Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
PTCHD2	57540	broad.mit.edu	37	1	11561740	11561740	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:11561740C>T	uc001ash.3	+	2	829	c.691C>T	c.(691-693)CGG>TGG	p.R231W	PTCHD2_uc001asi.1_Missense_Mutation_p.R231W	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	231	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CAAGAATGGGCGGTACCAGCC	0.692000													5	11					0	0	0	0
NECAP2	55707	broad.mit.edu	37	1	16774625	16774625	+	Silent	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:16774625G>A	uc001ayo.2	+	4	459	c.369G>A	c.(367-369)CAG>CAA	p.Q123Q	NECAP2_uc001ayp.3_RNA|NECAP2_uc010ocd.1_Silent_p.Q97Q|NECAP2_uc001ayq.2_Silent_p.Q123Q	NM_018090	NP_060560	Q9NVZ3	NECP2_HUMAN	NECAP endocytosis associated 2 isoform 1	123					endocytosis|protein transport	clathrin vesicle coat|coated pit|plasma membrane					0		Colorectal(325;0.000147)|Renal(390;0.00145)|Lung NSC(340;0.00215)|Breast(348;0.00224)|all_lung(284;0.00351)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(227;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|Kidney(64;0.000181)|KIRC - Kidney renal clear cell carcinoma(64;0.00268)|STAD - Stomach adenocarcinoma(196;0.012)|READ - Rectum adenocarcinoma(331;0.0649)		TTGCATTGCAGGACCATTTCA	0.522000													34	102					0	0	0	0
EPHA8	2046	broad.mit.edu	37	1	22921775	22921775	+	Silent	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:22921775G>A	uc001bfx.1	+	8	1781	c.1656G>A	c.(1654-1656)ACG>ACA	p.T552T		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	552	Helical; (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CGCTCATCACGGGCCTGGTGG	0.642000													9	37					0	0	0	0
PAQR7	164091	broad.mit.edu	37	1	26190068	26190068	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:26190068C>A	uc001bkx.2	-	2	930	c.263G>T	c.(262-264)CGG>CTG	p.R88L		NM_178422	NP_848509	Q86WK9	MPRA_HUMAN	progestin and adipoQ receptor family member VII	88	Helical; Name=1; (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane|plasma membrane	receptor activity|steroid binding			breast(3)	3		Colorectal(325;3.46e-05)|Lung NSC(340;0.00038)|all_lung(284;0.00051)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.16e-25)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000724)|BRCA - Breast invasive adenocarcinoma(304;0.000965)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0136)|READ - Rectum adenocarcinoma(331;0.0649)		GAGGGCCAGCCGCAGCAGCAG	0.602000													15	33					2.23348e-06	2.49986e-06	1	0
DHDDS	79947	broad.mit.edu	37	1	26795572	26795572	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:26795572G>C	uc001bml.2	+	9	1073	c.952G>C	c.(952-954)GAA>CAA	p.E318Q	DHDDS_uc001bmk.2_Missense_Mutation_p.E319Q|DHDDS_uc001bmm.2_Missense_Mutation_p.E225Q|DHDDS_uc001bmn.2_Missense_Mutation_p.E279Q|DHDDS_uc010ofd.1_Missense_Mutation_p.E284Q|uc001bmo.1_5'Flank	NM_205861	NP_995583	Q86SQ9	DHDDS_HUMAN	dehydrodolichyl diphosphate synthase isoform b	318							protein binding|transferase activity, transferring alkyl or aryl (other than methyl) groups			breast(3)	3		all_cancers(24;2.04e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.0161)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.166)|LUSC - Lung squamous cell carcinoma(448;0.239)		GCAGGCCTTGGAACTCAAGCG	0.652000													23	49					0	0	0	0
ASB17	127247	broad.mit.edu	37	1	76397744	76397744	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:76397744C>A	uc001dhe.1	-	1	373	c.233G>T	c.(232-234)GGA>GTA	p.G78V	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	78					intracellular signal transduction					ovary(1)	1						AAAACGGTATCCTGATTTTTC	0.383000													12	40					2.27111e-07	2.58949e-07	1	0
CTBS	1486	broad.mit.edu	37	1	85036299	85036299	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:85036299G>T	uc001dka.2	-	2	347	c.282C>A	c.(280-282)TAC>TAA	p.Y94*	CTBS_uc001dkc.2_Nonsense_Mutation_p.Y3*|CTBS_uc001dkd.2_5'UTR|CTBS_uc001dkb.2_5'UTR	NM_004388	NP_004379	Q01459	DIAC_HUMAN	chitobiase, di-N-acetyl- precursor	94						lysosome	cation binding				0				all cancers(265;0.00727)|Epithelial(280;0.0192)|OV - Ovarian serous cystadenocarcinoma(397;0.166)		TTGAATGAGCGTAGCACATAA	0.373000													16	54					2.32416e-17	3.15052e-17	1	0
COL24A1	255631	broad.mit.edu	37	1	86252053	86252053	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:86252053C>A	uc001dlj.2	-	48	4085	c.4043G>T	c.(4042-4044)GGA>GTA	p.G1348V	COL24A1_uc001dli.2_Missense_Mutation_p.G484V|COL24A1_uc010osd.1_Missense_Mutation_p.G648V|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1348	Collagen-like 15.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		GCCTTGAATTCCTGGGCTTCC	0.502000													21	69					1.77063e-15	2.36084e-15	1	0
OLFM3	118427	broad.mit.edu	37	1	102290583	102290583	+	Silent	SNP	T	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:102290583T>A	uc001duf.2	-	4	722	c.651A>T	c.(649-651)CTA>CTT	p.L217L	OLFM3_uc001dug.2_Silent_p.L197L|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Silent_p.L122L|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	217	Potential.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		CATACTCACTTAGCTTTTTCA	0.343000													9	27					0	0	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859287	149859287	+	Silent	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:149859287G>T	uc001ete.2	-	1	180	c.180C>A	c.(178-180)ACC>ACA	p.T60T	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	60					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GAATTTCCGCGGTCAGGTACT	0.662000													36	41					9.65963e-10	1.14973e-09	1	0
MTMR11	10903	broad.mit.edu	37	1	149906927	149906927	+	Silent	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:149906927C>A	uc001etl.3	-	5	671	c.420G>T	c.(418-420)CTG>CTT	p.L140L	MTMR11_uc001etm.1_Silent_p.L68L|MTMR11_uc010pbm.1_Silent_p.L112L|MTMR11_uc010pbn.1_5'UTR	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	140							phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			CAACTCTGAGCAGCCGGAAGT	0.557000													14	29					0.000566183	0.000598046	1	0
NPR1	4881	broad.mit.edu	37	1	153660623	153660623	+	Silent	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:153660623G>A	uc001fcs.3	+	15	2764	c.2343G>A	c.(2341-2343)CAG>CAA	p.Q781Q	NPR1_uc010pdz.1_Silent_p.Q527Q|NPR1_uc010pea.1_Silent_p.Q259Q	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	781	Cytoplasmic (Potential).|Protein kinase.				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	TGCTCATGCAGCGGTGCTGGG	0.622000													53	74					0	0	0	0
CACNA1E	777	broad.mit.edu	37	1	181546996	181546996	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:181546996G>A	uc001gow.2	+	4	772	c.607G>A	c.(607-609)GGG>AGG	p.G203R	CACNA1E_uc009wxr.2_Missense_Mutation_p.G110R|CACNA1E_uc009wxs.2_Missense_Mutation_p.G110R	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	203	Helical; Name=S4 of repeat I.|I.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GCTCGTGTCAGGGATACCTAG	0.527000													5	8					0	0	0	0
RNPEP	6051	broad.mit.edu	37	1	201974779	201974779	+	Missense_Mutation	SNP	G	A	A	rs148685424	byFrequency	TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:201974779G>A	uc001gxd.2	+	11	1917	c.1888G>A	c.(1888-1890)GCC>ACC	p.A630T	ELF3_uc001gxg.3_5'Flank|RNPEP_uc001gxe.2_Missense_Mutation_p.A331T|RNPEP_uc001gxf.2_Missense_Mutation_p.A499T	NM_020216	NP_064601	Q9H4A4	AMPB_HUMAN	arginyl aminopeptidase	630					leukotriene biosynthetic process		epoxide hydrolase activity|zinc ion binding			upper_aerodigestive_tract(1)	1				KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.005)		TGCATCCACCGCCTCCCAGCT	0.582000													25	99					0	0	0	0
CHIT1	1118	broad.mit.edu	37	1	203192647	203192647	+	Silent	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:203192647C>T	uc001gzn.2	-	5	552	c.456G>A	c.(454-456)AAG>AAA	p.K152K	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_RNA|CHIT1_uc009xal.1_5'Flank|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Silent_p.K143K	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	152					chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						TGAAGCGCTCCTTGTCTACGG	0.617000													18	74					0	0	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204214757	204214757	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:204214757G>A	uc001hau.2	-	14	2335	c.2018C>T	c.(2017-2019)ACC>ATC	p.T673I	PLEKHA6_uc009xau.1_5'Flank|PLEKHA6_uc009xav.1_5'Flank	NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	673										ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			GTGCTTGGCGGTGTCCGTGCC	0.607000													20	76					0	0	0	0
FLVCR1	28982	broad.mit.edu	37	1	213032065	213032065	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:213032065C>T	uc001hjt.2	+	1	469	c.271C>T	c.(271-273)CCG>TCG	p.P91S	LQK1_uc001hjr.3_5'Flank|LQK1_uc001hjs.3_5'Flank	NM_014053	NP_054772	Q9Y5Y0	FLVC1_HUMAN	feline leukemia virus subgroup C cellular	91					cell death|cellular iron ion homeostasis|heme export|transmembrane transport	integral to plasma membrane	heme transporter activity|protein binding|receptor activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.00733)|all cancers(67;0.013)|GBM - Glioblastoma multiforme(131;0.0845)|Epithelial(68;0.11)		AGCTGAGACCCCGGGGGCCGA	0.711000													4	9					0	0	0	0
RGS7	6000	broad.mit.edu	37	1	240979623	240979623	+	Silent	SNP	T	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:240979623T>C	uc001hyv.2	-	11	1107	c.777A>G	c.(775-777)CAA>CAG	p.Q259Q	RGS7_uc010pyh.1_Silent_p.Q233Q|RGS7_uc010pyj.1_Silent_p.Q175Q|RGS7_uc001hyu.2_Silent_p.Q259Q|RGS7_uc009xgn.1_Silent_p.Q206Q|RGS7_uc001hyw.2_Silent_p.Q259Q|RGS7_uc001hyt.2_Silent_p.Q91Q	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	259	G protein gamma.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TCACCTGTTGTTGTAACTCAT	0.373000													35	135					0	0	0	0
CEP170	9859	broad.mit.edu	37	1	243329016	243329016	+	Missense_Mutation	SNP	T	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:243329016T>G	uc001hzs.2	-	13	2654	c.2246A>C	c.(2245-2247)CAA>CCA	p.Q749P	CEP170_uc001hzt.2_Missense_Mutation_p.Q651P|CEP170_uc001hzu.2_Missense_Mutation_p.Q651P|CEP170_uc001hzv.1_Missense_Mutation_p.Q127P	NM_014812	NP_055627	Q5SW79	CE170_HUMAN	centrosomal protein 170kDa isoform alpha	749						centriole|microtubule|spindle				ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2	all_neural(11;0.101)	all_cancers(173;0.003)	all cancers(7;5.81e-06)|GBM - Glioblastoma multiforme(7;0.000443)|OV - Ovarian serous cystadenocarcinoma(106;0.0101)			TTCTTGTTGTTGAAGTTTTGC	0.378000													32	136					0	0	0	0
OR2G2	81470	broad.mit.edu	37	1	247752084	247752084	+	Silent	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:247752084C>T	uc010pyy.1	+	1	423	c.423C>T	c.(421-423)ATC>ATT	p.I141I		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	141	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TAATGCATATCCATCTCTGCA	0.572000													49	165					0	0	0	0
C10orf18	54906	broad.mit.edu	37	10	5791845	5791845	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr10:5791845G>T	uc001iij.2	+	15	7086	c.6461G>T	c.(6460-6462)CGG>CTG	p.R2154L	C10orf18_uc001iik.2_Missense_Mutation_p.R998L	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	2154										ovary(1)|central_nervous_system(1)	2						TTCCCAGGACGGTCAGCCTCC	0.423000													9	29					2.74318e-10	3.33003e-10	1	0
ZNF248	57209	broad.mit.edu	37	10	38121317	38121317	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr10:38121317C>A	uc001izd.1	-	6	1465	c.966G>T	c.(964-966)AAG>AAT	p.K322N	ZNF248_uc009xmc.2_Intron|ZNF248_uc001izb.2_Intron|ZNF248_uc001izc.2_Intron|ZNF248_uc010qeu.1_Missense_Mutation_p.K322N	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	322					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CACGGAGAATCTTTCTTGTGT	0.368000													27	59					4.22769e-11	5.29004e-11	1	0
LGI1	9211	broad.mit.edu	37	10	95518019	95518019	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr10:95518019C>A	uc001kjc.3	+	1	454	c.118C>A	c.(118-120)CCA>ACA	p.P40T	LGI1_uc010qnv.1_Missense_Mutation_p.P40T|LGI1_uc001kjd.3_Missense_Mutation_p.P40T|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_RNA	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	40	LRRNT.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				ACCAGCGAAGCCAAAATGCCC	0.448000													20	57					1.96292e-10	2.39477e-10	1	0
SLIT1	6585	broad.mit.edu	37	10	98764496	98764496	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr10:98764496G>T	uc001kmw.2	-	33	3916	c.3664C>A	c.(3664-3666)CGT>AGT	p.R1222S		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	1222	Laminin G-like.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		TAGCTGACACGCACATGGCCC	0.612000													15	31					6.72482e-11	8.24551e-11	1	0
PDCD11	22984	broad.mit.edu	37	10	105184972	105184972	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr10:105184972G>T	uc001kwy.1	+	20	3082	c.2995G>T	c.(2995-2997)GCC>TCC	p.A999S		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	999					mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		GGGGCCGGCTGCCAAGAGGAC	0.547000													11	22					4.3838e-07	4.95207e-07	1	0
PHRF1	57661	broad.mit.edu	37	11	592631	592631	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr11:592631G>T	uc001lqe.2	+	6	708	c.577G>T	c.(577-579)GAC>TAC	p.D193Y	PHRF1_uc010qwc.1_Missense_Mutation_p.D193Y|PHRF1_uc010qwd.1_Missense_Mutation_p.D192Y|PHRF1_uc010qwe.1_Missense_Mutation_p.D189Y|PHRF1_uc009ybz.1_5'UTR	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	193	PHD-type.						RNA polymerase binding|zinc ion binding				0						CGGCAGGAGCGACCGTGAGGA	0.647000													64	73					1.25089e-41	1.83865e-41	1	0
OR52A5	390054	broad.mit.edu	37	11	5153421	5153421	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr11:5153421G>T	uc010qyx.1	-	1	452	c.452C>A	c.(451-453)ACA>AAA	p.T151K		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		AGCCCTGAGTGTCACCCCAAG	0.478000													19	16					5.03518e-11	6.26829e-11	1	0
KCNC1	3746	broad.mit.edu	37	11	17757783	17757783	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr11:17757783C>G	uc001mnk.3	+	1	289	c.234C>G	c.(232-234)TGC>TGG	p.C78W	KCNC1_uc009yhc.1_Missense_Mutation_p.C78W	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	78	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						AGCTGCACTGCCCAGCCGACG	0.652000													16	28					0	0	0	0
OR4A15	81328	broad.mit.edu	37	11	55136039	55136039	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr11:55136039T>A	uc010rif.1	+	1	680	c.680T>A	c.(679-681)ATG>AAG	p.M227K		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	227	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGGCTTTCTATGATAGCTAAT	0.438000													15	46					0	0	0	0
OR5D16	390144	broad.mit.edu	37	11	55606467	55606467	+	Silent	SNP	T	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr11:55606467T>A	uc010rio.1	+	1	240	c.240T>A	c.(238-240)GCT>GCA	p.A80A		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	80	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				CCATCATTGCTCCCATGATGC	0.393000													85	158					0	0	0	0
OR8H1	219469	broad.mit.edu	37	11	56058246	56058246	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr11:56058246G>T	uc010rje.1	-	1	293	c.293C>A	c.(292-294)GCC>GAC	p.A98D		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					GAACATCTGGGCAAAGCAGCC	0.423000													50	114					2.17126e-26	3.06235e-26	1	0
NAALAD2	10003	broad.mit.edu	37	11	89885504	89885504	+	Silent	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr11:89885504C>T	uc001pdf.3	+	6	757	c.648C>T	c.(646-648)ATC>ATT	p.I216I	NAALAD2_uc009yvx.2_Silent_p.I216I|NAALAD2_uc009yvy.2_Silent_p.I216I|NAALAD2_uc001pdd.2_Silent_p.I216I|NAALAD2_uc001pde.2_Silent_p.I216I	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	216	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TAGGAATCATCTTGTACTCAG	0.438000													14	37					0	0	0	0
MMP1	4312	broad.mit.edu	37	11	102663440	102663440	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr11:102663440G>T	uc001phi.2	-	7	1072	c.929C>A	c.(928-930)CCG>CAG	p.P310Q	uc001phh.1_Intron|MMP1_uc010ruv.1_Missense_Mutation_p.P244Q	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	310	Hemopexin-like 1.				blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		CTCAACTTCCGGGTAGAAGGG	0.428000													21	52					1.10513e-12	1.40444e-12	1	0
DYNC2H1	79659	broad.mit.edu	37	11	102991188	102991188	+	Nonsense_Mutation	SNP	A	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr11:102991188A>T	uc001pho.2	+	7	1156	c.1012A>T	c.(1012-1014)AGA>TGA	p.R338*	DYNC2H1_uc001phn.1_Nonsense_Mutation_p.R338*|DYNC2H1_uc009yxe.1_Nonsense_Mutation_p.R338*	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	338	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		CTTGGCTATTAGAACAATTCA	0.328000													9	37					0	0	0	0
KCNA6	3742	broad.mit.edu	37	12	4919519	4919519	+	Silent	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:4919519C>A	uc001qng.2	+	1	1178	c.312C>A	c.(310-312)GGC>GGA	p.G104G		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	104						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						AGTCTGGGGGCCGCCTGCGGA	0.662000										HNSCC(72;0.22)			27	97					7.11191e-15	9.27971e-15	1	0
ATF7IP	55729	broad.mit.edu	37	12	14591086	14591086	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:14591086A>G	uc001rbw.2	+	5	1972	c.1814A>G	c.(1813-1815)GAA>GGA	p.E605G	ATF7IP_uc010shs.1_Missense_Mutation_p.E604G|ATF7IP_uc001rbu.2_Missense_Mutation_p.E605G|ATF7IP_uc001rbv.1_Missense_Mutation_p.E604G|ATF7IP_uc001rbx.2_Missense_Mutation_p.E604G|ATF7IP_uc010sht.1_Missense_Mutation_p.E605G|ATF7IP_uc001rby.3_Missense_Mutation_p.E605G|ATF7IP_uc001rca.2_Missense_Mutation_p.E605G	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	605	Interaction with SETDB1.				DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						TTGCTGGAAGAAAAATTGTGT	0.338000													12	18					0	0	0	0
GYS2	2998	broad.mit.edu	37	12	21733364	21733364	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:21733364T>A	uc001rfb.2	-	2	470	c.215A>T	c.(214-216)CAT>CTT	p.H72L		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	72					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						CTTCATATTATGCTCAAAATA	0.423000													42	82					0	0	0	0
CASC1	55259	broad.mit.edu	37	12	25297596	25297596	+	Silent	SNP	T	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:25297596T>C	uc001rgl.2	-	8	769	c.687A>G	c.(685-687)AGA>AGG	p.R229R	CASC1_uc001rgk.2_Silent_p.R235R|CASC1_uc001rgm.3_Silent_p.R293R|CASC1_uc001rgj.2_Silent_p.R189R|CASC1_uc010sje.1_Silent_p.R170R|CASC1_uc010sjf.1_Silent_p.R117R|CASC1_uc010sjg.1_Silent_p.R229R	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	229										ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			TTTCAGAGAATCTAACACTTC	0.358000													10	23					0	0	0	0
CNTN1	1272	broad.mit.edu	37	12	41410718	41410718	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:41410718G>A	uc001rmm.1	+	19	2532	c.2419G>A	c.(2419-2421)GCT>ACT	p.A807T	CNTN1_uc001rmn.1_Missense_Mutation_p.A796T	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	807					axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				AGCACAAGACGGTAGGTGAAA	0.428000													12	18					0	0	0	0
ARID2	196528	broad.mit.edu	37	12	46211563	46211563	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:46211563A>G	uc001ros.1	+	5	529	c.529A>G	c.(529-531)ATT>GTT	p.I177V	ARID2_uc001ror.2_Missense_Mutation_p.I177V	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	177					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		GGACTTTGCTATTAACGTATG	0.383000													16	33					0	0	0	0
PDE1B	5153	broad.mit.edu	37	12	54960852	54960852	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:54960852G>T	uc001sgd.1	+	3	374	c.208G>T	c.(208-210)GTC>TTC	p.V70F	PDE1B_uc010soz.1_5'UTR|PDE1B_uc010spa.1_Missense_Mutation_p.V29F|PDE1B_uc001sgf.2_5'UTR|PDE1B_uc001sge.2_Missense_Mutation_p.V50F|PDE1B_uc009znq.2_5'UTR	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	70					activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GCTGGAAGCCGTCTACATAGA	0.274000													6	11					8.12818e-05	8.89362e-05	1	0
LRP1	4035	broad.mit.edu	37	12	57588842	57588842	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:57588842A>G	uc001snd.2	+	51	8732	c.8266A>G	c.(8266-8268)AGC>GGC	p.S2756G		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2756	Extracellular (Potential).|LDL-receptor class A 16.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GTGTGACGGCAGCGATGACTG	0.612000													52	168					0	0	0	0
KCNC2	3747	broad.mit.edu	37	12	75444618	75444618	+	Silent	SNP	C	T	T	rs139012036	byFrequency	TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:75444618C>T	uc001sxg.1	-	3	1711	c.1167G>A	c.(1165-1167)CTG>CTA	p.L389L	KCNC2_uc009zry.2_Silent_p.L389L|KCNC2_uc001sxe.2_Silent_p.L389L|KCNC2_uc001sxf.2_Silent_p.L389L|KCNC2_uc010stw.1_Silent_p.L389L	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	389	Helical; Name=Segment S5; (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						CTCCTAGAGCCAGGAAAATTA	0.438000													11	37					0	0	0	0
ACSS3	79611	broad.mit.edu	37	12	81503351	81503351	+	Silent	SNP	A	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:81503351A>G	uc001szl.1	+	2	415	c.324A>G	c.(322-324)GGA>GGG	p.G108G	ACSS3_uc001szm.1_Silent_p.G107G	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	108						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TTGTGGAAGGAATGCTTAACA	0.308000													12	35					0	0	0	0
STAB2	55576	broad.mit.edu	37	12	104089346	104089346	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:104089346C>G	uc001tjw.2	+	32	3580	c.3394C>G	c.(3394-3396)CGT>GGT	p.R1132G		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1132	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCCACAAAGACGTCTAACTGG	0.478000													22	44					0	0	0	0
SLC24A6	80024	broad.mit.edu	37	12	113754408	113754409	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:113754408_113754409CC>AA	uc001tvc.2	-	10	1125_1126	c.915_916GG>TT	c.(913-918)CTGGTC>CTTTTC	p.V306F	SLC24A6_uc001tuz.2_Missense_Mutation_p.V11F|SLC24A6_uc001tva.2_RNA|SLC24A6_uc001tvb.2_Missense_Mutation_p.V44F	NM_024959	NP_079235	Q6J4K2	NCKX6_HUMAN	solute carrier family 24 member 6 precursor	306	Cytoplasmic (Potential).				response to stimulus|sodium ion transport	integral to membrane|plasma membrane	calcium:cation antiporter activity			central_nervous_system(1)	1						AGGGCCCGGACCAGGATCTGAG	0.589000													63	259					0	0	0	0
NME2P1	283458	broad.mit.edu	37	12	120720129	120720129	+	RNA	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:120720129G>T	uc001tyb.1	+	1		c.190G>T				NR_001577				Homo sapiens non-metastatic cells 2, protein (NM23B) expressed in, pseudogene 1 (NME2P1), non-coding RNA.												0						TGGTGGGCAAGATCATCAAGC	0.622000													11	19					0.00010058	0.000109073	1	0
TMEM132B	114795	broad.mit.edu	37	12	125900196	125900196	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:125900196T>A	uc001uhe.1	+	3	1072	c.1064T>A	c.(1063-1065)ATG>AAG	p.M355K		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	355	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CTCACCTGCATGGGCCATCGC	0.587000													18	45					0	0	0	0
PIWIL1	9271	broad.mit.edu	37	12	130851759	130851759	+	Silent	SNP	A	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr12:130851759A>G	uc001uik.2	+	19	2367	c.2277A>G	c.(2275-2277)CCA>CCG	p.P759P	PIWIL1_uc001uij.1_Silent_p.P759P	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	759	Piwi.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		TTCAGAATCCACTTCCTGGAA	0.408000													29	94					0	0	0	0
ATP8A2	51761	broad.mit.edu	37	13	26125580	26125580	+	Silent	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr13:26125580G>T	uc001uqk.2	+	11	1138	c.996G>T	c.(994-996)TCG>TCT	p.S332S	ATP8A2_uc010tdi.1_Silent_p.S292S|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc001uql.1_Silent_p.S292S	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	292	Helical; (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		TGGTGAGCTCGGCGGGGGCCC	0.512000													14	31					0.000219431	0.000233805	1	0
MAB21L1	4081	broad.mit.edu	37	13	36050122	36050122	+	Missense_Mutation	SNP	A	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr13:36050122A>C	uc001uvc.2	-	1	711	c.154T>G	c.(154-156)TTC>GTC	p.F52V	NBEA_uc001uvb.2_Intron|NBEA_uc010abi.2_Intron|NBEA_uc010tee.1_Intron|NBEA_uc010tef.1_5'Flank|NBEA_uc010teg.1_5'Flank	NM_005584	NP_005575	Q13394	MB211_HUMAN	mab-21-like protein 1	52					anatomical structure morphogenesis	nucleus				ovary(2)	2		Breast(139;0.014)|Lung SC(185;0.051)|Prostate(109;0.202)		all cancers(112;9.63e-08)|Epithelial(112;1.37e-06)|BRCA - Breast invasive adenocarcinoma(63;0.000659)|OV - Ovarian serous cystadenocarcinoma(117;0.00372)|GBM - Glioblastoma multiforme(144;0.115)		GAGCTGATGAACCGCGGCTCC	0.517000													17	71					0	0	0	0
C13orf18	80183	broad.mit.edu	37	13	46942902	46942902	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr13:46942902G>C	uc010acl.2	-	4	1189	c.584C>G	c.(583-585)CCA>CGA	p.P195R	C13orf18_uc001vbf.3_Missense_Mutation_p.P128R|C13orf18_uc001vbg.3_5'UTR|C13orf18_uc010tfz.1_Missense_Mutation_p.P38R|C13orf18_uc010acm.2_Missense_Mutation_p.P60R|C13orf18_uc010acn.2_5'UTR|C13orf18_uc001vbe.3_Missense_Mutation_p.P195R|C13orf18_uc001vbh.3_Missense_Mutation_p.P195R|C13orf18_uc001vbi.3_Missense_Mutation_p.P38R|C13orf18_uc010aco.1_Missense_Mutation_p.P195R|C13orf18_uc010tga.1_Missense_Mutation_p.P128R	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	195											0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		AAATACCTCTGGTGAGAAGGA	0.358000													20	95					0	0	0	0
OLFM4	10562	broad.mit.edu	37	13	53603078	53603078	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr13:53603078C>G	uc001vhl.2	+	1	107	c.107C>G	c.(106-108)TCT>TGT	p.S36C	OLFM4_uc001vhk.1_Missense_Mutation_p.S36C	NM_006418	NP_006409	Q6UX06	OLFM4_HUMAN	olfactomedin 4 precursor	36	Ser-rich.				cell adhesion	extracellular space				skin(1)	1		Breast(56;0.000776)|Lung NSC(96;0.000814)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.13e-08)		GGCTTCAGCTCTTTCCCAGGT	0.428000													42	98					0	0	0	0
FARP1	10160	broad.mit.edu	37	13	99064263	99064263	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr13:99064263G>A	uc001vnj.2	+	16	2137	c.1801G>A	c.(1801-1803)GAA>AAA	p.E601K	FARP1_uc001vnh.2_Missense_Mutation_p.E601K	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	601	DH.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			TTTTCTCAAGGAAATTGAGCA	0.448000													62	100					0	0	0	0
DOCK9	23348	broad.mit.edu	37	13	99483677	99483677	+	Silent	SNP	G	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr13:99483677G>C	uc001vnt.2	-	41	4549	c.4494C>G	c.(4492-4494)TCC>TCG	p.S1498S	DOCK9_uc001vnw.2_Silent_p.S1497S|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Silent_p.S1498S|DOCK9_uc001vnq.2_Silent_p.S70S|DOCK9_uc001vnr.2_Silent_p.S141S|DOCK9_uc010tin.1_Silent_p.S141S|DOCK9_uc001vns.2_Silent_p.S70S|DOCK9_uc010tio.1_Silent_p.S190S|DOCK9_uc010tip.1_Silent_p.S208S|DOCK9_uc001vnu.1_Silent_p.S70S|DOCK9_uc010tiq.1_Silent_p.S476S	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	1498					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					AGAGCAGCTGGGAGGCCTCCG	0.488000													5	7					0	0	0	0
MDGA2	161357	broad.mit.edu	37	14	47426704	47426704	+	Silent	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr14:47426704C>T	uc001wwj.3	-	9	1951	c.1755G>A	c.(1753-1755)ACG>ACA	p.T585T	MDGA2_uc001wwi.3_Silent_p.T356T|MDGA2_uc010ani.2_Silent_p.T145T	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	585	Ig-like 6.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						CAAATTGACCCGTCCGTAATA	0.443000													33	62					0	0	0	0
ADAM21	8747	broad.mit.edu	37	14	70924239	70924239	+	Missense_Mutation	SNP	T	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr14:70924239T>G	uc001xmd.2	+	1	23	c.23T>G	c.(22-24)GTG>GGG	p.V8G		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	8					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		GGGACCCTCGTGTACATCAGA	0.542000													39	171					0	0	0	0
BATF	10538	broad.mit.edu	37	14	75991484	75991484	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr14:75991484C>A	uc001xrr.2	+	2	363	c.121C>A	c.(121-123)CAG>AAG	p.Q41K		NM_006399	NP_006390	Q16520	BATF_HUMAN	basic leucine zipper transcription factor,	41	Basic motif.					nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.028)		TATTGCCGCCCAGAAGAGCCG	0.537000													9	18					2.17888e-05	2.40564e-05	1	0
ANGEL1	23357	broad.mit.edu	37	14	77275617	77275617	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr14:77275617G>A	uc001xsv.2	-	2	547	c.434C>T	c.(433-435)TCC>TTC	p.S145F	ANGEL1_uc010tvf.1_Missense_Mutation_p.S145F	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	145										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		TGCCCACATGGAGCCCTCCAC	0.632000													7	11					0	0	0	0
JAG2	3714	broad.mit.edu	37	14	105618508	105618508	+	Silent	SNP	G	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr14:105618508G>C	uc001yqg.2	-	6	1313	c.909C>G	c.(907-909)CTC>CTG	p.L303L	JAG2_uc001yqf.2_5'Flank|JAG2_uc001yqh.2_Silent_p.L303L	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	303	Extracellular (Potential).|EGF-like 2; atypical.				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		CTTTGTCACAGAGCAGGCCGC	0.637000													56	128					0	0	0	0
SNORD116-5	100033417	broad.mit.edu	37	15	25304848	25304848	+	5'Flank	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr15:25304848C>A	uc001yxo.2	+						SNORD116-4_uc001yxh.1_RNA|SNORD116-4_uc001yxj.1_RNA|SNORD116-4_uc001yxm.1_RNA|IPW_uc001yxn.3_RNA	NR_003322				Homo sapiens small nucleolar RNA, C/D box 116-5 (SNORD116-5), non-coding RNA.												0						TAGGTTCCACCACCCAGGGCA	0.547000													7	27					0.00198382	0.00205979	1	0
OTUD7A	161725	broad.mit.edu	37	15	31794041	31794041	+	Silent	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr15:31794041C>G	uc001zfq.2	-	8	1095	c.1002G>C	c.(1000-1002)GCG>GCC	p.A334A	OTUD7A_uc001zfr.2_Silent_p.A341A	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	334	OTU.|Catalytic (By similarity).|TRAF-binding (By similarity).					cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		TGGGTGCGAACGCTGTGGACA	0.632000													27	68					0	0	0	0
USP3	9960	broad.mit.edu	37	15	63855163	63855163	+	Silent	SNP	A	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr15:63855163A>G	uc002amf.2	+	8	846	c.717A>G	c.(715-717)CCA>CCG	p.P239P	USP3_uc010uii.1_RNA|USP3_uc002amg.2_Silent_p.P154P|USP3_uc002amh.2_Silent_p.P217P|USP3_uc010uij.1_Silent_p.P195P|USP3_uc010uik.1_5'UTR|USP3_uc010bgs.2_Silent_p.P222P|USP3_uc002ami.2_Silent_p.P70P	NM_006537	NP_006528	Q9Y6I4	UBP3_HUMAN	ubiquitin thiolesterase 3	239					DNA repair|histone deubiquitination|mitotic cell cycle|regulation of protein stability|ubiquitin-dependent protein catabolic process	nuclear chromatin	histone binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(80;0.0187)		CATTTAGCCCAGAGTCCTTAT	0.363000													47	96					0	0	0	0
IGDCC3	9543	broad.mit.edu	37	15	65625630	65625630	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr15:65625630A>T	uc002aos.2	-	6	1199	c.947T>A	c.(946-948)GTG>GAG	p.V316E		NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	316	Extracellular (Potential).|Ig-like C2-type 3.									ovary(3)	3						CGTTCTCCTCACCCGGGTGCC	0.632000													18	84					0	0	0	0
OTOA	146183	broad.mit.edu	37	16	21747666	21747666	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr16:21747666G>T	uc002djh.2	+	21	2387	c.2386G>T	c.(2386-2388)GTT>TTT	p.V796F	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.V717F|OTOA_uc002dji.2_Missense_Mutation_p.V472F|OTOA_uc010vbk.1_Missense_Mutation_p.V444F	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	810					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		CTTTCAGTCTGTTCGGAACAG	0.473000													57	60					2.18419e-29	3.11663e-29	1	0
FBRS	64319	broad.mit.edu	37	16	30680766	30680766	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr16:30680766C>A	uc002dzd.3	+	12	1446	c.1183C>A	c.(1183-1185)CTC>ATC	p.L395I	FBRS_uc002dzc.3_Missense_Mutation_p.L307I	NM_001105079	NP_001098549	Q9HAH7	FBRS_HUMAN	fibrosin	395	Pro-rich.									ovary(1)	1			Colorectal(24;0.103)			CGCTGCCCGCCTCTACGGTCT	0.682000													32	148					3.90053e-15	5.14448e-15	1	0
NFATC3	4775	broad.mit.edu	37	16	68217251	68217251	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr16:68217251C>T	uc002evo.1	+	8	2290	c.2080C>T	c.(2080-2082)CGT>TGT	p.R694C	NFATC3_uc010vkl.1_Missense_Mutation_p.R215C|NFATC3_uc010vkm.1_Missense_Mutation_p.R215C|NFATC3_uc010vkn.1_Missense_Mutation_p.R215C|NFATC3_uc010vko.1_Missense_Mutation_p.R215C|NFATC3_uc010vkp.1_Missense_Mutation_p.R215C|NFATC3_uc010vkq.1_Missense_Mutation_p.R215C|NFATC3_uc002evl.2_Missense_Mutation_p.R215C|NFATC3_uc002evk.2_Missense_Mutation_p.R694C|NFATC3_uc002evm.1_Missense_Mutation_p.R694C|NFATC3_uc002evn.1_Missense_Mutation_p.R694C|NFATC3_uc010vkr.1_Missense_Mutation_p.R215C|NFATC3_uc010vks.1_Missense_Mutation_p.R215C|NFATC3_uc010vkt.1_Missense_Mutation_p.R215C|NFATC3_uc010vku.1_Missense_Mutation_p.R215C|NFATC3_uc010vkv.1_Missense_Mutation_p.R215C|NFATC3_uc010vkw.1_Missense_Mutation_p.R215C|NFATC3_uc010vkx.1_Missense_Mutation_p.R215C|NFATC3_uc010vky.1_Missense_Mutation_p.R215C|NFATC3_uc010vkz.1_Missense_Mutation_p.R215C|NFATC3_uc010vla.1_Missense_Mutation_p.R215C|NFATC3_uc010vlb.1_Missense_Mutation_p.R215C|NFATC3_uc010vlc.1_Missense_Mutation_p.R215C	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	694					inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		CCAGTCTCAACGTTTTACTTA	0.383000													23	30					0	0	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77397723	77397723	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr16:77397723G>T	uc002ffc.3	-	6	1451	c.1032C>A	c.(1030-1032)AGC>AGA	p.S344R	ADAMTS18_uc010chc.1_5'UTR|ADAMTS18_uc002ffe.1_Missense_Mutation_p.S40R|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	344	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GAAGAATTAGGCTCACCACAA	0.308000													36	27					4.16155e-14	5.40115e-14	1	0
LIG3	3980	broad.mit.edu	37	17	33329057	33329057	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr17:33329057C>A	uc002hik.1	+	18	2716	c.2608C>A	c.(2608-2610)CCC>ACC	p.P870T	LIG3_uc002hij.2_Missense_Mutation_p.P870T	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	870					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	CCGCAAGGCCCCCAGCAAGCC	0.557000								Other_BER_factors					13	38					1.37522e-17	1.87461e-17	1	0
GAS2L2	246176	broad.mit.edu	37	17	34072965	34072965	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr17:34072965C>A	uc002hjv.1	-	6	1579	c.1551G>T	c.(1549-1551)AGG>AGT	p.R517S		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	517					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CAGGAAAGCTCCTTCCTGGTG	0.612000													22	35					1.96895e-08	2.29868e-08	1	0
CCL16	6360	broad.mit.edu	37	17	34304698	34304698	+	Silent	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr17:34304698C>T	uc002hkl.2	-	3	334	c.267G>A	c.(265-267)AAG>AAA	p.K89K	CCL16_uc002hkm.2_RNA	NM_004590	NP_004581	O15467	CCL16_HUMAN	small inducible cytokine A16 precursor	89					cell-cell signaling|immune response|inflammatory response	extracellular space	chemoattractant activity|chemokine activity				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGTTGGGATCCTTGATGTACT	0.507000													38	63					0	0	0	0
NEUROD2	4761	broad.mit.edu	37	17	37761975	37761975	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr17:37761975G>C	uc002hry.2	-	2	1078	c.878C>G	c.(877-879)TCC>TGC	p.S293C		NM_006160	NP_006151	Q15784	NDF2_HUMAN	neurogenic differentiation 2	293					cellular response to calcium ion|cellular response to electrical stimulus|cerebellar cortex development|negative regulation of synapse maturation|positive regulation of calcium-mediated signaling|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of synapse maturation|positive regulation of synaptic plasticity|protein ubiquitination|regulation of transcription from RNA polymerase II promoter	nucleus	E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Lung(15;0.00549)|LUAD - Lung adenocarcinoma(14;0.0664)			CTCGTACTCGGAGCTGTTGTA	0.627000													4	11					0	0	0	0
EPB41L3	23136	broad.mit.edu	37	18	5416372	5416372	+	Silent	SNP	A	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr18:5416372A>T	uc002kmt.1	-	13	1598	c.1512T>A	c.(1510-1512)CCT>CCA	p.P504P	EPB41L3_uc010wzh.1_Intron|EPB41L3_uc002kmu.1_Intron|EPB41L3_uc010dkq.1_Intron|EPB41L3_uc002kms.1_Intron|EPB41L3_uc010wze.1_Intron|EPB41L3_uc010wzf.1_Intron|EPB41L3_uc010wzg.1_Intron|EPB41L3_uc010dkr.2_Intron	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	504	Hydrophilic.				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						TGCCAAGCCCAGGTGACTGAT	0.423000													14	27					0	0	0	0
SLC39A6	25800	broad.mit.edu	37	18	33706695	33706695	+	Silent	SNP	T	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr18:33706695T>A	uc010dmy.2	-	2	566	c.276A>T	c.(274-276)ATA>ATT	p.I92I	SLC39A6_uc002kzj.2_Intron	NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	92	His-rich.|Extracellular (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						ggtcatggtgTATATGGATTC	0.149000													26	16					0	0	0	0
SLC14A2	8170	broad.mit.edu	37	18	43247011	43247011	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr18:43247011C>A	uc010dnj.2	+	14	1990	c.1669C>A	c.(1669-1671)CTC>ATC	p.L557I	SLC14A2_uc002lbe.2_Missense_Mutation_p.L557I	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	557						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CAGCAAAGCCCTCAGCTACAT	0.473000													7	27					1.26484e-09	1.49817e-09	1	0
MAPK4	5596	broad.mit.edu	37	18	48190512	48190512	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr18:48190512G>A	uc002lev.2	+	2	1184	c.184G>A	c.(184-186)GCG>ACG	p.A62T	MAPK4_uc010xdm.1_Intron|MAPK4_uc010doz.2_Missense_Mutation_p.A62T	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	62	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		CATGAAGCACGCGCTCCGAGA	0.612000													19	48					0	0	0	0
DCC	1630	broad.mit.edu	37	18	50918220	50918220	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr18:50918220G>A	uc002lfe.1	+	17	3238	c.2651G>A	c.(2650-2652)CGG>CAG	p.R884Q	DCC_uc010xdr.1_Missense_Mutation_p.R712Q|DCC_uc010dpf.1_Missense_Mutation_p.R519Q	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	884	Extracellular (Potential).|Fibronectin type-III 5.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TACACCGTCCGGTGGAGAACC	0.438000													12	36					0	0	0	0
NFATC1	4772	broad.mit.edu	37	18	77246788	77246788	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr18:77246788T>A	uc010xfg.1	+	9	3086	c.2633T>A	c.(2632-2634)CTG>CAG	p.L878Q	NFATC1_uc002lnd.2_Intron|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Intron|NFATC1_uc010xfj.1_Missense_Mutation_p.L406Q|NFATC1_uc002lnf.2_Missense_Mutation_p.L865Q|NFATC1_uc002lng.2_Intron|NFATC1_uc010xfk.1_Intron	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	878	Trans-activation domain B (TAD-B).				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		CCGCAGCACCTGCCGTCCACG	0.701000													15	40					0	0	0	0
KEAP1	9817	broad.mit.edu	37	19	10602473	10602473	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:10602473C>T	uc002moq.1	-	3	1261	c.1105G>A	c.(1105-1107)GTG>ATG	p.V369M	KEAP1_uc002mop.1_Missense_Mutation_p.V87M|KEAP1_uc002mor.1_Missense_Mutation_p.V369M	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	369	Kelch 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			CCGCCCACCACGCAGCCGGCC	0.677000													4	2					0	0	0	0
DOCK6	57572	broad.mit.edu	37	19	11327707	11327707	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:11327707C>T	uc002mqs.3	-	30	3818	c.3777G>A	c.(3775-3777)TGG>TGA	p.W1259*	DOCK6_uc010xlq.1_Nonsense_Mutation_p.W598*	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1259					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						TTTTCAGCACCCACAGCACAC	0.597000													19	20					0	0	0	0
CHERP	10523	broad.mit.edu	37	19	16630505	16630505	+	Silent	SNP	A	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:16630505A>T	uc002nei.1	-	16	2558	c.2484T>A	c.(2482-2484)TCT>TCA	p.S828S	MED26_uc002nee.2_Intron|C19orf44_uc002neh.1_Intron|C19orf44_uc010eai.1_Intron|CHERP_uc010xpg.1_Silent_p.S367S	NM_006387	NP_006378	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum	828					cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			ovary(2)	2						GCGCCGAATTAGAACCCAGAC	0.502000													54	121					0	0	0	0
KCNN1	3780	broad.mit.edu	37	19	18084926	18084926	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:18084926G>T	uc002nht.2	+	3	539	c.229G>T	c.(229-231)GCC>TCC	p.A77S	KCNN1_uc010xqa.1_Missense_Mutation_p.A77S	NM_002248	NP_002239	Q92952	KCNN1_HUMAN	potassium intermediate/small conductance	77					synaptic transmission	voltage-gated potassium channel complex	calmodulin binding|small conductance calcium-activated potassium channel activity				0						GGAAGATGAGGCCGGCAGGCA	0.687000													16	28					2.37509e-13	3.06626e-13	1	0
ZNF429	353088	broad.mit.edu	37	19	21713485	21713485	+	Silent	SNP	A	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:21713485A>T	uc002nqd.1	+	3	362	c.225A>T	c.(223-225)CCA>CCT	p.P75P	ZNF429_uc010ecu.1_Silent_p.P75P	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	75	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ATGAACCCCCAGGTAGGTGAG	0.433000													13	26					0	0	0	0
TSHZ3	57616	broad.mit.edu	37	19	31769772	31769772	+	Silent	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:31769772G>T	uc002nsy.3	-	2	992	c.927C>A	c.(925-927)GTC>GTA	p.V309V		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	309					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					CGACAGGAGTGACGGGTTCCT	0.532000													20	33					1.33834e-09	1.57756e-09	1	0
SPTBN4	57731	broad.mit.edu	37	19	41077931	41077931	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:41077931G>C	uc002ony.2	+	34	7412	c.7326G>C	c.(7324-7326)TGG>TGC	p.W2442C	SPTBN4_uc002onz.2_Missense_Mutation_p.W2442C|SPTBN4_uc010egx.2_Missense_Mutation_p.W1185C	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	2442	PH.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CCAGGTCGTGGGTGAGCCTGT	0.562000													93	377					0	0	0	0
ZNF285	26974	broad.mit.edu	37	19	44891894	44891895	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:44891894_44891895CA>AT	uc002ozd.3	-	4	599_600	c.512_513TG>AT	c.(511-513)ATG>AAT	p.M171N	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.M178N	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	171					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						ATTTCTCTTCCATGTAAATTCC	0.475000													28	53					0	0	0	0
EXOC3L2	90332	broad.mit.edu	37	19	45735052	45735052	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:45735052C>G	uc002pay.1	-	2	100	c.59G>C	c.(58-60)GGT>GCT	p.G20A		NM_138568	NP_612635	Q2M3D2	EX3L2_HUMAN	exocyst complex component 3-like 2	20										ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00883)		ATCCTCCAAACCCCGCAGGGT	0.607000													30	38					0	0	0	0
CD33	945	broad.mit.edu	37	19	51729135	51729135	+	Silent	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:51729135G>T	uc002pwa.2	+	3	535	c.495G>T	c.(493-495)GTG>GTT	p.V165V	CD33_uc010eos.1_Silent_p.V165V|CD33_uc010eot.1_Silent_p.V38V|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	165	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	CCTGCTCTGTGTCCTGGGCCT	0.592000													32	108					2.87052e-16	3.86965e-16	1	0
FPR1	2357	broad.mit.edu	37	19	52249772	52249772	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:52249772G>A	uc002pxq.2	-	2	571	c.476C>T	c.(475-477)CCA>CTA	p.P159L		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	159	Helical; Name=4; (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	AATGATAACTGGCAATGTGAG	0.532000													16	44					0	0	0	0
ZNF578	147660	broad.mit.edu	37	19	53014964	53014964	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:53014964C>A	uc002pzp.3	+	6	1574	c.1330C>A	c.(1330-1332)CGT>AGT	p.R444S		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	219	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		AAGCCTTGCACGTCATCATAG	0.378000													8	32					0.000157383	0.000168428	1	0
ZNF761	388561	broad.mit.edu	37	19	53959845	53959845	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:53959845G>T	uc010eqp.2	+	7	2542	c.2084G>T	c.(2083-2085)TGT>TTT	p.C695F	ZNF761_uc010ydy.1_Missense_Mutation_p.C641F|ZNF761_uc002qbt.1_Missense_Mutation_p.C641F	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	695	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		TGTAATGAGTGTGGCAAGAAC	0.388000													24	53					6.36457e-07	7.15648e-07	1	0
ZNF761	388561	broad.mit.edu	37	19	53959847	53959847	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:53959847G>T	uc010eqp.2	+	7	2544	c.2086G>T	c.(2086-2088)GGC>TGC	p.G696C	ZNF761_uc010ydy.1_Missense_Mutation_p.G642C|ZNF761_uc002qbt.1_Missense_Mutation_p.G642C	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	696	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		TAATGAGTGTGGCAAGAACTT	0.393000													24	54					4.72057e-08	5.43311e-08	1	0
MYT1L	23040	broad.mit.edu	37	2	1920986	1920986	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:1920986G>T	uc002qxe.2	-	11	2436	c.1609C>A	c.(1609-1611)CCT>ACT	p.P537T	MYT1L_uc002qxd.2_Missense_Mutation_p.P535T|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	537					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CTTTCTGGAGGGACCCTATCT	0.567000													115	188					5.94928e-83	8.96064e-83	1	0
MYCN	4613	broad.mit.edu	37	2	16086155	16086155	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:16086155A>T	uc002rci.2	+	3	1631	c.1331A>T	c.(1330-1332)AAG>ATG	p.K444M	MYCN_uc010yjr.1_Missense_Mutation_p.K436M	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	444	Leucine-zipper.				regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			TTGCTGGAAAAGGAAAAATTG	0.488000			A		neuroblastoma								43	156					0	0	0	0
CLIP4	79745	broad.mit.edu	37	2	29404682	29404682	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:29404682C>A	uc002rmv.2	+	16	2280	c.2041C>A	c.(2041-2043)CAT>AAT	p.H681N	CLIP4_uc002rmw.2_RNA	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	681	CAP-Gly 3.									ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TAAGCCGAACCATGGAGTCTT	0.448000													59	109					5.16434e-52	7.68352e-52	1	0
DYSF	8291	broad.mit.edu	37	2	71747932	71747932	+	Silent	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:71747932C>A	uc002sie.2	+	11	1327	c.951C>A	c.(949-951)CTC>CTA	p.L317L	DYSF_uc010feg.2_Silent_p.L348L|DYSF_uc010feh.2_Silent_p.L317L|DYSF_uc002sig.3_Silent_p.L317L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.L317L|DYSF_uc010fef.2_Silent_p.L348L|DYSF_uc010fei.2_Silent_p.L348L|DYSF_uc010fek.2_Silent_p.L349L|DYSF_uc010fej.2_Silent_p.L318L|DYSF_uc010fel.2_Silent_p.L318L|DYSF_uc010feo.2_Silent_p.L349L|DYSF_uc010fem.2_Silent_p.L318L|DYSF_uc010fen.2_Silent_p.L349L|DYSF_uc002sif.2_Silent_p.L318L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	317	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ACGCCTATCTCAGGAAGTGGC	0.587000													45	78					6.30371e-39	9.21021e-39	1	0
REG1P	5969	broad.mit.edu	37	2	79365119	79365119	+	RNA	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:79365119C>G	uc002soa.1	-	2		c.115G>C			REG1P_uc002sob.1_RNA|REG1P_uc002soc.1_RNA					Homo sapiens mRNA for Reg-related sequence derived peptide-1, complete cds.												0						GAACATCAGGCAGGAGATCAG	0.493000													18	24					0	0	0	0
Unknown	0	broad.mit.edu	37	2	89309625	89309625	+	RNA	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:89309625G>T	uc010ytr.1	-	74		c.6722C>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GCATAGATCAGGAGCTTAGGG	0.522000													80	97					1.18048e-66	1.76709e-66	1	0
SULT1C2	6819	broad.mit.edu	37	2	108924878	108924878	+	Silent	SNP	A	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:108924878A>G	uc002tdy.2	+	8	1302	c.849A>G	c.(847-849)AGA>AGG	p.R283R	SULT1C2_uc002tdx.2_Silent_p.R294R|SULT1C2_uc010ywq.1_Silent_p.R297R	NM_001056	NP_001047	O00338	ST1C2_HUMAN	sulfotransferase family, cytosolic, 1C, member 1	283					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine metabolic process|sulfation|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	sulfotransferase activity			ovary(1)	1						TCTATAGAAGAAAGATGGAAG	0.408000													24	43					0	0	0	0
POLR1B	84172	broad.mit.edu	37	2	113330186	113330186	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:113330186G>A	uc002thw.2	+	13	2702	c.2122G>A	c.(2122-2124)GAT>AAT	p.D708N	POLR1B_uc010fkn.2_Missense_Mutation_p.D652N|POLR1B_uc002thx.2_Missense_Mutation_p.D569N|POLR1B_uc010fko.2_Missense_Mutation_p.D525N|POLR1B_uc010fkp.2_Missense_Mutation_p.D147N|POLR1B_uc010yxn.1_Missense_Mutation_p.D746N|POLR1B_uc002thy.2_Missense_Mutation_p.D569N|POLR1B_uc010yxo.1_Missense_Mutation_p.D485N	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	708					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						AGACCGATCGGATAACAAACT	0.403000													25	51					0	0	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125192127	125192127	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:125192127G>A	uc002tno.2	+	5	960	c.596G>A	c.(595-597)AGT>AAT	p.S199N	CNTNAP5_uc010flu.2_Missense_Mutation_p.S199N	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	199	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		AAGTTGATGAGTACTCTCAAA	0.463000													14	58					0	0	0	0
XIRP2	129446	broad.mit.edu	37	2	168104414	168104414	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:168104414C>A	uc002udx.2	+	8	6530	c.6512C>A	c.(6511-6513)CCA>CAA	p.P2171Q	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.P1996Q|XIRP2_uc010fpq.2_Missense_Mutation_p.P1949Q|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1996					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTCAGCATGCCAGTTGGAGGA	0.353000													9	37					0.000442599	0.00046954	1	0
ITGA4	3676	broad.mit.edu	37	2	182343549	182343549	+	Missense_Mutation	SNP	A	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:182343549A>C	uc002unu.2	+	5	1385	c.622A>C	c.(622-624)AAG>CAG	p.K208Q	ITGA4_uc010zfl.1_Missense_Mutation_p.K208Q	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	208	FG-GAP 3.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TTTTTACACAAAGGTAATTGT	0.254000													4	12					0	0	0	0
COL3A1	1281	broad.mit.edu	37	2	189873733	189873733	+	Silent	SNP	T	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:189873733T>G	uc002uqj.1	+	48	3726	c.3609T>G	c.(3607-3609)GCT>GCG	p.A1203A		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1203	Nonhelical region (C-terminal).			A -> P (in Ref. 8; CAA33387).	axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding	p.A1203T(1)		central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TTGGAGCCGCTGCCATTGCTG	0.537000													15	65					0	0	0	0
VIL1	7429	broad.mit.edu	37	2	219299411	219299411	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:219299411T>A	uc002via.2	+	14	1728	c.1663T>A	c.(1663-1665)TAT>AAT	p.Y555N	VIL1_uc010zke.1_Missense_Mutation_p.Y244N|VIL1_uc002vib.2_Missense_Mutation_p.Y555N	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	555	Gelsolin-like 5.|Core.			Y->F: Complete loss of phosphorylation and interaction with PLCG1, does not reduce lamellipodium or ruffle localization, inhibits cell migration; when associated with F-46; F-60; F-81; F- 256; F-286; F-324; F-461; F-604 and F- 725. Inhibits interaction with PLCG1 and lamellipodia localization; when associated with F-286; F-324; F-461; F- 604 and F-725.	actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GTCTTGCTGCTATCTATGGTG	0.577000													31	37					0	0	0	0
PDCD1	5133	broad.mit.edu	37	2	242794394	242794394	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:242794394A>T	uc002wcq.3	-	3	616	c.548T>A	c.(547-549)CTG>CAG	p.L183Q	PDCD1_uc010fzs.2_Intron|PDCD1_uc010fzt.2_RNA	NM_005018	NP_005009	Q15116	PDCD1_HUMAN	programmed cell death 1 precursor	183	Helical; (Potential).				apoptosis|humoral immune response|multicellular organismal development|T cell costimulation	integral to membrane	protein tyrosine phosphatase activity|signal transducer activity			ovary(1)	1		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0219)		CCAGACTAGCAGCACCAGGCT	0.682000													7	12					0	0	0	0
NINL	22981	broad.mit.edu	37	20	25439125	25439125	+	Missense_Mutation	SNP	T	C	C	rs116267316	byFrequency	TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr20:25439125T>C	uc002wux.1	-	22	3811	c.3737A>G	c.(3736-3738)CAG>CGG	p.Q1246R	NINL_uc010gdn.1_Missense_Mutation_p.Q897R|NINL_uc002wuw.1_Missense_Mutation_p.Q37R	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	1246	Potential.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						CTGCAAGTGCTGGGCCTGGGC	0.687000													5	10					0	0	0	0
NINL	22981	broad.mit.edu	37	20	25477376	25477376	+	Silent	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr20:25477376C>T	uc002wux.1	-	10	1307	c.1233G>A	c.(1231-1233)GAG>GAA	p.E411E	NINL_uc010gdn.1_Silent_p.E411E|NINL_uc010gdo.1_Silent_p.E194E|NINL_uc010ztf.1_Silent_p.E427E	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	411	Potential.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						GGTTCCTCTTCTCGGCCCTCT	0.602000													11	52					0	0	0	0
DEFB118	117285	broad.mit.edu	37	20	29960861	29960861	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr20:29960861T>A	uc002wvr.2	+	2	286	c.260T>A	c.(259-261)GTA>GAA	p.V87E		NM_054112	NP_473453	Q96PH6	DB118_HUMAN	beta-defensin 118 precursor	87					cell-matrix adhesion|defense response to bacterium|innate immune response|spermatogenesis	extracellular region				ovary(3)|pancreas(1)	4	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			ATTTTAACAGTAAGGTTCACG	0.458000													51	54					0	0	0	0
PHACTR3	116154	broad.mit.edu	37	20	58318232	58318232	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr20:58318232G>T	uc002yau.2	+	2	656	c.189G>T	c.(187-189)AGG>AGT	p.R63S	PHACTR3_uc002yat.2_Missense_Mutation_p.R60S|PHACTR3_uc010zzw.1_Missense_Mutation_p.R22S|PHACTR3_uc002yav.2_Missense_Mutation_p.R22S|PHACTR3_uc002yaw.2_Missense_Mutation_p.R22S|PHACTR3_uc002yax.2_Missense_Mutation_p.R22S	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	63						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			CCCCTGTGAGGAGGAACAGCA	0.527000													12	55					0.00136819	0.00142666	1	0
SAMSN1	64092	broad.mit.edu	37	21	15872961	15872961	+	Silent	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr21:15872961C>G	uc002yju.1	-	6	739	c.657G>C	c.(655-657)GTG>GTC	p.V219V	SAMSN1_uc010gky.1_Silent_p.V51V|SAMSN1_uc002yjv.1_Silent_p.V287V	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	219	SH3.				negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		AGATGACATCCACATAAATGA	0.408000													19	77					0	0	0	0
IFNGR2	3460	broad.mit.edu	37	21	34787228	34787228	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr21:34787228C>A	uc002yrp.3	+	2	755	c.107C>A	c.(106-108)CCG>CAG	p.P36Q	IFNGR2_uc002yrq.3_Missense_Mutation_p.P55Q|IFNGR2_uc010gma.2_5'UTR|IFNGR2_uc002yrr.3_5'UTR	NM_005534	NP_005525	P38484	INGR2_HUMAN	interferon gamma receptor 2 precursor	36	Extracellular (Potential).|Fibronectin type-III 1.				regulation of interferon-gamma-mediated signaling pathway|response to virus	endoplasmic reticulum|integral to plasma membrane	interferon-gamma receptor activity				0					Interferon gamma-1b(DB00033)	CCTCAGCACCCGAAGATTCGC	0.393000													16	18					6.72482e-11	8.24551e-11	1	0
KCNJ6	3763	broad.mit.edu	37	21	39087393	39087393	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr21:39087393T>C	uc011aej.1	-	3	120	c.67A>G	c.(67-69)AGC>GGC	p.S23G	KCNJ6_uc002ywo.2_Missense_Mutation_p.S23G	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	23	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	GCCACTGGGCTTTCGACGTCC	0.517000													5	18					0	0	0	0
TBC1D10A	83874	broad.mit.edu	37	22	30690945	30690945	+	Missense_Mutation	SNP	C	A	A	rs143051895		TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr22:30690945C>A	uc011akt.1	-	5	648	c.624G>T	c.(622-624)ATG>ATT	p.M208I	GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_RNA|GATSL3_uc003ahh.2_RNA|GATSL3_uc010gvq.2_RNA|GATSL3_uc003ahi.2_Missense_Mutation_p.M66I|TBC1D10A_uc003ahj.3_Missense_Mutation_p.M120I|TBC1D10A_uc010gvu.2_Missense_Mutation_p.M215I|TBC1D10A_uc003ahk.3_Missense_Mutation_p.M208I	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	208	Rab-GAP TBC.					intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						CAGGCATATGCATGAGCAAGA	0.662000													42	125					1.67211e-32	2.42854e-32	1	0
CSF2RB	1439	broad.mit.edu	37	22	37333864	37333864	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr22:37333864G>A	uc003aqa.3	+	14	2231	c.2014G>A	c.(2014-2016)GGA>AGA	p.G672R	CSF2RB_uc003aqc.3_Missense_Mutation_p.G678R	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	672	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	GGAGTCCGGGGGAGGCCCTGC	0.672000													6	6					0	0	0	0
MAPK8IP2	23542	broad.mit.edu	37	22	51041670	51041670	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr22:51041670C>G	uc003bmx.2	+	3	307	c.190C>G	c.(190-192)CGC>GGC	p.R64G	MAPK8IP2_uc003bmy.2_Missense_Mutation_p.R37G|MAPK8IP2_uc011asc.1_5'Flank	NM_012324	NP_036456	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting	64					behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding			large_intestine(2)|central_nervous_system(1)	3		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CTCCCTGGGGCGCTCGGAGCA	0.532000													18	13					0	0	0	0
UBE2E1	7324	broad.mit.edu	37	3	23932088	23932088	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:23932088C>A	uc003cch.2	+	6	747	c.573C>A	c.(571-573)TAC>TAA	p.Y191*	UBE2E1_uc003cci.2_Nonsense_Mutation_p.Y174*	NM_003341	NP_003332	P51965	UB2E1_HUMAN	ubiquitin-conjugating enzyme E2E 1 isoform 1	191					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|histone H2B ubiquitination|histone monoubiquitination|ISG15-protein conjugation|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K48-linked ubiquitination	cytosol|nucleoplasm|ubiquitin ligase complex	ATP binding|ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity				0						CCAAGAGATACGCTACATAAA	0.458000													13	26					0.00010058	0.000109073	1	0
PLXNB1	5364	broad.mit.edu	37	3	48453895	48453895	+	Silent	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:48453895C>T	uc003csw.2	-	26	5259	c.4989G>A	c.(4987-4989)CTG>CTA	p.L1663L	PLXNB1_uc003cst.2_Silent_p.L113L|PLXNB1_uc003csu.2_Silent_p.L1480L|PLXNB1_uc003csx.2_Silent_p.L1663L	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1663	Cytoplasmic (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		ACTGGGCAACCAGGTCACTGA	0.622000													22	35					0	0	0	0
PDZRN3	23024	broad.mit.edu	37	3	73433743	73433743	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:73433743G>T	uc003dpl.1	-	10	2070	c.1974C>A	c.(1972-1974)AGC>AGA	p.S658R	PDZRN3_uc011bgh.1_Missense_Mutation_p.S315R|PDZRN3_uc010hoe.1_Missense_Mutation_p.S356R|PDZRN3_uc011bgf.1_Missense_Mutation_p.S375R|PDZRN3_uc011bgg.1_Missense_Mutation_p.S378R	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	658							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		AAGGGGTGGCGCTCTTCACCT	0.652000													21	45					1.10513e-12	1.40444e-12	1	0
FAM86D	692099	broad.mit.edu	37	3	75476692	75476692	+	Missense_Mutation	SNP	C	A	A	rs140826362	by1000genomes	TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:75476692C>A	uc003dpp.3	-	6	732	c.373G>T	c.(373-375)GCA>TCA	p.A125S	FAM86D_uc003dpo.3_Intron|FAM86D_uc003dps.3_Intron|FAM86D_uc003dpq.3_Missense_Mutation_p.A33S|FAM86D_uc003dpr.3_Intron	NR_024241				RecName: Full=Protein FAM86B1;												0						GTGATGTCTGCCTCTAATGAG	0.587000													18	49					7.33532e-06	8.17268e-06	1	0
UMPS	7372	broad.mit.edu	37	3	124456711	124456711	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:124456711G>T	uc003ehl.3	+	3	713	c.607G>T	c.(607-609)GAG>TAG	p.E203*	UMPS_uc003ehm.3_RNA|UMPS_uc011bka.1_Intron|UMPS_uc011bkb.1_Nonsense_Mutation_p.E111*|UMPS_uc011bkc.1_Nonsense_Mutation_p.E25*|UMPS_uc003ehn.3_Nonsense_Mutation_p.E25*|UMPS_uc011bkd.1_Nonsense_Mutation_p.E25*	NM_000373	NP_000364	P11172	UMPS_HUMAN	uridine monophosphate synthase	203	OPRTase.				'de novo' pyrimidine base biosynthetic process|'de novo' UMP biosynthetic process|pyrimidine nucleoside biosynthetic process	cytosol|nucleus	orotate phosphoribosyltransferase activity|orotidine-5'-phosphate decarboxylase activity			kidney(1)	1				GBM - Glioblastoma multiforme(114;0.146)		GTTTATTCAGGAGAATGTCTT	0.473000													8	23					4.68919e-08	5.42257e-08	1	0
BFSP2	8419	broad.mit.edu	37	3	133167440	133167440	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:133167440T>C	uc003epn.1	+	3	818	c.680T>C	c.(679-681)ATA>ACA	p.I227T	uc003epo.2_Intron	NM_003571	NP_003562	Q13515	BFSP2_HUMAN	phakinin	227	Rod.|Potential.				response to stimulus|visual perception	cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens				0						GAGAGTCAAATAGAAAGTCTG	0.438000													20	14					0	0	0	0
CEP70	80321	broad.mit.edu	37	3	138216951	138216951	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:138216951T>C	uc003esl.2	-	17	1852	c.1654A>G	c.(1654-1656)ATT>GTT	p.I552V	CEP70_uc011bmk.1_Missense_Mutation_p.I532V|CEP70_uc011bml.1_Missense_Mutation_p.I534V|CEP70_uc011bmm.1_Missense_Mutation_p.I400V	NM_024491	NP_077817	Q8NHQ1	CEP70_HUMAN	centrosomal protein 70 kDa	552					G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding			skin(1)	1						TTGTAGATAATGCTGTTTAAA	0.328000													32	22					0	0	0	0
PIK3CB	5291	broad.mit.edu	37	3	138402532	138402532	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:138402532T>C	uc011bmq.1	-	16	2413	c.2413A>G	c.(2413-2415)AAA>GAA	p.K805E	PIK3CB_uc011bmn.1_Missense_Mutation_p.K317E|PIK3CB_uc011bmo.1_Missense_Mutation_p.K251E|PIK3CB_uc011bmp.1_Missense_Mutation_p.K392E	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	805	PI3K/PI4K.			K->R: Loss of lipid kinase activity. May not affect insulin signaling and cell proliferation. Partially affects oncogene-induced trasformation.	activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TCACCATTTTTAAAAATCACT	0.328000													32	109					0	0	0	0
CLSTN2	64084	broad.mit.edu	37	3	140285008	140285008	+	Silent	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:140285008G>A	uc003etn.2	+	17	2971	c.2781G>A	c.(2779-2781)GAG>GAA	p.E927E		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	927	Glu-rich (highly acidic).|Cytoplasmic (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						AGGAGGAGGAGGAGGAAGGGA	0.602000										HNSCC(16;0.037)			4	16					0	0	0	0
GYG1	2992	broad.mit.edu	37	3	148714198	148714198	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:148714198A>G	uc003ewn.2	+	3	306	c.253A>G	c.(253-255)ACA>GCA	p.T85A	GYG1_uc011bnp.1_Missense_Mutation_p.T85A|GYG1_uc003ewo.2_Missense_Mutation_p.T85A|GYG1_uc003ewp.2_Missense_Mutation_p.T85A	NM_004130	NP_004121	P46976	GLYG_HUMAN	glycogenin 1	85					glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	glycogenin glucosyltransferase activity|metal ion binding|protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			TGTCACGCTGACAAAGCTCCA	0.448000													37	126					0	0	0	0
SI	6476	broad.mit.edu	37	3	164764695	164764695	+	Silent	SNP	A	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:164764695A>T	uc003fei.2	-	16	1883	c.1821T>A	c.(1819-1821)GCT>GCA	p.A607A		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	607	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GTTCCCATGAAGCAGTATTGT	0.388000										HNSCC(35;0.089)			119	93					0	0	0	0
PIK3CA	5290	broad.mit.edu	37	3	178952072	178952072	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:178952072A>G	uc003fjk.2	+	21	3284	c.3127A>G	c.(3127-3129)ATG>GTG	p.M1043V		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	1043	PI3K/PI4K.		M -> I (in cancer; shows an increase in lipid kinase activity).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.M1043I(31)|p.M1043V(15)|p.M1043T(3)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			CATGAAACAAATGAATGATGC	0.368000		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			17	79					0	0	0	0
MFSD7	84179	broad.mit.edu	37	4	680328	680328	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:680328C>T	uc003gay.2	-	2	344	c.287G>A	c.(286-288)CGT>CAT	p.R96H	MFSD7_uc003gaw.2_5'Flank|MFSD7_uc003gax.2_Missense_Mutation_p.R96H|MFSD7_uc003gaz.2_Missense_Mutation_p.R74H|MFSD7_uc003gba.2_Missense_Mutation_p.R96H|MFSD7_uc003gbb.1_Missense_Mutation_p.R32H	NM_032219	NP_115595	Q6UXD7	MFSD7_HUMAN	major facilitator superfamily domain containing	96					transmembrane transport	integral to membrane					0						CACCGCCGCACGGAGCCCGAC	0.662000													13	55					0	0	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2306775	2306775	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:2306775G>T	uc003gex.1	-	8	1611	c.1292C>A	c.(1291-1293)GCC>GAC	p.A431D	ZFYVE28_uc011bvk.1_Missense_Mutation_p.A361D|ZFYVE28_uc011bvl.1_Missense_Mutation_p.A401D|ZFYVE28_uc003gew.1_Missense_Mutation_p.A317D	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	431					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						CTGGGGGTCGGCCCAGGTACT	0.662000													30	49					2.09667e-21	2.94015e-21	1	0
GABRB1	2560	broad.mit.edu	37	4	47163273	47163273	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:47163273C>T	uc003gxh.2	+	4	622	c.248C>T	c.(247-249)ACA>ATA	p.T83I	GABRB1_uc011bze.1_Missense_Mutation_p.T13I	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	83	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CAGGATTATACACTCACCATG	0.353000													12	36					0	0	0	0
GABRB1	2560	broad.mit.edu	37	4	47427742	47427742	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:47427742A>T	uc003gxh.2	+	9	1506	c.1132A>T	c.(1132-1134)ACG>TCG	p.T378S	GABRB1_uc011bze.1_Missense_Mutation_p.T308S	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	378	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CCGGAATGAGACGAGTGGCTC	0.587000													22	73					0	0	0	0
EPHA5	2044	broad.mit.edu	37	4	66213826	66213826	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:66213826C>A	uc003hcy.2	-	15	2797	c.2604G>T	c.(2602-2604)ATG>ATT	p.M868I	EPHA5_uc003hcx.2_Missense_Mutation_p.M800I|EPHA5_uc003hcz.2_Missense_Mutation_p.M846I|EPHA5_uc011cah.1_Missense_Mutation_p.M869I|EPHA5_uc011cai.1_Missense_Mutation_p.M847I|EPHA5_uc003hda.2_Missense_Mutation_p.M869I	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	868	Cytoplasmic (Potential).|Protein kinase.				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						CAACTTCCCACATTACTATTC	0.423000										TSP Lung(17;0.13)			43	102					1.23103e-26	1.74634e-26	1	0
AFP	174	broad.mit.edu	37	4	74309071	74309071	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:74309071C>T	uc003hgz.1	+	6	670	c.623C>T	c.(622-624)ACA>ATA	p.T208I	AFP_uc003hha.1_Missense_Mutation_p.T208I|AFP_uc011cbg.1_5'UTR	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	208	Albumin 1.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TAGGCAGCAACAGTTACAAAA	0.323000									Alpha-Fetoprotein_Hereditary_Persistence_of				14	31					0	0	0	0
AFM	173	broad.mit.edu	37	4	74364895	74364895	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:74364895G>T	uc003hhb.2	+	11	1385	c.1354G>T	c.(1354-1356)GAG>TAG	p.E452*		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	452	Albumin 3.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GTCTCTTGGCGAGAAAATGGT	0.443000													13	48					4.36969e-10	5.22649e-10	1	0
HERC6	55008	broad.mit.edu	37	4	89317238	89317239	+	Missense_Mutation	DNP	AG	CT	CT			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:89317238_89317239AG>CT	uc011cdi.1	+	6	1014_1015	c.831_832AG>CT	c.(829-834)AGAGGT>AGCTGT	p.277_278RG>SC	HERC6_uc003hrp.1_RNA|HERC6_uc011cdj.1_Missense_Mutation_p.277_278RG>SC|HERC6_uc011cdk.1_RNA|HERC6_uc011cdl.1_RNA	NM_017912	NP_060382	Q8IVU3	HERC6_HUMAN	hect domain and RLD 6 isoform 1	277_278	RCC1 5.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytosol	ubiquitin-protein ligase activity			lung(3)|ovary(1)|kidney(1)	5		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000222)		CTGAGAAGAGAGGTCCACAACT	0.431000													14	28					0	0	0	0
CFI	3426	broad.mit.edu	37	4	110667554	110667554	+	Missense_Mutation	SNP	T	A	A	rs121964912		TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:110667554T>A	uc003hzr.3	-	11	1461	c.1253A>T	c.(1252-1254)CAT>CTT	p.H418L	CFI_uc003hzq.2_Missense_Mutation_p.H215L|CFI_uc011cft.1_Missense_Mutation_p.H426L|CFI_uc003hzs.3_Missense_Mutation_p.H411L	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	418	Peptidase S1.		H -> L (in CFI deficiency).		complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		GTAGTTTTCATGGAAAATAAT	0.373000													38	22					0	0	0	0
ENPEP	2028	broad.mit.edu	37	4	111464192	111464192	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:111464192G>T	uc003iab.3	+	13	2308	c.1966G>T	c.(1966-1968)GCA>TCA	p.A656S		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	656	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	AGCAGATCGTGCAAGTCTTAT	0.323000													35	53					2.24722e-20	3.11546e-20	1	0
C4orf31	79625	broad.mit.edu	37	4	121957957	121957957	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:121957957C>T	uc003idq.1	-	4	1696	c.1169G>A	c.(1168-1170)AGA>AAA	p.R390K		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	390											0						CCCATCTCTTCTCACTTGGAT	0.433000													28	47					0	0	0	0
PCDH10	57575	broad.mit.edu	37	4	134084185	134084185	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:134084185G>T	uc003iha.2	+	4	3677	c.2851G>T	c.(2851-2853)GAT>TAT	p.D951Y		NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	951	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		GGGCCACTCAGATCGGTGCTG	0.488000													19	42					6.33239e-15	8.307e-15	1	0
NR3C2	4306	broad.mit.edu	37	4	149035331	149035331	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:149035331G>A	uc003ilj.3	-	8	3057	c.2723C>T	c.(2722-2724)ACT>ATT	p.T908I	NR3C2_uc003ilk.3_Missense_Mutation_p.T791I|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	908	Steroid-binding.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	GGGACACTTAGTTACCATCTT	0.473000													6	12					0	0	0	0
ANP32C	23520	broad.mit.edu	37	4	165118636	165118636	+	Silent	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:165118636C>A	uc011cjk.1	-	1	228	c.228G>T	c.(226-228)CTG>CTT	p.L76L	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	76	LRR 2.										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		CCAATACTTCCAGGCCCCCTG	0.403000													24	45					1.22574e-08	1.43788e-08	1	0
TRIO	7204	broad.mit.edu	37	5	14485341	14485341	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr5:14485341G>C	uc003jff.2	+	47	6827	c.6821G>C	c.(6820-6822)CGC>CCC	p.R2274P	TRIO_uc003jfg.2_RNA|TRIO_uc003jfh.1_Missense_Mutation_p.R1923P	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2274					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GAAAACCAGCGCAATTTTTTA	0.398000													20	74					0	0	0	0
MARCH11	441061	broad.mit.edu	37	5	16067611	16067611	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr5:16067611C>G	uc003jfo.2	-	4	1391	c.1178G>C	c.(1177-1179)GGG>GCG	p.G393A	MARCH11_uc010itw.1_Missense_Mutation_p.G149A	NM_001102562	NP_001096032	A6NNE9	MARHB_HUMAN	membrane-associated ring finger (C3HC4) 11	393						cytoplasmic vesicle membrane|integral to membrane	ligase activity|zinc ion binding				0						CACAACCTCCCCCGAGCTGTT	0.453000													68	220					0	0	0	0
PRDM9	56979	broad.mit.edu	37	5	23522816	23522816	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr5:23522816C>A	uc003jgo.2	+	8	886	c.704C>A	c.(703-705)CCC>CAC	p.P235H		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	235					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AAGGGGCACCCCAACCGTTCA	0.562000										HNSCC(3;0.000094)			13	25					2.68362e-12	3.39276e-12	1	0
PRDM9	56979	broad.mit.edu	37	5	23527008	23527008	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr5:23527008G>A	uc003jgo.2	+	11	1993	c.1811G>A	c.(1810-1812)GGG>GAG	p.G604E		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	604					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ACACACACAGGGGAGAAGCCC	0.602000										HNSCC(3;0.000094)			36	93					0	0	0	0
Unknown	0	broad.mit.edu	37	5	28927036	28927036	+	RNA	SNP	A	G	G	rs434405	by1000genomes	TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr5:28927036A>G	uc003jgz.1	+	1		c.60A>G								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		CTCAGTCTGCAGCCAAGACTC	0.577000													6	21					0	0	0	0
CDH6	1004	broad.mit.edu	37	5	31323320	31323320	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr5:31323320G>T	uc003jhe.1	+	12	2604	c.2278G>T	c.(2278-2280)GCA>TCA	p.A760S		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	760	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						GACCACGGATGCAGATCAAGA	0.532000													24	39					9.95505e-16	1.33463e-15	1	0
HEATR7B2	133558	broad.mit.edu	37	5	41004569	41004569	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr5:41004569C>A	uc003jmj.3	-	37	4563	c.4073G>T	c.(4072-4074)CGC>CTC	p.R1358L	HEATR7B2_uc003jmi.3_Missense_Mutation_p.R913L	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1358							binding			ovary(6)|central_nervous_system(2)	8						GACTTCAGTGCGAGCTAGGTG	0.408000													11	18					0.000673444	0.000708277	1	0
CEP120	153241	broad.mit.edu	37	5	122718431	122718431	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr5:122718431C>A	uc003ktk.2	-	14	2095	c.2013G>T	c.(2011-2013)CAG>CAT	p.Q671H	CEP120_uc011cwq.1_Missense_Mutation_p.Q480H|CEP120_uc010jcz.1_Missense_Mutation_p.Q645H	NM_153223	NP_694955	Q8N960	CE120_HUMAN	coiled-coil domain containing 100	671	Potential.					centrosome				ovary(1)	1						AAAAAGTAACCTGATTTTCAA	0.363000													6	7					0.000157383	0.000168428	1	0
PCDHA1	56147	broad.mit.edu	37	5	140167837	140167837	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr5:140167837C>A	uc003lhb.2	+	1	1962	c.1962C>A	c.(1960-1962)CAC>CAA	p.H654Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lgz.2_Missense_Mutation_p.H654Q	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	654	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAAGGATCACGGTGAGCCGG	0.662000													30	45					8.88839e-20	1.21841e-19	1	0
Unknown	0	broad.mit.edu	37	5	177483171	177483171	+	IGR	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr5:177483171C>T								FAM153C (7083 upstream) : N4BP3 (57385 downstream)																							AGACTTTATCCAAGGAGGAAG	0.483000													5	9					0	0	0	0
NEDD9	4739	broad.mit.edu	37	6	11192580	11192580	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:11192580C>G	uc003mzv.2	-	4	828	c.661G>C	c.(661-663)GGG>CGG	p.G221R	NEDD9_uc010joz.2_Missense_Mutation_p.G221R|NEDD9_uc003mzw.3_Missense_Mutation_p.G75R	NM_006403	NP_006394	Q14511	CASL_HUMAN	neural precursor cell expressed, developmentally	221	Interacts strongly with spindle- regulatory protein D1M1.				actin filament bundle assembly|cell adhesion|cell division|integrin-mediated signaling pathway|mitosis|regulation of growth	cell cortex|focal adhesion|Golgi apparatus|lamellipodium|nucleus	protein binding				0	Breast(50;0.0768)|Ovarian(93;0.152)	all_hematologic(90;0.135)	Epithelial(50;0.0647)|all cancers(50;0.179)			TCACTCACCCCTTTTGTAGGC	0.517000													10	14					0	0	0	0
PGBD1	84547	broad.mit.edu	37	6	28269300	28269300	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:28269300C>G	uc003nky.2	+	7	2039	c.1669C>G	c.(1669-1671)CAA>GAA	p.Q557E	PGBD1_uc003nkz.2_Missense_Mutation_p.Q557E	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	557					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						TGATAGTGACCAATTCCTGAA	0.363000													17	47					0	0	0	0
KIAA1949	170954	broad.mit.edu	37	6	30647078	30647078	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:30647078G>C	uc003nra.2	-	3	1931	c.1700C>G	c.(1699-1701)CCT>CGT	p.P567R	KIAA1949_uc003nrb.3_Missense_Mutation_p.P567R	NM_001134870	NP_001128342	Q6NYC8	PHTNS_HUMAN	phostensin	567						cytoplasm|cytoskeleton	actin binding				0						GGGGACCTCAGGCTCCGGGCC	0.637000													22	19					0	0	0	0
DLK2	65989	broad.mit.edu	37	6	43418549	43418549	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:43418549C>G	uc003ova.2	-	6	1089	c.880G>C	c.(880-882)GTG>CTG	p.V294L	DLK2_uc003ovb.2_Missense_Mutation_p.V294L	NM_023932	NP_076421	Q6UY11	DLK2_HUMAN	EGF-like-domain, multiple 9 precursor	294	Extracellular (Potential).					integral to membrane	calcium ion binding				0	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CTCCGCACCACCTCCTTCACT	0.657000													47	130					0	0	0	0
ENPP4	22875	broad.mit.edu	37	6	46108910	46108910	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:46108910G>T	uc003oxy.2	+	3	1207	c.948G>T	c.(946-948)TTG>TTT	p.L316F		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	316	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						CCATTATTTTGGTTGCCGATG	0.333000													11	47					4.36969e-10	5.22649e-10	1	0
RHAG	6005	broad.mit.edu	37	6	49587000	49587000	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:49587000C>A	uc003ozk.3	-	2	295	c.233G>T	c.(232-234)AGC>ATC	p.S78I	RHAG_uc010jzl.2_Missense_Mutation_p.S78I|RHAG_uc010jzm.2_Missense_Mutation_p.S78I	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	78	Cytoplasmic (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					ACCCACACTGCTGAAGCCATA	0.438000													22	54					5.35356e-11	6.6308e-11	1	0
PKHD1	5314	broad.mit.edu	37	6	51923189	51923189	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:51923189C>T	uc003pah.1	-	16	1720	c.1444G>A	c.(1444-1446)GTG>ATG	p.V482M	PKHD1_uc003pai.2_Missense_Mutation_p.V482M	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	482	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GTGGTGACCACATCAGGATTC	0.547000													47	96					0	0	0	0
IMPG1	3617	broad.mit.edu	37	6	76751702	76751702	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:76751702C>A	uc003pik.1	-	2	339	c.209G>T	c.(208-210)AGA>ATA	p.R70I		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	70					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				AAATGCGGATCTTTTTGTTCG	0.373000													34	32					8.16277e-20	1.12526e-19	1	0
SOBP	55084	broad.mit.edu	37	6	107955647	107955647	+	Silent	SNP	A	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:107955647A>T	uc003prx.2	+	6	2103	c.1599A>T	c.(1597-1599)CTA>CTT	p.L533L		NM_018013	NP_060483	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog	533	Pro-rich.						metal ion binding			ovary(1)	1		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		TCGTGCCCCTACCGGTGCCCA	0.667000													16	22					0	0	0	0
REV3L	5980	broad.mit.edu	37	6	111714134	111714134	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:111714134A>G	uc003puy.3	-	5	930	c.607T>C	c.(607-609)TCA>CCA	p.S203P	REV3L_uc003pux.3_Missense_Mutation_p.S125P|REV3L_uc003puz.3_Missense_Mutation_p.S125P	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	203					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		GAATTTCCTGATAAATGATTC	0.294000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					21	15					0	0	0	0
HIVEP2	3097	broad.mit.edu	37	6	143090889	143090889	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:143090889C>T	uc003qjd.2	-	5	5730	c.4987G>A	c.(4987-4989)GCC>ACC	p.A1663T		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1663					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		TTGAAGGTGGCCTGTTGCACA	0.463000													32	45					0	0	0	0
UTRN	7402	broad.mit.edu	37	6	145142116	145142116	+	Silent	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:145142116G>A	uc003qkt.2	+	65	9548	c.9456G>A	c.(9454-9456)CTG>CTA	p.L3152L		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	3152	Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		TTGGTTACCTGCCTGTCCAGA	0.378000													34	48					0	0	0	0
SNX9	51429	broad.mit.edu	37	6	158359775	158359775	+	Silent	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:158359775G>A	uc003qqv.1	+	16	1817	c.1644G>A	c.(1642-1644)TTG>TTA	p.L548L		NM_016224	NP_057308	Q9Y5X1	SNX9_HUMAN	sorting nexin 9	548	BAR.				cell communication|intracellular protein transport|lipid tube assembly|positive regulation of GTPase activity|positive regulation of protein oligomerization|receptor-mediated endocytosis	clathrin-coated vesicle|cytoplasmic vesicle membrane|extrinsic to internal side of plasma membrane|ruffle|trans-Golgi network	1-phosphatidylinositol binding|protein homodimerization activity|ubiquitin protein ligase binding				0		Breast(66;0.000776)|Ovarian(120;0.0303)|Prostate(117;0.167)		OV - Ovarian serous cystadenocarcinoma(65;8.06e-18)|BRCA - Breast invasive adenocarcinoma(81;4.48e-05)		CTTACGCGTTGCAAGGTAAGA	0.413000													83	126					0	0	0	0
TMEM195	392636	broad.mit.edu	37	7	15240953	15240953	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:15240953C>A	uc003stb.1	-	13	1465	c.1295G>T	c.(1294-1296)GGA>GTA	p.G432V		NM_001004320	NP_001004320	Q6ZNB7	ALKMO_HUMAN	transmembrane protein 195	432	Helical; (Potential).				ether lipid metabolic process|fatty acid biosynthetic process|membrane lipid metabolic process	endoplasmic reticulum membrane|integral to membrane	glyceryl-ether monooxygenase activity|iron ion binding				0						GCTTCTAACTCCCCAGAAAGC	0.323000													21	34					1.55811e-20	2.17245e-20	1	0
RAPGEF5	9771	broad.mit.edu	37	7	22233539	22233539	+	5'Flank	SNP	T	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:22233539T>A	uc011jym.1	-						RAPGEF5_uc003svg.2_Missense_Mutation_p.H217L			Q92565	RPGF5_HUMAN	Synthetic construct DNA, clone: pF1KSDA0277, Homo sapiens RAPGEF5 gene for Rap guanine nucleotide exchange factor 5, complete cds, without stop codon, in Flexi system.						nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						TCACCTCCAATGGCTCTCCGC	0.418000													65	266					0	0	0	0
GHRHR	2692	broad.mit.edu	37	7	31013712	31013712	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:31013712G>T	uc003tbx.2	+	7	758	c.710G>T	c.(709-711)AGC>ATC	p.S237I	GHRHR_uc003tbw.1_Missense_Mutation_p.S237I|GHRHR_uc003tby.2_Missense_Mutation_p.S173I|GHRHR_uc003tbz.2_Intron	NM_000823	NP_000814	Q02643	GHRHR_HUMAN	growth hormone releasing hormone receptor	237	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to estrogen stimulus|response to glucocorticoid stimulus	cell surface|integral to membrane|nuclear inner membrane|nuclear matrix|nuclear outer membrane|plasma membrane|stored secretory granule	growth factor binding|growth hormone-releasing hormone receptor activity|peptide hormone binding			ovary(2)|lung(1)|breast(1)|large_intestine(1)	5					Sermorelin(DB00010)	ACCTCCCCCAGCTCAAGGAGA	0.637000													65	92					2.10938e-32	3.0455e-32	1	0
WBSCR17	64409	broad.mit.edu	37	7	70800594	70800594	+	Silent	SNP	T	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:70800594T>C	uc003tvy.2	+	2	297	c.297T>C	c.(295-297)CTT>CTC	p.L99L	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	99	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				AAGGGGGCCTTCCGGCTACTC	0.458000													14	41					0	0	0	0
SEMA3E	9723	broad.mit.edu	37	7	82997282	82997282	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:82997282C>A	uc003uhy.1	-	17	2414	c.1948G>T	c.(1948-1950)GGG>TGG	p.G650W		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	650	Ig-like C2-type.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				AAATAGGTCCCAGCATCTGAT	0.418000													28	105					3.90053e-15	5.14448e-15	1	0
MGC26647	219557	broad.mit.edu	37	7	88423573	88423574	+	Missense_Mutation	DNP	TG	GT	GT			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:88423573_88423574TG>GT	uc003ujv.2	-	2	865_866	c.683_684CA>AC	c.(682-684)ACA>AAC	p.T228N	ZNF804B_uc011khi.1_Intron	NM_152706	NP_689919	Q8TBZ9	CG062_HUMAN	hypothetical protein LOC219557	228											0	Esophageal squamous(14;0.00802)|all_hematologic(106;0.109)|Lung NSC(181;0.168)|all_lung(186;0.169)		STAD - Stomach adenocarcinoma(171;0.229)			TGTTTATAAATGTTGCCGGGTC	0.450000													20	49					0	0	0	0
ZNF804B	219578	broad.mit.edu	37	7	88965792	88965792	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:88965792C>A	uc011khi.1	+	4	4034	c.3496C>A	c.(3496-3498)CAG>AAG	p.Q1166K		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1166						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GCTACAAGCCCAGCAGCATAT	0.448000										HNSCC(36;0.09)			18	42					1.02788e-11	1.2928e-11	1	0
C7orf63	79846	broad.mit.edu	37	7	89887457	89887457	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:89887457C>T	uc010lep.2	+	3	477	c.226C>T	c.(226-228)CAG>TAG	p.Q76*	C7orf63_uc003ukf.2_RNA|C7orf63_uc003ukg.2_5'UTR|C7orf63_uc011khj.1_Nonsense_Mutation_p.Q76*|C7orf63_uc010leo.2_Nonsense_Mutation_p.Q76*	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	76							binding			ovary(1)	1						GAAACTGGTACAGTGTTATCA	0.259000													27	41					0	0	0	0
PON1	5444	broad.mit.edu	37	7	94944721	94944721	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:94944721G>T	uc003uns.2	-	4	380	c.283C>A	c.(283-285)CCA>ACA	p.P95T	PON1_uc011kih.1_Missense_Mutation_p.P95T	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	95					aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	AACACTGTTGGATCTTCTTCA	0.383000													14	57					1.49906e-05	1.66259e-05	1	0
SLC12A9	56996	broad.mit.edu	37	7	100459152	100459152	+	Silent	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:100459152G>T	uc003uwp.2	+	11	1624	c.1482G>T	c.(1480-1482)GCG>GCT	p.A494A	SLC12A9_uc003uwq.2_Silent_p.A405A|SLC12A9_uc011kki.1_Silent_p.A25A|SLC12A9_uc003uwr.2_Silent_p.A230A|SLC12A9_uc003uws.2_Silent_p.A25A|SLC12A9_uc003uwt.2_Silent_p.A230A|SLC12A9_uc003uwv.2_Silent_p.A25A	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	494	Extracellular (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					TGCTCACCGCGCGAGGAGGCC	0.652000													41	91					9.85913e-13	1.26612e-12	1	0
SLC26A5	375611	broad.mit.edu	37	7	103018200	103018200	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:103018200T>A	uc003vbz.2	-	18	2068	c.1832A>T	c.(1831-1833)GAT>GTT	p.D611V	SLC26A5_uc003vbt.1_Missense_Mutation_p.D611V|SLC26A5_uc003vbu.1_Intron|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.D579V|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	611	Cytoplasmic (Potential).|STAS.				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						TACTTCACCATCCTCTTCTTC	0.408000													31	114					0	0	0	0
LMOD2	442721	broad.mit.edu	37	7	123302930	123302930	+	Silent	SNP	T	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:123302930T>C	uc003vky.2	+	2	1447	c.1290T>C	c.(1288-1290)CCT>CCC	p.P430P		NM_207163	NP_997046	Q6P5Q4	LMOD2_HUMAN	leiomodin 2 (cardiac)	430	Pro-rich.					cytoskeleton	actin binding|tropomyosin binding				0						ctcctcctcctccccctcctt	0.294000													2	2					0	0	0	0
DGKI	9162	broad.mit.edu	37	7	137128844	137128844	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:137128844G>A	uc003vtt.2	-	29	2765	c.2764C>T	c.(2764-2766)CCA>TCA	p.P922S	DGKI_uc003vtu.2_Missense_Mutation_p.P591S	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	922					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						GAAGAGACTGGTGACCTAAAA	0.299000													14	15					0	0	0	0
TRY6	154754	broad.mit.edu	37	7	142479940	142479940	+	Silent	SNP	C	T	T	rs58649169	by1000genomes	TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:142479940C>T	uc011ksq.1	+	2	155	c.72C>T	c.(70-72)ATC>ATT	p.I24I	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						ATGACAAGATCGTTGGGGGCT	0.557000													19	65					0	0	0	0
GIMAP8	155038	broad.mit.edu	37	7	150171132	150171132	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:150171132C>T	uc003whj.2	+	4	1045	c.715C>T	c.(715-717)CCC>TCC	p.P239S		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	239						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GTCCACAGGACCCGAGCAGAA	0.552000													25	99					0	0	0	0
DOCK5	80005	broad.mit.edu	37	8	25174610	25174610	+	Missense_Mutation	SNP	C	T	T	rs61732769	byFrequency	TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:25174610C>T	uc003xeg.2	+	14	1543	c.1406C>T	c.(1405-1407)ACG>ATG	p.T469M	DOCK5_uc010luf.1_RNA|DOCK5_uc003xeh.1_Missense_Mutation_p.T183M|DOCK5_uc003xei.2_Missense_Mutation_p.T39M	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	469	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		GTGGAGGTGACGATGTCTGTG	0.498000													39	191					0	0	0	0
KIF13B	23303	broad.mit.edu	37	8	28929820	28929820	+	Missense_Mutation	SNP	A	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:28929820A>C	uc003xhh.3	-	39	4594	c.4535T>G	c.(4534-4536)ATG>AGG	p.M1512R	KIF13B_uc011laz.1_Missense_Mutation_p.M31R	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	1512					microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		GTCAGGGCCCATCTCCGGCTG	0.587000													3	7					0	0	0	0
XKR4	114786	broad.mit.edu	37	8	56435942	56435942	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:56435942T>C	uc003xsf.2	+	3	1141	c.1109T>C	c.(1108-1110)ATG>ACG	p.M370T		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	370	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			ATCAGCTACATGGCCGTCATC	0.587000													35	55					0	0	0	0
XKR4	114786	broad.mit.edu	37	8	56436416	56436416	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:56436416G>A	uc003xsf.2	+	3	1615	c.1583G>A	c.(1582-1584)TGT>TAT	p.C528Y		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	528						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			AGTTGTGCTTGTGAGGACCCA	0.532000													28	89					0	0	0	0
ASPH	444	broad.mit.edu	37	8	62475423	62475423	+	Silent	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:62475423G>A	uc003xuj.2	-	18	1586	c.1317C>T	c.(1315-1317)TCC>TCT	p.S439S	ASPH_uc011leg.1_Silent_p.S410S|ASPH_uc003xuo.2_Silent_p.S420S	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	439	Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	GGGTAAGCAGGGAACCTCTCA	0.358000													28	48					0	0	0	0
MIR124-2	406908	broad.mit.edu	37	8	65291796	65291796	+	RNA	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:65291796G>T	hsa-mir-124-2|MI0000444	+			c.91G>T			uc003xvd.2_Intron|uc003xve.2_Intron|uc003xvf.2_RNA																	0						CAAGAGCGGAGCCTACGGCTG	0.483000													8	20					0.00136819	0.00142666	1	0
SULF1	23213	broad.mit.edu	37	8	70488375	70488375	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:70488375C>T	uc010lza.1	+	6	1060	c.343C>T	c.(343-345)CCC>TCC	p.P115S	SULF1_uc003xyd.2_Missense_Mutation_p.P115S|SULF1_uc003xye.2_Missense_Mutation_p.P115S|SULF1_uc003xyf.2_Missense_Mutation_p.P115S|SULF1_uc003xyg.2_Missense_Mutation_p.P115S	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	115					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			CTGCTCTTCCCCCTCGTGGCA	0.517000													22	40					0	0	0	0
KCNB2	9312	broad.mit.edu	37	8	73849810	73849810	+	Silent	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:73849810C>T	uc003xzb.2	+	3	2808	c.2220C>T	c.(2218-2220)ACC>ACT	p.T740T		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	740	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TGCCAGTCACCACAGCTGACT	0.552000													95	248					0	0	0	0
MRPS28	28957	broad.mit.edu	37	8	80942288	80942288	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:80942288C>T	uc003ybp.2	-	1	219	c.196G>A	c.(196-198)GTG>ATG	p.V66M	MRPS28_uc003ybo.2_Intron|TPD52_uc010lzr.2_Intron	NM_014018	NP_054737	Q9Y2Q9	RT28_HUMAN	mitochondrial ribosomal protein S28	66						mitochondrial small ribosomal subunit					0	Lung NSC(7;1.86e-06)|all_lung(9;6.91e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00769)|Epithelial(68;0.0208)|all cancers(69;0.0805)			AGGGGCTCCACCTTCTGTAGA	0.652000													10	27					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	114111059	114111059	+	Silent	SNP	G	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:114111059G>C	uc003ynu.2	-	5	1002	c.843C>G	c.(841-843)CTC>CTG	p.L281L	CSMD3_uc003ynt.2_Silent_p.L241L|CSMD3_uc011lhx.1_Silent_p.L281L|CSMD3_uc010mcx.1_Silent_p.L281L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	281	Extracellular (Potential).|CUB 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CAGTAAATATGAGTGAAATTG	0.383000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			10	44					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	114290843	114290843	+	Missense_Mutation	SNP	A	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:114290843A>T	uc003ynu.2	-	3	651	c.492T>A	c.(490-492)CAT>CAA	p.H164Q	CSMD3_uc003ynt.2_Missense_Mutation_p.H124Q|CSMD3_uc011lhx.1_Missense_Mutation_p.H164Q|CSMD3_uc010mcx.1_Missense_Mutation_p.H164Q	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	164	Extracellular (Potential).|CUB 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCTTAAATCCATGAGCACTAA	0.378000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			15	56					0	0	0	0
ZHX1	11244	broad.mit.edu	37	8	124265876	124265876	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:124265876T>C	uc003yqe.2	-	3	2741	c.2311A>G	c.(2311-2313)AGG>GGG	p.R771G	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Missense_Mutation_p.R771G|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Missense_Mutation_p.R771G	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	771					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			GATGGTCCCCTGTCCCAGTTG	0.453000													92	136					0	0	0	0
Unknown	0	broad.mit.edu	37	9	21278463	21278463	+	RNA	SNP	A	G	G	rs10120675	by1000genomes	TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr9:21278463A>G	uc003zou.1	-	1		c.100T>C								Messenger RNA for human leukocyte (alpha) interferon.																		CTGTCCTTCAAGTAAGAAAAA	0.478000													2	3					0	0	0	0
ZCCHC7	84186	broad.mit.edu	37	9	37356934	37356934	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr9:37356934G>A	uc003zzq.2	+	9	1474	c.1301G>A	c.(1300-1302)TGG>TAG	p.W434*	ZCCHC7_uc011lqh.1_Nonsense_Mutation_p.W144*|ZCCHC7_uc011lqi.1_Nonsense_Mutation_p.W433*|ZCCHC7_uc010mlt.2_Nonsense_Mutation_p.W433*	NM_032226	NP_115602	Q8N3Z6	ZCHC7_HUMAN	zinc finger, CCHC domain containing 7	434							nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.0137)		CGTGCCTCATGGAAAAGCAAC	0.433000													18	8					0	0	0	0
FAM75A6	389730	broad.mit.edu	37	9	43626815	43626815	+	Silent	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr9:43626815G>A	uc011lrb.1	-	4	1901	c.1872C>T	c.(1870-1872)GAC>GAT	p.D624D		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	624						integral to membrane					0						CTGGTGATTCGTCCCGAAGCT	0.547000													6	6					0	0	0	0
COL15A1	1306	broad.mit.edu	37	9	101798616	101798616	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr9:101798616G>T	uc004azb.1	+	21	2553	c.2347G>T	c.(2347-2349)GCC>TCC	p.A783S		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	783	Triple-helical region 3 (COL3).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GATGGATGGAGCCAGTATTGT	0.507000													63	26					2.09386e-48	3.09638e-48	1	0
SLC2A6	11182	broad.mit.edu	37	9	136339125	136339125	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr9:136339125C>T	uc004cee.2	-	7	1108	c.1013G>A	c.(1012-1014)CGC>CAC	p.R338H	SLC2A6_uc004cef.2_Missense_Mutation_p.R338H|SLC2A6_uc004ceg.2_Missense_Mutation_p.R315H	NM_017585	NP_060055	Q9UGQ3	GTR6_HUMAN	solute carrier family 2 (facilitated glucose	338	Cytoplasmic (Potential).					integral to membrane|plasma membrane	D-glucose transmembrane transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;8.47e-08)|Epithelial(140;9.37e-07)|all cancers(34;1.03e-05)		CAGCACCTTGCGGCCTGCGAG	0.692000													7	27					0	0	0	0
FCN1	2219	broad.mit.edu	37	9	137806602	137806602	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr9:137806602C>A	uc004cfi.2	-	3	363	c.271G>T	c.(271-273)GGA>TGA	p.G91*		NM_002003	NP_001994	O00602	FCN1_HUMAN	ficolin 1 precursor	91	Collagen-like.				opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|receptor binding|sugar binding			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.46e-08)|Epithelial(140;6.01e-08)|all cancers(34;3.69e-07)		CCCTGGTTACCTTTGGGCCCC	0.463000													6	18					2.7689e-08	3.21719e-08	1	0
TIMP1	7076	broad.mit.edu	37	X	47442836	47442836	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chrX:47442836G>A	uc004dif.2	+	2	214	c.22G>A	c.(22-24)GCT>ACT	p.A8T	SYN1_uc004did.2_Intron|SYN1_uc004die.2_Intron|TIMP1_uc011mlr.1_5'UTR|TIMP1_uc010nht.1_5'UTR	NM_003254	NP_003245	P01033	TIMP1_HUMAN	tissue inhibitor of metalloproteinase 1	8					erythrocyte maturation|negative regulation of membrane protein ectodomain proteolysis|platelet activation|platelet degranulation|positive regulation of cell proliferation	platelet alpha granule lumen	metal ion binding|metalloendopeptidase inhibitor activity|protein binding				0						TGAGCCCCTGGCTTCTGGCAT	0.657000													15	51					0	0	0	0
FTSJ1	24140	broad.mit.edu	37	X	48337083	48337083	+	Silent	SNP	G	T	T	rs138008946	byFrequency	TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chrX:48337083G>T	uc004djo.1	+	4	593	c.270G>T	c.(268-270)GGG>GGT	p.G90G	FTSJ1_uc004djl.2_Silent_p.G90G|FTSJ1_uc004djm.2_Silent_p.G90G|FTSJ1_uc004djn.1_Silent_p.G90G|FTSJ1_uc004djp.1_Silent_p.G90G|FTSJ1_uc011mlw.1_Intron	NM_012280	NP_036412	Q9UET6	RRMJ1_HUMAN	FtsJ homolog 1 isoform a	90					RNA methylation|rRNA processing		methyltransferase activity|nucleic acid binding				0						AGATCCAGGGGGACATCACCC	0.532000													4	15					3.59834e-05	3.95493e-05	1	0
PLP2	5355	broad.mit.edu	37	X	49029528	49029528	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chrX:49029528C>T	uc004dmx.2	+	2	224	c.149C>T	c.(148-150)TCC>TTC	p.S50F		NM_002668	NP_002659	Q04941	PLP2_HUMAN	proteolipid protein 2 (colonic	50	Helical; (Potential).|MARVEL.				chemotaxis|cytokine-mediated signaling pathway	endoplasmic reticulum membrane|integral to membrane|membrane fraction|plasma membrane	chemokine binding|ion transmembrane transporter activity				0						CCAGGCTACTCCTCCCTGTCG	0.507000													14	3					0	0	0	0
SHROOM4	57477	broad.mit.edu	37	X	50376610	50376610	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chrX:50376610C>A	uc004dpe.2	-	4	2489	c.2463G>T	c.(2461-2463)TTG>TTT	p.L821F	SHROOM4_uc004dpd.3_RNA|SHROOM4_uc004dpf.1_Missense_Mutation_p.L705F	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	821					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					GATGGCGCCTCAATTCCCTAC	0.458000													26	74					1.04121e-07	1.19275e-07	1	0
TEX11	56159	broad.mit.edu	37	X	69945165	69945165	+	Nonsense_Mutation	SNP	A	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chrX:69945165A>C	uc004dyl.2	-	13	1079	c.917T>G	c.(916-918)TTA>TGA	p.L306*	TEX11_uc004dyk.2_5'Flank|TEX11_uc004dym.2_Nonsense_Mutation_p.L291*	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	306							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					TTTCATTTTTAAGAAAAGCCC	0.318000													12	46					0	0	0	0
TSIX	9383	broad.mit.edu	37	X	73046222	73046222	+	RNA	SNP	G	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chrX:73046222G>C	uc004ebn.2	+	1		c.34183G>C			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						ATACTGACTGGATTTTGGTGT	0.388000													9	9					0	0	0	0
CDR1	1038	broad.mit.edu	37	X	139865950	139865950	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chrX:139865950C>G	uc004fbg.1	-	1	774	c.582G>C	c.(580-582)TGG>TGC	p.W194C	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	194	5 X 6 AA approximate repeats.|3.										0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				TCCTGAAGATCCACGTCTTCC	0.438000													17	75					0	0	0	0
USP9Y	8287	broad.mit.edu	37	Y	14958426	14958426	+	Missense_Mutation	SNP	T	C	C			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chrY:14958426T>C	uc004fst.1	+	40	7682	c.6737T>C	c.(6736-6738)ATG>ACG	p.M2246T	USP9Y_uc010nwu.1_RNA	NM_004654	NP_004645	O00507	USP9Y_HUMAN	ubiquitin specific protease 9, Y-linked	2246					BMP signaling pathway|protein deubiquitination|spermatogenesis|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						TCATCAACAATGCAGTCTTCA	0.363000													35	17					0	0	0	0
SLC9A1	6548	broad.mit.edu	37	1	27428887	27428889	+	In_Frame_Del	DEL	GGT	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:27428887_27428889delGGT	uc001bnm.2	-	8	2433_2435	c.1807_1809delACC	c.(1807-1809)ACCdel	p.T603del	SLC9A1_uc001bnl.2_In_Frame_Del_p.T107del|SLC9A1_uc010ofk.1_In_Frame_Del_p.T264del	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	603	Cytoplasmic (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	GCATGGAGACGGTGGAGACGGCA	0.650													---	---	---							
Unknown	0	broad.mit.edu	37	1	48209112	48209114	+	IGR	DEL	TGG	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr1:48209112_48209114delTGG								FOXD2 (302750 upstream) : SKINTL (358273 downstream)																							gtgttggtgatggtggtggtggt	0.000													---	---	---							
EHF	26298	broad.mit.edu	37	11	34670626	34670627	+	Frame_Shift_Ins	INS	-	TG	TG			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr11:34670626_34670627insTG	uc001mvr.1	+	4	515_516	c.404_405insTG	c.(403-405)ACTfs	p.T135fs	EHF_uc009yke.1_Frame_Shift_Ins_p.T135fs|EHF_uc009ykf.1_Frame_Shift_Ins_p.T138fs	NM_012153	NP_036285	Q9NZC4	EHF_HUMAN	ets homologous factor	135					cell proliferation|epithelial cell differentiation|multicellular organismal development|positive regulation of transcription, DNA-dependent		protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(20;0.117)	Epithelial(1;0.055)|all cancers(1;0.137)|STAD - Stomach adenocarcinoma(6;0.235)			ACTGAACAAACTGGTGAGTAGT	0.525													---	---	---							
PTPN21	11099	broad.mit.edu	37	14	88940113	88940113	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr14:88940113delT	uc001xwv.3	-	14	2876	c.2545delA	c.(2545-2547)ATTfs	p.I849fs	PTPN21_uc010twc.1_Frame_Shift_Del_p.I645fs	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	849						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						AGAGGACCAATTTTTTTTGCA	0.393													---	---	---							
EML5	161436	broad.mit.edu	37	14	89171267	89171268	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr14:89171267_89171268insT	uc001xxg.2	-	14	2173_2174	c.1987_1988insA	c.(1987-1989)AGTfs	p.S663fs	EML5_uc001xxh.1_5'UTR	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	663						cytoplasm|microtubule				ovary(3)	3						AGAAGTAGCACTTTTTTGTTTC	0.302													---	---	---							
Unknown	0	broad.mit.edu	37	14	101908305	101908305	+	IGR	DEL	C	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr14:101908305delC								MIR656 (375167 upstream) : DIO3OS (110255 downstream)																							cccctcctttcccgccctcca	0.373													---	---	---							
HEXA	3073	broad.mit.edu	37	15	72638920	72638921	+	Frame_Shift_Ins	INS	-	GATA	GATA			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr15:72638920_72638921insGATA	uc002aun.3	-	11	1484_1485	c.1277_1278insTATC	c.(1276-1278)TCCfs	p.S426fs	uc002aug.2_RNA|CELF6_uc002auk.3_Intron|HEXA_uc010ukn.1_Frame_Shift_Ins_p.S437fs|HEXA_uc002auo.3_Frame_Shift_Ins_p.S289fs|HEXA_uc010bix.2_Frame_Shift_Ins_p.S426fs|HEXA_uc010biy.2_Frame_Shift_Ins_p.S289fs|HEXA_uc010uko.1_Frame_Shift_Ins_p.S252fs|HEXA_uc010biz.1_RNA	NM_000520	NP_000511	P06865	HEXA_HUMAN	hexosaminidase A preproprotein	426					cell death	lysosome	beta-N-acetylhexosaminidase activity|cation binding|protein heterodimerization activity			ovary(3)|upper_aerodigestive_tract(1)	4						CAGGGCCATAGGATATACGGTT	0.540													---	---	---							
TRIM72	493829	broad.mit.edu	37	16	31230629	31230629	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr16:31230629delG	uc002ebn.1	+	4	735	c.506delG	c.(505-507)CGGfs	p.R169fs	PYDC1_uc002ebo.2_5'Flank	NM_001008274	NP_001008275	Q6ZMU5	TRI72_HUMAN	tripartite motif-containing 72	169	Potential.				exocytosis|muscle organ development|muscle system process|plasma membrane repair|protein homooligomerization	cytoplasmic vesicle membrane|sarcolemma	phosphatidylserine binding|zinc ion binding				0						CGTCAGTTCCGGGGGGCCGTG	0.657													---	---	---							
ZNF18	7566	broad.mit.edu	37	17	11894342	11894342	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr17:11894342delC	uc002gng.1	-	5	1131	c.526delG	c.(526-528)GAGfs	p.E176fs	ZNF18_uc002gnh.1_Frame_Shift_Del_p.E176fs|ZNF18_uc002gni.1_Frame_Shift_Del_p.E176fs	NM_144680	NP_653281	P17022	ZNF18_HUMAN	zinc finger protein 18	176					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1				Colorectal(4;3.33e-05)|COAD - Colon adenocarcinoma(4;0.000494)|READ - Rectum adenocarcinoma(10;0.233)		CTCAGAAGCTCCCCAGGCCCT	0.522													---	---	---							
PLIN4	729359	broad.mit.edu	37	19	4510708	4510709	+	Frame_Shift_Ins	INS	-	GGGG	GGGG			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:4510708_4510709insGGGG	uc002mar.1	-	3	3221_3222	c.3221_3222insCCCC	c.(3220-3222)CCGfs	p.P1074fs	PLIN4_uc010dub.1_Frame_Shift_Ins_p.P98fs	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	1074						lipid particle|plasma membrane					0						TGCCAGAGAACGGGGCCTCTTG	0.653													---	---	---							
TMEM146	257062	broad.mit.edu	37	19	5754157	5754159	+	In_Frame_Del	DEL	AGG	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:5754157_5754159delAGG	uc002mda.2	+	13	1240_1242	c.1179_1181delAGG	c.(1177-1182)ACAGGA>ACA	p.G394del	TMEM146_uc010duj.1_In_Frame_Del_p.G52del	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	394	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGTTTCTGACAGGAGAATTTATA	0.458													---	---	---							
OR7G1	125962	broad.mit.edu	37	19	9226160	9226161	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:9226160_9226161delAA	uc002mks.1	-	1	279_280	c.279_280delTT	c.(277-282)ACTTACfs	p.T93fs		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	93_94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						CAGCCTGTGTAAGTGATACTCT	0.455													---	---	---							
EPN1	29924	broad.mit.edu	37	19	56206686	56206686	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr19:56206686delC	uc002qlw.2	+	11	2037	c.1695delC	c.(1693-1695)GGCfs	p.G565fs	EPN1_uc002qlv.2_Frame_Shift_Del_p.G539fs|EPN1_uc010etd.2_Frame_Shift_Del_p.G564fs|EPN1_uc002qlx.2_Frame_Shift_Del_p.G651fs	NM_001130072	NP_001123544	Q9Y6I3	EPN1_HUMAN	epsin 1 isoform b	565	Ala/Gly/Pro-rich.|3 X 3 AA repeats of N-P-F.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|cytoplasm|nucleus|plasma membrane	lipid binding				0		Colorectal(82;0.00244)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.112)		Tgcccccgggccccccggccc	0.582													---	---	---							
RAB11FIP5	26056	broad.mit.edu	37	2	73315279	73315279	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr2:73315279delG	uc002siu.3	-	3	1708	c.1467delC	c.(1465-1467)CCCfs	p.P489fs	RAB11FIP5_uc002sit.3_Frame_Shift_Del_p.P411fs	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	489					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						CCCCCAGGATGGGACCCCCCT	0.607													---	---	---							
C20orf132	140699	broad.mit.edu	37	20	35783537	35783537	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr20:35783537delG	uc010zvu.1	-	11	1124	c.1033delC	c.(1033-1035)CATfs	p.H345fs	C20orf132_uc002xgk.2_Intron|C20orf132_uc002xgm.2_Frame_Shift_Del_p.H345fs|C20orf132_uc002xgn.2_Intron	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0		Myeloproliferative disorder(115;0.00878)				TCCCGCTCATGGTCTTTGACT	0.493													---	---	---							
PTPRT	11122	broad.mit.edu	37	20	40979284	40979284	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr20:40979284delG	uc002xkg.2	-	11	2033	c.1849delC	c.(1849-1851)CGGfs	p.R617fs	PTPRT_uc010ggj.2_Frame_Shift_Del_p.R617fs	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	617	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGAGCTCCCCGGGACTGAGCG	0.527													---	---	---							
Unknown	0	broad.mit.edu	37	22	20151657	20151659	+	IGR	DEL	ACC	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr22:20151657_20151659delACC								ZDHHC8 (16128 upstream) : LOC150197 (42196 downstream)																							caccatcactaccaccaccacca	0.000													---	---	---							
FAM116B	414918	broad.mit.edu	37	22	50754808	50754808	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr22:50754808delG	uc011aru.1	-	7	622	c.550delC	c.(550-552)CTGfs	p.L184fs	FAM116B_uc011arv.1_Frame_Shift_Del_p.L184fs	NM_001001794	NP_001001794	Q8NEG7	F116B_HUMAN	family with sequence similarity 116, member B	184											0		all_cancers(38;4.34e-09)|all_epithelial(38;3.03e-08)|all_lung(38;0.00141)|Breast(42;0.00387)|Lung NSC(38;0.0199)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCTGCTTCCAGGCAGGGCGCC	0.632													---	---	---							
Unknown	0	broad.mit.edu	37	3	96496591	96496592	+	IGR	INS	-	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:96496591_96496592insA								None (None upstream) : EPHA6 (36833 downstream)																							CCACCACGAACAGCCATTCATG	0.426													---	---	---							
ABCC5	10057	broad.mit.edu	37	3	183665257	183665257	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr3:183665257delA	uc003fmg.2	-	23	3434	c.3269delT	c.(3268-3270)TTGfs	p.L1090fs	ABCC5_uc011bqt.1_Frame_Shift_Del_p.L618fs|ABCC5_uc010hxl.2_Frame_Shift_Del_p.L1047fs	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	1090	ABC transmembrane type-1 2.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			ACACGTAAACAAAAAAAAAGG	0.532													---	---	---							
Unknown	0	broad.mit.edu	37	4	81001706	81001706	+	IGR	DEL	C	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:81001706delC								ANTXR2 (7229 upstream) : PRDM8 (103733 downstream)																							TGCTGTCTTTCCCAACCTGCT	0.463													---	---	---							
TUBB4Q	56604	broad.mit.edu	37	4	190903696	190903696	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr4:190903696delG	uc011clg.1	-	4	1287	c.1284delC	c.(1282-1284)GCCfs	p.A428fs		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	429					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		CTCCTCCCTCGGCCGTGGCAT	0.537													---	---	---							
JAKMIP2	9832	broad.mit.edu	37	5	147012302	147012303	+	In_Frame_Ins	INS	-	TTG	TTG	rs3763095	byFrequency	TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr5:147012302_147012303insTTG	uc003loq.1	-	13	2098_2099	c.1716_1717insCAA	c.(1714-1719)insCAA	p.572_573insQ	JAKMIP2_uc011dbx.1_In_Frame_Ins_p.530_531insQ|JAKMIP2_uc003lor.1_In_Frame_Ins_p.551_552insQ|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_In_Frame_Ins_p.572_573insQ	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	572_573	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTGTAGTTCTTGTTGTAACC	0.371													---	---	---							
Unknown	0	broad.mit.edu	37	6	153603442	153603442	+	IGR	DEL	C	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:153603442delC								RGS17 (151053 upstream) : OPRM1 (728194 downstream)																							AGGACACAGGCCCCCCCAACA	0.423													---	---	---							
ARID1B	57492	broad.mit.edu	37	6	157100355	157100355	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr6:157100355delG	uc003qqn.2	+	1	1270	c.1118delG	c.(1117-1119)CGGfs	p.R373fs	ARID1B_uc003qqo.2_Frame_Shift_Del_p.R373fs|ARID1B_uc003qqp.2_Frame_Shift_Del_p.R373fs	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	431	Ala-rich.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		CCCATGATGCGGAGCTACGGC	0.597													---	---	---							
Unknown	0	broad.mit.edu	37	7	20867444	20867445	+	IGR	INS	-	A	A			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:20867444_20867445insA								RPL23P8 (5 upstream) : SP4 (600244 downstream)																							TTTGTTCCCAGAAAAAAAAAGA	0.307													---	---	---							
PON2	5445	broad.mit.edu	37	7	95039293	95039295	+	In_Frame_Del	DEL	AAC	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr7:95039293_95039295delAAC	uc003unv.2	-	6	734_736	c.613_615delGTT	c.(613-615)GTTdel	p.V205del	PON2_uc003unu.2_In_Frame_Del_p.V193del|PON2_uc010lfk.2_RNA|PON2_uc003unw.2_In_Frame_Del_p.V118del	NM_000305	NP_000296	Q15165	PON2_HUMAN	paraoxonase 2 isoform 1	205					aromatic compound catabolic process	extracellular region|plasma membrane	arylesterase activity|identical protein binding|metal ion binding				0	all_cancers(62;9.35e-11)|all_epithelial(64;3.37e-09)		STAD - Stomach adenocarcinoma(171;0.0151)			GACTGTAGTAAACAACATTTGCC	0.369													---	---	---							
SGK223	157285	broad.mit.edu	37	8	8176380	8176380	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:8176380delC	uc003wsh.3	-	5	3505	c.3505delG	c.(3505-3507)GCCfs	p.A1169fs		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	1169	Protein kinase.						ATP binding|non-membrane spanning protein tyrosine kinase activity				0						gcggcgggggcgggagccggg	0.622													---	---	---							
ASH2L	9070	broad.mit.edu	37	8	37996387	37996387	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:37996387delC	uc003xkt.3	+	15	1831	c.1773delC	c.(1771-1773)TACfs	p.Y591fs	ASH2L_uc011lbk.1_Frame_Shift_Del_p.Y452fs|ASH2L_uc003xku.3_Frame_Shift_Del_p.Y497fs|ASH2L_uc010lwa.2_Frame_Shift_Del_p.Y464fs	NM_004674	NP_004665	Q9UBL3	ASH2L_HUMAN	ash2-like isoform a	591					hemopoiesis|histone H3-K4 methylation|positive regulation of cell proliferation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription from RNA polymerase II promoter	Set1C/COMPASS complex	metal ion binding|protein binding|transcription regulatory region DNA binding			ovary(1)|lung(1)	2	Colorectal(12;0.000501)	Lung NSC(58;0.0295)|all_lung(54;0.0413)				ATCTCACTTACCGCCCTGTGA	0.453													---	---	---							
Unknown	0	broad.mit.edu	37	8	120493213	120493214	+	IGR	INS	-	CA	CA			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:120493213_120493214insCA								NOV (56535 upstream) : ENPP2 (76105 downstream)																							AAAAGACTTGTCACACTGGCGG	0.520													---	---	---							
Unknown	0	broad.mit.edu	37	8	134420816	134420816	+	IGR	DEL	A	-	-			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:134420816delA								NDRG1 (111269 upstream) : ST3GAL1 (46275 downstream)																							GTGGCGGGGGAAAGCACACAG	0.468													---	---	---							
Unknown	0	broad.mit.edu	37	8	144493005	144493006	+	IGR	INS	-	TGG	TGG			TCGA-DQ-7589-01A-11D-2229-08	TCGA-DQ-7589-10C-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	de34e28e-942b-442b-b745-7f2a0e56f3ff	8b0f925a-eac1-4d07-981f-3fd48e8006f3	g.chr8:144493005_144493006insTGG								RHPN1 (26616 upstream) : MAFA (18509 downstream)																							ggtgatggtgatggtggtggtg	0.000													---	---	---							
