Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
MST1P9	11223	broad.mit.edu	37	1	17085795	17085795	+	Silent	SNP	G	T	T	rs1057379	by1000genomes	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr1:17085795G>T	uc010ock.1	-	8	1026	c.1026C>A	c.(1024-1026)ATC>ATA	p.I342I	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TACAACGCCGGATCTGGTAGC	0.687000													3	21					0.00024832	0.000265061	1	0
MST1P9	11223	broad.mit.edu	37	1	17086003	17086003	+	Silent	SNP	G	C	C	rs3982176		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr1:17086003G>C	uc010ock.1	-	7	894	c.894C>G	c.(892-894)GGC>GGG	p.G298G	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						CCGCCCCCCCGCCCACCTCAC	0.657000													2	8					0	0	0	0
PAX7	5081	broad.mit.edu	37	1	19018401	19018401	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr1:19018401G>A	uc001bay.2	+	5	1338	c.740G>A	c.(739-741)CGC>CAC	p.R247H	PAX7_uc001baz.2_Missense_Mutation_p.R245H|PAX7_uc010oct.1_Missense_Mutation_p.R247H	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	247	Homeobox.				anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		ATATACACCCGCGAGGAGCTG	0.607000			T	FOXO1A	alveolar rhabdomyosarcoma								8	16					0	0	0	0
HSPG2	3339	broad.mit.edu	37	1	22191363	22191363	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr1:22191363C>T	uc001bfj.2	-	36	4639	c.4599G>A	c.(4597-4599)CCG>CCA	p.P1533P	HSPG2_uc009vqd.2_Silent_p.P1534P	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	1533	Laminin EGF-like 9; second part.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	TGTAGCCTGGCGGGCAGCGGC	0.687000													4	11					0	0	0	0
HSPG2	3339	broad.mit.edu	37	1	22205082	22205082	+	Missense_Mutation	SNP	C	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr1:22205082C>A	uc001bfj.2	-	19	2586	c.2546G>T	c.(2545-2547)CGC>CTC	p.R849L	HSPG2_uc009vqd.2_Missense_Mutation_p.R850L	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	849	Laminin EGF-like 3.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding	p.R849R(1)		ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CTCACAGCGGCGGCCAGTGTA	0.632000													8	31					0.000274275	0.00029113	1	0
TAL1	6886	broad.mit.edu	37	1	47689752	47689752	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr1:47689752C>T	uc001cqx.2	-	3	1042	c.465G>A	c.(463-465)CCG>CCA	p.P155P	TAL1_uc009vyq.2_5'UTR|TAL1_uc001cqy.2_Silent_p.P155P|TAL1_uc001cra.1_RNA|TAL1_uc001cqz.1_RNA	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	155					basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						GGAAGGCATCCGGCTCCCCAA	0.562000			T	TRD@|SIL	lymphoblastic leukemia/biphasic								23	66					0	0	0	0
OMA1	115209	broad.mit.edu	37	1	59002204	59002204	+	Nonsense_Mutation	SNP	G	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr1:59002204G>T	uc001cyy.2	-	3	798	c.710C>A	c.(709-711)TCG>TAG	p.S237*	DAB1_uc001cyt.1_Intron|OMA1_uc001cyx.1_Nonsense_Mutation_p.S237*|OMA1_uc009vzz.2_Nonsense_Mutation_p.S237*	NM_145243	NP_660286	Q96E52	OMA1_HUMAN	OMA1 homolog, zinc metallopeptidase precursor	237					proteolysis	integral to membrane|mitochondrial membrane	metal ion binding|metalloendopeptidase activity			large_intestine(1)	1	all_cancers(7;6.54e-05)					TTCCAGTTCCGATAAAAGTCT	0.343000													12	30					5.16669e-11	5.77453e-11	1	0
FCRL5	83416	broad.mit.edu	37	1	157509002	157509002	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr1:157509002C>T	uc001fqu.2	-	7	1434	c.1276G>A	c.(1276-1278)GCC>ACC	p.A426T	FCRL5_uc009wsm.2_Missense_Mutation_p.A426T|FCRL5_uc010phv.1_Missense_Mutation_p.A426T|FCRL5_uc010phw.1_Missense_Mutation_p.A341T|FCRL5_uc001fqv.1_Missense_Mutation_p.A426T|FCRL5_uc010phx.1_Missense_Mutation_p.A177T	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	426	Extracellular (Potential).|Ig-like C2-type 4.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				GCAGAGTTGGCCGACCTACGC	0.572000													3	41					0	0	0	0
LHX9	56956	broad.mit.edu	37	1	197889131	197889131	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr1:197889131C>T	uc001guk.1	+	2	641	c.204C>T	c.(202-204)CCC>CCT	p.P68P	LHX9_uc001gui.1_Silent_p.P59P|LHX9_uc001guj.1_Silent_p.P74P	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	68					motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						CGGAGAAGCCCGCCCTGTGCG	0.642000													30	81					0	0	0	0
NR5A2	2494	broad.mit.edu	37	1	200017721	200017721	+	Silent	SNP	G	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr1:200017721G>T	uc001gvb.2	+	5	1091	c.885G>T	c.(883-885)ACG>ACT	p.T295T	NR5A2_uc001gvc.2_Silent_p.T249T|NR5A2_uc009wzh.2_Silent_p.T255T|NR5A2_uc010pph.1_Silent_p.T223T	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	295					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					GTTACCAGACGAGCTCTCCAG	0.498000													24	52					1.10923e-09	1.22531e-09	1	0
FAM71A	149647	broad.mit.edu	37	1	212798505	212798505	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr1:212798505G>A	uc001hjk.2	+	1	690	c.286G>A	c.(286-288)GAA>AAA	p.E96K	uc010pth.1_Intron	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	96										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		CACCGGCTGCGAAGAGTATGC	0.572000													5	46					0	0	0	0
NEBL	10529	broad.mit.edu	37	10	21106596	21106596	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr10:21106596C>T	uc001iqi.2	-	21	2478	c.2081G>A	c.(2080-2082)CGG>CAG	p.R694Q	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	694	Nebulin 20.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TGCAGTTCCCCGTTGAAGTTC	0.383000													15	56					0	0	0	0
RBP3	5949	broad.mit.edu	37	10	48390514	48390514	+	Missense_Mutation	SNP	G	A	A	rs150932600	by1000genomes	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr10:48390514G>A	uc001jez.2	-	1	478	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	122	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	ACCTCATGGCGGAGGCCCCTT	0.642000													29	70					0	0	0	0
PLA2G12B	84647	broad.mit.edu	37	10	74700977	74700977	+	Missense_Mutation	SNP	G	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr10:74700977G>C	uc001jtf.1	-	3	483	c.416C>G	c.(415-417)TCG>TGG	p.S139W	PLA2G12B_uc009xqt.1_Missense_Mutation_p.S49W|PLA2G12B_uc010qjz.1_Missense_Mutation_p.S139W	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	139					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					AGAGCAGATCGAGTGGAGACA	0.498000													25	70					0	0	0	0
ADRB1	153	broad.mit.edu	37	10	115804437	115804437	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr10:115804437G>A	uc001lba.2	+	1	632	c.546G>A	c.(544-546)GTG>GTA	p.V182V		NM_000684	NP_000675	P08588	ADRB1_HUMAN	beta-1-adrenergic receptor	182	Helical; Name=4; (By similarity).				positive regulation of cAMP biosynthetic process	integral to plasma membrane	alpha-2A adrenergic receptor binding|beta1-adrenergic receptor activity|protein heterodimerization activity				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0124)|all cancers(201;0.0298)	Acebutolol(DB01193)|Alprenolol(DB00866)|Amiodarone(DB01118)|Arbutamine(DB01102)|Atenolol(DB00335)|Betaxolol(DB00195)|Bevantolol(DB01295)|Bisoprolol(DB00612)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Desipramine(DB01151)|Dobutamine(DB00841)|Dopamine(DB00988)|Epinephrine(DB00668)|Esmolol(DB00187)|Isoetharine(DB00221)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Metoprolol(DB00264)|Nadolol(DB01203)|Norepinephrine(DB00368)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Practolol(DB01297)|Propranolol(DB00571)|Risperidone(DB00734)|Timolol(DB00373)|Ziprasidone(DB00246)	TGTGCACCGTGTGGGCCATCT	0.587000													11	20					0	0	0	0
CYP2R1	120227	broad.mit.edu	37	11	14913703	14913703	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr11:14913703C>T	uc001mlr.2	-	1	49	c.49G>A	c.(49-51)GCG>ACG	p.A17T	CYP2R1_uc001mlo.2_5'Flank|CYP2R1_uc001mlp.2_5'Flank|CYP2R1_uc001mlq.2_5'Flank	NM_024514	NP_078790	Q6VVX0	CP2R1_HUMAN	cytochrome P450, family 2, subfamily R,	17					hormone biosynthetic process|vitamin D metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding|vitamin D3 25-hydroxylase activity			ovary(1)|central_nervous_system(1)	2					Cholecalciferol(DB00169)|Ergocalciferol(DB00153)	AGGAAGAGCGCGCCGCCGAGC	0.701000													10	17					0	0	0	0
ANO5	203859	broad.mit.edu	37	11	22272376	22272376	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr11:22272376C>T	uc001mqi.2	+	11	1420	c.1103C>T	c.(1102-1104)ACG>ATG	p.T368M	ANO5_uc001mqj.2_Missense_Mutation_p.T367M	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	368	Extracellular (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						CTAAATAGTACGTGTTTGGCT	0.368000													39	49					0	0	0	0
OR4C6	219432	broad.mit.edu	37	11	55433179	55433179	+	Missense_Mutation	SNP	G	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr11:55433179G>T	uc001nht.3	+	3	802	c.537G>T	c.(535-537)TTG>TTT	p.L179F	OR4C6_uc010rik.1_Missense_Mutation_p.L179F	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TATGTGATTTGTTTCAGTTGT	0.433000													50	63					3.68337e-26	4.24146e-26	1	0
TNKS1BP1	85456	broad.mit.edu	37	11	57088123	57088123	+	Missense_Mutation	SNP	A	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr11:57088123A>C	uc001njr.2	-	2	470	c.158T>G	c.(157-159)CTG>CGG	p.L53R	TNKS1BP1_uc001njs.2_Missense_Mutation_p.L53R|TNKS1BP1_uc009ymd.1_5'UTR	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	53	Arg/Glu/Lys/Pro-rich (charged).				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				TTTGGCAGGCAGGGCTGGCTT	0.647000													5	26					0	0	0	0
SHANK2	22941	broad.mit.edu	37	11	70332944	70332944	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr11:70332944C>T	uc001oqc.2	-	21	3532	c.3454G>A	c.(3454-3456)GAG>AAG	p.E1152K	SHANK2_uc010rqn.1_Missense_Mutation_p.E564K|SHANK2_uc001opz.2_Missense_Mutation_p.E557K|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	773					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			TTTTCGGGCTCCCTGGGCGTG	0.677000													21	50					0	0	0	0
NUMA1	4926	broad.mit.edu	37	11	71721849	71721849	+	Nonsense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr11:71721849G>A	uc001orl.1	-	17	4874	c.4702C>T	c.(4702-4704)CAG>TAG	p.Q1568*	NUMA1_uc001orj.2_5'Flank|NUMA1_uc009ysw.1_Nonsense_Mutation_p.Q1117*|NUMA1_uc001ork.1_Nonsense_Mutation_p.Q432*|NUMA1_uc001orm.1_Nonsense_Mutation_p.Q1554*|NUMA1_uc001orn.2_Nonsense_Mutation_p.Q1131*	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	1568	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						TTCTGCTGCTGCACCTTGCTG	0.592000			T	RARA	APL								67	221					0	0	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781352	128781352	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr11:128781352G>A	uc001qet.2	+	2	498	c.184G>A	c.(184-186)GTG>ATG	p.V62M	KCNJ5_uc009zck.2_Missense_Mutation_p.V62M|KCNJ5_uc001qew.2_Missense_Mutation_p.V62M	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	62	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	CAAGTGCAACGTGCACCACGG	0.607000													28	66					0	0	0	0
CACNA1C	775	broad.mit.edu	37	12	2566851	2566851	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr12:2566851C>T	uc009zdu.1	+	5	1049	c.736C>T	c.(736-738)CGG>TGG	p.R246W	CACNA1C_uc009zdv.1_Missense_Mutation_p.R246W|CACNA1C_uc001qkb.2_Missense_Mutation_p.R246W|CACNA1C_uc001qkc.2_Missense_Mutation_p.R246W|CACNA1C_uc001qke.2_Missense_Mutation_p.R246W|CACNA1C_uc001qkf.2_Missense_Mutation_p.R246W|CACNA1C_uc001qjz.2_Missense_Mutation_p.R246W|CACNA1C_uc001qkd.2_Missense_Mutation_p.R246W|CACNA1C_uc001qkg.2_Missense_Mutation_p.R246W|CACNA1C_uc009zdw.1_Missense_Mutation_p.R246W|CACNA1C_uc001qkh.2_Missense_Mutation_p.R246W|CACNA1C_uc001qkl.2_Missense_Mutation_p.R246W|CACNA1C_uc001qkn.2_Missense_Mutation_p.R246W|CACNA1C_uc001qko.2_Missense_Mutation_p.R246W|CACNA1C_uc001qkp.2_Missense_Mutation_p.R246W|CACNA1C_uc001qkr.2_Missense_Mutation_p.R246W|CACNA1C_uc001qku.2_Missense_Mutation_p.R246W|CACNA1C_uc001qkq.2_Missense_Mutation_p.R246W|CACNA1C_uc001qks.2_Missense_Mutation_p.R246W|CACNA1C_uc001qkt.2_Missense_Mutation_p.R246W|CACNA1C_uc001qka.1_5'UTR|CACNA1C_uc001qki.1_5'UTR|CACNA1C_uc001qkj.1_5'UTR|CACNA1C_uc001qkk.1_5'UTR|CACNA1C_uc001qkm.1_5'UTR	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	246	I.|Helical; Name=S4 of repeat I; (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GCGCCCCCTGCGGCTGGTGTC	0.567000													71	187					0	0	0	0
DYRK4	8798	broad.mit.edu	37	12	4705363	4705363	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr12:4705363G>A	uc001qmx.2	+	5	491	c.331G>A	c.(331-333)GGG>AGG	p.G111R	DYRK4_uc009zeh.1_Missense_Mutation_p.G226R|DYRK4_uc001qmy.1_Missense_Mutation_p.G111R	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	111	ATP (By similarity).|Protein kinase.					Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			GGAGACAATCGGGAAGGGGTC	0.542000													49	85					0	0	0	0
MLF2	8079	broad.mit.edu	37	12	6857986	6857986	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr12:6857986C>T	uc010sfi.1	-	8	785	c.722G>A	c.(721-723)CGA>CAA	p.R241Q	MLF2_uc001qqp.2_Missense_Mutation_p.R241Q|MLF2_uc009zey.1_Missense_Mutation_p.R241Q	NM_005439	NP_005430	Q15773	MLF2_HUMAN	myeloid leukemia factor 2	241					defense response	cytoplasm|nucleus	protein binding			large_intestine(1)	1						GCGGGACTGTCGGGAAGGGGA	0.687000													7	81					0	0	0	0
TENC1	23371	broad.mit.edu	37	12	53450797	53450797	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr12:53450797G>A	uc001sbp.2	+	11	897	c.762G>A	c.(760-762)GGG>GGA	p.G254G	uc001sbk.1_5'Flank|TENC1_uc001sbl.2_Silent_p.G130G|TENC1_uc001sbn.2_Silent_p.G264G|TENC1_uc001sbo.1_Silent_p.G254G|TENC1_uc001sbq.2_5'Flank|TENC1_uc001sbr.2_5'Flank|TENC1_uc009zmr.2_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	254	Phosphatase tensin-type.				intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						CTATCCCCAGGGCGGACCAGG	0.577000													3	16					0	0	0	0
SMUG1	23583	broad.mit.edu	37	12	54576249	54576249	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr12:54576249G>A	uc001sff.1	-	4	573	c.444C>T	c.(442-444)CTC>CTT	p.L148L	SMUG1_uc001sfa.1_5'Flank|SMUG1_uc001sfe.1_3'UTR|SMUG1_uc001sfg.1_Silent_p.L148L|SMUG1_uc009znf.1_Silent_p.L148L|SMUG1_uc001sfb.3_Intron|SMUG1_uc001sfc.3_Intron|SMUG1_uc001sfd.3_Intron	NM_014311	NP_055126	Q53HV7	SMUG1_HUMAN	single-strand-selective monofunctional	148				Missing (in Ref. 3; BAC03670).	depyrimidination	nucleolus|nucleoplasm	DNA binding|protein binding|single-strand selective uracil DNA N-glycosylase activity				0						GCTGTCCACAGAGGTTCCGGA	0.567000								BER_DNA_glycosylases					26	70					0	0	0	0
CDK4	1019	broad.mit.edu	37	12	58143283	58143283	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr12:58143283G>A	uc001spv.2	-	6	864	c.637C>T	c.(637-639)CTC>TTC	p.L213F	CDK4_uc010ssb.1_Missense_Mutation_p.L93F|CDK4_uc001spw.2_RNA|uc010ssc.1_5'Flank	NM_000075	NP_000066	P11802	CDK4_HUMAN	cyclin-dependent kinase 4	213	Protein kinase.				cell division|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|positive regulation of fibroblast proliferation|regulation of gene expression|response to drug|S phase of mitotic cell cycle	cyclin-dependent protein kinase holoenzyme complex|cytosol|membrane	ATP binding|cyclin-dependent protein kinase activity|protein binding			lung(1)|breast(1)|central_nervous_system(1)	3	all_cancers(7;4.96e-69)|Lung NSC(6;5.5e-25)|all_lung(6;3.87e-23)|all_epithelial(6;1.66e-15)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		GBM - Glioblastoma multiforme(5;4.21e-120)|all cancers(5;3.75e-83)|BRCA - Breast invasive adenocarcinoma(9;0.0294)			CCACAGAAGAGAGGCCTAAGG	0.403000			Mis			melanoma 			Hereditary_Melanoma				7	21					0	0	0	0
Unknown	0	broad.mit.edu	37	12	63359604	63359604	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr12:63359604C>T	uc001srn.1	+	1	505	c.500C>T	c.(499-501)ACG>ATG	p.T167M						SubName: Full=Putative uncharacterized protein RPL14P1;																		AAAAAGATGACGGCCGCGAGT	0.423000													4	12					0	0	0	0
NAV3	89795	broad.mit.edu	37	12	78583919	78583919	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr12:78583919G>A	uc001syp.2	+	34	6384	c.6211G>A	c.(6211-6213)GAA>AAA	p.E2071K	NAV3_uc001syo.2_Missense_Mutation_p.E2049K|NAV3_uc010sub.1_Missense_Mutation_p.E1528K|NAV3_uc009zsf.2_Missense_Mutation_p.E880K	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2071						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CAAACTTGCTGAATATGTAAT	0.373000										HNSCC(70;0.22)			10	40					0	0	0	0
HCFC2	29915	broad.mit.edu	37	12	104496888	104496888	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr12:104496888C>T	uc001tkj.3	+	15	2319	c.2216C>T	c.(2215-2217)ACA>ATA	p.T739I	HCFC2_uc009zul.2_RNA	NM_013320	NP_037452	Q9Y5Z7	HCFC2_HUMAN	host cell factor C2	739	Fibronectin type-III 3.				regulation of transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus	transcription coactivator activity			ovary(2)|central_nervous_system(1)	3						GGTCTTAAGACATCATGTATA	0.388000													6	105					0	0	0	0
FLT1	2321	broad.mit.edu	37	13	29002024	29002024	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr13:29002024C>T	uc001usb.3	-	9	1426	c.1141G>A	c.(1141-1143)GCT>ACT	p.A381T	FLT1_uc010aar.1_Missense_Mutation_p.A381T|FLT1_uc001usc.3_Missense_Mutation_p.A381T|FLT1_uc010tdp.1_Missense_Mutation_p.A381T	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	381	Ig-like C2-type 4.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	AAATAGCGAGCAGATTTCTCA	0.403000													13	54					0	0	0	0
THSD1P1	374500	broad.mit.edu	37	13	52864041	52864041	+	RNA	SNP	T	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr13:52864041T>C	uc001vgm.1	-	2		c.117A>G								Homo sapiens cDNA FLJ14630 fis, clone NT2RP2000459.												0						CAAAGGAATATAAACTTTGCT	0.299000													7	10					0	0	0	0
SLC15A1	6564	broad.mit.edu	37	13	99378415	99378415	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr13:99378415G>A	uc001vno.2	-	4	284	c.207C>T	c.(205-207)CTC>CTT	p.L69L	SLC15A1_uc001vnp.1_Silent_p.L37L	NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	69	Helical; (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	TAAGAGCTCCGAGAATTGGCG	0.453000													12	31					0	0	0	0
SLC15A1	6564	broad.mit.edu	37	13	99378417	99378417	+	Missense_Mutation	SNP	G	C	C	rs140055365		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr13:99378417G>C	uc001vno.2	-	4	282	c.205C>G	c.(205-207)CTC>GTC	p.L69V	SLC15A1_uc001vnp.1_Missense_Mutation_p.L37V	NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	69	Helical; (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	AGAGCTCCGAGAATTGGCGTC	0.453000													12	32					0	0	0	0
FAM158A	51016	broad.mit.edu	37	14	24608771	24608771	+	Missense_Mutation	SNP	C	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:24608771C>A	uc001wmi.2	-	4	491	c.328G>T	c.(328-330)GAT>TAT	p.D110Y		NM_016049	NP_057133	Q9Y3B6	F158A_HUMAN	hypothetical protein LOC51016	110											0						AGTACTGCATCAGGGAAGAAT	0.527000													8	24					0.000442599	0.000464607	1	0
MIA2	117153	broad.mit.edu	37	14	39716136	39716136	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:39716136C>T	uc001wux.2	+	4	552	c.358C>T	c.(358-360)CTT>TTT	p.L120F	MIA2_uc010amy.1_Missense_Mutation_p.L51F	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	120						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		TCTTTGTCTTCTTGGAGTAAG	0.294000													5	19					0	0	0	0
SDCCAG1	9147	broad.mit.edu	37	14	50318366	50318366	+	Missense_Mutation	SNP	G	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:50318366G>T	uc001wxc.2	-	3	214	c.146C>A	c.(145-147)ACA>AAA	p.T49K	SDCCAG1_uc010anj.1_Missense_Mutation_p.T49K|SDCCAG1_uc010tqi.1_Missense_Mutation_p.T49K|SDCCAG1_uc001wxe.2_Missense_Mutation_p.T49K|SDCCAG1_uc010anq.1_5'UTR	NM_004713	NP_004704	O60524	NEMF_HUMAN	serologically defined colon cancer antigen 1	49						cytoplasm|nucleus					0	all_epithelial(31;0.000822)|Breast(41;0.0117)	all_lung(585;1.02e-05)		OV - Ovarian serous cystadenocarcinoma(311;5.99e-34)		AAGTAAAAGTGTAGCTTTAAA	0.353000													4	59					0.000602214	0.000628685	1	0
SYNE2	23224	broad.mit.edu	37	14	64565540	64565540	+	Splice_Site	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:64565540G>A	uc001xgm.2	+	63	12611	c.12381_splice	c.e63+1	p.D4127_splice	SYNE2_uc001xgl.2_Splice_Site_p.D4127_splice|SYNE2_uc010apy.2_Splice_Site_p.D512_splice|SYNE2_uc010apx.1_Missense_Mutation_p.V520I|SYNE2_uc010apz.1_Splice_Site_p.D19_splice	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2						centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GAAGAGCGATGTAAGGGAAAT	0.388000													5	19					0	0	0	0
MAP3K9	4293	broad.mit.edu	37	14	71209185	71209185	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:71209185G>A	uc001xmm.2	-	6	1450	c.1450C>T	c.(1450-1452)CTC>TTC	p.L484F	MAP3K9_uc010ttk.1_Missense_Mutation_p.L221F|MAP3K9_uc001xmk.2_Missense_Mutation_p.L178F|MAP3K9_uc001xml.2_Missense_Mutation_p.L484F	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	484	Leucine-zipper 2.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		ATGATGTTGAGCTCCCGTTCC	0.617000													14	35					0	0	0	0
PAPLN	89932	broad.mit.edu	37	14	73720589	73720589	+	Missense_Mutation	SNP	G	T	T	rs145657526	byFrequency	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:73720589G>T	uc010ttx.1	+	11	1385	c.1222G>T	c.(1222-1224)GGG>TGG	p.G408W	PAPLN_uc001xnw.3_Missense_Mutation_p.G381W|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.G408W	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	408	TSP type-1 3.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		TGAGTGTGCCGGGCTGCCTGG	0.697000													14	39					1.05317e-09	1.17019e-09	1	0
PTGR2	145482	broad.mit.edu	37	14	74345930	74345930	+	Silent	SNP	C	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:74345930C>A	uc001xow.2	+	6	811	c.651C>A	c.(649-651)CTC>CTA	p.L217L	PTGR2_uc010tue.1_Silent_p.L217L|PTGR2_uc001xox.2_Silent_p.L217L|ZNF410_uc001xoy.1_Intron	NM_001146154	NP_001139626	Q8N8N7	PTGR2_HUMAN	prostaglandin reductase 2	217					prostaglandin metabolic process		15-oxoprostaglandin 13-oxidase activity|zinc ion binding				0						CAGAACAGCTCCGTGAATCAT	0.403000													45	112					4.06502e-11	4.57014e-11	1	0
C14orf148	122945	broad.mit.edu	37	14	77872373	77872373	+	Missense_Mutation	SNP	C	G	G			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:77872373C>G	uc001xtr.2	-	5	935	c.788G>C	c.(787-789)AGT>ACT	p.S263T		NM_001113475	NP_001106946	Q6NXP6	CN148_HUMAN	hypothetical protein LOC122945 isoform 1	263					proline biosynthetic process		binding|pyrroline-5-carboxylate reductase activity				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0277)		AAAGAGTTCACTCAGAAGCTG	0.463000													7	25					0	0	0	0
TDP1	55775	broad.mit.edu	37	14	90485752	90485752	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:90485752C>T	uc001xxy.2	+	15	1933	c.1634C>T	c.(1633-1635)CCT>CTT	p.P545L	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Missense_Mutation_p.P545L|TDP1_uc010atn.2_Missense_Mutation_p.P545L|TDP1_uc001xya.2_Missense_Mutation_p.P306L|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Missense_Mutation_p.P545L|TDP1_uc001xyd.1_Missense_Mutation_p.P160L	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	545					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		CTTTTCCTCCCTTCAGCATTT	0.512000								Repair_of_DNA-protein_crosslinks					7	15					0	0	0	0
FBLN5	10516	broad.mit.edu	37	14	92347671	92347671	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:92347671G>A	uc001xzx.3	-	9	1427	c.954C>T	c.(952-954)ATC>ATT	p.I318I	FBLN5_uc010aud.2_Silent_p.I323I|FBLN5_uc010aue.2_Silent_p.I359I	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	318	EGF-like 6; calcium-binding (Potential).				cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				CCTCACAGCGGATGGGGTCAA	0.527000													11	35					0	0	0	0
FBLN5	10516	broad.mit.edu	37	14	92357591	92357591	+	Missense_Mutation	SNP	A	G	G			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:92357591A>G	uc001xzx.3	-	6	1066	c.593T>C	c.(592-594)CTC>CCC	p.L198P	FBLN5_uc010aud.2_Missense_Mutation_p.L203P|FBLN5_uc010aue.2_Missense_Mutation_p.L239P	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	198	EGF-like 3; calcium-binding (Potential).				cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				ATCCTCATTGAGGGTAAAACC	0.478000													3	45					0	0	0	0
C14orf177	283598	broad.mit.edu	37	14	99182522	99182522	+	Translation_Start_Site	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:99182522C>T	uc001yfz.1	+	3	413	c.-6C>T	c.(-8--4)TACGA>TATGA			NM_182560	NP_872366	Q52M58	CN177_HUMAN	hypothetical protein LOC283598												0		Melanoma(154;0.128)				GCTTCCAGTACGACTGGATGC	0.572000													8	13					0	0	0	0
GPR132	29933	broad.mit.edu	37	14	105518369	105518369	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:105518369G>A	uc001yqd.2	-	4	1004	c.105C>T	c.(103-105)AAC>AAT	p.N35N	GPR132_uc001yqc.2_Translation_Start_Site|GPR132_uc001yqe.2_Silent_p.N26N	NM_013345	NP_037477	Q9UNW8	GP132_HUMAN	G protein-coupled receptor 132	35	Extracellular (Potential).				response to stress	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.0953)|Melanoma(154;0.155)|all_epithelial(191;0.219)	OV - Ovarian serous cystadenocarcinoma(23;0.00778)|all cancers(16;0.00936)|Epithelial(46;0.0227)	Epithelial(152;0.02)|all cancers(159;0.0419)|OV - Ovarian serous cystadenocarcinoma(161;0.0521)		CGAAGGACACGTTGTTGCAGG	0.657000													17	50					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	106478357	106478357	+	RNA	SNP	G	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr14:106478357G>C	uc010tyt.1	-	1857		c.35929C>G								Parts of antibodies, mostly variable regions.												0						CAGGGTCTCCGAAGGCTTCAC	0.622000													17	22					0	0	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42434752	42434752	+	Missense_Mutation	SNP	C	T	T	rs138996971		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr15:42434752C>T	uc001zoz.2	-	19	2366	c.2303G>A	c.(2302-2304)CGT>CAT	p.R768H	PLA2G4F_uc010bcq.2_Missense_Mutation_p.R65H|PLA2G4F_uc001zoy.2_Missense_Mutation_p.R400H|PLA2G4F_uc010bcr.2_Missense_Mutation_p.R519H|PLA2G4F_uc001zpa.2_Missense_Mutation_p.R519H|PLA2G4F_uc010bcs.2_Missense_Mutation_p.R555H	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	768	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		GCGGAAGGTACGGTTAACCAG	0.637000													12	50					0	0	0	0
MYO5A	4644	broad.mit.edu	37	15	52664414	52664414	+	Silent	SNP	G	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr15:52664414G>C	uc002aby.2	-	21	2968	c.2724C>G	c.(2722-2724)CTC>CTG	p.L908L	MYO5A_uc002abx.3_Silent_p.L908L|MYO5A_uc010uge.1_Silent_p.L777L	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	908	IQ 6.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		CCTCGATTTTGAGCTTCTTTA	0.537000													11	25					0	0	0	0
PARP16	54956	broad.mit.edu	37	15	65555626	65555626	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr15:65555626G>A	uc002aoo.2	-	4	806	c.552C>T	c.(550-552)ACC>ACT	p.T184T	PARP16_uc002aop.2_Silent_p.T69T|PARP16_uc002aoq.2_Silent_p.T184T	NM_017851	NP_060321	Q8N5Y8	PAR16_HUMAN	poly (ADP-ribose) polymerase family, member 16	184	PARP catalytic.					integral to membrane	NAD+ ADP-ribosyltransferase activity			lung(2)	2						TCAAGTCACTGGTGAGGTAGG	0.567000													4	18					0	0	0	0
EFTUD1	79631	broad.mit.edu	37	15	82512532	82512532	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr15:82512532C>T	uc002bgt.1	-	13	1500	c.1331G>A	c.(1330-1332)CGT>CAT	p.R444H	EFTUD1_uc002bgu.1_Missense_Mutation_p.R393H	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	444					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						TTGTCTTGCACGCTCACGTCT	0.498000													45	144					0	0	0	0
UMOD	7369	broad.mit.edu	37	16	20348717	20348717	+	Missense_Mutation	SNP	C	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr16:20348717C>A	uc002dgz.2	-	8	1765	c.1636G>T	c.(1636-1638)GGC>TGC	p.G546C	UMOD_uc002dha.2_Missense_Mutation_p.G546C|UMOD_uc002dhb.2_Missense_Mutation_p.G579C	NM_003361	NP_003352	P07911	UROM_HUMAN	uromodulin precursor	546	ZP.				cellular defense response|negative regulation of cell proliferation	anchored to membrane|apical plasma membrane|basolateral plasma membrane|cilium membrane|extrinsic to membrane|primary cilium|spindle pole	calcium ion binding			ovary(1)|skin(1)	2						GAAAATCGGCCCTGGGAGGAC	0.453000													14	29					7.93312e-07	8.6131e-07	1	0
SLC12A4	6560	broad.mit.edu	37	16	67979117	67979117	+	Silent	SNP	T	C	C	rs150617520		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr16:67979117T>C	uc002euz.2	-	23	3180	c.3039A>G	c.(3037-3039)CAA>CAG	p.Q1013Q	LCAT_uc002euy.1_5'Flank|SLC12A4_uc010ceu.2_Silent_p.Q1007Q|SLC12A4_uc010vkh.1_Silent_p.Q982Q|SLC12A4_uc010vki.1_Silent_p.Q1007Q|SLC12A4_uc010vkj.1_Silent_p.Q1015Q|SLC12A4_uc002eva.2_Silent_p.Q1013Q	NM_005072	NP_005063	Q9UP95	S12A4_HUMAN	solute carrier family 12, member 4 isoform a	1013	Cytoplasmic (Potential).				cell volume homeostasis|potassium ion transport|sodium ion transport	integral to plasma membrane|membrane fraction	potassium:chloride symporter activity			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	GCACATTGGATTGGTCCCTAC	0.592000													14	49					0	0	0	0
ZNF23	7571	broad.mit.edu	37	16	71482652	71482652	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr16:71482652C>T	uc002faf.2	-	6	2090	c.1276G>A	c.(1276-1278)GGG>AGG	p.G426R	ZNF23_uc002fad.2_Missense_Mutation_p.G368R|ZNF23_uc002fae.2_Missense_Mutation_p.G368R|ZNF23_uc010vmf.1_Missense_Mutation_p.G368R|ZNF23_uc002fag.2_Missense_Mutation_p.G368R|ZNF23_uc002fah.2_Missense_Mutation_p.G426R|ZNF23_uc002fai.2_Missense_Mutation_p.G465R	NM_145911	NP_666016	P17027	ZNF23_HUMAN	zinc finger protein 23	426	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(137;0.00768)		BRCA - Breast invasive adenocarcinoma(221;0.0686)		AAGGCTTTCCCGCATTCATTA	0.463000													8	30					0	0	0	0
SLC16A13	201232	broad.mit.edu	37	17	6942181	6942181	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr17:6942181G>A	uc002geh.2	+	3	1362	c.1054G>A	c.(1054-1056)GGG>AGG	p.G352R		NM_201566	NP_963860	Q7RTY0	MOT13_HUMAN	monocarboxylate transporter 13	352	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(1)|skin(1)	2						AGAGAGCATCGGGGGGCTGCT	0.463000													29	97					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	T	T	rs11540652		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr17:7577538C>T	uc002gim.2	-	7	937	c.743G>A	c.(742-744)CGG>CAG	p.R248Q	TP53_uc002gig.1_Missense_Mutation_p.R248Q|TP53_uc002gih.2_Missense_Mutation_p.R248Q|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R116Q|TP53_uc010cng.1_Missense_Mutation_p.R116Q|TP53_uc002gii.1_Missense_Mutation_p.R116Q|TP53_uc010cnh.1_Missense_Mutation_p.R248Q|TP53_uc010cni.1_Missense_Mutation_p.R248Q|TP53_uc002gij.2_Missense_Mutation_p.R248Q|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R155Q|TP53_uc002gio.2_Missense_Mutation_p.R116Q	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	248	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		R -> W (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> L (in sporadic cancers; somatic mutation).|NR -> KW (in sporadic cancers; somatic mutation).|R -> C (in a sporadic cancer; somatic mutation).|NR -> IP (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R248Q(523)|p.R248W(443)|p.R248L(63)|p.R248P(12)|p.R248G(11)|p.R248R(10)|p.0?(7)|p.R155Q(4)|p.N247_R248delNR(2)|p.N247_R248>KW(2)|p.M246_P250delMNRRP(2)|p.R248fs*97(2)|p.R248_P250delRRP(1)|p.N247_R249delNRR(1)|p.N247_P250delNRRP(1)|p.R249fs*96(1)|p.R248C(1)|p.G245fs*14(1)|p.N247_R248>IP(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GATGGGCCTCCGGTTCATGCC	0.572000	R248Q(KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(HS683_CENTRAL_NERVOUS_SYSTEM)|R248Q(NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(HCC1143_BREAST)|R248Q(BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SKUT1_SOFT_TISSUE)|R248Q(HSC4_UPPER_AERODIGESTIVE_TRACT)|R248Q(HEC1A_ENDOMETRIUM)|R248Q(SF295_CENTRAL_NERVOUS_SYSTEM)|R248Q(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NCIN87_STOMACH)|R248Q(P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(RT112_URINARY_TRACT)|R248Q(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(PANC0203_PANCREAS)|R248Q(EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NIHOVCAR3_OVARY)|R248Q(CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SW1463_LARGE_INTESTINE)|R248Q(HCC70_BREAST)|R248Q(KYSE150_OESOPHAGUS)|R248Q(NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NCIH211_LUNG)|R248Q(KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(PC14_LUNG)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			6	35					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7577548	7577548	+	Missense_Mutation	SNP	C	T	T	rs28934575		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr17:7577548C>T	uc002gim.2	-	7	927	c.733G>A	c.(733-735)GGC>AGC	p.G245S	TP53_uc002gig.1_Missense_Mutation_p.G245S|TP53_uc002gih.2_Missense_Mutation_p.G245S|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.G113S|TP53_uc010cng.1_Missense_Mutation_p.G113S|TP53_uc002gii.1_Missense_Mutation_p.G113S|TP53_uc010cnh.1_Missense_Mutation_p.G245S|TP53_uc010cni.1_Missense_Mutation_p.G245S|TP53_uc002gij.2_Missense_Mutation_p.G245S|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.G152S|TP53_uc002gio.2_Missense_Mutation_p.G113S	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	245	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		G -> N (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> A (in sporadic cancers; somatic mutation).|G -> V (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> F (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> R (in sporadic cancers; somatic mutation).|G -> E (in a sporadic cancer; somatic mutation).|G -> D (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> H (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|G -> L (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.G245S(274)|p.G245D(93)|p.G245V(50)|p.G245C(47)|p.G245R(10)|p.G245A(8)|p.0?(7)|p.G245G(3)|p.G245fs*2(3)|p.G245N(2)|p.G245H(1)|p.G245L(1)|p.G244fs*17(1)|p.G245F(1)|p.G245E(1)|p.C242_M246>L(1)|p.C238_M246delCNSSCMGGM(1)|p.S241_G245delSCMGG(1)|p.C242fs*98(1)|p.G245fs*22(1)|p.M243fs*18(1)|p.G245del(1)|p.G245fs*14(1)|p.G245fs*17(1)|p.G245fs*16(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CGGTTCATGCCGCCCATGCAG	0.577000	G245S(SKLMS1_SOFT_TISSUE)|G245S(LS1034_LARGE_INTESTINE)|G245S(NUGC2_STOMACH)|G245S(PANC0403_PANCREAS)|G245S(SKMEL2_SKIN)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			18	28					0	0	0	0
CHD3	1107	broad.mit.edu	37	17	7800529	7800529	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr17:7800529G>A	uc002gje.2	+	11	1986	c.1836G>A	c.(1834-1836)CCG>CCA	p.P612P	CHD3_uc002gjd.2_Silent_p.P671P|CHD3_uc002gjf.2_Silent_p.P612P|CHD3_uc002gjg.1_Silent_p.P440P	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	612					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				TGAAAGACCCGCACTATGCTG	0.542000													17	45					0	0	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274415	39274415	+	Silent	SNP	C	T	T	rs425487	by1000genomes	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr17:39274415C>T	uc002hvz.2	-	1	192	c.153G>A	c.(151-153)AGG>AGA	p.R51R		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	51	6.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].		Missing (in allele KAP4.14).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGCACTGGGGCCTGCAGCAGC	0.667000													5	50					0	0	0	0
WNK4	65266	broad.mit.edu	37	17	40940718	40940718	+	Missense_Mutation	SNP	G	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr17:40940718G>C	uc002ibj.2	+	11	2081	c.2060G>C	c.(2059-2061)AGA>ACA	p.R687T	WNK4_uc010wgx.1_Missense_Mutation_p.R351T|WNK4_uc002ibk.1_Missense_Mutation_p.R459T|WNK4_uc010wgy.1_Missense_Mutation_p.R31T	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	687					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		CAGAATGACAGAGTGGTTGAG	0.532000													13	37					0	0	0	0
TBX21	30009	broad.mit.edu	37	17	45822604	45822604	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr17:45822604G>A	uc002ilv.1	+	6	1691	c.1480G>A	c.(1480-1482)GAA>AAA	p.E494K		NM_013351	NP_037483	Q9UL17	TBX21_HUMAN	T-box 21	494					lymphocyte migration|multicellular organismal development|positive regulation of transcription, DNA-dependent|response to virus	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0						AGGACTGGGCGAAGGAGACTC	0.617000													11	31					0	0	0	0
ICAM2	3384	broad.mit.edu	37	17	62080239	62080239	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr17:62080239C>T	uc002jdu.3	-	4	928	c.696G>A	c.(694-696)TCG>TCA	p.S232S	C17orf72_uc002jdt.3_3'UTR|C17orf72_uc010wpu.1_3'UTR|C17orf72_uc010wpv.1_3'UTR|C17orf72_uc010wpw.1_3'UTR|ICAM2_uc002jdw.3_Silent_p.S232S|ICAM2_uc010ded.2_Silent_p.S232S|ICAM2_uc002jdx.3_Silent_p.S232S|ICAM2_uc002jdv.3_Silent_p.S232S	NM_000873	NP_000864	P13598	ICAM2_HUMAN	intercellular adhesion molecule 2 precursor	232	Helical; (Potential).				cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			ovary(1)	1						ACAGCAACACCGACACCACCG	0.612000													3	16					0	0	0	0
USH1G	124590	broad.mit.edu	37	17	72915913	72915913	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr17:72915913C>T	uc002jme.1	-	2	1201	c.1018G>A	c.(1018-1020)GGA>AGA	p.G340R	USH1G_uc010wro.1_Missense_Mutation_p.G237R	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	340					equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					CGCGGCGCTCCCACCCCATCC	0.687000													18	82					0	0	0	0
SLC26A11	284129	broad.mit.edu	37	17	78211342	78211342	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr17:78211342G>A	uc002jyb.1	+	9	1203	c.934G>A	c.(934-936)GTG>ATG	p.V312M	SLC26A11_uc002jyc.1_Missense_Mutation_p.V312M|SLC26A11_uc002jyd.1_Missense_Mutation_p.V312M|SLC26A11_uc010dhv.1_Missense_Mutation_p.V312M	NM_173626	NP_775897	Q86WA9	S2611_HUMAN	solute carrier family 26, member 11	312	Helical; (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|plasma membrane	anion:anion antiporter activity|secondary active sulfate transmembrane transporter activity				0	all_neural(118;0.0538)		OV - Ovarian serous cystadenocarcinoma(97;0.0344)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CGGGCTGGCCGTGGTGCCCCT	0.642000													7	11					0	0	0	0
DOT1L	84444	broad.mit.edu	37	19	2210646	2210646	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:2210646G>A	uc002lvb.3	+	14	1179	c.1143G>A	c.(1141-1143)GCG>GCA	p.A381A	DOT1L_uc002lvc.1_5'Flank	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	381						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGAGAAGGCGGGAGCAGCCA	0.647000													19	76					0	0	0	0
DUS3L	56931	broad.mit.edu	37	19	5789493	5789493	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:5789493C>T	uc002mdc.2	-	3	722	c.625G>A	c.(625-627)GGC>AGC	p.G209S	DUS3L_uc002mdd.2_Intron|DUS3L_uc010duk.2_5'UTR|DUS3L_uc010xiw.1_RNA	NM_020175	NP_064560	Q96G46	DUS3L_HUMAN	dihydrouridine synthase 3-like isoform 1	209					tRNA processing		flavin adenine dinucleotide binding|nucleic acid binding|tRNA dihydrouridine synthase activity|zinc ion binding				0						TTGTCCAGGCCGTTGCGGATG	0.726000													5	9					0	0	0	0
C3	718	broad.mit.edu	37	19	6685055	6685055	+	Missense_Mutation	SNP	A	G	G			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:6685055A>G	uc002mfm.2	-	30	3975	c.3913T>C	c.(3913-3915)TCC>CCC	p.S1305P	C3_uc002mfl.2_Missense_Mutation_p.S41P	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1305					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GTGATCTTGGAGCTGCGGCTG	0.582000													3	52					0	0	0	0
RDH8	50700	broad.mit.edu	37	19	10124179	10124179	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:10124179C>T	uc002mmr.2	+	1	255	c.6C>T	c.(4-6)GCC>GCT	p.A2A		NM_015725	NP_056540	Q9NYR8	RDH8_HUMAN	retinol dehydrogenase 8 (all-trans)	2					estrogen biosynthetic process|response to stimulus|visual perception	cytoplasm|integral to plasma membrane	binding|estradiol 17-beta-dehydrogenase activity|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(3)|pancreas(1)	4			Epithelial(33;4.24e-05)		Vitamin A(DB00162)	TCAACATGGCCGCTGCACCCC	0.607000													14	28					0	0	0	0
OR7A17	26333	broad.mit.edu	37	19	14992152	14992152	+	Missense_Mutation	SNP	C	G	G			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:14992152C>G	uc010xob.1	-	1	16	c.16G>C	c.(16-18)GAC>CAC	p.D6H		NM_030901	NP_112163	O14581	OR7AH_HUMAN	olfactory receptor, family 7, subfamily A,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					ATCCCTGTGTCATTCTCTGGT	0.279000													9	13					0	0	0	0
LSR	51599	broad.mit.edu	37	19	35757379	35757379	+	Missense_Mutation	SNP	C	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:35757379C>A	uc002nyl.2	+	6	1263	c.1040C>A	c.(1039-1041)CCT>CAT	p.P347H	LSR_uc002nym.2_Missense_Mutation_p.P328H|LSR_uc002nyn.2_Missense_Mutation_p.P279H|LSR_uc002nyo.2_Missense_Mutation_p.P328H|LSR_uc010xsr.1_Missense_Mutation_p.P239H|LSR_uc002nyp.2_Missense_Mutation_p.P310H|USF2_uc010xss.1_5'Flank|USF2_uc002nyq.1_5'Flank|USF2_uc002nyr.1_5'Flank|USF2_uc002nys.1_5'Flank|USF2_uc002nyt.1_5'Flank|USF2_uc002nyu.1_5'Flank	NM_205834	NP_991403	Q86X29	LSR_HUMAN	lipolysis stimulated lipoprotein receptor	347	Cytoplasmic (Potential).				embryo development|liver development	chylomicron|integral to membrane|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle	receptor activity				0	all_lung(56;3.91e-09)|Lung NSC(56;5.64e-09)|Esophageal squamous(110;0.162)		Epithelial(14;1.33e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.29e-18)|all cancers(14;7.11e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			CCCATGGGCCCTGCCTACAAC	0.627000													19	24					2.4624e-09	2.70437e-09	1	0
FBXO27	126433	broad.mit.edu	37	19	39521762	39521762	+	Nonsense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:39521762C>T	uc002okh.2	-	4	561	c.479G>A	c.(478-480)TGG>TAG	p.W160*		NM_178820	NP_849142	Q8NI29	FBX27_HUMAN	F-box protein 27	160	FBA.				protein catabolic process	SCF ubiquitin ligase complex	glycoprotein binding			ovary(1)	1	all_cancers(60;3.79e-07)|all_lung(34;1.26e-07)|Lung NSC(34;1.46e-07)|all_epithelial(25;4.69e-07)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			CTTGCAACACCAGCTGGGAAT	0.537000													28	41					0	0	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39905661	39905661	+	Nonsense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:39905661C>T	uc010xuz.1	+	3	464	c.139C>T	c.(139-141)CGA>TGA	p.R47*	PLEKHG2_uc010xuy.1_Intron|PLEKHG2_uc002olj.2_Nonsense_Mutation_p.R47*|PLEKHG2_uc010xva.1_5'Flank	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	47					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GGCCTCCCCCCGAGGTTCTGG	0.652000													4	3					0	0	0	0
CADM4	199731	broad.mit.edu	37	19	44131798	44131798	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:44131798C>T	uc002oxc.1	-	2	258	c.209G>A	c.(208-210)CGT>CAT	p.R70H		NM_145296	NP_660339	Q8NFZ8	CADM4_HUMAN	cell adhesion molecule 4 precursor	70	Ig-like V-type.|Extracellular (Potential).				cell adhesion	integral to membrane					0		Prostate(69;0.0199)				GCACTCACCACGGGTGCCATT	0.378000													21	68					0	0	0	0
HIF3A	64344	broad.mit.edu	37	19	46842835	46842835	+	Missense_Mutation	SNP	G	A	A	rs143456536		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:46842835G>A	uc002peh.2	+	15	1995	c.1966G>A	c.(1966-1968)GGG>AGG	p.G656R	HIF3A_uc002pek.2_Missense_Mutation_p.G600R|HIF3A_uc010xxy.1_Missense_Mutation_p.G587R|HIF3A_uc002pel.2_Missense_Mutation_p.G654R	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	656					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		TACCCAGCCCGGGGGCCCCTT	0.577000													15	74					0	0	0	0
GRLF1	2909	broad.mit.edu	37	19	47423751	47423751	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:47423751G>A	uc010ekv.2	+	1	1819	c.1819G>A	c.(1819-1821)GGC>AGC	p.G607S		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	607					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		GGGCAAAGACGGCCTTGCCCG	0.433000													62	97					0	0	0	0
C5AR1	728	broad.mit.edu	37	19	47823721	47823721	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:47823721G>A	uc002pgj.1	+	2	736	c.687G>A	c.(685-687)ACG>ACA	p.T229T		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	229	Cytoplasmic (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		TGCTCCGGACGTGGAGCCGCA	0.617000													37	83					0	0	0	0
CCDC114	93233	broad.mit.edu	37	19	48806034	48806034	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:48806034C>T	uc002pir.2	-	10	1729	c.1046G>A	c.(1045-1047)CGC>CAC	p.R349H	CCDC114_uc002piq.2_Missense_Mutation_p.R158H|CCDC114_uc002pio.2_Missense_Mutation_p.R386H|CCDC114_uc002pis.1_Missense_Mutation_p.R29H|CCDC114_uc002pit.1_Missense_Mutation_p.R386H	NM_144577	NP_653178	Q96M63	CC114_HUMAN	coiled-coil domain containing 114 isoform 2	349	Potential.									ovary(1)	1		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000162)|Epithelial(262;0.0134)|GBM - Glioblastoma multiforme(486;0.0143)		CTTGTCCATGCGCTGCTGCAA	0.632000													29	61					0	0	0	0
NTF4	4909	broad.mit.edu	37	19	49564963	49564963	+	Missense_Mutation	SNP	C	G	G			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:49564963C>G	uc002pmf.3	-	2	433	c.292G>C	c.(292-294)GAT>CAT	p.D98H	CGB7_uc010yah.1_Intron	NM_006179	NP_006170	P34130	NTF4_HUMAN	neurotrophin 5 preproprotein	98					adult locomotory behavior|epidermis development|ganglion mother cell fate determination|long-term memory|sensory organ boundary specification	endoplasmic reticulum lumen|extracellular region	growth factor activity				0		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_epithelial(76;3.83e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000371)|OV - Ovarian serous cystadenocarcinoma(262;0.000503)|GBM - Glioblastoma multiforme(486;0.00518)|Epithelial(262;0.0427)		CTGACTGCATCGCACACAGCC	0.697000													6	15					0	0	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50461907	50461907	+	Silent	SNP	G	A	A	rs139230914		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:50461907G>A	uc010ybh.1	-	7	1447	c.1356C>T	c.(1354-1356)TCC>TCT	p.S452S	SIGLEC11_uc010ybi.1_Silent_p.S452S	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	452	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		CACAGTGCACGGAGAGGCTGA	0.652000													21	89					0	0	0	0
NLRP11	204801	broad.mit.edu	37	19	56321143	56321143	+	Missense_Mutation	SNP	C	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:56321143C>A	uc010ygf.1	-	5	1544	c.833G>T	c.(832-834)AGG>ATG	p.R278M	NLRP11_uc002qlz.2_Missense_Mutation_p.R179M|NLRP11_uc002qmb.2_Missense_Mutation_p.R179M|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	278	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		ACGTGTGGGCCTTGAGGAGAT	0.463000													13	43					0.000151284	0.000162396	1	0
ZNF749	388567	broad.mit.edu	37	19	57955756	57955756	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr19:57955756G>A	uc002qoq.2	+	3	1494	c.1240G>A	c.(1240-1242)GAA>AAA	p.E414K	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	414	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		TAAGTGTAGCGAATGTGGGAA	0.428000													26	58					0	0	0	0
SNTG2	54221	broad.mit.edu	37	2	1271203	1271203	+	Missense_Mutation	SNP	G	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:1271203G>C	uc002qwq.2	+	14	1272	c.1144G>C	c.(1144-1146)GAG>CAG	p.E382Q	SNTG2_uc010ewi.2_Missense_Mutation_p.E255Q	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	382	PH.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		TTTTGACTTTGAGGACCAGAG	0.522000													9	12					0	0	0	0
ADCY3	109	broad.mit.edu	37	2	25054533	25054533	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:25054533G>A	uc002rfs.3	-	11	2252	c.2053C>T	c.(2053-2055)CGG>TGG	p.R685W	ADCY3_uc002rfr.3_Missense_Mutation_p.R318W|ADCY3_uc010ykm.1_Missense_Mutation_p.R685W	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	685					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					CCTCTTACCCGGGGAAAGATG	0.498000													5	24					0	0	0	0
TTC27	55622	broad.mit.edu	37	2	33036234	33036234	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:33036234G>A	uc002rom.2	+	17	2373	c.2142G>A	c.(2140-2142)CTG>CTA	p.L714L	TTC27_uc010ymx.1_Silent_p.L664L|TTC27_uc002ron.2_RNA	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	714	HAT 3.						protein binding			central_nervous_system(1)	1						TCTGGAGGCTGTATGCCCACG	0.453000													8	32					0	0	0	0
ZNF638	27332	broad.mit.edu	37	2	71591185	71591185	+	Missense_Mutation	SNP	G	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:71591185G>T	uc002shx.2	+	5	1839	c.1520G>T	c.(1519-1521)CGG>CTG	p.R507L	ZNF638_uc010fec.2_Missense_Mutation_p.R613L|ZNF638_uc010yqw.1_Missense_Mutation_p.R86L|ZNF638_uc002shw.2_Missense_Mutation_p.R507L|ZNF638_uc002shy.2_Missense_Mutation_p.R507L|ZNF638_uc002shz.2_Missense_Mutation_p.R507L|ZNF638_uc002sia.2_Missense_Mutation_p.R507L|ZNF638_uc002sib.1_Missense_Mutation_p.R507L|ZNF638_uc010fed.2_5'Flank	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	507	Arg-rich.				RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						AGATTCCGTCGGTCTCGAAGC	0.453000													24	45					4.26978e-12	4.82891e-12	1	0
DYSF	8291	broad.mit.edu	37	2	71755438	71755438	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:71755438C>T	uc002sie.2	+	13	1567	c.1191C>T	c.(1189-1191)GCC>GCT	p.A397A	DYSF_uc010feg.2_Silent_p.A428A|DYSF_uc010feh.2_Silent_p.A397A|DYSF_uc002sig.3_Silent_p.A397A|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.A397A|DYSF_uc010fef.2_Silent_p.A428A|DYSF_uc010fei.2_Silent_p.A428A|DYSF_uc010fek.2_Silent_p.A429A|DYSF_uc010fej.2_Silent_p.A398A|DYSF_uc010fel.2_Silent_p.A398A|DYSF_uc010feo.2_Silent_p.A429A|DYSF_uc010fem.2_Silent_p.A398A|DYSF_uc010fen.2_Silent_p.A429A|DYSF_uc002sif.2_Silent_p.A398A	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	397	Cytoplasmic (Potential).|C2 3.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TGGACGATGCCGTGATGGACA	0.542000													7	16					0	0	0	0
CNGA3	1261	broad.mit.edu	37	2	99013652	99013652	+	Silent	SNP	G	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:99013652G>T	uc002syt.2	+	8	2436	c.2019G>T	c.(2017-2019)GGG>GGT	p.G673G	CNGA3_uc002syu.2_Silent_p.G655G|CNGA3_uc010fij.2_Silent_p.G677G	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	673					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						AGGGTGGTGGGGACAAGCCCC	0.557000													9	42					1.58986e-06	1.71633e-06	1	0
TMEM37	140738	broad.mit.edu	37	2	120194723	120194723	+	Missense_Mutation	SNP	G	A	A	rs148211959	byFrequency	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:120194723G>A	uc002tly.2	+	2	314	c.280G>A	c.(280-282)GTG>ATG	p.V94M		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	94						integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						GGTACGCAGCGTGGGCGCCTT	0.637000													21	68					0	0	0	0
MYO7B	4648	broad.mit.edu	37	2	128384586	128384586	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:128384586G>A	uc002top.2	+	31	4227	c.4174G>A	c.(4174-4176)GTG>ATG	p.V1392M	MYO7B_uc002toq.1_Missense_Mutation_p.V245M|MYO7B_uc002tor.1_Missense_Mutation_p.V245M	NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1392	FERM 1.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		ACCACTGGCCGTGCGAGAGCA	0.612000													7	7					0	0	0	0
LCT	3938	broad.mit.edu	37	2	136575003	136575003	+	Missense_Mutation	SNP	T	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:136575003T>C	uc002tuu.1	-	6	1626	c.1615A>G	c.(1615-1617)ACC>GCC	p.T539A		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	539	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TCATGGAAGGTCACCCACAGC	0.587000													12	36					0	0	0	0
PABPC1P2	728773	broad.mit.edu	37	2	147346155	147346155	+	Missense_Mutation	SNP	G	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:147346155G>T	uc002twf.3	+	1	1531	c.615G>T	c.(613-615)AAG>AAT	p.K205N		NR_026904				RecName: Full=Putative protein PABPC1-like; AltName: Full=Polyadenylate-binding protein pseudogene 2;												0						ACATGCAGAAGATGGCAAGTG	0.502000													6	11					0.00198382	0.0020597	1	0
GALNT3	2591	broad.mit.edu	37	2	166627124	166627124	+	Missense_Mutation	SNP	G	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:166627124G>T	uc010fph.1	-	2	474	c.87C>A	c.(85-87)TTC>TTA	p.F29L	GALNT3_uc010fpi.1_Missense_Mutation_p.F29L|GALNT3_uc002udi.2_Missense_Mutation_p.F29L	NM_004482	NP_004473	Q14435	GALT3_HUMAN	polypeptide N-acetylgalactosaminyltransferase 3	29	Helical; Signal-anchor for type II membrane protein; (Potential).				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	Golgi cisterna membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	calcium ion binding|manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(2)|ovary(1)	3						CTATTATAAAGAAAAAAATTA	0.308000													10	22					0.000442599	0.000464607	1	0
RAPH1	65059	broad.mit.edu	37	2	204305768	204305768	+	Silent	SNP	A	G	G			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:204305768A>G	uc002vad.2	-	14	2370	c.2145T>C	c.(2143-2145)CCT>CCC	p.P715P		NM_213589	NP_998754	Q70E73	RAPH1_HUMAN	Ras association and pleckstrin homology domains	715					cell-matrix adhesion|signal transduction	cytoplasm|cytoskeleton|filopodium|lamellipodium|nucleus|plasma membrane				ovary(3)|breast(3)|central_nervous_system(2)|lung(1)|skin(1)	10						ggggtggaggagggggagggg	0.488000													5	21					0	0	0	0
SLC19A3	80704	broad.mit.edu	37	2	228563678	228563678	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:228563678G>A	uc002vpi.2	-	3	842	c.753C>T	c.(751-753)AGC>AGT	p.S251S	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Silent_p.S247S	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	251	Cytoplasmic (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	TTGGTTTCAGGCTGTTCAGCT	0.473000													22	40					0	0	0	0
HES6	55502	broad.mit.edu	37	2	239147619	239147619	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr2:239147619G>A	uc002vxz.2	-	4	659	c.524C>T	c.(523-525)CCG>CTG	p.P175L	HES6_uc002vya.2_Missense_Mutation_p.P173L|HES6_uc002vyb.2_3'UTR	NM_018645	NP_061115	Q96HZ4	HES6_HUMAN	hairy and enhancer of split 6 isoform a	175					cell differentiation	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1		Breast(86;0.000523)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.23e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.29e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.19e-08)|BRCA - Breast invasive adenocarcinoma(100;5.98e-05)|Lung(119;0.0086)|LUSC - Lung squamous cell carcinoma(224;0.0148)		CCCAGGACCCGGGGGGCTGGG	0.726000													5	13					0	0	0	0
C20orf103	24141	broad.mit.edu	37	20	9510395	9510395	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr20:9510395C>T	uc002wni.1	+	6	1000	c.771C>T	c.(769-771)CAC>CAT	p.H257H	C20orf103_uc010zrc.1_Silent_p.H213H	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	257	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			CGATTTACCACGTCCACCACA	0.552000													12	41					0	0	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18123437	18123437	+	Missense_Mutation	SNP	C	G	G			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr20:18123437C>G	uc002wqj.2	+	2	755	c.133C>G	c.(133-135)CAG>GAG	p.Q45E	CSRP2BP_uc002wqk.2_5'Flank	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	45					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						ATCCGAGGATCAGGCATCAGT	0.547000													11	103					0	0	0	0
C20orf114	92747	broad.mit.edu	37	20	31876618	31876618	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr20:31876618C>T	uc002wyw.1	+	3	348	c.187C>T	c.(187-189)CGG>TGG	p.R63W	C20orf114_uc010gej.1_Missense_Mutation_p.R63W	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	63						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						CAGTGCCATGCGGGAAAAGCC	0.627000													10	41					0	0	0	0
MATN4	8785	broad.mit.edu	37	20	43930045	43930045	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr20:43930045G>A	uc002xnn.2	-	4	869	c.682C>T	c.(682-684)CAC>TAC	p.H228Y	MATN4_uc002xno.2_Intron|MATN4_uc002xnp.2_Intron|MATN4_uc010zwr.1_Missense_Mutation_p.H176Y|MATN4_uc002xnr.1_Missense_Mutation_p.H228Y	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	269	EGF-like 2.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				ACGCAGTGGTGCTCACATCCA	0.557000													22	32					0	0	0	0
PARD6B	84612	broad.mit.edu	37	20	49354499	49354499	+	Missense_Mutation	SNP	G	A	A	rs142377445		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr20:49354499G>A	uc002xvo.2	+	2	415	c.172G>A	c.(172-174)GTT>ATT	p.V58I		NM_032521	NP_115910	Q9BYG5	PAR6B_HUMAN	PAR-6 beta	58	OPR.				axonogenesis|cell cycle|cell division|establishment or maintenance of cell polarity|protein complex assembly|regulation of cell migration|tight junction assembly	cytosol|tight junction	protein binding			kidney(1)	1						CAATGTTGACGTTTTGGTAGG	0.383000													35	37					0	0	0	0
GNAS	2778	broad.mit.edu	37	20	57415178	57415178	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr20:57415178G>A	uc002xzt.2	+	1	384	c.17G>A	c.(16-18)CGG>CAG	p.R6Q	GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank	NM_016592	NP_057676	P63092	GNAS2_HUMAN	GNAS complex locus NESP55	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			CGGAGGTCCCGGGCTCAGCAG	0.667000			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			30	30					0	0	0	0
GNAS	2778	broad.mit.edu	37	20	57430002	57430002	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr20:57430002G>A	uc002xzw.2	+	1	1967	c.1682G>A	c.(1681-1683)CGC>CAC	p.R561H	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			AGCCGCGGCCGCCGCGTGTAC	0.687000			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			5	4					0	0	0	0
BIRC7	79444	broad.mit.edu	37	20	61870794	61870794	+	Missense_Mutation	SNP	G	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr20:61870794G>T	uc002yej.2	+	6	907	c.734G>T	c.(733-735)CGG>CTG	p.R245L	BIRC7_uc010gkc.1_3'UTR|BIRC7_uc002yei.2_Missense_Mutation_p.R227L	NM_139317	NP_647478	Q96CA5	BIRC7_HUMAN	livin inhibitor of apoptosis isoform alpha	245					activation of JUN kinase activity|anti-apoptosis|DNA fragmentation involved in apoptotic nuclear change	cytoplasm|nucleus	enzyme binding|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3	all_cancers(38;2.72e-09)					CAGCTGCGGCGGCTGCAGGAG	0.692000													27	31					4.39465e-27	5.09136e-27	1	0
DSCAM	1826	broad.mit.edu	37	21	41561106	41561106	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr21:41561106C>T	uc002yyq.1	-	12	2868	c.2416G>A	c.(2416-2418)GAG>AAG	p.E806K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	806	Ig-like C2-type 9.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CAGCTCATCTCCTTTTTCTGC	0.507000													23	45					0	0	0	0
NF2	4771	broad.mit.edu	37	22	30061031	30061031	+	Nonsense_Mutation	SNP	C	G	G			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr22:30061031C>G	uc003age.3	+	9	1306	c.863C>G	c.(862-864)TCA>TGA	p.S288*	NF2_uc003afy.3_Nonsense_Mutation_p.S288*|NF2_uc003afz.3_Nonsense_Mutation_p.S205*|NF2_uc003agf.3_Nonsense_Mutation_p.S288*|NF2_uc003agb.3_Nonsense_Mutation_p.S211*|NF2_uc003agc.3_Nonsense_Mutation_p.S250*|NF2_uc003agd.3_RNA|NF2_uc003agg.3_Nonsense_Mutation_p.S288*|NF2_uc003aga.3_Nonsense_Mutation_p.S246*|NF2_uc003agh.3_Nonsense_Mutation_p.S247*|NF2_uc003agi.3_Nonsense_Mutation_p.S205*|NF2_uc003agj.3_Intron|NF2_uc003agk.3_Nonsense_Mutation_p.S250*|NF2_uc010gvp.2_5'UTR	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1	288	FERM.				actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding	p.L127_D382del(1)|p.F271_L295del(1)|p.?(1)		meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						TTTAACTCCTCAAAGCTTCGT	0.353000			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				2	9					0	0	0	0
MYH9	4627	broad.mit.edu	37	22	36708123	36708123	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr22:36708123C>T	uc003apg.2	-	14	1930	c.1699G>A	c.(1699-1701)GAT>AAT	p.D567N	MYH9_uc003aph.1_Missense_Mutation_p.D431N	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	567	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						ATGCAGAAATCAGCTTTGTCC	0.582000			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				27	28					0	0	0	0
ITGA9	3680	broad.mit.edu	37	3	37523001	37523001	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr3:37523001C>T	uc003chd.2	+	4	500	c.447C>T	c.(445-447)ATC>ATT	p.I149I	ITGA9_uc003chc.2_Silent_p.I149I	NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	149	Extracellular (Potential).|FG-GAP 2.				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		GGAAGAACATCTACTATGAAG	0.532000													11	70					0	0	0	0
FLNB	2317	broad.mit.edu	37	3	58145386	58145386	+	Missense_Mutation	SNP	G	A	A	rs139262140		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr3:58145386G>A	uc003djj.2	+	42	7159	c.6994G>A	c.(6994-6996)GAG>AAG	p.E2332K	FLNB_uc010hne.2_Missense_Mutation_p.E2363K|FLNB_uc003djk.2_Missense_Mutation_p.E2321K|FLNB_uc010hnf.2_Missense_Mutation_p.E2308K|FLNB_uc003djl.2_Missense_Mutation_p.E2152K|FLNB_uc003djm.2_Missense_Mutation_p.E2139K	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2332	Filamin 22.|Interaction with INPPL1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		AGCCGTGGAGGAGTGCCACGT	0.552000													4	31					0	0	0	0
PXK	54899	broad.mit.edu	37	3	58395289	58395289	+	Nonsense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr3:58395289C>T	uc003djz.1	+	15	1438	c.1339C>T	c.(1339-1341)CAG>TAG	p.Q447*	PXK_uc003djx.1_Nonsense_Mutation_p.Q447*|PXK_uc003djy.1_Nonsense_Mutation_p.Q430*|PXK_uc003dka.1_Nonsense_Mutation_p.Q447*|PXK_uc003dkb.1_Nonsense_Mutation_p.Q364*|PXK_uc003dkc.1_Nonsense_Mutation_p.Q430*|PXK_uc011bfe.1_Nonsense_Mutation_p.Q414*|PXK_uc010hnj.1_Nonsense_Mutation_p.Q414*|PXK_uc003dkd.1_Nonsense_Mutation_p.Q310*|PXK_uc010hnk.1_Nonsense_Mutation_p.Q221*	NM_017771	NP_060241	Q7Z7A4	PXK_HUMAN	PX domain containing serine/threonine kinase	447	Protein kinase.				cell communication|inflammatory response|negative regulation of ATPase activity|negative regulation of ion transport|regulation of synaptic transmission	centrosome|cytoplasm|nucleus|plasma membrane	actin binding|ATP binding|phosphatidylinositol binding|phosphatidylinositol binding|protein C-terminus binding|protein kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000249)|KIRC - Kidney renal clear cell carcinoma(10;0.00346)|Kidney(10;0.00368)|OV - Ovarian serous cystadenocarcinoma(275;0.22)		GACAAGAGCTCAGTCCCACCA	0.418000													4	27					0	0	0	0
ACOX2	8309	broad.mit.edu	37	3	58516345	58516345	+	Silent	SNP	G	A	A	rs142094321	byFrequency	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr3:58516345G>A	uc003dkl.2	-	8	1015	c.840C>T	c.(838-840)TAC>TAT	p.Y280Y		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2	280					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		CGAGTTTGACGTAGGTGCCAT	0.597000													7	16					0	0	0	0
KBTBD12	166348	broad.mit.edu	37	3	127703084	127703084	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr3:127703084C>T	uc010hsr.2	+	5	1838	c.1835C>T	c.(1834-1836)CCG>CTG	p.P612L	KBTBD12_uc003ejy.3_Missense_Mutation_p.P219L|KBTBD12_uc010hsq.2_RNA|KBTBD12_uc003eka.3_Missense_Mutation_p.P187L	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	612										ovary(1)	1						CTCATCCCCCCGCCTTCAGAT	0.537000													21	32					0	0	0	0
TRPC1	7220	broad.mit.edu	37	3	142511763	142511763	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr3:142511763G>A	uc003evc.2	+	9	1671	c.1535G>A	c.(1534-1536)CGT>CAT	p.R512H	TRPC1_uc003evb.2_Missense_Mutation_p.R478H|TRPC1_uc011bni.1_Intron	NM_003304	NP_003295	P48995	TRPC1_HUMAN	transient receptor potential cation channel,	512	Extracellular (Potential).				axon guidance|cytosolic calcium ion homeostasis|positive regulation of release of sequestered calcium ion into cytosol|response to calcium ion	cytosol|integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						AGTTATCTTCGTCTCTTTTTT	0.338000													12	35					0	0	0	0
GPR160	26996	broad.mit.edu	37	3	169801877	169801877	+	Silent	SNP	T	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr3:169801877T>C	uc003fgi.2	+	4	707	c.117T>C	c.(115-117)AAT>AAC	p.N39N	GPR160_uc010hwq.2_Silent_p.N39N	NM_014373	NP_055188	Q9UJ42	GP160_HUMAN	G protein-coupled receptor 160	39	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_cancers(22;3.26e-22)|all_epithelial(15;5.71e-27)|all_lung(20;8.41e-17)|Lung NSC(18;3.49e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0655)			TATTATTAAATATCCTTACAC	0.328000													19	34					0	0	0	0
HTR3D	200909	broad.mit.edu	37	3	183756386	183756386	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr3:183756386C>T	uc011bqv.1	+	7	1109	c.1109C>T	c.(1108-1110)CCG>CTG	p.P370L	HTR3D_uc003fmj.2_Missense_Mutation_p.P195L|HTR3D_uc011bqu.1_Missense_Mutation_p.P320L|HTR3D_uc010hxp.2_Missense_Mutation_p.P149L	NM_001163646	NP_001157118	Q70Z44	5HT3D_HUMAN	5-hydroxytryptamine receptor 3 subunit D isoform	370	Cytoplasmic (Potential).					integral to membrane|plasma membrane	extracellular ligand-gated ion channel activity|receptor activity				0	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;6.23e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			AATAAGGGCCCGGGTCTCACC	0.468000													6	18					0	0	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2307028	2307028	+	Missense_Mutation	SNP	G	A	A	rs145750553		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr4:2307028G>A	uc003gex.1	-	8	1358	c.1039C>T	c.(1039-1041)CGC>TGC	p.R347C	ZFYVE28_uc011bvk.1_Missense_Mutation_p.R277C|ZFYVE28_uc011bvl.1_Missense_Mutation_p.R317C|ZFYVE28_uc003gew.1_Missense_Mutation_p.R233C	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	347					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						TGGACCATGCGGCTGAGCTGC	0.657000													9	40					0	0	0	0
GBA3	57733	broad.mit.edu	37	4	22737769	22737769	+	Missense_Mutation	SNP	G	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr4:22737769G>T	uc003gqp.3	+	2	315	c.224G>T	c.(223-225)CGC>CTC	p.R75L	GBA3_uc010iep.2_Missense_Mutation_p.R75L|GBA3_uc011bxo.1_Missense_Mutation_p.R76L	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	75					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						ACTCATTACCGCTTCTCTCTT	0.433000													28	84					6.07407e-21	6.95225e-21	1	0
GBA3	57733	broad.mit.edu	37	4	22820363	22820363	+	Silent	SNP	C	G	G			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr4:22820363C>G	uc003gqp.3	+	5	1318	c.1227C>G	c.(1225-1227)GTC>GTG	p.V409V	GBA3_uc010iep.2_Silent_p.V102V|GBA3_uc011bxo.1_Silent_p.V410V	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	409					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						TTGATAAAGTCAATCTTCAAG	0.393000													7	12					0	0	0	0
PGM2	55276	broad.mit.edu	37	4	37848660	37848660	+	Silent	SNP	G	A	A	rs146573335	by1000genomes	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr4:37848660G>A	uc011byb.1	+	9	1189	c.1116G>A	c.(1114-1116)ACG>ACA	p.T372T	PGM2_uc011bya.1_Silent_p.T233T|PGM2_uc011byc.1_Silent_p.T212T	NM_018290	NP_060760	Q96G03	PGM2_HUMAN	phosphoglucomutase 2	372					glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity|phosphopentomutase activity			ovary(1)	1						TCAAAGACACGTACATGTTGT	0.498000													37	104					0	0	0	0
C4orf33	132321	broad.mit.edu	37	4	130030466	130030466	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr4:130030466G>A	uc003igu.3	+	4	611	c.247G>A	c.(247-249)GGA>AGA	p.G83R	C4orf33_uc010ioc.1_Missense_Mutation_p.G83R|C4orf33_uc010iod.2_Missense_Mutation_p.G83R	NM_173487	NP_775758	Q8N1A6	CD033_HUMAN	hypothetical protein LOC132321	83										upper_aerodigestive_tract(1)	1						TGACAGCCACGGACAGCATTT	0.328000													27	87					0	0	0	0
CTNND2	1501	broad.mit.edu	37	5	11346651	11346651	+	Missense_Mutation	SNP	C	G	G			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr5:11346651C>G	uc003jfa.1	-	9	1606	c.1461G>C	c.(1459-1461)CAG>CAC	p.Q487H	CTNND2_uc010itt.2_Missense_Mutation_p.Q396H|CTNND2_uc011cmy.1_Missense_Mutation_p.Q150H|CTNND2_uc011cmz.1_Missense_Mutation_p.Q54H|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.Q54H	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	487					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AGCTGGCCCTCTGGAAGGTGG	0.642000													19	103					0	0	0	0
BRIX1	55299	broad.mit.edu	37	5	34924964	34924964	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr5:34924964G>A	uc003jja.2	+	9	700	c.676G>A	c.(676-678)GAT>AAT	p.D226N		NM_018321	NP_060791	Q8TDN6	BRX1_HUMAN	BRIX	226	Brix.				ribosome biogenesis|translation	nucleolus	aminoacyl-tRNA ligase activity|ATP binding|protein binding				0						CATAGAAGAAGATGCTGCTCT	0.338000													9	68					0	0	0	0
RASA1	5921	broad.mit.edu	37	5	86675667	86675668	+	Splice_Site	DNP	CG	TT	TT	rs138785106	by1000genomes	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr5:86675667_86675668CG>TT	uc003kiw.2	+	19	2721	c.2603_splice	c.e19+1	p.P868_splice	RASA1_uc010jav.2_Splice_Site|RASA1_uc003kix.2_Splice_Site_p.P691_splice|RASA1_uc011ctv.1_Splice_Site_p.P701_splice|RASA1_uc011ctw.1_Splice_Site_p.P702_splice|RASA1_uc010jaw.2_Splice_Site_p.P690_splice	NM_002890	NP_002881	P20936	RASA1_HUMAN	RAS p21 protein activator 1 isoform 1						cytokinesis|embryo development|intracellular signal transduction|negative regulation of cell-matrix adhesion|negative regulation of neuron apoptosis|negative regulation of Ras protein signal transduction|positive regulation of anti-apoptosis|regulation of actin filament polymerization|regulation of cell shape|regulation of RNA metabolic process|vasculogenesis	cytosol|intrinsic to internal side of plasma membrane	glycoprotein binding|GTPase binding|potassium channel inhibitor activity|Ras GTPase activator activity|receptor binding			upper_aerodigestive_tract(3)|ovary(1)|lung(1)	5		all_cancers(142;8.25e-07)|Lung NSC(167;0.000185)|all_lung(232;0.000222)|Colorectal(57;0.00542)|Ovarian(174;0.0423)		OV - Ovarian serous cystadenocarcinoma(54;4.72e-41)|Epithelial(54;1.51e-36)|all cancers(79;3.76e-31)		ATACTTCCACCGTAAGTGGTGA	0.302000													19	27					0	0	0	0
SNX24	28966	broad.mit.edu	37	5	122337107	122337107	+	Missense_Mutation	SNP	G	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr5:122337107G>C	uc011cwo.1	+	5	521	c.352G>C	c.(352-354)GAT>CAT	p.D118H	SNX24_uc003ktf.2_Missense_Mutation_p.D118H|SNX24_uc010jcy.2_Missense_Mutation_p.D118H	NM_014035	NP_054754	Q9Y343	SNX24_HUMAN	SBBI31 protein	118	PX.				cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding				0		Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.0897)|Kidney(363;0.137)	OV - Ovarian serous cystadenocarcinoma(64;0.000654)|Epithelial(69;0.0016)|all cancers(49;0.0139)		TAGATCTTTTGATGAAACAGA	0.318000													3	15					0	0	0	0
PCDHA7	56141	broad.mit.edu	37	5	140216300	140216300	+	Nonsense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr5:140216300C>T	uc003lhq.2	+	1	2332	c.2332C>T	c.(2332-2334)CAG>TAG	p.Q778*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Nonsense_Mutation_p.Q778*	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	778	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGCCTTCCTCAGGGTCCATC	0.478000													20	11					0	0	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140801398	140801398	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr5:140801398G>A	uc003lkq.1	+	1	862	c.604G>A	c.(604-606)GAC>AAC	p.D202N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Missense_Mutation_p.D202N|PCDHGA11_uc003lkp.1_Missense_Mutation_p.D202N	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	202	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGAAGCCTGGACCGAGAGAA	0.562000													12	30					0	0	0	0
GPLD1	2822	broad.mit.edu	37	6	24437398	24437398	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr6:24437398G>A	uc003ned.1	-	21	2251	c.2140C>T	c.(2140-2142)CGC>TGC	p.R714C		NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	714	FG-GAP 6.					extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						CGGGAGAAGCGGCGGTCTCCG	0.552000													15	43					0	0	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333477	33333477	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr6:33333477G>A	uc003shx.2	-	1	663	c.529C>T	c.(529-531)CGG>TGG	p.R177W		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						GCCCCAAACCGTACGGGCACC	0.637000													6	15					0	0	0	0
DNAH8	1769	broad.mit.edu	37	6	38825334	38825334	+	Nonsense_Mutation	SNP	C	G	G			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr6:38825334C>G	uc003ooe.1	+	40	5723	c.5123C>G	c.(5122-5124)TCA>TGA	p.S1708*		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ACACACGATTCAGAAGAGGCT	0.348000													14	41					0	0	0	0
CUL9	23113	broad.mit.edu	37	6	43152214	43152214	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr6:43152214G>A	uc003ouk.2	+	2	241	c.166G>A	c.(166-168)GAA>AAA	p.E56K	CUL9_uc003ouj.1_Missense_Mutation_p.E56K|CUL9_uc003oul.2_Missense_Mutation_p.E56K|CUL9_uc010jyk.2_5'UTR|CUL9_uc003oum.1_5'Flank	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	56					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						AGTGGGTGTGGAAGAAGGCAA	0.562000													18	37					0	0	0	0
POPDC3	64208	broad.mit.edu	37	6	105606599	105606599	+	Nonsense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr6:105606599G>A	uc003prb.2	-	4	1024	c.622C>T	c.(622-624)CGA>TGA	p.R208*	uc003pqz.2_Intron|POPDC3_uc003pra.2_RNA	NM_022361	NP_071756	Q9HBV1	POPD3_HUMAN	popeye protein 3	208						integral to membrane				skin(3)|ovary(2)	5		all_cancers(87;4.87e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0157)|Colorectal(196;0.202)|Lung NSC(302;0.238)				GACACATATCGACAATCAGTT	0.413000													20	103					0	0	0	0
PDSS2	57107	broad.mit.edu	37	6	107780282	107780282	+	Missense_Mutation	SNP	G	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr6:107780282G>C	uc003prt.2	-	1	498	c.208C>G	c.(208-210)CGC>GGC	p.R70G	PDSS2_uc011eak.1_Intron|PDSS2_uc011eal.1_Missense_Mutation_p.R70G|PDSS2_uc003pru.2_Missense_Mutation_p.R70G|PDSS2_uc003prv.2_Missense_Mutation_p.R70G	NM_020381	NP_065114	Q86YH6	DLP1_HUMAN	prenyl diphosphate synthase, subunit 2	70					isoprenoid biosynthetic process|ubiquinone biosynthetic process	mitochondrion	protein heterodimerization activity			ovary(2)	2	Breast(9;0.0127)	all_cancers(87;3.63e-05)|Acute lymphoblastic leukemia(125;2.86e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.0108)|Colorectal(196;0.156)|Lung NSC(302;0.211)	BRCA - Breast invasive adenocarcinoma(8;0.0101)|all cancers(7;0.243)	BRCA - Breast invasive adenocarcinoma(108;0.112)|OV - Ovarian serous cystadenocarcinoma(136;0.173)|all cancers(137;0.191)		AGCAGGCAGCGAAGGCTCATG	0.622000											OREG0017595	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	36					0	0	0	0
LACE1	246269	broad.mit.edu	37	6	108723212	108723212	+	Missense_Mutation	SNP	A	G	G			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr6:108723212A>G	uc003psj.2	+	7	947	c.761A>G	c.(760-762)AAT>AGT	p.N254S		NM_145315	NP_660358	Q8WV93	LACE1_HUMAN	lactation elevated 1	254							ATP binding			central_nervous_system(1)	1		all_cancers(87;1.5e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;6.79e-05)|Colorectal(196;0.0294)|all_lung(197;0.0486)|Lung SC(18;0.152)		BRCA - Breast invasive adenocarcinoma(108;0.00179)|Epithelial(106;0.0024)|all cancers(137;0.00379)|OV - Ovarian serous cystadenocarcinoma(136;0.0118)		CTCTATAAAAATGGACTCCAA	0.284000													3	11					0	0	0	0
LAMA2	3908	broad.mit.edu	37	6	129714240	129714240	+	Missense_Mutation	SNP	G	C	C	rs138296015	by1000genomes	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr6:129714240G>C	uc003qbn.2	+	37	5390	c.5285G>C	c.(5284-5286)CGG>CCG	p.R1762P	LAMA2_uc003qbo.2_Missense_Mutation_p.R1762P	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1762	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GGAGAGTCCCGGGGGGAAAAT	0.468000													13	47					0	0	0	0
L3MBTL3	84456	broad.mit.edu	37	6	130425615	130425615	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr6:130425615G>A	uc003qbt.2	+	19	1951	c.1781G>A	c.(1780-1782)CGT>CAT	p.R594H	L3MBTL3_uc003qbu.2_Missense_Mutation_p.R569H	NM_032438	NP_115814	Q96JM7	LMBL3_HUMAN	l(3)mbt-like 3 isoform a	594					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.0266)|OV - Ovarian serous cystadenocarcinoma(155;0.154)		AATAAAGACCGTATTTTTCCA	0.383000													31	61					0	0	0	0
C7orf46	340277	broad.mit.edu	37	7	23731200	23731200	+	Missense_Mutation	SNP	G	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr7:23731200G>C	uc003swo.3	+	4	711	c.622G>C	c.(622-624)GAT>CAT	p.D208H	C7orf46_uc003swq.3_Missense_Mutation_p.D208H|C7orf46_uc003swr.3_Missense_Mutation_p.D150H|C7orf46_uc003swp.3_RNA|C7orf46_uc010kup.2_RNA	NM_199136	NP_954587	A4D161	CG046_HUMAN	hypothetical protein LOC340277 isoform 1	208											0						CATGCGGTTAGATGACAGTGG	0.423000													23	52					0	0	0	0
EGFR	1956	broad.mit.edu	37	7	55233012	55233012	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr7:55233012G>A	uc003tqk.2	+	15	2008	c.1762G>A	c.(1762-1764)GGC>AGC	p.G588S	EGFR_uc003tqi.2_Missense_Mutation_p.G588S|EGFR_uc003tqj.2_Missense_Mutation_p.G588S|EGFR_uc010kzg.1_Missense_Mutation_p.G543S|EGFR_uc011kco.1_Missense_Mutation_p.G535S|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_RNA|EGFR_uc003tqn.2_RNA	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	588	Approximate.|Extracellular (Potential).			DGPH->AGPA: Decreases intramolecular interactions and facilitates EGF binding.	activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	CTACATTGACGGCCCCCACTG	0.532000		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			23	43					0	0	0	0
ZAN	7455	broad.mit.edu	37	7	100391590	100391590	+	Missense_Mutation	SNP	G	A	A	rs143981169	by1000genomes	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr7:100391590G>A	uc003uwj.2	+	44	8101	c.7936G>A	c.(7936-7938)GAG>AAG	p.E2646K	ZAN_uc003uwk.2_Intron|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_Intron|ZAN_uc010lhi.2_Intron|ZAN_uc011kke.1_Intron	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2646	Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GTGGCACCCAGAGCCTCCCCT	0.672000													5	17					0	0	0	0
MUC17	140453	broad.mit.edu	37	7	100686824	100686824	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr7:100686824C>T	uc003uxp.1	+	3	12180	c.12127C>T	c.(12127-12129)CGT>TGT	p.R4043C	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4043	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TGTCACCACCCGTCCTGTGAC	0.537000													40	106					0	0	0	0
CUX1	1523	broad.mit.edu	37	7	101840038	101840038	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr7:101840038C>T	uc003uyx.3	+	15	1385	c.1347C>T	c.(1345-1347)CAC>CAT	p.H449H	CUX1_uc003uys.3_Silent_p.H460H|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	449					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						ATGGTACACACCAGTTCTCAC	0.572000													30	73					0	0	0	0
KCND2	3751	broad.mit.edu	37	7	119915562	119915562	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr7:119915562C>T	uc003vjj.1	+	1	1841	c.876C>T	c.(874-876)CTC>CTT	p.L292L		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	292	Helical; Voltage-sensor; Name=Segment S4; (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TTGTCACACTCCGAGTCTTCC	0.527000													12	23					0	0	0	0
PAX4	5078	broad.mit.edu	37	7	127255554	127255554	+	Silent	SNP	G	C	C			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr7:127255554G>C	uc010lld.1	-	1	227	c.21C>G	c.(19-21)CTC>CTG	p.L7L	PAX4_uc003vmf.2_5'UTR|PAX4_uc003vmg.1_Silent_p.L7L|PAX4_uc003vmh.2_5'UTR	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	15	Paired.				cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CATTCACAAAGAGCCCCCCAA	0.617000													15	81					0	0	0	0
SSBP1	6742	broad.mit.edu	37	7	141445354	141445354	+	Missense_Mutation	SNP	G	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr7:141445354G>T	uc003vwo.1	+	6	451	c.373G>T	c.(373-375)GTG>TTG	p.V125L	SSBP1_uc011kri.1_Missense_Mutation_p.V125L|SSBP1_uc010lnp.1_Missense_Mutation_p.V125L	NM_003143	NP_003134	Q04837	SSBP_HUMAN	single-stranded DNA binding protein 1 precursor	125	SSB.				DNA replication|positive regulation of helicase activity	mitochondrial nucleoid	single-stranded DNA binding			ovary(1)	1	Melanoma(164;0.0171)					TAAAAATAATGTGAGGCGACA	0.313000													15	40					4.7546e-09	5.19181e-09	1	0
KRBA1	84626	broad.mit.edu	37	7	149430329	149430329	+	Silent	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr7:149430329G>A	uc003wfz.2	+	18	2685	c.2286G>A	c.(2284-2286)CCG>CCA	p.P762P	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_RNA|KRBA1_uc003wgb.2_Silent_p.P369P	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	762	Pro-rich.									ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCCAGGGCCCGCCTGAGCTGC	0.647000													39	114					0	0	0	0
CA8	767	broad.mit.edu	37	8	61178601	61178601	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr8:61178601C>T	uc003xtz.1	-	3	548	c.300G>A	c.(298-300)TCG>TCA	p.S100S	CA8_uc003xua.1_Silent_p.S100S|CA8_uc003xub.2_Silent_p.S100S	NM_004056	NP_004047	P35219	CAH8_HUMAN	carbonic anhydrase VIII	100			S -> P (in CMARQ3; affects protein stability owing to accelerated proteasomal degradation).		one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding				0		all_cancers(86;0.172)|all_epithelial(80;0.0383)|all_lung(136;0.0413)|Lung NSC(129;0.0474)				ATGGTCCTCCCGAAAGAACTG	0.388000													11	30					0	0	0	0
KCNS2	3788	broad.mit.edu	37	8	99440583	99440583	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr8:99440583C>T	uc003yin.2	+	2	726	c.376C>T	c.(376-378)CGC>TGC	p.R126C		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	126	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			CTACCATGGCCGCAAAGTAGA	0.552000													20	40					0	0	0	0
VPS13B	157680	broad.mit.edu	37	8	100729474	100729474	+	Missense_Mutation	SNP	G	A	A	rs147099791	by1000genomes	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr8:100729474G>A	uc003yiv.2	+	37	6716	c.6605G>A	c.(6604-6606)CGC>CAC	p.R2202H	VPS13B_uc003yiw.2_Missense_Mutation_p.R2177H	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2202					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GAAAGAAGCCGCATTCTGATA	0.393000													28	32					0	0	0	0
PHF20L1	51105	broad.mit.edu	37	8	133848943	133848943	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr8:133848943G>A	uc003ytt.2	+	16	2393	c.2068G>A	c.(2068-2070)GAG>AAG	p.E690K	PHF20L1_uc011lja.1_Missense_Mutation_p.E664K	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	690	PHD-type.						nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			TGAGATGGATGAGGAGAATGG	0.388000													14	70					0	0	0	0
NRBP2	340371	broad.mit.edu	37	8	144919579	144919579	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr8:144919579C>T	uc011lkt.1	-	12	1216	c.1076G>A	c.(1075-1077)CGG>CAG	p.R359Q	NRBP2_uc003yzv.2_Missense_Mutation_p.R116Q|NRBP2_uc003yzz.1_5'Flank|NRBP2_uc003yzw.2_Missense_Mutation_p.R151Q|NRBP2_uc010mfl.2_Missense_Mutation_p.R151Q|NRBP2_uc010mfm.2_Missense_Mutation_p.R116Q|NRBP2_uc011lks.1_Missense_Mutation_p.R116Q|NRBP2_uc003yzy.2_Missense_Mutation_p.R116Q	NM_178564	NP_848659	Q9NSY0	NRBP2_HUMAN	nuclear receptor binding protein 2	359					negative regulation of neuron apoptosis|neuron differentiation	cytoplasm	ATP binding|protein kinase activity			central_nervous_system(2)	2	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;6.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			GACTGCTCACCGCCACTGCAG	0.532000													4	9					0	0	0	0
UNC13B	10497	broad.mit.edu	37	9	35377547	35377547	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr9:35377547C>T	uc003zwq.2	+	15	1963	c.1671C>T	c.(1669-1671)ATC>ATT	p.I557I	UNC13B_uc003zwr.2_Silent_p.I557I	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	557					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			GCATGAAGATCCGAGAGCGAA	0.507000													16	265					0	0	0	0
TLN1	7094	broad.mit.edu	37	9	35724888	35724888	+	Silent	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr9:35724888C>T	uc003zxt.2	-	4	651	c.297G>A	c.(295-297)ACG>ACA	p.T99T	TLN1_uc003zxu.3_Silent_p.T99T	NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	99	FERM.				axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CCACCATGATCGTCTTCACAG	0.512000													21	198					0	0	0	0
TMEM2	23670	broad.mit.edu	37	9	74305092	74305092	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr9:74305092G>A	uc011lsa.1	-	22	4307	c.3767C>T	c.(3766-3768)CCA>CTA	p.P1256L	TMEM2_uc011lrz.1_Missense_Mutation_p.P249L|TMEM2_uc010mos.2_Missense_Mutation_p.P1193L|TMEM2_uc011lsb.1_RNA|TMEM2_uc004aik.2_Missense_Mutation_p.P90L	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	1256						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		CAAGCGGAATGGAACGCTGCA	0.478000													23	74					0	0	0	0
VPS13A	23230	broad.mit.edu	37	9	79840885	79840885	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr9:79840885G>A	uc004akr.2	+	14	1465	c.1205G>A	c.(1204-1206)AGA>AAA	p.R402K	VPS13A_uc004akp.3_Missense_Mutation_p.R402K|VPS13A_uc004akq.3_Missense_Mutation_p.R402K|VPS13A_uc004aks.2_Missense_Mutation_p.R402K	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	402	TPR 2.				Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						ACTATAGCTAGACAGACGGCA	0.264000													23	89					0	0	0	0
Unknown	0	broad.mit.edu	37	9	90747097	90747097	+	Silent	SNP	G	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr9:90747097G>T	uc011lti.1	-	4	884	c.855C>A	c.(853-855)GCC>GCA	p.A285A						SubName: Full=cDNA FLJ59639;																		ACCAGGAGAGGGCAGAAACTT	0.557000													31	107					1.75199e-13	1.99328e-13	1	0
DMD	1756	broad.mit.edu	37	X	32328384	32328384	+	Missense_Mutation	SNP	G	A	A			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chrX:32328384G>A	uc004dda.1	-	42	6176	c.5932C>T	c.(5932-5934)CGT>TGT	p.R1978C	DMD_uc004dcw.2_Missense_Mutation_p.R634C|DMD_uc004dcx.2_Missense_Mutation_p.R637C|DMD_uc004dcz.2_Missense_Mutation_p.R1855C|DMD_uc004dcy.1_Missense_Mutation_p.R1974C|DMD_uc004ddb.1_Missense_Mutation_p.R1970C|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1978	Spectrin 13.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GTTTCTTCACGGACAGTGTGC	0.378000													8	5					0	0	0	0
PHKA1	5255	broad.mit.edu	37	X	71800893	71800893	+	Missense_Mutation	SNP	C	T	T			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chrX:71800893C>T	uc004eax.3	-	32	3932	c.3631G>A	c.(3631-3633)GTG>ATG	p.V1211M	PHKA1_uc004eay.3_Missense_Mutation_p.V1198M|PHKA1_uc011mqi.1_Missense_Mutation_p.V1139M|PHKA1_uc010nll.2_Missense_Mutation_p.V243M	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	1211					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					AACTCCTGCACGTAGGTGGCG	0.567000													7	8					0	0	0	0
CT47B1	643311	broad.mit.edu	37	X	120008979	120008979	+	Silent	SNP	T	C	C	rs871733	by1000genomes	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chrX:120008979T>C	uc011muc.1	-	1	801	c.546A>G	c.(544-546)CCA>CCG	p.P182P		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	182											0						CCTCGCCTTCTGGGGCTGCAG	0.711000													3	26					0	0	0	0
SLC9A1	6548	broad.mit.edu	37	1	27436232	27436232	+	Frame_Shift_Del	DEL	C	-	-			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr1:27436232delC	uc001bnm.2	-	3	1476	c.850delG	c.(850-852)GAAfs	p.E284fs	SLC9A1_uc010ofk.1_5'UTR|SLC9A1_uc001bnn.2_Frame_Shift_Del_p.E284fs	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	284	Extracellular (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	CCCACGTGTTCGTAGTTGGCA	0.642													---	---	---							
MLL2	8085	broad.mit.edu	37	12	49427266	49427268	+	In_Frame_Del	DEL	TGC	-	-			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr12:49427266_49427268delTGC	uc001rta.3	-	39	11220_11222	c.11220_11222delGCA	c.(11218-11223)CAGCAA>CAA	p.3740_3741QQ>Q		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	3740_3741	Potential.|Gln-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						ctgctgctgttgctgctgctgct	0.468			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			---	---	---							
Unknown	0	broad.mit.edu	37	15	56615905	56615937	+	IGR	DEL	AGGAGGAGAAGGAGGAAGAGGAGGAGGAGGAGA	-	-	rs71110382	by1000genomes	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr15:56615905_56615937delAGGAGGAGAAGGAGGAAGAGGAGGAGGAGGAGA								RFX7 (80422 upstream) : TEX9 (41707 downstream)																							aagaaggaggaggaggagaaggaggaagaggaggaggaggagaaggaggagaa	0.116													---	---	---							
KRT14	3861	broad.mit.edu	37	17	39740519	39740521	+	In_Frame_Del	DEL	TTC	-	-			TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr17:39740519_39740521delTTC	uc002hxf.1	-	3	814_816	c.753_755delGAA	c.(751-756)AAGAAC>AAC	p.K251del	JUP_uc010wfs.1_Intron|KRT14_uc010cxp.1_In_Frame_Del_p.K251del	NM_000526	NP_000517	P02533	K1C14_HUMAN	keratin 14	251	Coil 1B.|Rod.				epidermis development|hemidesmosome assembly|intermediate filament bundle assembly	cytosol|keratin filament|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.000307)				CTCCTCGTGGTTCTTCTTCAGGT	0.414													---	---	---							
SEC23B	10483	broad.mit.edu	37	20	18485751	18485751	+	5'Flank	DEL	A	-	-	rs74180905		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr20:18485751delA	uc002wqz.1	+						SEC23B_uc002wra.1_5'Flank|SEC23B_uc002wrb.1_5'Flank|SEC23B_uc010zsb.1_5'Flank|SEC23B_uc002wrc.1_5'Flank	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B						ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						CCTCATTCAGAAAAAAAAAAA	0.373													---	---	---							
TNXB	7148	broad.mit.edu	37	6	32049423	32049424	+	Frame_Shift_Ins	INS	-	G	G	rs12211410	by1000genomes	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr6:32049423_32049424insG	uc003nzl.2	-	10	3965_3966	c.3763_3764insC	c.(3763-3765)CGCfs	p.R1255fs		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1342					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GAACTCAGGGCGGGGGGGCTCC	0.639													---	---	---							
Unknown	0	broad.mit.edu	37	9	93513725	93513727	+	IGR	DEL	AAC	-	-	rs34140480		TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr9:93513725_93513727delAAC								DIRAS2 (108617 upstream) : SYK (50285 downstream)																							AAAATAAGCAAACAACTGCCAGG	0.478													---	---	---							
CAMSAP1	157922	broad.mit.edu	37	9	138715799	138715800	+	Frame_Shift_Ins	INS	-	T	T	rs148250832	byFrequency	TCGA-IQ-7630-01A-11D-2078-08	TCGA-IQ-7630-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	80442509-c2f0-4047-956e-a3633dfd472b	fff52fee-b4e5-4e06-976f-894ca57c3a9e	g.chr9:138715799_138715800insT	uc004cgr.3	-	10	1396_1397	c.1396_1397insA	c.(1396-1398)ACCfs	p.T466fs	CAMSAP1_uc004cgq.3_Frame_Shift_Ins_p.T356fs|CAMSAP1_uc010nbg.2_Frame_Shift_Ins_p.T188fs	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	466						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		GACTCACCTGGTTTTTTTTTCT	0.337													---	---	---							
