu	37	12	78444926	78444926	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr12:78444926G>A	uc001syp.2	+	11	2688	c.2515G>A	c.(2515-2517)GGG>AGG	p.G839R	NAV3_uc001syo.2_Missense_Mutation_p.G839R|NAV3_uc010sub.1_Missense_Mutation_p.G339R	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	839						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CATCAACAGTGGGTAAGTAAC	0.448000										HNSCC(70;0.22)			29	45					0	0	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100491235	100491235	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr12:100491235C>T	uc001tgq.2	-	6	806	c.577G>A	c.(577-579)GAT>AAT	p.D193N	UHRF1BP1L_uc001tgr.2_Missense_Mutation_p.D193N	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	193										ovary(2)	2						TGGGTGGCATCTGCCTCTATT	0.358000													16	17					0	0	0	0
SSH1	54434	broad.mit.edu	37	12	109186136	109186136	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr12:109186136G>C	uc001tnm.2	-	14	1906	c.1819C>G	c.(1819-1821)CAG>GAG	p.Q607E	SSH1_uc001tnl.2_Missense_Mutation_p.Q295E|SSH1_uc010sxg.1_Missense_Mutation_p.Q618E|SSH1_uc001tnn.3_Missense_Mutation_p.Q607E	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	607					actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						TGATCGAGCTGGGTTGGAAGC	0.617000													17	75					0	0	0	0
FRY	10129	broad.mit.edu	37	13	32757164	32757164	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr13:32757164G>T	uc001utx.2	+	24	3543	c.3047G>T	c.(3046-3048)AGA>ATA	p.R1016I	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1016					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CTGGAAAGAAGACCAGAGGTA	0.318000													9	6					5.4927e-09	6.24698e-09	1	0
PCDH17	27253	broad.mit.edu	37	13	58207782	58207782	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr13:58207782G>A	uc001vhq.1	+	1	1994	c.1102G>A	c.(1102-1104)GGC>AGC	p.G368S	PCDH17_uc010aec.1_Missense_Mutation_p.G368S	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	368	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CGCCCCTCCCGGCACCGTCAT	0.627000													34	28					0	0	0	0
MYO16	23026	broad.mit.edu	37	13	109793138	109793138	+	Silent	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr13:109793138C>T	uc001vqt.1	+	32	4638	c.4512C>T	c.(4510-4512)CCC>CCT	p.P1504P	MYO16_uc010agk.1_Silent_p.P1526P	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1504	Pro-rich.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CCTGCTCCCCCGCCTCCGACG	0.726000													14	12					0	0	0	0
ATP11A	23250	broad.mit.edu	37	13	113474237	113474237	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr13:113474237A>T	uc001vsi.3	+	8	786	c.698A>T	c.(697-699)TAC>TTC	p.Y233F	ATP11A_uc001vsj.3_Missense_Mutation_p.Y233F|ATP11A_uc001vsm.1_Missense_Mutation_p.Y109F	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	233	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				ATCAACGTTTACAGTGACCTG	0.617000													27	39					0	0	0	0
SLC8A3	6547	broad.mit.edu	37	14	70518747	70518747	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr14:70518747G>T	uc001xly.2	-	5	2745	c.1991C>A	c.(1990-1992)CCC>CAC	p.P664H	SLC8A3_uc001xlu.2_Missense_Mutation_p.P21H|SLC8A3_uc001xlv.2_Missense_Mutation_p.P35H|SLC8A3_uc001xlw.2_Missense_Mutation_p.P661H|SLC8A3_uc001xlx.2_Missense_Mutation_p.P662H|SLC8A3_uc001xlz.2_Missense_Mutation_p.P658H|SLC8A3_uc010ara.2_RNA|SLC8A3_uc001xma.2_Missense_Mutation_p.P21H	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	664	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TTCTAGTTTGGGGTGTTCACC	0.383000													39	40					8.20599e-20	1.04352e-19	1	0
ESRRB	2103	broad.mit.edu	37	14	76949004	76949004	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr14:76949004C>T	uc001xsq.1	+	5	756	c.689C>T	c.(688-690)CCT>CTT	p.P230L	ESRRB_uc001xsr.2_Missense_Mutation_p.P230L|ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	230						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		ATGCCTCCCCCTGGTATGCCT	0.557000													60	52					0	0	0	0
KCNK10	54207	broad.mit.edu	37	14	88729659	88729659	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr14:88729659C>G	uc001xwo.2	-	2	731	c.274G>C	c.(274-276)GCA>CCA	p.A92P	KCNK10_uc001xwm.2_Missense_Mutation_p.A97P|KCNK10_uc001xwn.2_Missense_Mutation_p.A97P	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	92	Helical; (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						TGCTCCAATGCCCGGAAGACA	0.572000													17	86					0	0	0	0
KIAA1409	57578	broad.mit.edu	37	14	94109931	94109931	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr14:94109931G>A	uc001ybv.1	+	33	5667	c.5584G>A	c.(5584-5586)GAA>AAA	p.E1862K	KIAA1409_uc001ybs.1_Missense_Mutation_p.E1840K	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2017						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CATTCTTGAAGAATACGATGA	0.468000													72	39					0	0	0	0
KIAA0284	283638	broad.mit.edu	37	14	105361114	105361114	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr14:105361114G>C	uc010axb.2	+	19	4708	c.4484G>C	c.(4483-4485)AGC>ACC	p.S1495T	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Missense_Mutation_p.S1425T|KIAA0284_uc001yps.2_Missense_Mutation_p.S1436T|KIAA0284_uc001ypt.2_Missense_Mutation_p.S163T	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	1530						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		AGCTTGGCCAGCTCTGCACAG	0.682000													24	121					0	0	0	0
GABRB3	2562	broad.mit.edu	37	15	26866546	26866546	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr15:26866546C>A	uc001zaz.2	-	4	518	c.376G>T	c.(376-378)GAC>TAC	p.D126Y	GABRB3_uc010uae.1_Missense_Mutation_p.D41Y|GABRB3_uc001zba.2_Missense_Mutation_p.D126Y|GABRB3_uc001zbb.2_Missense_Mutation_p.D182Y|GABRB3_uc001zbc.2_RNA	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	126	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GACTTTTTGTCATTTAAGAAA	0.493000													34	62					8.73648e-17	1.07296e-16	1	0
OCA2	4948	broad.mit.edu	37	15	28235776	28235776	+	Silent	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr15:28235776C>A	uc001zbh.3	-	10	1172	c.1062G>T	c.(1060-1062)CTG>CTT	p.L354L	OCA2_uc010ayv.2_Intron	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	354	Helical; (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		GCATGGCCGCCAGAGTTCTGT	0.557000									Oculocutaneous_Albinism				120	176					1.20306e-52	1.79073e-52	1	0
PLCB2	5330	broad.mit.edu	37	15	40584265	40584265	+	Silent	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr15:40584265C>T	uc001zld.2	-	23	2827	c.2526G>A	c.(2524-2526)GAG>GAA	p.E842E	PLCB2_uc001zlc.2_5'Flank|PLCB2_uc010bbo.2_Silent_p.E838E|PLCB2_uc010ucm.1_Silent_p.E842E	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	842					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CAACACAGACCTCAGGCAGAC	0.597000													29	55					0	0	0	0
SECISBP2L	9728	broad.mit.edu	37	15	49327610	49327610	+	Missense_Mutation	SNP	C	T	T	rs138614543		TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr15:49327610C>T	uc001zxe.1	-	3	583	c.449G>A	c.(448-450)CGT>CAT	p.R150H	SECISBP2L_uc001zxd.1_Missense_Mutation_p.R150H|SECISBP2L_uc010bep.1_5'UTR|SECISBP2L_uc010beq.1_Missense_Mutation_p.R150H	NM_014701	NP_055516	Q93073	SBP2L_HUMAN	SECIS binding protein 2-like	150										breast(1)|skin(1)	2						CTGACTTGGACGCTCAGTGCA	0.468000													30	87					0	0	0	0
NARG2	79664	broad.mit.edu	37	15	60760373	60760373	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr15:60760373G>A	uc002agp.2	-	4	530	c.295C>T	c.(295-297)CGT>TGT	p.R99C	NARG2_uc002ago.2_Intron|NARG2_uc010bgk.2_Missense_Mutation_p.R99C|NARG2_uc002agr.1_Missense_Mutation_p.R99C	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	99						nucleus				ovary(1)|lung(1)	2						TGTGAGAAACGAGAGAAACGA	0.393000													19	29					0	0	0	0
TLN2	83660	broad.mit.edu	37	15	63014680	63014680	+	Silent	SNP	G	A	A	rs148420994	byFrequency	TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr15:63014680G>A	uc002alb.3	+	23	3120	c.3120G>A	c.(3118-3120)TCG>TCA	p.S1040S		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1040	Ala-rich.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						GTACCGCCTCGCAGAAGGCAA	0.617000													12	39					0	0	0	0
CLPX	10845	broad.mit.edu	37	15	65447147	65447147	+	Silent	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr15:65447147C>T	uc002aom.2	-	11	1656	c.1584G>A	c.(1582-1584)CAG>CAA	p.Q528Q	CLPX_uc010uiu.1_RNA	NM_006660	NP_006651	O76031	CLPX_HUMAN	ClpX caseinolytic protease X homolog precursor	528					protein folding|proteolysis involved in cellular protein catabolic process	mitochondrial endopeptidase Clp complex|mitochondrial inner membrane|mitochondrial nucleoid	ATP binding|ATPase activity|metal ion binding|peptidase activator activity|unfolded protein binding				0						AGGCCTGGTACTGAGGAATAA	0.343000													20	19					0	0	0	0
CHRNA5	1138	broad.mit.edu	37	15	78880684	78880684	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr15:78880684A>T	uc002bdy.2	+	4	494	c.332A>T	c.(331-333)AAC>ATC	p.N111I	CHRNA5_uc002bdz.2_Missense_Mutation_p.N111I	NM_000745	NP_000736	P30532	ACHA5_HUMAN	cholinergic receptor, nicotinic, alpha 5	111	Extracellular (Potential).				behavioral response to nicotine	cell junction|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TTAAGATGGAACCCTGATGAC	0.308000													13	30					0	0	0	0
C15orf51	196968	broad.mit.edu	37	15	100340420	100340420	+	RNA	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr15:100340420G>T	uc010urx.1	-	4		c.507C>A			C15orf51_uc010ury.1_RNA|uc002bvp.2_5'Flank|C15orf51_uc010urz.1_RNA|C15orf51_uc010bow.2_RNA|uc002bvt.1_5'Flank	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						CCACGCGAGCGCAGGTTGGAC	0.602000													11	16					6.31663e-08	7.05976e-08	1	0
SCNN1B	6338	broad.mit.edu	37	16	23364139	23364139	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr16:23364139A>G	uc002dln.2	+	3	505	c.329A>G	c.(328-330)CAT>CGT	p.H110R		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	110	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	AAAATCAAGCATTTGCTGAAG	0.502000													44	80					0	0	0	0
Unknown	0	broad.mit.edu	37	16	28354084	28354084	+	Silent	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr16:28354084G>C	uc010vcq.1	-	7	1121	c.1068C>G	c.(1066-1068)CCC>CCG	p.P356P	uc010vcr.1_Silent_p.P374P					SubName: Full=LOC728741 protein;																		TCCGCCTCTTGGGTTTCGGTG	0.249000													4	7					0	0	0	0
SETD1A	9739	broad.mit.edu	37	16	30976967	30976967	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr16:30976967G>C	uc002ead.1	+	8	2451	c.1765G>C	c.(1765-1767)GAC>CAC	p.D589H		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	589	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						CTCCGACGACGACCGGGGTGG	0.557000													23	62					0	0	0	0
STX4	6810	broad.mit.edu	37	16	31051061	31051061	+	Silent	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr16:31051061C>T	uc002eal.2	+	10	1055	c.831C>T	c.(829-831)GCC>GCT	p.A277A	STX4_uc002eak.2_Silent_p.A275A|STX4_uc002eam.2_Silent_p.A199A|uc002ean.1_5'Flank	NM_004604	NP_004595	Q12846	STX4_HUMAN	syntaxin 4	277	Helical; Anchor for type IV membrane protein; (Potential).|Interaction with CENPF (By similarity).				intracellular protein transport|platelet activation|post-Golgi vesicle-mediated transport	basolateral plasma membrane|cell surface|cytosol|integral to membrane|plasma membrane enriched fraction|specific granule|vacuole	SNAP receptor activity				0						TCTTGATTGCCATCTGTGTGT	0.582000													65	191					0	0	0	0
IRX3	79191	broad.mit.edu	37	16	54319493	54319493	+	Silent	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr16:54319493C>T	uc002eht.1	-	2	716	c.300G>A	c.(298-300)GGG>GGA	p.G100G		NM_024336	NP_077312	P78415	IRX3_HUMAN	iroquois homeobox 3	100					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GATGCTGCACCCCGGGGCTGT	0.692000													2	4					0	0	0	0
CES1	1066	broad.mit.edu	37	16	55850844	55850844	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr16:55850844G>T	uc002eim.2	-	8	1042	c.934C>A	c.(934-936)CCC>ACC	p.P312T	CES1_uc010ccf.2_5'UTR|CES1_uc002eil.2_Missense_Mutation_p.P313T|CES1_uc002ein.2_Missense_Mutation_p.P312T	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	312					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	ACCTCTCTGGGGTCTCCCTGT	0.468000													78	172					2.98122e-55	4.47877e-55	1	0
HYDIN	54768	broad.mit.edu	37	16	71026054	71026054	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr16:71026054G>T	uc002ezr.2	-	24	3832	c.3704C>A	c.(3703-3705)CCA>CAA	p.P1235Q		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1235										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGAGGTTGCTGGGATGGACTC	0.512000													37	82					1.58521e-26	2.09845e-26	1	0
FTSJD1	55783	broad.mit.edu	37	16	71318551	71318551	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr16:71318551T>C	uc010cga.2	-	3	1679	c.1273A>G	c.(1273-1275)ATT>GTT	p.I425V	FTSJD1_uc002ezy.3_Missense_Mutation_p.I425V|FTSJD1_uc002ezz.3_Missense_Mutation_p.I425V	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	425						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						CTACAACCAATACTAGATTTT	0.289000													6	23					0	0	0	0
ZNRF1	84937	broad.mit.edu	37	16	75033821	75033821	+	Silent	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr16:75033821G>A	uc002fdk.2	+	1	907	c.252G>A	c.(250-252)AGG>AGA	p.R84R	ZNRF1_uc010vmz.1_Silent_p.R84R|ZNRF1_uc002fdl.1_Silent_p.R84R|ZNRF1_uc010cgr.1_Silent_p.R84R	NM_032268	NP_115644	Q8ND25	ZNRF1_HUMAN	zinc and ring finger protein 1	84						cell junction|endosome|lysosome|synaptic vesicle membrane	ligase activity|protein binding|zinc ion binding				0						ACTCCGAGAGGGCGCCCGGCG	0.706000													4	8					0	0	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77328833	77328833	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr16:77328833C>T	uc002ffc.3	-	19	3412	c.2993G>A	c.(2992-2994)GGA>GAA	p.G998E	ADAMTS18_uc010chc.1_Missense_Mutation_p.G586E	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	998	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						AGACCAGGGTCCAAGGCTCCA	0.537000													16	41					0	0	0	0
PRPF8	10594	broad.mit.edu	37	17	1576445	1576445	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:1576445T>C	uc002fte.2	-	24	3818	c.3704A>G	c.(3703-3705)GAG>GGG	p.E1235G		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1235						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		CTGCATTGACTCATCGTCCAC	0.547000													53	30					0	0	0	0
SERPINF2	5345	broad.mit.edu	37	17	1650637	1650637	+	Silent	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:1650637C>A	uc002ftk.1	+	7	623	c.546C>A	c.(544-546)TCC>TCA	p.S182S	SERPINF2_uc010vqr.1_Silent_p.S118S	NM_000934	NP_000925	P08697	A2AP_HUMAN	alpha-2-antiplasmin isoform a precursor	182					acute-phase response|fibrinolysis|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)	Streptokinase(DB00086)	TGGAACAATCCGAACAGCTAT	0.567000													8	31					7.48243e-07	8.05608e-07	1	0
FLII	2314	broad.mit.edu	37	17	18151089	18151089	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:18151089C>A	uc002gsr.1	-	20	2420	c.2369G>T	c.(2368-2370)CGC>CTC	p.R790L	FLII_uc002gsq.1_Missense_Mutation_p.R661L|FLII_uc010cpy.1_Missense_Mutation_p.R779L|FLII_uc010vxn.1_Missense_Mutation_p.R759L|FLII_uc010vxo.1_Missense_Mutation_p.R735L|FLII_uc002gss.1_Missense_Mutation_p.R789L	NM_002018	NP_002009	Q13045	FLII_HUMAN	flightless I homolog	790	Interaction with ACTL6A.|Gelsolin-like 3.				multicellular organismal development|muscle contraction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	actin binding			central_nervous_system(1)|skin(1)	2	all_neural(463;0.228)					CGGGGACTTGCGGCCGAGCCA	0.672000													32	15					4.0492e-12	4.79081e-12	1	0
RDM1	201299	broad.mit.edu	37	17	34251686	34251686	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:34251686C>T	uc002hkh.2	-	4	539	c.490G>A	c.(490-492)GAA>AAA	p.E164K	RDM1_uc010cty.2_Intron|RDM1_uc010ctz.2_Intron|RDM1_uc010cua.2_Missense_Mutation_p.E141K|RDM1_uc002hkg.3_Missense_Mutation_p.E141K|RDM1_uc010cub.2_Intron|RDM1_uc010cud.2_Missense_Mutation_p.E164K|RDM1_uc010cuf.2_Intron|RDM1_uc010cue.2_Intron|RDM1_uc010cug.2_Intron|RDM1_uc010cuc.2_Intron|RDM1_uc010wco.1_Intron|RDM1_uc010wcp.1_Missense_Mutation_p.E141K|RDM1_uc002hki.2_Missense_Mutation_p.E164K	NM_145654	NP_663629	Q8NG50	RDM1_HUMAN	RAD52 motif 1 isoform 1	164					DNA recombination|DNA repair	Cajal body|cytoplasm|nucleolus|PML body	DNA binding|nucleotide binding|RNA binding			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		AACACCACTTCTAAAGCACAG	0.488000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					24	84					0	0	0	0
Unknown	0	broad.mit.edu	37	17	39296495	39296495	+	RNA	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:39296495G>C	uc010cxk.1	-	1		c.209C>G								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		ACAGCAGCTAGGGCGGCAGCA	0.537000													21	73					0	0	0	0
BECN1	8678	broad.mit.edu	37	17	40967928	40967928	+	Silent	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:40967928G>A	uc002ibo.3	-	8	963	c.828C>T	c.(826-828)ATC>ATT	p.I276I	BECN1_uc010whb.1_Silent_p.I189I|BECN1_uc010whc.1_Silent_p.I200I|BECN1_uc002ibn.2_Silent_p.I276I	NM_003766	NP_003757	Q14457	BECN1_HUMAN	beclin 1	276					anti-apoptosis|cell cycle|cellular defense response|cytokinesis|response to virus	membrane	protein binding			ovary(1)	1		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0745)		CTCATTACCAGATGTGGAAGG	0.483000													69	71					0	0	0	0
RAD51C	5889	broad.mit.edu	37	17	56787303	56787303	+	Silent	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:56787303T>C	uc002iwu.2	+	5	831	c.789T>C	c.(787-789)AAT>AAC	p.N263N	RAD51C_uc010woa.1_Silent_p.N263N|RAD51C_uc010ddc.2_RNA|RAD51C_uc002iwv.2_RNA|RAD51C_uc002iww.2_RNA	NM_058216	NP_478123	O43502	RA51C_HUMAN	RAD51 homolog C isoform 1	263					blood coagulation|DNA repair	mitochondrion|nucleoplasm|perinuclear region of cytoplasm	ATP binding|DNA binding|DNA-dependent ATPase activity				0	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGTTATTAAATGGCCTAGCCC	0.373000								Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2				30	153					0	0	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60351457	60351457	+	Missense_Mutation	SNP	G	A	A	rs4968502	by1000genomes	TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:60351457G>A	uc002izq.2	-	2	132	c.20C>T	c.(19-21)GCG>GTG	p.A7V	TBC1D3P2_uc010woz.1_RNA					SubName: Full=Putative uncharacterized protein TBC1D3E;												0						CCAACTACCCGCGACCTCTAC	0.537000													78	68					0	0	0	0
ABCA9	10350	broad.mit.edu	37	17	66978735	66978735	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:66978735G>A	uc002jhu.2	-	37	4831	c.4688C>T	c.(4687-4689)CCT>CTT	p.P1563L	ABCA9_uc010dez.2_Missense_Mutation_p.P1525L	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1563					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					CTGTGATAAAGGTCGCACATC	0.448000													67	42					0	0	0	0
KIF19	124602	broad.mit.edu	37	17	72350935	72350935	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:72350935G>C	uc002jkm.3	+	19	2859	c.2721G>C	c.(2719-2721)AAG>AAC	p.K907N		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	907					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CCCACCCCAAGACACACCTCC	0.627000													4	1					0	0	0	0
PTPRM	5797	broad.mit.edu	37	18	7955293	7955293	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:7955293A>G	uc002knn.3	+	7	1516	c.1013A>G	c.(1012-1014)TAT>TGT	p.Y338C	PTPRM_uc010dkv.2_Missense_Mutation_p.Y338C|PTPRM_uc010wzl.1_Missense_Mutation_p.Y125C	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	338	Fibronectin type-III 1.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				TCCACGAGCTATAAAATTGGA	0.572000													20	55					0	0	0	0
MC2R	4158	broad.mit.edu	37	18	13885460	13885460	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:13885460C>T	uc002ksp.1	-	2	235	c.58G>A	c.(58-60)GAC>AAC	p.D20N		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	20	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	CGAGGACAGTCGGAATTATTT	0.418000													15	36					0	0	0	0
MAPRE2	10982	broad.mit.edu	37	18	32682063	32682063	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:32682063C>T	uc002kyg.2	+	4	730	c.550C>T	c.(550-552)CCT>TCT	p.P184S	MAPRE2_uc010xcb.1_Missense_Mutation_p.P141S|MAPRE2_uc010xcc.1_Missense_Mutation_p.P172S|MAPRE2_uc002kyf.2_Missense_Mutation_p.P184S|MAPRE2_uc002kyh.2_Missense_Mutation_p.P131S|MAPRE2_uc010xcd.1_Missense_Mutation_p.P141S	NM_014268	NP_055083	Q15555	MARE2_HUMAN	microtubule-associated protein, RP/EB family,	184					cell division|cell proliferation|mitosis|signal transduction	cytoplasm|microtubule	microtubule binding			ovary(1)	1						TCCTCCTGACCCTGGTGAACA	0.448000													12	55					0	0	0	0
TCEB3B	51224	broad.mit.edu	37	18	44559812	44559812	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:44559812G>T	uc002lcr.1	-	1	2177	c.1824C>A	c.(1822-1824)TAC>TAA	p.Y608*	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	608	Activation domain (By similarity).				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GAAGCCGCAGGTACTGCTCCC	0.512000													24	98					7.76418e-22	9.91238e-22	1	0
MBD1	4152	broad.mit.edu	37	18	47806253	47806253	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:47806253C>T	uc010dow.1	-	2	547	c.110G>A	c.(109-111)AGC>AAC	p.S37N	MBD1_uc002lef.2_5'Flank|MBD1_uc002leg.2_Missense_Mutation_p.S37N|MBD1_uc010xdi.1_Missense_Mutation_p.S63N|MBD1_uc002leh.3_Missense_Mutation_p.S37N|MBD1_uc002len.2_Missense_Mutation_p.S37N|MBD1_uc002lei.3_Missense_Mutation_p.S37N|MBD1_uc002lej.3_Missense_Mutation_p.S37N|MBD1_uc002lek.3_Missense_Mutation_p.S37N|MBD1_uc002lel.3_Missense_Mutation_p.S37N|MBD1_uc002lem.3_Missense_Mutation_p.S37N|MBD1_uc010xdj.1_Missense_Mutation_p.S37N|MBD1_uc010xdk.1_Missense_Mutation_p.S37N|MBD1_uc010dox.1_Missense_Mutation_p.S37N|MBD1_uc002leo.2_Missense_Mutation_p.S37N	NM_015846	NP_056671	Q9UIS9	MBD1_HUMAN	methyl-CpG binding domain protein 1 isoform 1	37	MBD.				negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|nuclear speck	methyl-CpG binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CACCCAGTACCTCTGGTAATA	0.542000													26	71					0	0	0	0
DCC	1630	broad.mit.edu	37	18	50432616	50432616	+	Silent	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:50432616G>T	uc002lfe.1	+	3	1202	c.615G>T	c.(613-615)GGG>GGT	p.G205G	DCC_uc010xdr.1_Silent_p.G53G	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	205	Extracellular (Potential).|Ig-like C2-type 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TCCAACCGGGGGACATTGGAA	0.502000													13	53					1.52009e-12	1.80511e-12	1	0
DCC	1630	broad.mit.edu	37	18	50832003	50832003	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:50832003C>A	uc002lfe.1	+	13	2554	c.1967C>A	c.(1966-1968)ACC>AAC	p.T656N	DCC_uc010xdr.1_Missense_Mutation_p.T504N|DCC_uc010dpf.1_Missense_Mutation_p.T311N	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	656	Extracellular (Potential).|Fibronectin type-III 3.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GGATTTATTACCGGCTATAAA	0.413000													18	55					1.28384e-07	1.4057e-07	1	0
DCC	1630	broad.mit.edu	37	18	50848513	50848513	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:50848513A>T	uc002lfe.1	+	14	2737	c.2150A>T	c.(2149-2151)GAG>GTG	p.E717V	DCC_uc010xdr.1_Missense_Mutation_p.E565V|DCC_uc010dpf.1_Missense_Mutation_p.E372V	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	717	Extracellular (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GAGACTCCAGAGAATGATCTA	0.418000													15	36					0	0	0	0
CDH19	28513	broad.mit.edu	37	18	64172293	64172293	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:64172293C>G	uc002lkc.1	-	12	2213	c.2075G>C	c.(2074-2076)AGT>ACT	p.S692T	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_3'UTR	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	692	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				GAATATGGCACTGTCGGGGCC	0.498000													19	61					0	0	0	0
DOK6	220164	broad.mit.edu	37	18	67231740	67231740	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:67231740G>T	uc002lkl.2	+	2	274	c.84G>T	c.(82-84)TGG>TGT	p.W28C		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	28	PH.						insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				GACGATGCTGGTTGGTTTTCA	0.338000													8	27					3.86212e-05	4.02408e-05	1	0
SALL3	27164	broad.mit.edu	37	18	76754599	76754599	+	Missense_Mutation	SNP	G	T	T	rs146129529		TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:76754599G>T	uc002lmt.2	+	2	2608	c.2608G>T	c.(2608-2610)GGG>TGG	p.G870W	SALL3_uc010dra.2_Missense_Mutation_p.G477W	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	870					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GAACGGGTCCGGGGAGAGTGA	0.667000													20	55					1.10923e-09	1.2705e-09	1	0
ATP9B	374868	broad.mit.edu	37	18	76829442	76829442	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:76829442G>T	uc002lmx.2	+	1	46	c.32G>T	c.(31-33)CGT>CTT	p.R11L	ATP9B_uc002lmv.1_RNA|ATP9B_uc002lmw.1_Missense_Mutation_p.R11L|ATP9B_uc002lmu.2_Missense_Mutation_p.R11L	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	11	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		TACCCGGTGCGTAGCGCAGCG	0.711000													4	9					0.00024832	0.000257075	1	0
GRIN3B	116444	broad.mit.edu	37	19	1005351	1005351	+	Silent	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:1005351C>A	uc002lqo.1	+	3	1851	c.1851C>A	c.(1849-1851)TCC>TCA	p.S617S		NM_138690	NP_619635	O60391	NMD3B_HUMAN	glutamate receptor, ionotropic,	617	Cytoplasmic (Potential).				ionotropic glutamate receptor signaling pathway|protein insertion into membrane|regulation of calcium ion transport	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|ionotropic glutamate receptor activity|neurotransmitter receptor activity				0		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000226)|all_lung(49;0.000353)|Breast(49;0.00066)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Glycine(DB00145)|L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	TCTCCTACTCCTCAGCCCTCA	0.657000													55	127					7.91745e-34	1.1023e-33	1	0
FEM1A	55527	broad.mit.edu	37	19	4792850	4792850	+	Silent	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:4792850G>A	uc002mbf.2	+	1	1123	c.984G>A	c.(982-984)CTG>CTA	p.L328L	uc002mbg.1_RNA	NM_018708	NP_061178	Q9BSK4	FEM1A_HUMAN	fem-1 homolog a	328	TPR 1.				regulation of ubiquitin-protein ligase activity	cytoplasm	binding|ubiquitin-protein ligase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		CCATGGAGCTGCGTCACCAGG	0.602000													22	64					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9066714	9066714	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:9066714G>T	uc002mkp.2	-	3	20936	c.20732C>A	c.(20731-20733)ACC>AAC	p.T6911N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6913	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGGCCTTGGTTTTTTCTGA	0.478000													50	209					5.99346e-17	7.38888e-17	1	0
ZNF560	147741	broad.mit.edu	37	19	9580305	9580305	+	Splice_Site	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:9580305C>T	uc002mlp.1	-	8	739	c.529_splice	c.e8+1	p.E177_splice	ZNF560_uc010dwr.1_Splice_Site_p.E71_splice	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CAAACACTCACCTTGGAGAAC	0.458000													11	42					0	0	0	0
ZNF136	7695	broad.mit.edu	37	19	12296670	12296670	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:12296670A>T	uc002mti.2	+	2	174	c.74A>T	c.(73-75)CAG>CTG	p.Q25L	ZNF136_uc010xmh.1_Intron	NM_003437	NP_003428	P52737	ZN136_HUMAN	zinc finger protein 136	25	KRAB.				negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|pancreas(1)	2						GATCCTTCCCAGAAGAATCTC	0.448000													29	50					0	0	0	0
NWD1	284434	broad.mit.edu	37	19	16860954	16860955	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:16860954_16860955CA>AG	uc002neu.3	+	6	1923_1924	c.1501_1502CA>AG	c.(1501-1503)CAG>AGG	p.Q501R	NWD1_uc002net.3_Missense_Mutation_p.Q366R|NWD1_uc002nev.3_Missense_Mutation_p.Q295R			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	501	NACHT.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						AAACCAAGGCCAGCAGATGATC	0.639000													34	89					0	0	0	0
UNC13A	23025	broad.mit.edu	37	19	17768873	17768873	+	Silent	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:17768873G>T	uc002nhd.2	-	10	1029	c.1029C>A	c.(1027-1029)CTC>CTA	p.L343L		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	255					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						GCACCTACCTGAGGGCTTGTG	0.602000													14	28					6.31663e-08	7.05976e-08	1	0
ZNF708	7562	broad.mit.edu	37	19	21477072	21477072	+	Silent	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:21477072A>G	uc002npq.1	-	4	894	c.696T>C	c.(694-696)GCT>GCC	p.A232A	ZNF708_uc002npr.1_Silent_p.A168A|ZNF708_uc010ecs.1_Silent_p.A168A	NM_021269	NP_067092	P17019	ZN708_HUMAN	zinc finger protein 708	232	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(4)|skin(2)	6						ACTGGTTAAAAGCTTTTCCAC	0.358000													10	17					0	0	0	0
Unknown	0	broad.mit.edu	37	19	23170160	23170160	+	RNA	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:23170160C>A	uc002nqy.1	-	1		c.10G>T			uc002nqz.1_5'UTR					Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).																		GGGCTCTTTTCCTTGCTCCAG	0.423000													15	25					8.10497e-08	8.99624e-08	1	0
Unknown	0	broad.mit.edu	37	19	23405764	23405764	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:23405764C>A	uc010xri.1	-	4	1401	c.1283G>T	c.(1282-1284)GGC>GTC	p.G428V						SubName: Full=cDNA FLJ56866, moderately similar to Zinc finger protein 43;																		AAAGGCTTTGCCACATTCTTC	0.388000													8	13					1.06961e-07	1.18317e-07	1	0
THAP8	199745	broad.mit.edu	37	19	36530944	36530944	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:36530944C>G	uc002oda.1	-	2	723	c.178G>C	c.(178-180)GAG>CAG	p.E60Q	uc002ocy.2_Intron|THAP8_uc010xtb.1_Missense_Mutation_p.E17Q|THAP8_uc010xtc.1_Intron	NM_152658	NP_689871	Q8NA92	THAP8_HUMAN	THAP domain containing 8	60	THAP-type.						DNA binding|metal ion binding				0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GTGAAGTGCTCGCTGCACAAG	0.652000													18	55					0	0	0	0
CYP2A7	1549	broad.mit.edu	37	19	41388039	41388039	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:41388039T>A	uc002opm.2	-	1	619	c.77A>T	c.(76-78)CAG>CTG	p.Q26L	CYP2A7_uc002opo.2_Intron|CYP2A7_uc002opn.2_Missense_Mutation_p.Q26L	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	26						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			GCTCTTCCTCTGCTGCCAGAC	0.572000													52	72					0	0	0	0
AXL	558	broad.mit.edu	37	19	41754431	41754431	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:41754431G>A	uc010ehj.2	+	13	1740	c.1550G>A	c.(1549-1551)GGC>GAC	p.G517D	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehk.2_Missense_Mutation_p.G508D	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	517	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						AACAGCCTGGGCATCAGTGAA	0.453000													51	131					0	0	0	0
GRIK5	2901	broad.mit.edu	37	19	42563568	42563568	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:42563568C>A	uc002osj.1	-	5	655	c.620G>T	c.(619-621)CGT>CTT	p.R207L	GRIK5_uc010eib.1_Missense_Mutation_p.R126L	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	207	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	CTTGTCATCACGGATCTCCTT	0.572000													33	130					2.66277e-13	3.1737e-13	1	0
PSG5	5673	broad.mit.edu	37	19	43680053	43680053	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:43680053C>G	uc002ovu.2	-	3	809	c.678G>C	c.(676-678)ATG>ATC	p.M226I	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Missense_Mutation_p.M226I|PSG5_uc002ovv.2_Missense_Mutation_p.M319I|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	226	Ig-like C2-type 1.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				GGTCACTGCGCATGCCACCAT	0.488000													55	162					0	0	0	0
ZNF225	7768	broad.mit.edu	37	19	44635982	44635982	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:44635982T>A	uc002oyj.1	+	5	1458	c.1215T>A	c.(1213-1215)TGT>TGA	p.C405*	ZNF225_uc010eje.1_Nonsense_Mutation_p.C322*|ZNF225_uc010ejf.1_Nonsense_Mutation_p.C405*	NM_013362	NP_037494	Q9UK10	ZN225_HUMAN	zinc finger protein 225	405	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				GTGAAGAATGTGGGAAGGGAT	0.428000													52	92					0	0	0	0
CGB2	114336	broad.mit.edu	37	19	49536447	49536447	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:49536447G>T	uc002plw.2	+	3	684	c.461G>T	c.(460-462)GGG>GTG	p.G154V	CGB_uc010yad.1_Intron|SNAR-G2_uc010yae.1_5'Flank|CGB2_uc010yaf.1_Missense_Mutation_p.G142V|CGB2_uc010yag.1_Missense_Mutation_p.G142V	NM_033378	NP_203696			chorionic gonadotropin, beta polypeptide 2												0		all_epithelial(76;9.62e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000371)|OV - Ovarian serous cystadenocarcinoma(262;0.000503)|GBM - Glioblastoma multiforme(486;0.00518)|Epithelial(262;0.0427)		CGACTCCCGGGGCCCTCAGAC	0.632000													37	100					1.35996e-42	1.98763e-42	1	0
C19orf73	55150	broad.mit.edu	37	19	49622086	49622086	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:49622086C>A	uc002pmq.3	-	1	312	c.194G>T	c.(193-195)CGG>CTG	p.R65L	PPFIA3_uc002pmr.2_5'Flank|PPFIA3_uc010yai.1_5'Flank	NM_018111	NP_060581	Q9NVV2	CS073_HUMAN	hypothetical protein LOC55150	65										large_intestine(1)	1						TAGCCTCGTCCGCCGGGGGAA	0.701000													32	62					5.6714e-07	6.12663e-07	1	0
ZNF419	79744	broad.mit.edu	37	19	58005445	58005445	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:58005445G>T	uc002qov.2	+	5	1760	c.1520G>T	c.(1519-1521)GGA>GTA	p.G507V	ZNF547_uc002qpm.3_Intron|ZNF419_uc010ety.1_Missense_Mutation_p.G508V|ZNF419_uc010etz.1_Missense_Mutation_p.G495V|ZNF419_uc010eua.1_Missense_Mutation_p.G494V|ZNF419_uc002qow.2_Missense_Mutation_p.G475V|ZNF419_uc010eub.1_Missense_Mutation_p.G462V|ZNF419_uc010euc.1_Missense_Mutation_p.G461V	NM_024691	NP_078967	Q96HQ0	ZN419_HUMAN	zinc finger protein 419 isoform 2	507					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0252)|Lung(386;0.171)		ATTCACACTGGAGAAATGCAG	0.428000													28	68					2.49534e-26	3.28978e-26	1	0
TPO	7173	broad.mit.edu	37	2	1480943	1480943	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:1480943G>A	uc002qww.2	+	8	996	c.905G>A	c.(904-906)GGC>GAC	p.G302D	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.G302D|TPO_uc002qwr.2_Missense_Mutation_p.G302D|TPO_uc002qwx.2_Missense_Mutation_p.G302D|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Missense_Mutation_p.G302D	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	302	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GGGGACCAAGGCGCGCTCTTT	0.716000													11	29					0	0	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746577	77746577	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:77746577G>A	uc002snr.2	-	3	833	c.418C>T	c.(418-420)CTC>TTC	p.L140F	LRRTM4_uc002snq.2_Missense_Mutation_p.L140F|LRRTM4_uc002sns.2_Missense_Mutation_p.L140F|LRRTM4_uc002snt.2_Missense_Mutation_p.L141F	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	140	LRR 4.|Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TTGTAGGAGAGGTCCAGATTG	0.393000													16	35					0	0	0	0
Unknown	0	broad.mit.edu	37	2	78639845	78639845	+	RNA	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:78639845T>C	uc002snv.3	-	3		c.1007A>G								Homo sapiens cytochrome c, somatic pseudogene 6, mRNA (cDNA clone IMAGE:4815768).																		TCTATTAAAGTATGGTACACA	0.328000													3	3					0	0	0	0
REG1P	5969	broad.mit.edu	37	2	79363178	79363178	+	RNA	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:79363178C>A	uc002soa.1	-	4		c.1136G>T			REG1P_uc002sob.1_RNA|REG1P_uc002soc.1_RNA					Homo sapiens mRNA for Reg-related sequence derived peptide-1, complete cds.												0						ACCAGGGACCCACTACTCCAC	0.532000													9	23					0.000978159	0.000993539	1	0
USP39	10713	broad.mit.edu	37	2	85868160	85868160	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:85868160A>G	uc002sqe.2	+	10	1382	c.1346A>G	c.(1345-1347)TAT>TGT	p.Y449C	USP39_uc002sqb.2_Missense_Mutation_p.Y180C|USP39_uc010ysu.1_Missense_Mutation_p.Y371C|USP39_uc010ysv.1_Missense_Mutation_p.Y346C|USP39_uc010fgn.1_Missense_Mutation_p.Y449C|USP39_uc002sqf.2_Missense_Mutation_p.Y449C|USP39_uc002sqg.2_Missense_Mutation_p.Y449C|USP39_uc010fgo.2_Missense_Mutation_p.Y449C	NM_006590	NP_006581	Q53GS9	SNUT2_HUMAN	ubiquitin specific protease 39	449					spliceosome assembly|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)	1						TTGCCTCCATATCTAATCTTT	0.358000													21	35					0	0	0	0
Unknown	0	broad.mit.edu	37	2	89399422	89399422	+	RNA	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:89399422G>T	uc010ytr.1	-	46		c.5023C>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GATGGTGAGAGTGAAATCTGT	0.478000													72	146					4.45923e-32	6.12906e-32	1	0
Unknown	0	broad.mit.edu	37	2	90198992	90198992	+	RNA	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:90198992T>C	uc010fhm.2	+	24		c.3123T>C								Parts of antibodies, mostly variable regions.																		GTCAGGGTATTAGCAGCTGGT	0.522000													48	32					0	0	0	0
NPAS2	4862	broad.mit.edu	37	2	101591346	101591346	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:101591346C>T	uc002tap.1	+	13	1508	c.1222C>T	c.(1222-1224)CCA>TCA	p.P408S	NPAS2_uc010yvt.1_Missense_Mutation_p.P473S|NPAS2_uc010fit.1_5'UTR	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	408					central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						CAGTCATTCGCCATCGGCGTC	0.547000													12	47					0	0	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125192073	125192073	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:125192073C>T	uc002tno.2	+	5	906	c.542C>T	c.(541-543)GCT>GTT	p.A181V	CNTNAP5_uc010flu.2_Missense_Mutation_p.A181V	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	181	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TCAGATGTTGCTGACTTTGAT	0.418000													22	75					0	0	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125281896	125281896	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:125281896T>A	uc002tno.2	+	9	1705	c.1341T>A	c.(1339-1341)GAT>GAA	p.D447E	CNTNAP5_uc010flu.2_Missense_Mutation_p.D448E	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	447	Laminin G-like 2.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		ACTTGAATGATGGCCTGTGGC	0.557000													29	52					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	141460021	141460021	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:141460021G>C	uc002tvj.1	-	38	7097	c.6125C>G	c.(6124-6126)CCG>CGG	p.P2042R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2042	Extracellular (Potential).|LDL-receptor class B 21.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GATGCCATTCGGCCATGCTAT	0.428000										TSP Lung(27;0.18)			21	62					0	0	0	0
ACVR1	90	broad.mit.edu	37	2	158595049	158595049	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:158595049T>A	uc002tzm.3	-	11	1637	c.1298A>T	c.(1297-1299)GAT>GTT	p.D433V	ACVR1_uc002tzn.3_Missense_Mutation_p.D433V|ACVR1_uc010fog.2_Missense_Mutation_p.D433V	NM_001111067	NP_001104537	Q04771	ACVR1_HUMAN	activin A receptor, type I precursor	433	Cytoplasmic (Potential).|Protein kinase.				BMP signaling pathway|G1/S transition of mitotic cell cycle|negative regulation of activin receptor signaling pathway|negative regulation of apoptosis|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	activin receptor complex	activin binding|ATP binding|follistatin binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta binding			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.104)	Adenosine triphosphate(DB00171)	GGGAACCACATCGTAGAACGG	0.463000													27	112					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179436458	179436459	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:179436458_179436459GG>AT	uc010zfg.1	-	275	66920_66921	c.66696_66697CC>AT	c.(66694-66699)ACCCTT>ACATTT	p.L22233F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.L15928F|TTN_uc010zfi.1_Missense_Mutation_p.L15861F|TTN_uc010zfj.1_Missense_Mutation_p.L15736F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23160							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATAACATTAAGGGTTTCAATAG	0.436000													41	64					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179463659	179463659	+	Silent	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:179463659G>C	uc010zfg.1	-	240	49298	c.49074C>G	c.(49072-49074)ACC>ACG	p.T16358T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.T10053T|TTN_uc010zfi.1_Silent_p.T9986T|TTN_uc010zfj.1_Silent_p.T9861T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17285							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTTGAAGTGGTGTCTTTCA	0.453000													12	39					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179472023	179472023	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:179472023A>G	uc010zfg.1	-	227	45826	c.45602T>C	c.(45601-45603)CTT>CCT	p.L15201P	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.L8896P|TTN_uc010zfi.1_Missense_Mutation_p.L8829P|TTN_uc010zfj.1_Missense_Mutation_p.L8704P	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16128							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTAAGTCAAGAACTGGACC	0.358000													9	30					0	0	0	0
DNAH7	56171	broad.mit.edu	37	2	196750877	196750877	+	Silent	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:196750877G>A	uc002utj.3	-	34	5627	c.5526C>T	c.(5524-5526)TAC>TAT	p.Y1842Y		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1842					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CAAGCAAAGAGTAAGTTTCTC	0.383000													18	94					0	0	0	0
SATB2	23314	broad.mit.edu	37	2	200193507	200193507	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:200193507G>A	uc002uuy.1	-	8	2117	c.1300C>T	c.(1300-1302)CAG>TAG	p.Q434*	SATB2_uc010fsq.1_Nonsense_Mutation_p.Q316*|SATB2_uc002uuz.1_Nonsense_Mutation_p.Q434*|SATB2_uc002uva.1_Nonsense_Mutation_p.Q434*	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	434	CUT 1.					cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTCTCATCCTGGTAGATGCGA	0.557000													83	98					0	0	0	0
TTLL4	9654	broad.mit.edu	37	2	219602784	219602784	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:219602784C>T	uc002viy.2	+	3	755	c.385C>T	c.(385-387)CAG>TAG	p.Q129*	TTLL4_uc010zkl.1_5'UTR|TTLL4_uc010fvx.2_Nonsense_Mutation_p.Q129*	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	129					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		AAAACCGTACCAGCAACTGGA	0.532000													44	46					0	0	0	0
SPHKAP	80309	broad.mit.edu	37	2	228996727	228996728	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:228996727_228996728CC>AG	uc002vpq.2	-	2	153_154	c.106_107GG>CT	c.(106-108)GGC>CTC	p.G36L	SPHKAP_uc002vpp.2_Missense_Mutation_p.G36L|SPHKAP_uc010zlx.1_Missense_Mutation_p.G36L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	36						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GTTCCCCGGGCCGCTTCCTGAG	0.460000													37	54					0	0	0	0
CHRNG	1146	broad.mit.edu	37	2	233407649	233407649	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:233407649C>T	uc002vsx.1	+	7	683	c.662C>T	c.(661-663)GCG>GTG	p.A221V	CHRNG_uc010fye.1_Missense_Mutation_p.A169V	NM_005199	NP_005190	P07510	ACHG_HUMAN	cholinergic receptor, nicotinic, gamma	221	Extracellular (Potential).				muscle contraction	cell junction|postsynaptic membrane	acetylcholine receptor activity				0		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;6.39e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00079)|LUSC - Lung squamous cell carcinoma(224;0.00757)|Lung(119;0.0086)		GACCCAGCGGCGCCAGCCCAG	0.632000													11	42					0	0	0	0
INPP5D	3635	broad.mit.edu	37	2	234072460	234072460	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:234072460G>A	uc010zmo.1	+	11	1501	c.1348G>A	c.(1348-1350)GGC>AGC	p.G450S	INPP5D_uc010zmp.1_Missense_Mutation_p.G449S	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	450					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TTACGTGATCGGCACCCAAGA	0.552000													78	70					0	0	0	0
COL6A3	1293	broad.mit.edu	37	2	238275606	238275606	+	Silent	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:238275606G>T	uc002vwl.2	-	11	5509	c.5224C>A	c.(5224-5226)CGG>AGG	p.R1742R	COL6A3_uc002vwo.2_Silent_p.R1536R|COL6A3_uc010znj.1_Silent_p.R1135R	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1742	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TGAGGGACCCGCTGGTCCAGG	0.592000													20	26					1.50039e-11	1.74326e-11	1	0
SSTR4	6754	broad.mit.edu	37	20	23017157	23017157	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr20:23017157A>C	uc002wsr.2	+	1	1101	c.1037A>C	c.(1036-1038)TAC>TCC	p.Y346S		NM_001052	NP_001043	P31391	SSR4_HUMAN	somatostatin receptor 4	346	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			ovary(1)	1	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CCCCTGGACTACTATGCCACT	0.642000													43	58					0	0	0	0
SLC12A5	57468	broad.mit.edu	37	20	44686242	44686242	+	Nonstop_Mutation	SNP	T	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr20:44686242T>A	uc010zxl.1	+	26	3494	c.3418T>A	c.(3418-3420)TGA>AGA	p.*1140R	SLC12A5_uc002xrb.2_Nonstop_Mutation_p.*1117R	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	1140					potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CATCTACTCCTGAGAACCAGG	0.433000													80	65					0	0	0	0
DIDO1	11083	broad.mit.edu	37	20	61512638	61512638	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr20:61512638T>C	uc002ydr.1	-	16	4934	c.4670A>G	c.(4669-4671)CAC>CGC	p.H1557R	DIDO1_uc002yds.1_Missense_Mutation_p.H1557R	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1557					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GGGGTCCCTGTGGTTTGACGC	0.692000													88	77					0	0	0	0
LOC96610	96610	broad.mit.edu	37	22	22429794	22429794	+	RNA	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr22:22429794C>T	uc011aim.1	+	3		c.370C>T								Parts of antibodies, mostly variable regions.												0						CTGACTCAGCCGCCCTCCCTC	0.547000													19	35					0	0	0	0
LOC96610	96610	broad.mit.edu	37	22	23047023	23047023	+	RNA	SNP	T	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr22:23047023T>A	uc011aim.1	+	144		c.8865T>A								Parts of antibodies, mostly variable regions.												0						TGTTGCCTCCTATGAGCTGAC	0.542000													23	54					0	0	0	0
ANKRD54	129138	broad.mit.edu	37	22	38228672	38228672	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr22:38228672C>T	uc003auc.2	-	7	858	c.800G>A	c.(799-801)CGC>CAC	p.R267H	ANKRD54_uc003aud.2_Missense_Mutation_p.R144H	NM_138797	NP_620152	Q6NXT1	ANR54_HUMAN	ankyrin repeat domain 54	267											0	Melanoma(58;0.045)					CATCTGCAGGCGGGTGCAGAG	0.617000													17	51					0	0	0	0
NAGA	4668	broad.mit.edu	37	22	42461771	42461771	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr22:42461771C>A	uc003bbx.2	-	7	867	c.730G>T	c.(730-732)GGC>TGC	p.G244C	NAGA_uc003bby.2_Missense_Mutation_p.G244C|NAGA_uc003bbw.3_Missense_Mutation_p.G244C	NM_000262	NP_000253	P17050	NAGAB_HUMAN	alpha-N-acetylgalactosaminidase precursor	244					glycoside catabolic process|glycosylceramide catabolic process|oligosaccharide metabolic process	lysosome	alpha-galactosidase activity|alpha-N-acetylgalactosaminidase activity|cation binding|protein homodimerization activity			central_nervous_system(1)	1						TGCCCAGGGCCGGCCACTGGC	0.602000													20	46					1.66031e-10	1.90846e-10	1	0
KLHDC7B	113730	broad.mit.edu	37	22	50987549	50987549	+	Silent	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr22:50987549A>G	uc003bmi.2	+	1	1088	c.954A>G	c.(952-954)CTA>CTG	p.L318L		NM_138433	NP_612442	Q96G42	KLD7B_HUMAN	kelch domain containing 7B	318	Kelch 1.									central_nervous_system(1)	1		all_cancers(38;1.53e-10)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		OV - Ovarian serous cystadenocarcinoma(4;7.49e-69)|all cancers(3;9.79e-66)|Epithelial(4;1.3e-63)|GBM - Glioblastoma multiforme(4;0.000399)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCCTGCCTCTACCTGCGCACC	0.721000													56	80					0	0	0	0
SETD5	55209	broad.mit.edu	37	3	9512328	9512328	+	Silent	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:9512328G>A	uc003brt.2	+	19	3345	c.2910G>A	c.(2908-2910)GTG>GTA	p.V970V	SETD5_uc003bru.2_Silent_p.V872V|SETD5_uc003brv.2_Silent_p.V859V|SETD5_uc010hck.2_Silent_p.V452V|SETD5_uc003brx.2_Silent_p.V639V	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	970										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		AGACCCTCGTGAGAAACTCAG	0.517000													50	96					0	0	0	0
STT3B	201595	broad.mit.edu	37	3	31658535	31658535	+	Missense_Mutation	SNP	T	A	A	rs35863057		TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:31658535T>A	uc011axe.1	+	7	1091	c.1091T>A	c.(1090-1092)GTG>GAG	p.V364E	STT3B_uc010hft.1_Missense_Mutation_p.V364E|STT3B_uc003cer.1_Missense_Mutation_p.V364E|STT3B_uc003cet.2_Missense_Mutation_p.V115E	NM_178862	NP_849193	Q8TCJ2	STT3B_HUMAN	source of immunodominant MHC-associated	364	Helical; (Potential).				protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding				0						GCAGGTGCTGTGTTCCTTAGT	0.383000													51	44					0	0	0	0
GLB1	2720	broad.mit.edu	37	3	33099621	33099621	+	Silent	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:33099621C>A	uc003cfi.1	-	6	810	c.693G>T	c.(691-693)GGG>GGT	p.G231G	GLB1_uc003cfh.1_Silent_p.G201G|GLB1_uc003cfj.1_Intron|GLB1_uc011axk.1_Silent_p.G279G	NM_000404	NP_000395	P16278	BGAL_HUMAN	galactosidase, beta 1 isoform a preproprotein	231					carbohydrate metabolic process	lysosome|perinuclear region of cytoplasm	beta-galactosidase activity|cation binding|protein binding			large_intestine(1)	1		Melanoma(143;0.104)				CCTGCAGGGCCCCACATTTCA	0.488000													19	16					1.36565e-18	1.7097e-18	1	0
DCLK3	85443	broad.mit.edu	37	3	36779293	36779293	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:36779293C>G	uc003cgi.2	-	2	1349	c.858G>C	c.(856-858)AAG>AAC	p.K286N		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	286						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TCCTGCGGAGCTTCTCAAAGC	0.572000													51	66					0	0	0	0
DOCK3	1795	broad.mit.edu	37	3	51394511	51394511	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:51394511G>T	uc011bds.1	+	44	4645	c.4622G>T	c.(4621-4623)AGC>ATC	p.S1541I		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1541	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		AACCTGCTAAGCATGTGCCTG	0.517000													27	97					1.08312e-15	1.32018e-15	1	0
NISCH	11188	broad.mit.edu	37	3	52504899	52504899	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:52504899C>G	uc011beg.1	+	5	457	c.385C>G	c.(385-387)CTG>GTG	p.L129V	NISCH_uc003ded.3_Missense_Mutation_p.L129V|NISCH_uc003dec.1_Missense_Mutation_p.L129V	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	129	Necessary for homooligomerization and targeting to endosomes.|Necessary for binding to phosphoinositide-3-P; not sufficient for targeting to endosomes.				apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		CACCGCGGCACTGGCTGAAGA	0.507000													59	87					0	0	0	0
KBTBD8	84541	broad.mit.edu	37	3	67058734	67058734	+	Silent	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:67058734G>T	uc003dmy.2	+	4	1784	c.1731G>T	c.(1729-1731)CGG>CGT	p.R577R	KBTBD8_uc011bfv.1_Silent_p.R135R	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	577	Kelch 5.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		CCCCAGATCGGCTCTGGGACC	0.448000													32	44					6.02846e-25	7.82004e-25	1	0
TMF1	7110	broad.mit.edu	37	3	69096945	69096945	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:69096945T>C	uc003dnn.2	-	2	1158	c.911A>G	c.(910-912)TAT>TGT	p.Y304C	TMF1_uc011bfx.1_Missense_Mutation_p.Y304C	NM_007114	NP_009045	P82094	TMF1_HUMAN	TATA element modulatory factor 1	304					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi membrane|nucleus	DNA binding|protein binding|transcription cofactor activity				0		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;4.48e-05)|Epithelial(33;0.000274)|LUSC - Lung squamous cell carcinoma(21;0.0123)|KIRC - Kidney renal clear cell carcinoma(39;0.211)|Kidney(39;0.247)		TAAACGATTATATTCAGGACA	0.398000													9	33					0	0	0	0
ARL13B	200894	broad.mit.edu	37	3	93714736	93714737	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:93714736_93714737GG>TT	uc003drc.2	+	2	364_365	c.78_79GG>TT	c.(76-81)ATGGTG>ATTTTG	p.26_27MV>IL	ARL13B_uc010hop.2_5'UTR|ARL13B_uc003drd.2_Intron|ARL13B_uc003dre.2_5'UTR|ARL13B_uc003drf.2_Missense_Mutation_p.26_27MV>IL|ARL13B_uc003drg.2_Intron	NM_182896	NP_878899	Q3SXY8	AR13B_HUMAN	ADP-ribosylation factor-like 2-like 1 isoform 1	26_27							GTP binding				0						CTCTTTTGATGGTGGGACTTGA	0.287000													8	21					0	0	0	0
CCDC54	84692	broad.mit.edu	37	3	107097154	107097154	+	Silent	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:107097154C>T	uc003dwi.1	+	1	967	c.720C>T	c.(718-720)TAC>TAT	p.Y240Y		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	240											0						CAAATATTTACATTTACCCAG	0.353000													29	91					0	0	0	0
DPPA4	55211	broad.mit.edu	37	3	109052773	109052773	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:109052773A>C	uc003dxq.3	-	2	177	c.122T>G	c.(121-123)TTG>TGG	p.L41W	DPPA4_uc011bho.1_Missense_Mutation_p.L41W|DPPA4_uc011bhp.1_Missense_Mutation_p.L41W	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	41						nucleus	protein binding			upper_aerodigestive_tract(1)	1						TGTTCCTGGCAAAGCAATTGA	0.453000													34	46					0	0	0	0
GOLGB1	2804	broad.mit.edu	37	3	121413564	121413564	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:121413564C>A	uc003eei.3	-	13	5917	c.5791G>T	c.(5791-5793)GCA>TCA	p.A1931S	GOLGB1_uc010hrc.2_Missense_Mutation_p.A1936S|GOLGB1_uc003eej.3_Missense_Mutation_p.A1897S|GOLGB1_uc011bjm.1_Missense_Mutation_p.A1817S|GOLGB1_uc010hrd.1_Missense_Mutation_p.A1895S	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	1931	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TTAAGTTCTGCTAATTGATTC	0.363000													62	98					1.33661e-31	1.82934e-31	1	0
PPP2R3A	5523	broad.mit.edu	37	3	135721837	135721837	+	Silent	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:135721837T>C	uc003eqv.1	+	2	2062	c.1497T>C	c.(1495-1497)GAT>GAC	p.D499D	PPP2R3A_uc011blz.1_Intron	NM_002718	NP_002709	Q06190	P2R3A_HUMAN	protein phosphatase 2, regulatory subunit B'',	499					protein dephosphorylation	protein phosphatase type 2A complex	calcium ion binding|protein binding|protein phosphatase type 2A regulator activity			ovary(3)|pancreas(1)|lung(1)|breast(1)|skin(1)	7						ACCAGAGAGATTTTACAAATT	0.338000													13	41					0	0	0	0
CP	1356	broad.mit.edu	37	3	148916310	148916310	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:148916310C>A	uc003ewy.3	-	9	1810	c.1557G>T	c.(1555-1557)TGG>TGT	p.W519C	CP_uc011bnr.1_RNA|CP_uc003ewx.3_Missense_Mutation_p.W300C|CP_uc003ewz.2_Missense_Mutation_p.W519C|CP_uc010hvf.1_Missense_Mutation_p.W245C	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	519	Plastocyanin-like 3.|F5/8 type A 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	TGGGGACAGTCCATTCATAGG	0.468000													13	40					6.31663e-08	7.05976e-08	1	0
AADACL2	344752	broad.mit.edu	37	3	151474781	151474781	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:151474781T>C	uc003ezc.2	+	5	725	c.605T>C	c.(604-606)GTG>GCG	p.V202A	AADACL2_uc010hvn.2_5'UTR	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	202						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			TATTTTCAGGTGCAGAATGAT	0.303000													24	34					0	0	0	0
MME	4311	broad.mit.edu	37	3	154832816	154832816	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:154832816C>A	uc010hvr.1	+	4	441	c.230C>A	c.(229-231)ACT>AAT	p.T77N	MME_uc003fab.1_Missense_Mutation_p.T77N|MME_uc003fac.1_Missense_Mutation_p.T77N|MME_uc003fad.1_Missense_Mutation_p.T77N|MME_uc003fae.1_Missense_Mutation_p.T77N	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	77	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	GATGCCACCACTGAGCCTTGT	0.428000													46	99					1.27862e-28	1.72081e-28	1	0
SLITRK3	22865	broad.mit.edu	37	3	164908119	164908119	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:164908119C>G	uc003fej.3	-	2	944	c.500G>C	c.(499-501)GGG>GCG	p.G167A	SLITRK3_uc003fek.2_Missense_Mutation_p.G167A	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	167	LRR 4.|Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CCGAAATGCCCCACTCTCAAT	0.378000										HNSCC(40;0.11)			20	54					0	0	0	0
SPATA16	83893	broad.mit.edu	37	3	172737301	172737301	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:172737301G>T	uc003fin.3	-	4	981	c.823C>A	c.(823-825)CTG>ATG	p.L275M		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	275					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			TACCTCTCCAGACATCTAAAC	0.348000													69	180					2.61895e-37	3.72652e-37	1	0
ATP13A4	84239	broad.mit.edu	37	3	193183873	193183873	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:193183873G>C	uc003ftd.2	-	11	1321	c.1213C>G	c.(1213-1215)CTT>GTT	p.L405V	ATP13A4_uc003fte.1_Missense_Mutation_p.L405V|ATP13A4_uc011bsr.1_Intron|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Missense_Mutation_p.L111V	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	405	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		GTTCCTACAAGGCACAGGAGG	0.453000													89	370					0	0	0	0
SPATA18	132671	broad.mit.edu	37	4	52944914	52944914	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:52944914T>A	uc003gzl.2	+	8	1312	c.1034T>A	c.(1033-1035)GTA>GAA	p.V345E	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.V313E|SPATA18_uc003gzk.1_Missense_Mutation_p.V345E	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	345					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			GCATTCCATGTAGCAAAAATG	0.393000													23	70					0	0	0	0
UGT2A3	79799	broad.mit.edu	37	4	69796895	69796895	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:69796895C>A	uc003hef.2	-	4	1093	c.1062G>T	c.(1060-1062)TGG>TGT	p.W354C	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	354	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TCTGGGGTATCCAATCATACA	0.373000													18	36					7.4402e-23	9.53645e-23	1	0
ALB	213	broad.mit.edu	37	4	74274382	74274382	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:74274382C>A	uc003hgs.3	+	4	415	c.342C>A	c.(340-342)TGC>TGA	p.C114*	ALB_uc003hgw.3_Intron|ALB_uc011cbe.1_Intron|ALB_uc003hgt.3_Nonsense_Mutation_p.C114*|ALB_uc010iii.2_Intron|ALB_uc003hgu.3_Intron|ALB_uc003hgv.3_Intron|ALB_uc011cbf.1_Nonsense_Mutation_p.C4*|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'Flank	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	114	Albumin 1.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	TGGCTGACTGCTGTGCAAAAC	0.438000													11	40					1.58986e-06	1.70607e-06	1	0
PPEF2	5470	broad.mit.edu	37	4	76813035	76813035	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:76813035A>G	uc003hix.2	-	3	509	c.152T>C	c.(151-153)ATA>ACA	p.I51T	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.I51T	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	51					detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			AGCATATTCTATAGACTGGAA	0.592000													35	63					0	0	0	0
PKD2	5311	broad.mit.edu	37	4	88968011	88968011	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:88968011G>T	uc003hre.2	+	6	1603	c.1537G>T	c.(1537-1539)GTG>TTG	p.V513L	PKD2_uc011cdf.1_Intron	NM_000297	NP_000288	Q13563	PKD2_HUMAN	polycystin 2	513	Helical; (Potential).					basal cortex|basal plasma membrane|endoplasmic reticulum|integral to membrane|lamellipodium|microtubule basal body	calcium ion binding|cytoskeletal protein binding|voltage-gated chloride channel activity|voltage-gated sodium channel activity			skin(1)	1		Hepatocellular(203;0.114)|Acute lymphoblastic leukemia(40;0.221)		OV - Ovarian serous cystadenocarcinoma(123;9.98e-10)|COAD - Colon adenocarcinoma(81;0.0237)		TCTGGATGTTGTGATCGTTGT	0.363000													39	51					2.56175e-15	3.11069e-15	1	0
MMRN1	22915	broad.mit.edu	37	4	90874518	90874518	+	Silent	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:90874518C>A	uc003hst.2	+	8	3707	c.3636C>A	c.(3634-3636)GCC>GCA	p.A1212A	MMRN1_uc010iku.2_Silent_p.A515A|MMRN1_uc011cds.1_Silent_p.A954A	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	1212	C1q.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		CAATTCCAGCCAAGTTTCCCC	0.368000													16	53					4.14922e-12	4.89123e-12	1	0
TACR3	6870	broad.mit.edu	37	4	104512796	104512796	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:104512796G>T	uc003hxe.1	-	4	1076	c.933C>A	c.(931-933)TGC>TGA	p.C311*		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	311	Helical; Name=6; (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		AGGGCAGCCAGCAGATAGCAA	0.343000													18	19					1.45105e-14	1.74234e-14	1	0
PDE5A	8654	broad.mit.edu	37	4	120422353	120422353	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:120422353A>G	uc003idh.2	-	20	2617	c.2462T>C	c.(2461-2463)ATA>ACA	p.I821T	uc003ide.3_Intron|PDE5A_uc003idf.2_Missense_Mutation_p.I779T|PDE5A_uc003idg.2_Missense_Mutation_p.I769T	NM_001083	NP_001074	O76074	PDE5A_HUMAN	phosphodiesterase 5A isoform 1	821	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|zinc ion binding				0					Dipyridamole(DB00975)|Pentoxifylline(DB00806)|Sildenafil(DB00203)|Tadalafil(DB00820)|Theophylline(DB00277)|Vardenafil(DB00862)	GATGGCATCTATGAACCCAAC	0.348000													11	51					0	0	0	0
KIAA1109	84162	broad.mit.edu	37	4	123192226	123192226	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:123192226G>T	uc003ieh.2	+	45	7592	c.7547G>T	c.(7546-7548)GGA>GTA	p.G2516V	KIAA1109_uc003iel.1_Missense_Mutation_p.G451V|KIAA1109_uc003iek.2_Missense_Mutation_p.G1135V	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	2516					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TTAATGTTGGGAACCTTTAGC	0.418000													20	31					1.64113e-05	1.72667e-05	1	0
RNF150	57484	broad.mit.edu	37	4	141888963	141888963	+	Silent	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:141888963C>A	uc003iio.1	-	2	1203	c.549G>T	c.(547-549)CTG>CTT	p.L183L	RNF150_uc010iok.1_Silent_p.L183L|RNF150_uc003iip.1_Silent_p.L183L	NM_020724	NP_065775	Q9ULK6	RN150_HUMAN	ring finger protein 150 precursor	183	Extracellular (Potential).|PA.					integral to membrane	zinc ion binding			ovary(1)	1	all_hematologic(180;0.162)					TGTTTCTTTCCAGCAGGCTTA	0.478000													64	120					1.1794e-34	1.65629e-34	1	0
HHIP	64399	broad.mit.edu	37	4	145580832	145580832	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:145580832G>T	uc003ijs.1	+	4	1328	c.673G>T	c.(673-675)GGG>TGG	p.G225W	HHIP_uc003ijr.1_Missense_Mutation_p.G225W	NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	225						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		GGTTGTGAGTGGGCTGCGGCA	0.463000													45	141					9.52127e-25	1.22525e-24	1	0
HHIP	64399	broad.mit.edu	37	4	145580834	145580834	+	Silent	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:145580834G>C	uc003ijs.1	+	4	1330	c.675G>C	c.(673-675)GGG>GGC	p.G225G	HHIP_uc003ijr.1_Silent_p.G225G	NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	225						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		TTGTGAGTGGGCTGCGGCAGC	0.463000													46	138					0	0	0	0
KIAA0922	23240	broad.mit.edu	37	4	154525454	154525454	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:154525454C>T	uc003inm.3	+	25	3339	c.3287C>T	c.(3286-3288)ACA>ATA	p.T1096I	KIAA0922_uc010ipp.2_Missense_Mutation_p.T1097I|KIAA0922_uc010ipq.2_Missense_Mutation_p.T865I	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	1096	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				TCAGAGAACACAGCCGAGTTC	0.423000													21	39					0	0	0	0
DCHS2	54798	broad.mit.edu	37	4	155176799	155176799	+	Silent	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:155176799A>G	uc003inw.2	-	21	5448	c.5448T>C	c.(5446-5448)AGT>AGC	p.S1816S		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1816	Cadherin 16.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CGTTCAAACCACTGTCCAAGT	0.413000													15	46					0	0	0	0
GUCY1B3	2983	broad.mit.edu	37	4	156726337	156726337	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:156726337C>T	uc003ipc.2	+	13	1959	c.1792C>T	c.(1792-1794)CCA>TCA	p.P598S	GUCY1B3_uc011cio.1_Missense_Mutation_p.P620S|GUCY1B3_uc011cip.1_Missense_Mutation_p.P578S|GUCY1B3_uc003ipd.2_Missense_Mutation_p.P526S|GUCY1B3_uc010iqf.2_Missense_Mutation_p.P565S|GUCY1B3_uc010iqg.2_Missense_Mutation_p.P569S|GUCY1B3_uc011ciq.1_Missense_Mutation_p.P526S	NM_000857	NP_000848	Q02153	GCYB1_HUMAN	guanylate cyclase 1, soluble, beta 3	598					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble|intracellular membrane-bounded organelle	GTP binding|guanylate cyclase activity|receptor activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.148)		CAAAAAAGAACCAATGCAAGT	0.388000													8	16					0	0	0	0
CTSO	1519	broad.mit.edu	37	4	156858588	156858588	+	Silent	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:156858588T>C	uc003ipg.2	-	5	649	c.600A>G	c.(598-600)CAA>CAG	p.Q200Q		NM_001334	NP_001325	P43234	CATO_HUMAN	cathepsin O preproprotein	200					proteolysis	lysosome	cysteine-type endopeptidase activity				0	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.05)|Kidney(143;0.0627)|COAD - Colon adenocarcinoma(41;0.148)		ACAGACCATTTTGTGCTTTAA	0.299000													16	22					0	0	0	0
ADAM29	11086	broad.mit.edu	37	4	175896994	175896994	+	Silent	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:175896994G>T	uc003iuc.2	+	5	988	c.318G>T	c.(316-318)GTG>GTT	p.V106V	ADAM29_uc003iud.2_Silent_p.V106V|ADAM29_uc010irr.2_Silent_p.V106V|ADAM29_uc011cki.1_Silent_p.V106V	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	106					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		ATGGTTATGTGGAAGGGGACC	0.453000													22	56					8.10497e-08	8.99624e-08	1	0
FAT1	2195	broad.mit.edu	37	4	187531167	187531167	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:187531167C>G	uc003izf.2	-	15	10044	c.9856G>C	c.(9856-9858)GCC>CCC	p.A3286P		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3286	Extracellular (Potential).|Cadherin 30.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ATAAATACGGCCCCTGAATAG	0.413000										HNSCC(5;0.00058)			7	12					0	0	0	0
KIAA0947	23379	broad.mit.edu	37	5	5461973	5461973	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:5461973C>A	uc003jdm.3	+	13	2748	c.2526C>A	c.(2524-2526)AAC>AAA	p.N842K		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	842										ovary(1)|central_nervous_system(1)	2						GAGAAAATAACAATCCTGTAG	0.408000													28	27					1.75199e-13	2.09589e-13	1	0
CTNND2	1501	broad.mit.edu	37	5	11098693	11098693	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:11098693G>T	uc003jfa.1	-	15	2776	c.2631C>A	c.(2629-2631)AGC>AGA	p.S877R	CTNND2_uc010itt.2_Missense_Mutation_p.S786R|CTNND2_uc011cmy.1_Missense_Mutation_p.S540R|CTNND2_uc011cmz.1_Missense_Mutation_p.S444R|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.S444R	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	877					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						ATACCTTCCAGCTCCCTGCAG	0.468000													30	50					7.11191e-15	8.57144e-15	1	0
FBXL7	23194	broad.mit.edu	37	5	15937219	15937219	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:15937219C>A	uc003jfn.1	+	4	1881	c.1400C>A	c.(1399-1401)TCC>TAC	p.S467Y		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	467					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						TGCGAGGTCTCCGTGGAGGCC	0.607000													25	18					3.83957e-06	4.10656e-06	1	0
RXFP3	51289	broad.mit.edu	37	5	33937334	33937334	+	Silent	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:33937334C>A	uc003jic.1	+	1	846	c.489C>A	c.(487-489)TCC>TCA	p.S163S		NM_016568	NP_057652	Q9NSD7	RL3R1_HUMAN	relaxin/insulin-like family peptide receptor 3	163	Helical; Name=3; (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1						TGGTGACGTCCATGAACATGT	0.582000													63	62					7.75977e-34	1.08502e-33	1	0
EGFLAM	133584	broad.mit.edu	37	5	38407018	38407018	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:38407018C>A	uc003jlc.1	+	8	1241	c.917C>A	c.(916-918)TCT>TAT	p.S306Y	EGFLAM_uc003jlb.1_Missense_Mutation_p.S306Y|EGFLAM_uc003jle.1_Missense_Mutation_p.S72Y|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	306						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					AAGACCATTTCTAGGCTCATC	0.483000													26	108					1.5548e-18	1.939e-18	1	0
ATP6AP1L	92270	broad.mit.edu	37	5	81614007	81614007	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:81614007A>T	uc003khv.2	+	10	1888	c.563A>T	c.(562-564)CAC>CTC	p.H188L	ATP6AP1L_uc003khw.2_Missense_Mutation_p.H188L	NM_001017971	NP_001017971	Q52LC2	VAS1L_HUMAN	ATPase, H+ transporting, lysosomal accessory	188					ATP hydrolysis coupled proton transport	integral to membrane|proton-transporting V-type ATPase, V1 domain	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0						TCTCCTGCCCACTTCTCGCAG	0.537000													61	33					0	0	0	0
GLRX	2745	broad.mit.edu	37	5	95158243	95158243	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:95158243G>T	uc003klo.3	-	1	335	c.124C>A	c.(124-126)CTT>ATT	p.L42I	GLRX_uc003kln.3_Missense_Mutation_p.L42I	NM_001118890	NP_001112362	P35754	GLRX1_HUMAN	glutaredoxin (thioltransferase)	42	Glutaredoxin.				cell redox homeostasis|electron transport chain|nucleobase, nucleoside and nucleotide interconversion|transport	cytosol	electron carrier activity|glutathione disulfide oxidoreductase activity|protein disulfide oxidoreductase activity|protein N-terminus binding				0		all_cancers(142;3.38e-06)|all_epithelial(76;5.66e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0164)|Colorectal(57;0.0846)|Breast(839;0.198)		all cancers(79;2.62e-16)	Glutathione(DB00143)	AATTCCAGAAGCCCTTGTTTG	0.483000													85	49					1.90436e-54	2.84772e-54	1	0
MEGF10	84466	broad.mit.edu	37	5	126732333	126732333	+	Silent	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:126732333G>T	uc003kuh.3	+	7	884	c.522G>T	c.(520-522)CGG>CGT	p.R174R	MEGF10_uc010jdc.1_Silent_p.R174R|MEGF10_uc010jdd.1_Silent_p.R174R|MEGF10_uc003kui.3_Silent_p.R174R	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	174	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.|EGF-like 2.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		CGGGCTTCCGGGGCTGGCGCT	0.642000													47	32					6.7651e-33	9.37823e-33	1	0
FBXL21	26223	broad.mit.edu	37	5	135276290	135276290	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:135276290A>T	uc010jec.1	+	4	623	c.602A>T	c.(601-603)AAT>ATT	p.N201I	FBXL21_uc003lbc.2_RNA	NM_012159	NP_036291	Q9UKT6	FXL21_HUMAN	F-box and leucine-rich repeat protein 21	201	LRR 2.				rhythmic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CTTGTGGCCAATAATAGTGAC	0.333000													8	31					0	0	0	0
CD74	972	broad.mit.edu	37	5	149792229	149792229	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:149792229C>G	uc003lsc.2	-	1	95	c.84G>C	c.(82-84)GAG>GAC	p.E28D	CD74_uc003lse.2_Missense_Mutation_p.E28D|CD74_uc003lsd.2_Missense_Mutation_p.E28D|CD74_uc003lsf.1_Missense_Mutation_p.E28D	NM_001025159	NP_001020330	P04233	HG2A_HUMAN	CD74 antigen isoform a	28	Cytoplasmic (Potential).				antigen processing and presentation of endogenous antigen|cell proliferation|immunoglobulin mediated immune response|intracellular protein transport|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of peptide secretion|positive regulation of B cell proliferation|positive regulation of chemokine (C-X-C motif) ligand 2 production|positive regulation of cytokine-mediated signaling pathway|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of macrophage cytokine production|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|prostaglandin biosynthetic process|protein complex assembly|regulation of macrophage activation	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|lysosome|receptor complex	beta-amyloid binding|cytokine receptor activity|identical protein binding|MHC class II protein binding			breast(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGGCAGTTGCTCATTGTTGG	0.622000			T	ROS1	NSCLC								158	96					0	0	0	0
ADAM19	8728	broad.mit.edu	37	5	156920125	156920125	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:156920125G>T	uc003lwz.2	-	16	1828	c.1764C>A	c.(1762-1764)AAC>AAA	p.N588K	ADAM19_uc003lww.1_Missense_Mutation_p.N321K|ADAM19_uc003lwy.2_Missense_Mutation_p.N187K|ADAM19_uc011ddr.1_Missense_Mutation_p.N519K	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	588	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGGGCACCGCGTTGGACTCCA	0.597000													73	63					1.42536e-29	1.92632e-29	1	0
CLINT1	9685	broad.mit.edu	37	5	157218892	157218892	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:157218892G>A	uc003lxj.1	-	10	1389	c.1199C>T	c.(1198-1200)GCG>GTG	p.A400V	CLINT1_uc003lxg.1_5'Flank|CLINT1_uc003lxh.1_5'UTR|CLINT1_uc003lxi.1_Missense_Mutation_p.A382V|CLINT1_uc011ddv.1_Missense_Mutation_p.A400V	NM_014666	NP_055481	Q14677	EPN4_HUMAN	epsin 4	400					endocytosis|post-Golgi vesicle-mediated transport	clathrin-coated vesicle|cytosol|Golgi apparatus|membrane|perinuclear region of cytoplasm	clathrin binding|lipid binding			ovary(2)|pancreas(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AAGTTCTACCGCTGGCTGTGA	0.547000													23	15					0	0	0	0
NSD1	64324	broad.mit.edu	37	5	176638857	176638857	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:176638857C>T	uc003mfr.3	+	5	3595	c.3457C>T	c.(3457-3459)CAA>TAA	p.Q1153*	NSD1_uc003mft.3_Nonsense_Mutation_p.Q884*|NSD1_uc003mfs.1_Nonsense_Mutation_p.Q1050*|NSD1_uc011dfx.1_Nonsense_Mutation_p.Q801*	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1153					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TGGTGTAAATCAAGTGGTGCC	0.418000			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			28	15					0	0	0	0
HIST1H3A	8350	broad.mit.edu	37	6	26020994	26020994	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr6:26020994C>A	uc003nfp.1	+	1	277	c.277C>A	c.(277-279)CTG>ATG	p.L93M	HIST1H1A_uc003nfo.2_5'Flank|HIST1H4A_uc003nfq.2_5'Flank	NM_003529	NP_003520	P68431	H31_HUMAN	histone cluster 1, H3a	93					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)|pancreas(1)	2						TGTGATGGCTCTGCAGGAGGC	0.552000													24	14					2.08973e-25	2.73272e-25	1	0
ZNF192	7745	broad.mit.edu	37	6	28121695	28121695	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr6:28121695A>G	uc003nkn.1	+	6	1821	c.1637A>G	c.(1636-1638)TAC>TGC	p.Y546C	ZNF192_uc010jqx.1_Missense_Mutation_p.Y546C|ZNF192_uc010jqy.1_Missense_Mutation_p.Y359C|ZNF192_uc011dkz.1_Missense_Mutation_p.Y359C	NM_006298	NP_006289	Q15776	ZN192_HUMAN	zinc finger protein 192	546	C2H2-type 9.				viral reproduction	cytoplasm|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GAGAAGCCCTACCAATGTAAT	0.423000													43	25					0	0	0	0
COL11A2	1302	broad.mit.edu	37	6	33136530	33136530	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr6:33136530C>G	uc003ocx.1	-	53	4087	c.3859G>C	c.(3859-3861)GAT>CAT	p.D1287H	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.D1201H|COL11A2_uc003ocz.1_Missense_Mutation_p.D1180H	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1287	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						TTAGCACCATCCTGGCCCTGC	0.617000													8	6					0	0	0	0
OPN5	221391	broad.mit.edu	37	6	47749839	47749839	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr6:47749839C>A	uc003ozc.2	+	1	42	c.37C>A	c.(37-39)CGC>AGC	p.R13S		NM_181744	NP_859528	Q6U736	OPN5_HUMAN	opsin 5 isoform 1	13	Extracellular (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1						TCAGGACGAGCGCCTGCCCCA	0.478000													47	31					4.46115e-38	6.37589e-38	1	0
RIMS1	22999	broad.mit.edu	37	6	72970465	72970465	+	Silent	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr6:72970465T>C	uc003pga.2	+	19	3188	c.3111T>C	c.(3109-3111)ACT>ACC	p.T1037T	RIMS1_uc011dyb.1_Intron|RIMS1_uc003pgc.2_Silent_p.T663T|RIMS1_uc010kaq.2_Silent_p.T510T|RIMS1_uc011dyc.1_Silent_p.T511T|RIMS1_uc010kar.2_Silent_p.T430T|RIMS1_uc011dyd.1_Silent_p.T496T|RIMS1_uc003pgf.2_Silent_p.T253T|RIMS1_uc003pgg.2_Silent_p.T254T|RIMS1_uc003pgi.2_Intron|RIMS1_uc003pgh.2_Silent_p.T253T|RIMS1_uc003pgd.2_Silent_p.T254T|RIMS1_uc003pge.2_Silent_p.T254T|RIMS1_uc011dye.1_Silent_p.T16T|RIMS1_uc011dyf.1_Silent_p.T16T|RIMS1_uc003pgb.3_Silent_p.T663T|RIMS1_uc010kas.1_Silent_p.T496T	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1037					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				GCCTACATACTACCAGGTAAA	0.433000													13	20					0	0	0	0
MANEA	79694	broad.mit.edu	37	6	96054237	96054237	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr6:96054237G>C	uc003poo.1	+	5	1485	c.1345G>C	c.(1345-1347)GAA>CAA	p.E449Q		NM_024641	NP_078917	Q5SRI9	MANEA_HUMAN	mannosidase, endo-alpha	449	Catalytic (Probable).|Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	glycoprotein endo-alpha-1,2-mannosidase activity			ovary(2)|breast(1)	3		all_cancers(76;1.01e-06)|Acute lymphoblastic leukemia(125;3.58e-09)|all_hematologic(75;1.22e-06)|all_epithelial(107;0.00433)|Colorectal(196;0.0341)		BRCA - Breast invasive adenocarcinoma(108;0.148)		ATACAGTAAGGAAAGAGCAAC	0.353000													42	12					0	0	0	0
RSPO3	84870	broad.mit.edu	37	6	127471623	127471623	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr6:127471623T>A	uc003qar.2	+	3	632	c.342T>A	c.(340-342)TGT>TGA	p.C114*	RSPO3_uc003qas.1_Nonsense_Mutation_p.C114*	NM_032784	NP_116173	Q9BXY4	RSPO3_HUMAN	R-spondin 3 precursor	114	FU 2.					extracellular region	heparin binding				0				GBM - Glioblastoma multiforme(226;0.0555)		GCACAAAATGTAAAAGTGGAT	0.373000													45	25					0	0	0	0
ESR1	2099	broad.mit.edu	37	6	152129441	152129441	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr6:152129441C>A	uc003qom.3	+	3	764	c.394C>A	c.(394-396)CTG>ATG	p.L132M	ESR1_uc010kin.2_Missense_Mutation_p.L132M|ESR1_uc010kio.2_Missense_Mutation_p.L132M|ESR1_uc010kip.2_Missense_Mutation_p.L132M|ESR1_uc003qon.3_Missense_Mutation_p.L132M|ESR1_uc003qoo.3_Missense_Mutation_p.L132M|ESR1_uc010kiq.2_Translation_Start_Site|ESR1_uc010kir.2_Missense_Mutation_p.L132M	NM_001122742	NP_001116214	P03372	ESR1_HUMAN	estrogen receptor alpha isoform 4	132	Modulating; mediates interaction with MACROD1.				positive regulation of retinoic acid receptor signaling pathway|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to estradiol stimulus	chromatin remodeling complex|cytoplasm|nucleoplasm	beta-catenin binding|enzyme binding|estrogen receptor activity|estrogen response element binding|nitric-oxide synthase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			central_nervous_system(2)|ovary(1)|lung(1)|breast(1)	5		Ovarian(120;0.0448)	BRCA - Breast invasive adenocarcinoma(37;0.0841)	OV - Ovarian serous cystadenocarcinoma(155;4.55e-10)	Chlorotrianisene(DB00269)|Clomifene(DB00882)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Desogestrel(DB00304)|Dienestrol(DB00890)|Diethylstilbestrol(DB00255)|Dromostanolone(DB00858)|Drospirenone(DB01395)|Estradiol(DB00783)|Estramustine(DB01196)|Estriol(DB04573)|Estrone(DB00655)|Ethinyl Estradiol(DB00977)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Fluoxymesterone(DB01185)|Fulvestrant(DB00947)|Letrozole(DB01006)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Melatonin(DB01065)|Mestranol(DB01357)|Naloxone(DB01183)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)|Quinestrol(DB04575)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Toremifene(DB00539)	GCCCTACTACCTGGAGAACGA	0.552000													5	9					3.09899e-07	3.38166e-07	1	0
SYNE1	23345	broad.mit.edu	37	6	152539539	152539539	+	Splice_Site	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr6:152539539C>A	uc010kiw.2	-	121	22647	c.22045_splice	c.e121-1	p.A7349_splice	SYNE1_uc010kiv.2_Splice_Site_p.A1873_splice|SYNE1_uc003qos.3_Splice_Site_p.A1873_splice|SYNE1_uc003qot.3_Splice_Site_p.A7278_splice|SYNE1_uc003qou.3_Splice_Site_p.A7349_splice|SYNE1_uc003qor.3_Splice_Site_p.A249_splice	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1						cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GAACTCCAGCCTTTTTTTCCA	0.343000										HNSCC(10;0.0054)			67	49					2.02627e-32	2.79695e-32	1	0
CREB5	9586	broad.mit.edu	37	7	28547350	28547350	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:28547350A>T	uc003szq.2	+	4	676	c.286A>T	c.(286-288)AAG>TAG	p.K96*	CREB5_uc003szo.2_Nonsense_Mutation_p.K63*|CREB5_uc003szr.2_Nonsense_Mutation_p.K89*	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	96					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						GGAGAGCAGCAAGCGGGTAGG	0.562000													54	141					0	0	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31123764	31123764	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:31123764G>T	uc003tca.1	+	7	560	c.337G>T	c.(337-339)GTG>TTG	p.V113L	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.V92L|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.V113L|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.V113L|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.V113L|ADCYAP1R1_uc003tcf.1_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	113	Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						AGACATGGGAGTGGTGAGCCG	0.478000													24	117					1.66031e-10	1.90846e-10	1	0
CCDC129	223075	broad.mit.edu	37	7	31682745	31682745	+	Silent	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:31682745C>A	uc003tcj.1	+	11	2754	c.1761C>A	c.(1759-1761)GGC>GGA	p.G587G	CCDC129_uc011kad.1_Silent_p.G597G|CCDC129_uc003tci.1_Silent_p.G438G|CCDC129_uc011kae.1_Silent_p.G613G|CCDC129_uc003tck.1_Silent_p.G495G	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	587											0						AGGGAGCTGGCAAAGTGCAAA	0.498000													57	204					2.2129e-31	3.01589e-31	1	0
ZNF479	90827	broad.mit.edu	37	7	57194381	57194381	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:57194381C>A	uc010kzo.2	-	3	355	c.84G>T	c.(82-84)GAG>GAT	p.E28D		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	28	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			ATTGCCATTCCTCCAGAGAGA	0.438000													30	43					1.99505e-19	2.52707e-19	1	0
SEMA3D	223117	broad.mit.edu	37	7	84649548	84649548	+	Splice_Site	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:84649548C>A	uc003uic.2	-	12	1543	c.1503_splice	c.e12+1	p.K501_splice	SEMA3D_uc010led.2_Splice_Site_p.K501_splice|SEMA3D_uc003uib.2_Splice_Site_p.K140_splice	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor						cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						CTGAGTCTTACCTTGAATATC	0.413000													23	43					3.65163e-15	4.41751e-15	1	0
AKAP9	10142	broad.mit.edu	37	7	91630492	91630492	+	Silent	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:91630492C>A	uc003ulg.2	+	8	1486	c.1261C>A	c.(1261-1263)CGA>AGA	p.R421R	AKAP9_uc003ule.2_Silent_p.R433R|AKAP9_uc003ulf.2_Silent_p.R421R|AKAP9_uc003uli.2_Silent_p.R46R	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	433	Glu-rich.|Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TATAGTACAACGAATGGAACA	0.348000			T	BRAF	papillary thyroid								35	123					1.60099e-16	1.95878e-16	1	0
TECPR1	25851	broad.mit.edu	37	7	97874006	97874006	+	Splice_Site	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:97874006C>G	uc003upg.2	-	5	614	c.409_splice	c.e5-1	p.G137_splice	TECPR1_uc003uph.1_Splice_Site_p.G58_splice	NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1							integral to membrane	protein binding			pancreas(1)	1						ACGTCCACCCCTGAAACACCA	0.587000													61	105					0	0	0	0
MCM7	4176	broad.mit.edu	37	7	99697268	99697268	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:99697268C>G	uc003usw.1	-	3	730	c.220G>C	c.(220-222)GCG>CCG	p.A74P	MCM7_uc003usv.1_5'UTR|MCM7_uc003usx.1_5'UTR|AP4M1_uc011kjg.1_5'Flank|AP4M1_uc010lgl.1_5'Flank|AP4M1_uc003utb.3_5'Flank|AP4M1_uc003utc.3_5'Flank|AP4M1_uc010lgm.2_5'Flank|AP4M1_uc003utd.2_5'Flank|AP4M1_uc011kjh.1_5'Flank|AP4M1_uc003ute.3_5'Flank|AP4M1_uc003utf.3_5'Flank	NM_005916	NP_005907	P33993	MCM7_HUMAN	minichromosome maintenance complex component 7	74					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of phosphorylation|response to DNA damage stimulus|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|protein binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)				Atorvastatin(DB01076)	AAGAGCTTCGCGTAGCGCCTG	0.547000													31	109					0	0	0	0
STAG3	10734	broad.mit.edu	37	7	99802959	99802959	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:99802959G>A	uc003utx.1	+	29	3345	c.3190G>A	c.(3190-3192)GAG>AAG	p.E1064K	STAG3_uc011kjk.1_Missense_Mutation_p.E1006K|GATS_uc003uty.3_Intron|GATS_uc003utz.3_Intron|GATS_uc003uua.3_Intron|GATS_uc010lgt.2_Intron|STAG3_uc003uub.1_Missense_Mutation_p.E288K	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	1064					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GAACACAGCAGAGACCAGCCC	0.632000													39	47					0	0	0	0
KCND2	3751	broad.mit.edu	37	7	119915462	119915462	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:119915462G>A	uc003vjj.1	+	1	1741	c.776G>A	c.(775-777)CGT>CAT	p.R259H		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	259	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					CGTTTTGTGCGTAGTGTCATG	0.532000													10	32					0	0	0	0
PLXNA4	91584	broad.mit.edu	37	7	131848901	131848901	+	Silent	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:131848901C>A	uc003vra.3	-	24	4729	c.4500G>T	c.(4498-4500)CTG>CTT	p.L1500L		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1500	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GTGGGCTCACCAGGGTTTTGT	0.602000													9	41					0.000442599	0.000452404	1	0
ZC3HAV1	56829	broad.mit.edu	37	7	138764847	138764848	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:138764847_138764848GC>AA	uc003vun.2	-	4	1227_1228	c.839_840GC>TT	c.(838-840)AGC>ATT	p.S280I	ZC3HAV1_uc003vuo.2_5'Flank|ZC3HAV1_uc003vup.2_Missense_Mutation_p.S280I	NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	280					response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						AAGCCCTGTGGCTGATCTGATC	0.584000													29	150					0	0	0	0
PRSS1	5644	broad.mit.edu	37	7	142459789	142459789	+	Missense_Mutation	SNP	G	T	T	rs77914057		TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:142459789G>T	uc003wak.2	+	3	382	c.365G>T	c.(364-366)CGC>CTC	p.R122L	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Missense_Mutation_p.R62L	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	122	Peptidase S1.		R -> H (in PCTT; suppresses an autocleavage site which is probably part of a fail-safe mechanism by which trypsin, which is activated within the pancreas, may be inactivated; loss of this cleavage site would permit autodigestion resulting in pancreatitis).|R -> C (in PCTT; suppresses an autocleavage site).		digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			ATCAACGCCCGCGTGTCCACC	0.577000									Hereditary_Pancreatitis				43	132					1.15505e-17	1.42943e-17	1	0
OR2A12	346525	broad.mit.edu	37	7	143792215	143792215	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:143792215G>C	uc011kty.1	+	1	15	c.15G>C	c.(13-15)CAG>CAC	p.Q5H		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	5	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					AAAGCAATCAGACCTGGATCA	0.398000													18	37					0	0	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147815227	147815227	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:147815227G>T	uc003weu.1	+	16	2917	c.2401G>T	c.(2401-2403)GCC>TCC	p.A801S		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	801	Laminin G-like 3.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TTGGAATGCCGCCTCTTTCCC	0.443000										HNSCC(39;0.1)			58	87					8.73484e-25	1.12854e-24	1	0
REPIN1	29803	broad.mit.edu	37	7	150069096	150069096	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:150069096C>T	uc010lpq.1	+	4	1255	c.766C>T	c.(766-768)CGC>TGC	p.R256C	REPIN1_uc003whd.2_Missense_Mutation_p.R245C|REPIN1_uc010lpr.1_Missense_Mutation_p.R313C|REPIN1_uc003whc.2_Missense_Mutation_p.R256C|REPIN1_uc003whe.2_Missense_Mutation_p.R256C	NM_013400	NP_037532	Q9BWE0	REPI1_HUMAN	replication initiator 1 isoform 1	256	C2H2-type 6.				DNA replication	nuclear origin of replication recognition complex	DNA binding|zinc ion binding			pancreas(1)	1	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.011)			CGCTCACCGCCGCGTGCACAC	0.597000													20	65					0	0	0	0
RP1L1	94137	broad.mit.edu	37	8	10467869	10467869	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:10467869G>A	uc003wtc.2	-	4	3968	c.3739C>T	c.(3739-3741)CCA>TCA	p.P1247S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1247					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		AGATCCCCTGGGCTCTCATAA	0.552000													14	35					0	0	0	0
HR	55806	broad.mit.edu	37	8	21986565	21986565	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:21986565G>A	uc003xas.2	-	2	784	c.119C>T	c.(118-120)CCG>CTG	p.P40L	HR_uc003xat.2_Missense_Mutation_p.P40L|HR_uc010lts.2_Missense_Mutation_p.P40L	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	40							DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		CAGGCACAGCGGCCCATGGTG	0.672000													15	62					0	0	0	0
ADAM28	10863	broad.mit.edu	37	8	24167434	24167434	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:24167434A>T	uc003xdy.2	+	3	261	c.178A>T	c.(178-180)AAA>TAA	p.K60*	ADAM28_uc003xdx.2_Nonsense_Mutation_p.K60*|ADAM28_uc011kzz.1_5'UTR|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	60					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		ATTAAAGTATAAAATGACAAT	0.274000													7	32					0	0	0	0
DPYSL2	1808	broad.mit.edu	37	8	26509930	26509930	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:26509930A>T	uc003xfb.1	+	12	1789	c.1439A>T	c.(1438-1440)AAG>ATG	p.K480M	DPYSL2_uc003xfa.2_Missense_Mutation_p.K585M|DPYSL2_uc010luk.1_RNA|DPYSL2_uc011lah.1_Missense_Mutation_p.K444M	NM_001386	NP_001377	Q16555	DPYL2_HUMAN	dihydropyrimidinase-like 2	480					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	dihydropyrimidinase activity|protein binding			large_intestine(1)	1		all_cancers(63;0.121)|Ovarian(32;2.68e-05)|all_epithelial(46;0.116)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;3.33e-10)|Colorectal(74;0.183)		TTTGTTTACAAGCGTATCAAG	0.433000													18	50					0	0	0	0
KCNU1	157855	broad.mit.edu	37	8	36793341	36793341	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:36793341C>T	uc010lvw.2	+	27	3440	c.3353C>T	c.(3352-3354)TCT>TTT	p.S1118F		NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	1118	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		ATTATATCATCTCAGATACCT	0.378000													16	47					0	0	0	0
ADAM18	8749	broad.mit.edu	37	8	39525676	39525676	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:39525676C>A	uc003xni.2	+	14	1486	c.1486C>A	c.(1486-1488)CAA>AAA	p.Q496K	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.Q472K	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	496	Cys-rich.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CGGACAATGTCAAACTACTGA	0.383000													26	113					6.38683e-12	7.47444e-12	1	0
RNF19A	25897	broad.mit.edu	37	8	101300161	101300161	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:101300161G>C	uc003yjj.1	-	3	559	c.242C>G	c.(241-243)TCA>TGA	p.S81*	RNF19A_uc003yjk.1_Nonsense_Mutation_p.S81*|RNF19A_uc003yjl.1_Nonsense_Mutation_p.S81*	NM_015435	NP_056250	Q9NV58	RN19A_HUMAN	ring finger protein 19	81					microtubule cytoskeleton organization|protein modification process	centrosome|integral to membrane	ligase activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(14;3.5e-05)|all_epithelial(15;8.91e-08)|Lung NSC(17;0.000615)|all_lung(17;0.00166)		Epithelial(11;3.06e-11)|all cancers(13;5.78e-09)|OV - Ovarian serous cystadenocarcinoma(57;2.24e-05)|STAD - Stomach adenocarcinoma(118;0.0525)			TAGCTCCCTTGATTTACGTTT	0.388000													175	103					0	0	0	0
ANGPT1	284	broad.mit.edu	37	8	108334194	108334194	+	Silent	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:108334194G>T	uc003ymn.2	-	4	1206	c.738C>A	c.(736-738)GTC>GTA	p.V246V	ANGPT1_uc011lhv.1_Silent_p.V46V|ANGPT1_uc003ymo.2_Silent_p.V246V|ANGPT1_uc003ymp.3_Silent_p.V46V	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	246	Potential.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			GCTTCTGAAGGACACTGTTGT	0.428000													75	102					6.11987e-43	8.98509e-43	1	0
CSMD3	114788	broad.mit.edu	37	8	113246666	113246666	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:113246666T>C	uc003ynu.2	-	68	10827	c.10668A>G	c.(10666-10668)ATA>ATG	p.I3556M	CSMD3_uc003yns.2_Missense_Mutation_p.I2758M|CSMD3_uc003ynt.2_Missense_Mutation_p.I3516M|CSMD3_uc011lhx.1_Missense_Mutation_p.I3387M	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3556	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TAATAAGATATATGCGTAACA	0.333000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			112	69					0	0	0	0
PLEC	5339	broad.mit.edu	37	8	144995795	144995795	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:144995795C>A	uc003zaf.1	-	32	8775	c.8605G>T	c.(8605-8607)GCG>TCG	p.A2869S	PLEC_uc003zab.1_Missense_Mutation_p.A2732S|PLEC_uc003zac.1_Missense_Mutation_p.A2736S|PLEC_uc003zad.2_Missense_Mutation_p.A2732S|PLEC_uc003zae.1_Missense_Mutation_p.A2700S|PLEC_uc003zag.1_Missense_Mutation_p.A2710S|PLEC_uc003zah.2_Missense_Mutation_p.A2718S|PLEC_uc003zaj.2_Missense_Mutation_p.A2759S	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2869	Globular 2.|Plectin 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCCGCCTGCGCCTCCAGCAGG	0.672000													57	55					2.73381e-35	3.87289e-35	1	0
PLEC	5339	broad.mit.edu	37	8	144998152	144998152	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:144998152C>A	uc003zaf.1	-	31	6526	c.6356G>T	c.(6355-6357)CGG>CTG	p.R2119L	PLEC_uc003zab.1_Missense_Mutation_p.R1982L|PLEC_uc003zac.1_Missense_Mutation_p.R1986L|PLEC_uc003zad.2_Missense_Mutation_p.R1982L|PLEC_uc003zae.1_Missense_Mutation_p.R1950L|PLEC_uc003zag.1_Missense_Mutation_p.R1960L|PLEC_uc003zah.2_Missense_Mutation_p.R1968L|PLEC_uc003zaj.2_Missense_Mutation_p.R2009L	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2119	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CTCACGGCGCCGCCGCTCCTC	0.731000													24	14					4.7796e-09	5.45517e-09	1	0
IFNA4	3441	broad.mit.edu	37	9	21187529	21187529	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:21187529A>G	uc003zon.2	-	1	70	c.2T>C	c.(1-3)ATG>ACG	p.M1T		NM_021068	NP_066546	P05014	IFNA4_HUMAN	interferon, alpha 4 precursor	1					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;2.69e-202)|Lung(24;2.26e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		GGACAGGGCCATTGGGATGTT	0.473000													27	17					0	0	0	0
MTAP	4507	broad.mit.edu	37	9	21854825	21854825	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:21854825G>A	uc003zph.2	+	6	759	c.646G>A	c.(646-648)GCC>ACC	p.A216T	MTAP_uc003zpi.1_Intron|MTAP_uc010mit.2_RNA|MTAP_uc011lnk.1_Missense_Mutation_p.A233T|MTAP_uc011lnl.1_Missense_Mutation_p.A149T	NM_002451	NP_002442	Q13126	MTAP_HUMAN	5'-methylthioadenosine phosphorylase	216					nucleoside metabolic process	cytoplasm	phosphorylase activity|S-methyl-5-thioadenosine phosphorylase activity			central_nervous_system(1)	1		all_cancers(5;0)|Hepatocellular(5;0.00162)|Colorectal(97;0.173)		GBM - Glioblastoma multiforme(3;0)|Lung(24;2.24e-57)|LUSC - Lung squamous cell carcinoma(38;1.97e-36)|STAD - Stomach adenocarcinoma(4;3.26e-05)|OV - Ovarian serous cystadenocarcinoma(39;0.00931)|COAD - Colon adenocarcinoma(8;0.15)	Adenine(DB00173)	CGCAAGTATCGCCATGGCGAC	0.498000													21	63					0	0	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971000	21971000	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:21971000C>A	uc003zpk.2	-	2	570	c.358G>T	c.(358-360)GAG>TAG	p.E120*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_3'UTR	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	120	ANK 4.		E -> A (in non-small cell lung carcinoma).|E -> K (in non-small cell lung carcinoma).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(13)|p.E120*(8)|p.E120K(4)|p.E120A(1)|p.A118fs*10(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		TGGCCCAGCTCCTCAGCCAGG	0.726000		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			57	29					6.20943e-19	7.83456e-19	1	0
PCSK5	5125	broad.mit.edu	37	9	78710973	78710973	+	Silent	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:78710973G>T	uc004ajz.2	+	8	1600	c.1062G>T	c.(1060-1062)ACG>ACT	p.T354T	PCSK5_uc004ajy.2_Silent_p.T354T|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	354	Catalytic.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						GTTCATCCACGCTGGCCACAA	0.478000													30	45					2.20262e-25	2.86874e-25	1	0
PRUNE2	158471	broad.mit.edu	37	9	79320143	79320143	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:79320143C>A	uc010mpk.2	-	8	7171	c.7047G>T	c.(7045-7047)TGG>TGT	p.W2349C	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2349					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CAAAATCACCCCACGAGGCTT	0.468000													100	134					1.73885e-55	2.62452e-55	1	0
FAM75C1	441452	broad.mit.edu	37	9	90536468	90536468	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:90536468C>A	uc010mqi.2	+	4	1675	c.1646C>A	c.(1645-1647)ACC>AAC	p.T549N	FAM75C1_uc004apq.3_Missense_Mutation_p.T532N	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CTGGGGGCGACCTCTGAGGAG	0.517000													78	58					1.53041e-28	2.05113e-28	1	0
Unknown	0	broad.mit.edu	37	9	90744987	90744988	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:90744987_90744988GG>TT	uc011lti.1	-	4	2993_2994	c.2964_2965CC>AA	c.(2962-2967)ACCCGT>ACAAGT	p.R989S	uc004apx.1_5'Flank					SubName: Full=cDNA FLJ59639;																		TCATTCTGACGGGTGTCTTCTG	0.431000													55	80					0	0	0	0
OR13C2	392376	broad.mit.edu	37	9	107367223	107367223	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:107367223C>A	uc011lvq.1	-	1	686	c.686G>T	c.(685-687)AGC>ATC	p.S229I		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTCGGAAGAGCTAATTTTGAA	0.418000													78	150					3.80207e-26	4.99215e-26	1	0
SVEP1	79987	broad.mit.edu	37	9	113228230	113228230	+	Silent	SNP	T	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:113228230T>A	uc010mtz.2	-	18	3574	c.3237A>T	c.(3235-3237)CCA>CCT	p.P1079P	SVEP1_uc010mua.1_Silent_p.P1079P	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1079					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AACCAAATTTTGGCTGATAAG	0.448000													15	31					0	0	0	0
DAB2IP	153090	broad.mit.edu	37	9	124528979	124528979	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:124528979A>C	uc004bln.2	+	9	1652	c.1583A>C	c.(1582-1584)AAG>ACG	p.K528T	DAB2IP_uc004blo.2_Missense_Mutation_p.K432T|DAB2IP_uc004blp.2_5'Flank	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	556	Ras-GAP.				activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						CTCATCGCCAAGGTCACCCAG	0.637000													201	259					0	0	0	0
ASMTL	8623	broad.mit.edu	37	X	1540721	1540721	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:1540721C>G	uc004cpx.1	-	9	1186	c.1075G>C	c.(1075-1077)GAG>CAG	p.E359Q	ASMTL_uc011mhe.1_Missense_Mutation_p.E283Q|ASMTL_uc004cpy.1_Missense_Mutation_p.E343Q|ASMTL_uc011mhf.1_Missense_Mutation_p.E301Q	NM_004192	NP_004183	O95671	ASML_HUMAN	acetylserotonin O-methyltransferase-like	359	ASMT-like.				melatonin biosynthetic process	cytoplasm	acetylserotonin O-methyltransferase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TTCGCTGTCTCTGTGTTACTG	0.478000													32	149					0	0	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27998998	27998998	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:27998998G>C	uc004dbx.1	-	1	569	c.454C>G	c.(454-456)CGA>GGA	p.R152G		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	152										ovary(3)|skin(1)	4						CAGCGAGATCGGGGCAGGGCA	0.567000													6	8					0	0	0	0
MAGEB3	4114	broad.mit.edu	37	X	30254871	30254871	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:30254871C>G	uc004dca.1	+	5	1567	c.830C>G	c.(829-831)CCA>CGA	p.P277R		NM_002365	NP_002356	O15480	MAGB3_HUMAN	melanoma antigen family B, 3	277	MAGE.										0						CTGTGGGGTCCAAGAGCCCAT	0.498000													11	14					0	0	0	0
FAM47C	442444	broad.mit.edu	37	X	37026872	37026873	+	Missense_Mutation	DNP	CC	GA	GA			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:37026872_37026873CC>GA	uc004ddl.1	+	1	403_404	c.389_390CC>GA	c.(388-390)CCC>CGA	p.P130R		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	130										ovary(3)	3						ACCAAGCATCCCTTGGCCATGT	0.569000													20	18					0	0	0	0
ZNF81	347344	broad.mit.edu	37	X	47775780	47775780	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:47775780G>T	uc010nhy.1	+	6	2103	c.1735G>T	c.(1735-1737)GAG>TAG	p.E579*		NM_007137	NP_009068	P51508	ZNF81_HUMAN	zinc finger protein 81	579						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(315;0.0973)				TCATACTACAGAGAAGCCTTA	0.418000													12	8					1.5842e-08	1.78915e-08	1	0
KDM5C	8242	broad.mit.edu	37	X	53239927	53239927	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:53239927C>A	uc004drz.2	-	11	2047	c.1514G>T	c.(1513-1515)GGC>GTC	p.G505V	KDM5C_uc011moc.1_RNA|KDM5C_uc011mod.1_Missense_Mutation_p.G438V|KDM5C_uc004dsa.2_Missense_Mutation_p.G504V	NM_004187	NP_004178	P41229	KDM5C_HUMAN	jumonji, AT rich interactive domain 1C isoform	505	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			kidney(9)|ovary(5)|salivary_gland(1)|autonomic_ganglia(1)|haematopoietic_and_lymphoid_tissue(1)|oesophagus(1)	18						GAAGACCATGCCCACGTAGAG	0.517000			N|F|S		clear cell renal carcinoma								23	14					4.26978e-12	5.01505e-12	1	0
AR	367	broad.mit.edu	37	X	66905872	66905872	+	Missense_Mutation	SNP	G	T	T	rs137852569		TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:66905872G>T	uc004dwu.1	+	3	2904	c.1789G>T	c.(1789-1791)GCC>TCC	p.A597S	AR_uc011mpd.1_Missense_Mutation_p.A597S|AR_uc011mpe.1_RNA|AR_uc011mpf.1_Missense_Mutation_p.A597S|AR_uc004dwv.1_Missense_Mutation_p.A65S	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	596	NR C4-type.|Interaction with HIPK3 (By similarity).|Nuclear receptor.		A -> T (in AIS; abolishes dimerization).		cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	GTACCTGTGCGCCAGCAGAAA	0.413000									Androgen_Insensitivity_Syndrome				28	17					2.85442e-18	3.54606e-18	1	0
CSTF2	1478	broad.mit.edu	37	X	100087825	100087825	+	Silent	SNP	C	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:100087825C>T	uc004egh.2	+	10	1192	c.1134C>T	c.(1132-1134)CCC>CCT	p.P378P	CSTF2_uc010nnd.2_Silent_p.P398P|CSTF2_uc004egi.2_Silent_p.P361P	NM_001325	NP_001316	P33240	CSTF2_HUMAN	cleavage stimulation factor subunit 2	378	Gly/Pro-rich.				mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cleavage body|mRNA cleavage and polyadenylation specificity factor complex	nucleotide binding|protein binding|protein binding|RNA binding			skin(1)	1						GGCCATTACCCGAGCCCAGAC	0.582000													13	5					0	0	0	0
BHLHB9	80823	broad.mit.edu	37	X	102004119	102004119	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:102004119G>A	uc010nog.2	+	4	767	c.196G>A	c.(196-198)GTT>ATT	p.V66I	BHLHB9_uc011mrq.1_Missense_Mutation_p.V66I|BHLHB9_uc011mrr.1_Missense_Mutation_p.V66I|BHLHB9_uc011mrs.1_Missense_Mutation_p.V66I|BHLHB9_uc011mrt.1_Missense_Mutation_p.V66I|BHLHB9_uc004ejo.2_Missense_Mutation_p.V66I|BHLHB9_uc011mru.1_Missense_Mutation_p.V66I|BHLHB9_uc011mrv.1_Missense_Mutation_p.V66I	NM_001142526	NP_001135998	Q6PI77	BHLH9_HUMAN	basic helix-loop-helix domain containing, class	66						cytoplasm|nucleus	binding			ovary(2)	2						TAAGAACAAGGTTGTTGCTGA	0.517000													44	24					0	0	0	0
PLS3	5358	broad.mit.edu	37	X	114856588	114856588	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:114856588A>G	uc004eqd.2	+	3	494	c.104A>G	c.(103-105)TAT>TGT	p.Y35C	PLS3_uc010nqf.2_RNA|PLS3_uc010nqg.2_Missense_Mutation_p.Y35C|PLS3_uc011mtf.1_Missense_Mutation_p.Y13C|PLS3_uc004eqe.2_Missense_Mutation_p.Y35C|PLS3_uc011mtg.1_Missense_Mutation_p.Y35C|PLS3_uc011mth.1_5'UTR	NM_005032	NP_005023	P13797	PLST_HUMAN	plastin 3	35	1 (By similarity).|EF-hand 1.					cytoplasm	actin binding|calcium ion binding			lung(1)|breast(1)	2						ATTTGTGACTATGAACTTCAT	0.353000													12	30					0	0	0	0
VGLL1	51442	broad.mit.edu	37	X	135630910	135630910	+	Missense_Mutation	SNP	G	T	T	rs140464879	byFrequency	TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:135630910G>T	uc004ezy.2	+	3	547	c.377G>T	c.(376-378)CGG>CTG	p.R126L	MIR934_hsa-mir-934|MI0005756_5'Flank	NM_016267	NP_057351	Q99990	VGLL1_HUMAN	vestigial like 1	126					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	transcription coactivator activity				0	Acute lymphoblastic leukemia(192;0.000127)					GCCTCTGTTCGGCCTGGGGAG	0.622000													173	122					2.09492e-81	3.22218e-81	1	0
CD40LG	959	broad.mit.edu	37	X	135741519	135741519	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:135741519C>A	uc004faa.2	+	5	803	c.731C>A	c.(730-732)CCA>CAA	p.P244Q	CD40LG_uc010nsd.2_Missense_Mutation_p.P223Q	NM_000074	NP_000065	P29965	CD40L_HUMAN	CD40 ligand	244	Extracellular (Potential).				anti-apoptosis|B cell proliferation|inflammatory response|isotype switching|leukocyte cell-cell adhesion|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of interleukin-12 production	extracellular space|integral to plasma membrane|soluble fraction	CD40 receptor binding|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)				Atorvastatin(DB01076)	GTGACTGATCCAAGCCAAGTG	0.522000									Immune_Deficiency_with_Hyper-IgM				85	46					1.76421e-39	2.53262e-39	1	0
RAB39B	116442	broad.mit.edu	37	X	154490409	154490409	+	Silent	SNP	G	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:154490409G>T	uc004fne.2	-	2	600	c.321C>A	c.(319-321)ACC>ACA	p.T107T		NM_171998	NP_741995	Q96DA2	RB39B_HUMAN	RAB39B, member RAS oncogene family	107					protein transport|small GTPase mediated signal transduction|synapse organization|vesicle-mediated transport	Golgi apparatus|plasma membrane	GTP binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CGTGTACTTTGGTCTCTTCTA	0.493000													133	67					5.241e-64	7.98512e-64	1	0
Unknown	0	broad.mit.edu	37	1	149091491	149091492	+	IGR	INS	-	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:149091491_149091492insA								LOC645166 (138437 upstream) : LOC388692 (187984 downstream)																							AGAGAAAAGCCAACGTGTTGTT	0.431													---	---	---							
COPA	1314	broad.mit.edu	37	1	160283779	160283779	+	Splice_Site	DEL	C	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:160283779delC	uc009wti.2	-	9	1236	c.842_splice	c.e9+1	p.R281_splice	COPA_uc001fvv.3_Splice_Site_p.R281_splice|COPA_uc009wtj.1_Splice_Site_p.R227_splice	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform						COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GACTACCTTACCGCTTAGACA	0.408													---	---	---							
NUF2	83540	broad.mit.edu	37	1	163306634	163306634	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:163306634delA	uc001gcq.1	+	6	731	c.431delA	c.(430-432)CAAfs	p.Q144fs	NUF2_uc001gcp.2_Frame_Shift_Del_p.Q144fs|NUF2_uc001gcr.1_Frame_Shift_Del_p.Q144fs|NUF2_uc009wvc.1_Frame_Shift_Del_p.Q144fs	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	144	Interaction with the N-terminus of NDC80.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					TTTCTTTGGCAATATGTAAGA	0.318													---	---	---							
Unknown	0	broad.mit.edu	37	1	166245539	166245539	+	IGR	DEL	C	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:166245539delC								FAM78B (109333 upstream) : FMO9P (327614 downstream)																							GAAAATCTTTCCCATCAAACC	0.512													---	---	---							
LMOD1	25802	broad.mit.edu	37	1	201869086	201869087	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:201869086_201869087insA	uc001gxb.2	-	2	1302_1303	c.1054_1055insT	c.(1054-1056)ACTfs	p.T352fs	LMOD1_uc010ppu.1_Frame_Shift_Ins_p.T301fs	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	352					muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						CAGAGCCTCAGTAAACCGGACC	0.525													---	---	---							
INTS7	25896	broad.mit.edu	37	1	212154469	212154478	+	Frame_Shift_Del	DEL	TGACTACAAA	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:212154469_212154478delTGACTACAAA	uc001hiw.1	-	10	1292_1301	c.1187_1196delTTTGTAGTCA	c.(1186-1197)CTTTGTAGTCAAfs	p.L396fs	INTS7_uc009xdb.1_Frame_Shift_Del_p.L396fs|INTS7_uc001hix.1_Frame_Shift_Del_p.L272fs|INTS7_uc001hiy.1_Frame_Shift_Del_p.L396fs|INTS7_uc010pta.1_Frame_Shift_Del_p.L347fs	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	396_399					snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		ACTATCATCTTGACTACAAAGTACCAGTAG	0.367													---	---	---							
TRIM58	25893	broad.mit.edu	37	1	248020819	248020819	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr1:248020819delC	uc001ido.2	+	1	319	c.271delC	c.(271-273)CCCfs	p.P91fs		NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	91	B box-type.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			gggcgcggggcccggggcgcg	0.667													---	---	---							
FZD8	8325	broad.mit.edu	37	10	35930412	35930413	+	5'Flank	INS	-	G	G	rs142623421	by1000genomes	TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr10:35930412_35930413insG	uc001iyz.1	-							NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor						axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						AGAGGGGTGCCGGGGGGGGGGC	0.703													---	---	---							
TTC18	118491	broad.mit.edu	37	10	75072315	75072315	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr10:75072315delG	uc009xrc.2	-	11	1330	c.1209delC	c.(1207-1209)TCCfs	p.S403fs	TTC18_uc001jty.2_Frame_Shift_Del_p.S403fs|TTC18_uc009xrd.1_Frame_Shift_Del_p.S211fs	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	403							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					CAGCTTGTTTGGACAGCAGAG	0.373													---	---	---							
MUC5B	727897	broad.mit.edu	37	11	1270397	1270402	+	In_Frame_Del	DEL	CCACGG	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:1270397_1270402delCCACGG	uc009ycr.1	+	51	13832_13837	c.13706_13711delCCACGG	c.(13705-13713)ACCACGGCC>ACC	p.TA4572del	MUC5B_uc001ltb.2_In_Frame_Del_p.TA4102del	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4099_4100	7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACCTCCAGGACCACGGCCACGGCCAC	0.704													---	---	---							
HSD17B12	51144	broad.mit.edu	37	11	43876270	43876270	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:43876270delC	uc001mxq.3	+	10	925	c.690delC	c.(688-690)GTCfs	p.V230fs		NM_016142	NP_057226	Q53GQ0	DHB12_HUMAN	hydroxysteroid (17-beta) dehydrogenase 12	230					long-chain fatty-acyl-CoA biosynthetic process|steroid biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	estradiol 17-beta-dehydrogenase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity				0						TCTAGAGTGTCCTGCCATACT	0.463													---	---	---							
OR8H2	390151	broad.mit.edu	37	11	55872764	55872765	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:55872764_55872765insT	uc010riy.1	+	1	246_247	c.246_247insT	c.(244-249)ACCTTAfs	p.T82fs		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	82_83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					CACCTAAAACCTTAGCGAACTT	0.436										HNSCC(53;0.14)			---	---	---							
MS4A2	2206	broad.mit.edu	37	11	59857864	59857865	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:59857864_59857865insT	uc001nop.2	+	3	344_345	c.242_243insT	c.(241-243)TCTfs	p.S81fs	MS4A2_uc009ymu.2_Frame_Shift_Ins_p.S81fs	NM_000139	NP_000130	Q01362	FCERB_HUMAN	membrane-spanning 4-domains, subfamily A, member	81	Extracellular (Potential).				cell proliferation|humoral immune response	integral to plasma membrane	calcium channel activity			ovary(1)	1		all_epithelial(135;0.245)			Omalizumab(DB00043)	GTTGTCTGCTCTGTACTTGATA	0.322													---	---	---							
Unknown	0	broad.mit.edu	37	11	87191989	87191989	+	IGR	DEL	T	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr11:87191989delT								TMEM135 (157421 upstream) : RAB38 (654442 downstream)																							CTCACCCAGCTTTTTTTTGCC	0.443													---	---	---							
ATF7	11016	broad.mit.edu	37	12	53994853	53994853	+	5'Flank	DEL	C	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr12:53994853delC	uc001sdy.2	-						ATF7_uc010sok.1_Intron|ATF7_uc001sdz.2_Intron|ATF7_uc010sol.1_Intron|ATF7_uc001sea.3_Intron|ATF7_uc001seb.3_Intron	NM_001130059	NP_001123531	P17544	ATF7_HUMAN	activating transcription factor 7 isoform 1						interspecies interaction between organisms	cytoplasm|nuclear periphery|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						TATGCTGGAGCAAAAAAAAAA	0.418													---	---	---							
Unknown	0	broad.mit.edu	37	12	68881564	68881564	+	IGR	DEL	C	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr12:68881564delC								MDM1 (155403 upstream) : RAP1B (123088 downstream)																							TCATTGTCATCATGTCCTCCT	0.597													---	---	---							
Unknown	0	broad.mit.edu	37	15	23605891	23605893	+	5'Flank	DEL	AGG	-	-	rs2083894		TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr15:23605891_23605893delAGG	uc001ywe.2	-											DQ578839																		TCGTTGAAGAAGGAGAAGAAGCA	0.581													---	---	---							
Unknown	0	broad.mit.edu	37	15	101094072	101094073	+	IGR	DEL	CA	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr15:101094072_101094073delCA								LASS3 (9147 upstream) : LINS1 (15363 downstream)																							AACATGTTGTcacacacacaca	0.332													---	---	---							
IL32	9235	broad.mit.edu	37	16	3119297	3119298	+	Frame_Shift_Ins	INS	-	G	G	rs144971189	by1000genomes	TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr16:3119297_3119298insG	uc002cto.2	+	6	857_858	c.646_647insG	c.(646-648)CGGfs	p.R216fs	IL32_uc002ctk.2_Frame_Shift_Ins_p.R113fs|IL32_uc010uwp.1_Frame_Shift_Ins_p.R150fs|IL32_uc010btb.2_Frame_Shift_Ins_p.R160fs|IL32_uc002ctl.2_Frame_Shift_Ins_p.R170fs|IL32_uc002ctm.2_Frame_Shift_Ins_p.R170fs|IL32_uc002ctn.2_Frame_Shift_Ins_p.R170fs|IL32_uc002cts.3_Frame_Shift_Ins_p.R170fs|IL32_uc002ctp.2_Frame_Shift_Ins_p.R150fs|IL32_uc002ctq.2_Frame_Shift_Ins_p.R216fs|IL32_uc002ctr.2_Frame_Shift_Ins_p.R150fs|IL32_uc002ctt.2_Frame_Shift_Ins_p.R170fs|IL32_uc010uwr.1_Frame_Shift_Ins_p.R130fs|IL32_uc002ctu.2_Frame_Shift_Ins_p.R161fs	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	216					cell adhesion|defense response|immune response	extracellular space	cytokine activity	p.D172fs*12(1)		pancreas(1)	1						CGGAGCCCCACGGGGGGACAAG	0.579													---	---	---							
TP53	7157	broad.mit.edu	37	17	7578526	7578526	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:7578526delC	uc002gim.2	-	5	598	c.404delG	c.(403-405)TGCfs	p.C135fs	TP53_uc002gig.1_Frame_Shift_Del_p.C135fs|TP53_uc002gih.2_Frame_Shift_Del_p.C135fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Frame_Shift_Del_p.C3fs|TP53_uc010cng.1_Frame_Shift_Del_p.C3fs|TP53_uc002gii.1_Frame_Shift_Del_p.C3fs|TP53_uc010cnh.1_Frame_Shift_Del_p.C135fs|TP53_uc010cni.1_Frame_Shift_Del_p.C135fs|TP53_uc002gij.2_Frame_Shift_Del_p.C135fs|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Frame_Shift_Del_p.C42fs|TP53_uc002gio.2_Frame_Shift_Del_p.C3fs|TP53_uc010vug.1_Frame_Shift_Del_p.C96fs	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	135	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		C -> S (in sporadic cancers; somatic mutation).|C -> Y (in sporadic cancers; somatic mutation; decreased E6-mediated binding to E6-AP).|C -> T (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|C -> R (in sporadic cancers; somatic mutation).|C -> W (in sporadic cancers; somatic mutation).|C -> G (in sporadic cancers; somatic mutation).|C -> F (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.C135Y(51)|p.C135F(34)|p.C135W(19)|p.C135S(10)|p.C135fs*35(9)|p.0?(7)|p.C135*(7)|p.C135G(6)|p.C135R(6)|p.C135C(5)|p.C135fs*14(2)|p.N131fs*27(2)|p.F134_T140>S(1)|p.K132_A138delKMFCQLA(1)|p.S127_Q136del10(1)|p.C135T(1)|p.V73fs*9(1)|p.C135fs*36(1)|p.C135fs*15(1)|p.Y126fs*11(1)|p.C135_A138delCQLA(1)|p.C42Y(1)|p.C3Y(1)|p.M133fs*13(1)|p.C135_T140delCQLAKT(1)|p.Q136fs*13(1)|p.C135_Q136insXXXXXX(1)|p.C135_Q136insX(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GGCCAGTTGGCAAAACATCTT	0.572		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			---	---	---							
C17orf82	388407	broad.mit.edu	37	17	59489871	59489877	+	Frame_Shift_Del	DEL	GGCCTCG	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:59489871_59489877delGGCCTCG	uc002izh.1	+	1	760_766	c.535_541delGGCCTCG	c.(535-543)GGCCTCGGGfs	p.G179fs		NM_203425	NP_982249	Q86X59	CQ082_HUMAN	hypothetical protein LOC388407	179_181											0						AGCCCGCCCAGGCCTCGGGCCTCGGCA	0.734													---	---	---							
CCDC57	284001	broad.mit.edu	37	17	80173535	80173535	+	5'Flank	DEL	C	-	-	rs112012232		TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr17:80173535delC	uc002kdz.1	-						CCDC57_uc002kdx.1_5'Flank	NM_198082	NP_932348	Q2TAC2	CCD57_HUMAN	coiled-coil domain containing 57											ovary(2)	2	Breast(20;0.00285)|all_neural(118;0.0878)|all_lung(278;0.0949)|Lung NSC(278;0.128)|Ovarian(332;0.227)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0253)			tccttccctgccccccacact	0.313													---	---	---							
Unknown	0	broad.mit.edu	37	18	15198397	15198397	+	IGR	DEL	A	-	-	rs34382864		TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr18:15198397delA								ANKRD30B (345660 upstream) : LOC644669 (115158 downstream)																							AGCTGAAGACAAAAAAAAAAA	0.463													---	---	---							
Unknown	0	broad.mit.edu	37	19	12305944	12305944	+	RNA	DEL	G	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:12305944delG	uc002mtk.1	+	1		c.92delG			uc010dyq.1_RNA|uc002mtj.1_RNA					Homo sapiens cDNA FLJ13242 fis, clone OVARC1000578.																		CCAGACACCTGGAAGCCGGAA	0.637													---	---	---							
PSG9	5678	broad.mit.edu	37	19	43772208	43772210	+	In_Frame_Del	DEL	AGA	-	-	rs144736946		TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:43772208_43772210delAGA	uc002owd.3	-	2	255_257	c.156_158delTCT	c.(154-159)CTTCTA>CTA	p.52_53LL>L	PSG9_uc002owe.3_In_Frame_Del_p.52_53LL>L|PSG9_uc010xwm.1_In_Frame_Del_p.52_53LL>L|PSG9_uc002owf.3_In_Frame_Del_p.52_53LL>L|PSG9_uc002owg.2_In_Frame_Del_p.52_53LL>L|PSG9_uc002owh.2_In_Frame_Del_p.52_53LL>L	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	52_53	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GTGGACAAGTAGAAGAACATCCT	0.473													---	---	---							
ZNF222	7673	broad.mit.edu	37	19	44536355	44536356	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr19:44536355_44536356delTG	uc002oyc.2	+	4	711_712	c.528_529delTG	c.(526-531)GATGTGfs	p.D176fs	ZNF284_uc010ejd.2_Intron|ZNF222_uc002oye.2_Frame_Shift_Del_p.D216fs|ZNF222_uc002oyd.2_Frame_Shift_Del_p.D122fs	NM_013360	NP_037492	Q9UK12	ZN222_HUMAN	zinc finger protein 222 isoform 2	176_177	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Prostate(69;0.0435)				ATAAGTGTGATGTGTGTGGTAA	0.441													---	---	---							
NEB	4703	broad.mit.edu	37	2	152427093	152427094	+	Frame_Shift_Ins	INS	-	C	C			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr2:152427093_152427094insC	uc010fnx.2	-	80	12123_12124	c.11932_11933insG	c.(11932-11934)GATfs	p.D3978fs	NEB_uc002txr.2_Frame_Shift_Ins_p.D401fs	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3978	Nebulin 108.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTTCATTTCATCCCAGCCCTCA	0.480													---	---	---							
Unknown	0	broad.mit.edu	37	22	42720032	42720033	+	IGR	INS	-	GGT	GGT			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr22:42720032_42720033insGGT								TCF20 (108587 upstream) : NFAM1 (56382 downstream)																							gtggtggtggtggtgatggagg	0.000													---	---	---							
KIAA0226	9711	broad.mit.edu	37	3	197427677	197427679	+	In_Frame_Del	DEL	GGA	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr3:197427677_197427679delGGA	uc003fyc.2	-	7	1249_1251	c.1066_1068delTCC	c.(1066-1068)TCCdel	p.S359del	KIAA0226_uc003fyd.3_In_Frame_Del_p.S299del|KIAA0226_uc003fye.1_In_Frame_Del_p.S66del|KIAA0226_uc003fyf.2_In_Frame_Del_p.S192del|KIAA0226_uc003fyg.2_In_Frame_Del_p.S352del	NM_014687	NP_055502	Q92622	RUBIC_HUMAN	hypothetical protein LOC9711 isoform 2.	359	Ser-rich.				autophagy|endocytosis|negative regulation of autophagy|negative regulation of endocytosis	early endosome|late endosome|lysosome	protein binding				0	all_cancers(143;8.26e-10)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.0446)		GGGAGCTGCTGGAGGAGAACAAA	0.596													---	---	---							
CRIPAK	285464	broad.mit.edu	37	4	1389382	1389382	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:1389382delC	uc003gdf.2	+	1	4043	c.1083delC	c.(1081-1083)TGCfs	p.C361fs		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	361					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			ATGTGGAGTGCCCGCCTGCTC	0.667													---	---	---							
CRIPAK	285464	broad.mit.edu	37	4	1389392	1389393	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:1389392_1389393delCA	uc003gdf.2	+	1	4053_4054	c.1093_1094delCA	c.(1093-1095)CACfs	p.H365fs		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	365					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CCCGCCTGCTCACACACGTGCC	0.658													---	---	---							
TLR2	7097	broad.mit.edu	37	4	154625775	154625775	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr4:154625775delC	uc003inq.2	+	3	1935	c.1716delC	c.(1714-1716)GGCfs	p.G572fs	TLR2_uc003inr.2_Frame_Shift_Del_p.G572fs|TLR2_uc003ins.2_Frame_Shift_Del_p.G572fs	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	572	Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				ATGTGCGTGGCCAGCAGGTTC	0.552													---	---	---							
PRR16	51334	broad.mit.edu	37	5	120022149	120022151	+	In_Frame_Del	DEL	TGA	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:120022149_120022151delTGA	uc003ksq.2	+	2	823_825	c.660_662delTGA	c.(658-663)TGTGAT>TGT	p.D221del	PRR16_uc003ksp.2_In_Frame_Del_p.D198del|PRR16_uc003ksr.2_In_Frame_Del_p.D151del	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	221	Pro-rich.									pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		GTCCTGACTGTGATACCCGGTAT	0.498													---	---	---							
ZNF608	57507	broad.mit.edu	37	5	124036938	124036943	+	In_Frame_Del	DEL	CTGGCA	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:124036938_124036943delCTGGCA	uc003ktq.1	-	2	1049_1054	c.926_931delTGCCAG	c.(925-933)GTGCCAGCG>GCG	p.VP309del	ZNF608_uc003ktr.1_RNA|ZNF608_uc003kts.1_In_Frame_Del_p.VP309del|ZNF608_uc003ktt.1_In_Frame_Del_p.VP309del	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	309_310	Poly-Pro.					intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		GGTGGTGGCGCTGGCACTGTAAACAG	0.476													---	---	---							
ADAM19	8728	broad.mit.edu	37	5	156908860	156908860	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr5:156908860delG	uc003lwz.2	-	22	2706	c.2642delC	c.(2641-2643)CCAfs	p.P881fs	ADAM19_uc003lww.1_Intron|ADAM19_uc003lwy.2_Frame_Shift_Del_p.P480fs|ADAM19_uc011ddr.1_Frame_Shift_Del_p.P812fs	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	881	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGGCCGCAGTGGGGATGCACC	0.682													---	---	---							
Unknown	0	broad.mit.edu	37	7	2433787	2433788	+	IGR	INS	-	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:2433787_2433788insT								EIF3B (13412 upstream) : CHST12 (9435 downstream)																							ttttcttcttcttttttttttt	0.218													---	---	---							
AKAP9	10142	broad.mit.edu	37	7	91603084	91603085	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr7:91603084_91603085insA	uc003ulg.2	+	2	333_334	c.108_109insA	c.(106-111)CAGAAAfs	p.Q36fs	AKAP9_uc003uld.3_Frame_Shift_Ins_p.Q36fs|AKAP9_uc003ule.2_Frame_Shift_Ins_p.Q48fs|AKAP9_uc003ulf.2_Frame_Shift_Ins_p.Q36fs	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	48_49					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			CCAAGAAGCAGAAAAAAAAGAG	0.351			T	BRAF	papillary thyroid								---	---	---							
ZFHX4	79776	broad.mit.edu	37	8	77764404	77764405	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:77764404_77764405insT	uc003yav.2	+	10	5499_5500	c.5112_5113insT	c.(5110-5115)AGCTTGfs	p.S1704fs	ZFHX4_uc003yau.1_Frame_Shift_Ins_p.S1749fs|ZFHX4_uc003yaw.1_Frame_Shift_Ins_p.S1704fs	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1704_1705	Gln-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CGGAGTTCAGCTTGGGGCCAGA	0.510										HNSCC(33;0.089)			---	---	---							
RIMS2	9699	broad.mit.edu	37	8	105010427	105010427	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr8:105010427delT	uc003yls.2	+	16	2634	c.2393delT	c.(2392-2394)CTAfs	p.L798fs	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Frame_Shift_Del_p.L812fs|RIMS2_uc003ylq.2_Frame_Shift_Del_p.L812fs|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TTTCTTACTCTACCTCGCTCC	0.353										HNSCC(12;0.0054)			---	---	---							
Unknown	0	broad.mit.edu	37	9	67329457	67329457	+	IGR	DEL	G	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:67329457delG								AQP7P1 (39965 upstream) : FAM27B (463473 downstream)																							CAACTCCTGTGGCAGCTATCC	0.313													---	---	---							
PRUNE2	158471	broad.mit.edu	37	9	79324702	79324702	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:79324702delC	uc010mpk.2	-	8	2612	c.2488delG	c.(2488-2490)GACfs	p.D830fs		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	830					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TCATTCGGGTCCCTAACAGAA	0.443													---	---	---							
TSC1	7248	broad.mit.edu	37	9	135778029	135778047	+	Frame_Shift_Del	DEL	TCATGCTGCAGCTGTCTGA	-	-	rs118203681		TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chr9:135778029_135778047delTCATGCTGCAGCTGTCTGA	uc004cca.2	-	18	2570_2588	c.2336_2354delTCAGACAGCTGCAGCATGA	c.(2335-2355)ATCAGACAGCTGCAGCATGACfs	p.I779fs	TSC1_uc004ccb.3_Frame_Shift_Del_p.I778fs|TSC1_uc011mcq.1_Frame_Shift_Del_p.I728fs|TSC1_uc011mcr.1_Intron	NM_000368	NP_000359	Q92574	TSC1_HUMAN	tuberous sclerosis 1 protein isoform 1	779_785	Potential.				activation of Rho GTPase activity|cell cycle arrest|cell-matrix adhesion|insulin receptor signaling pathway|negative regulation of cell proliferation|negative regulation of protein ubiquitination|negative regulation of TOR signaling cascade|negative regulation of translation|positive regulation of focal adhesion assembly|regulation of phosphoprotein phosphatase activity|regulation of stress fiber assembly|rRNA export from nucleus	cell cortex|lamellipodium|membrane|TSC1-TSC2 complex	chaperone binding|protein N-terminus binding	p.?(1)		lung(4)|central_nervous_system(3)|breast(2)|haematopoietic_and_lymphoid_tissue(1)|urinary_tract(1)|skin(1)|ovary(1)|bone(1)	14				OV - Ovarian serous cystadenocarcinoma(145;4.32e-08)|Epithelial(140;2.72e-06)		TTCCTCTCGGTCATGCTGCAGCTGTCTGATCTGGCTGTG	0.521			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis		OREG0019577	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	---	---	---							
CXorf59	286464	broad.mit.edu	37	X	36122661	36122661	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:36122661delC	uc004ddk.1	+	8	1084	c.898delC	c.(898-900)CCCfs	p.P300fs		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	300						integral to membrane				central_nervous_system(1)	1						CAATAATATGCCCCCCATATG	0.353													---	---	---							
C1GALT1C1	29071	broad.mit.edu	37	X	119760791	119760798	+	Frame_Shift_Del	DEL	GGGTTTTA	-	-	rs56255076		TCGA-CV-7409-01A-31D-2229-08	TCGA-CV-7409-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	47fa56f1-0802-403a-a644-913f1a0fdeca	da9648a0-7446-4481-b8ab-ca9cc795e2dd	g.chrX:119760791_119760798delGGGTTTTA	uc004esy.2	-	3	571_578	c.224_231delTAAAACCC	c.(223-231)GTAAAACCCfs	p.V75fs	C1GALT1C1_uc004esz.2_Frame_Shift_Del_p.V75fs	NM_152692	NP_689905	Q96EU7	C1GLC_HUMAN	C1GALT1-specific chaperone 1	75_77	Lumenal (Potential).					integral to membrane					0						TCACATCTTTGGGTTTTACAAGGATAAT	0.399													---	---	---							
