Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CCNL2	81669	hgsc.bcm.edu;broad.mit.edu	37	1	1334456	1334456	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	47	16	46	0	63	28	35	0	0
CCNL2	81669	hgsc.bcm.edu;broad.mit.edu	37	1	1334592	1334592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	63	28	49	0	31	16	15	0	0
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	6528353	6528353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	18	8	25	0	28	13	15	0	0
PRAMEF1	65121	hgsc.bcm.edu;broad.mit.edu	37	1	12854436	12854436	+	Silent	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	1313	504	789	1	0	0	0	0	0
CROCCP2	84809	broad.mit.edu	37	1	16946407	16946407	+	RNA	SNP	T	T	G	rs10796418		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	39	7	40	1	31	24	7	0	0
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	36748232	36748232	+	Missense_Mutation	SNP	G	G	A	rs148045717		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	182	82	91	0	48	30	18	0	0
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	39910503	39910503	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	109	49	83	0	0	0	0	0	0
ST7L	54879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	113126670	113126670	+	Silent	SNP	T	T	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	223	105	144	1	0	0	0	0	0
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	116931284	116931284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	251	98	175	0	101	59	42	0	0
NBPF14	25832	hgsc.bcm.edu	37	1	148025786	148025786	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	1187	144	1065	0	87	84	3	0	0
NBPF14	25832	hgsc.bcm.edu;broad.mit.edu	37	1	148025829	148025829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	1037	184	879	1	9	9	0	0	0
SHE	126669	hgsc.bcm.edu	37	1	154474217	154474217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	21	8	27	0	0	0	0	0	0
TDRD10	126668	hgsc.bcm.edu;broad.mit.edu	37	1	154493835	154493835	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	368	35	311	0	1	1	0	0	0
NDUFS2	4720	broad.mit.edu	37	1	161183707	161183707	+	Silent	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	329	5	267	0	21	21	0	0	0
F5	2153	broad.mit.edu	37	1	169525999	169525999	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	120	4	105	0	1	1	0	0	0
XPR1	9213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	180849312	180849312	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	185	90	129	1	36	24	12	0	0
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu	37	1	204587907	204587907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	116	8	140	0	0	0	0	0	0
SLC26A9	115019	hgsc.bcm.edu;ucsc.edu	37	1	205888030	205888030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	646	307	502	2	0	0	0	0	0
NEBL	10529	hgsc.bcm.edu;broad.mit.edu	37	10	21309109	21309109	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	193	11	153	0	6	6	0	0	0
SGMS1	259230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	52071078	52071078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	129	57	113	0	25	11	14	0	0
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	94297234	94297234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	210	85	166	0	9	4	5	0	0
RIC8A	60626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	209483	209483	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	107	23	142	0	54	50	4	0	0
OR4S2	219431	broad.mit.edu	37	11	55418712	55418712	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	591	20	447	1	0	0	0	0	0
APLNR	187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	57004337	57004337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	149	70	181	0	2	2	0	0	0
MS4A15	219995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	60540926	60540926	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	70	39	71	0	0	0	0	0	0
VWCE	220001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	61026184	61026184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	178	55	224	0	4	4	0	0	0
CORO1B	57175	hgsc.bcm.edu;broad.mit.edu	37	11	67207603	67207603	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	139	65	172	0	0	0	0	0	0
STARD10	10809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	72470333	72470333	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	127	64	128	0	68	38	30	0	0
ARRB1	408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	74985127	74985127	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	366	162	382	0	0	0	0	0	0
RAPGEF3	10411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	48142257	48142257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	82	30	87	0	4	2	2	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	49425839	49425839	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	81	36	96	0	18	12	6	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu	37	12	49426526	49426526	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	31	13	42	0	7	2	5	0	0
HSP90B1	7184	broad.mit.edu	37	12	104327895	104327895	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	261	6	201	0	290	284	6	0	0
INSM2	84684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	36005048	36005048	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	116	23	133	0	0	0	0	0	0
MIA2	117153	hgsc.bcm.edu	37	14	39717145	39717145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	102	6	70	1	0	0	0	0	0
FKBP3	2287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	45603575	45603575	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	161	59	215	0	20	13	7	0	0
ZFP36L1	677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	69256349	69256349	+	Silent	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	196	81	229	0	169	90	78	1	0
PTGR2	145482	broad.mit.edu	37	14	74325603	74325603	+	Splice_Site	SNP	G	G	T	rs145655340	alternate_allele	TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	111	4	68	0	0	0	0	0	0
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	75514890	75514890	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	358	134	223	0	4	1	3	0	0
PPP2R5C	5527	broad.mit.edu	37	14	102391505	102391505	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	427	7	343	0	20	19	1	0	0
SNORD116-1	100033413	broad.mit.edu;ucsc.edu	37	15	25296712	25296712	+	RNA	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	190	88	124	0	0	0	0	0	0
GABRB3	2562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	26793190	26793190	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	273	125	245	0	8	8	0	0	0
APBA2	321	broad.mit.edu	37	15	29368274	29368274	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	423	8	311	0	0	0	0	0	0
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	51857284	51857284	+	Splice_Site	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	55	24	31	0	0	0	0	0	0
NTN3	4917	broad.mit.edu	37	16	2522390	2522390	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	91	3	120	0	0	0	0	0	0
GGA2	23062	broad.mit.edu	37	16	23503028	23503028	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	407	9	289	0	47	46	1	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29884594	29884594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	82	13	88	7	4	4	0	0	0
CX3CL1	6376	hgsc.bcm.edu;broad.mit.edu	37	16	57413597	57413597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	109	6	108	0	9	9	0	0	0
WDR59	79726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	74990405	74990405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	123	42	94	0	10	3	7	0	0
ZDHHC7	55625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	85010706	85010706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	285	130	223	0	1	0	1	0	0
ITGAE	3682	hgsc.bcm.edu;broad.mit.edu	37	17	3659152	3659152	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	15	8	8	0	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7579415	7579415	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	143	23	128	0	60	58	2	0	0
MLLT6	4302	hgsc.bcm.edu	37	17	36881009	36881009	+	Missense_Mutation	SNP	C	C	A	rs150198262	byfrequency;alternate_allele	TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	29	2	32	0	49	49	0	0	0
KRT13	3860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	39659037	39659037	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	447	195	456	0	39	15	24	0	0
DBF4B	80174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	42828063	42828063	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	131	59	132	0	1	0	1	0	0
EPN3	55040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	48615544	48615544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	43	29	63	0	7	3	4	0	0
EPN3	55040	hgsc.bcm.edu;ucsc.edu	37	17	48616322	48616322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	24	11	48	0	2	2	0	0	0
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	48628090	48628090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	450	205	323	1	28	28	0	0	0
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	48628385	48628385	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	145	67	100	0	27	27	0	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342197	60342197	+	RNA	SNP	T	T	C	rs76635225		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	79	5	35	1	0	0	0	0	0
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	62238165	62238165	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	1011	701	408	0	0	0	0	0	0
CACNG4	27092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	65026963	65026963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	163	33	102	1	2	2	0	0	0
SLC38A10	124565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	79249777	79249777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	361	77	249	0	0	0	0	0	0
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	28660162	28660162	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	427	225	265	0	2	2	0	0	0
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	757669	757669	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	59	29	53	0	13	2	11	0	0
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	18279617	18279617	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	48	21	65	0	40	19	21	0	0
PRR12	57479	hgsc.bcm.edu;broad.mit.edu	37	19	50099849	50099849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	18	6	42	0	10	8	2	0	0
NLRP9	338321	broad.mit.edu	37	19	56244727	56244727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	147	4	125	0	0	0	0	0	0
ADCY3	109	broad.mit.edu	37	2	25057766	25057766	+	Missense_Mutation	SNP	G	G	A	rs142082596		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	55	3	66	0	21	21	0	0	0
ETAA1	54465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	67631299	67631299	+	Silent	SNP	A	A	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	89	44	51	0	5	5	0	0	0
AFF3	3899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	100623250	100623250	+	Silent	SNP	G	G	A	rs138844530		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	102	43	100	1	0	0	0	0	0
SH3RF3	344558	broad.mit.edu	37	2	110065844	110065844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	42	3	36	0	3	3	0	0	0
RGPD8	727851	broad.mit.edu	37	2	113127775	113127775	+	Missense_Mutation	SNP	G	G	C	rs15849		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	69	3	51	1	10	0	10	0	0
POTEF	728378	hgsc.bcm.edu	37	2	130868165	130868165	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	503	26	341	0	3	3	0	0	0
POTEE	445582	hgsc.bcm.edu	37	2	131985905	131985905	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	646	33	393	0	3	3	0	0	0
NEB	4703	broad.mit.edu	37	2	152397247	152397247	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	186	10	139	1	1	1	0	0	0
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	219886640	219886640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	159	90	279	0	0	0	0	0	0
TUBA4A	7277	broad.mit.edu	37	2	220115274	220115274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	81	4	139	0	9	9	0	0	0
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu	37	2	220420911	220420911	+	Silent	SNP	G	G	A	rs200341414		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	22	8	46	0	1	1	0	0	0
CPXM1	56265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	2775058	2775058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	106	24	128	0	12	10	2	0	0
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	56090811	56090811	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	573	253	338	0	0	0	0	0	0
ZBTB46	140685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	62407208	62407208	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	208	99	176	0	5	5	0	0	0
ANKRD30BP2	149992	broad.mit.edu	37	21	14439254	14439254	+	RNA	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	40	14	40	1	0	0	0	0	0
SLC25A1	6576	broad.mit.edu	37	22	19164390	19164390	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	154	6	147	0	123	123	0	0	0
PICK1	9463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	38470965	38470965	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	66	25	83	0	30	22	8	0	0
MKL1	57591	hgsc.bcm.edu;broad.mit.edu	37	22	40814967	40814967	+	Missense_Mutation	SNP	G	G	A	rs199908950		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	68	11	77	0	6	6	0	0	0
PARVB	29780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	44564537	44564537	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	117	13	103	0	8	8	0	0	0
GTSE1	51512	broad.mit.edu	37	22	46712115	46712115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	133	5	137	0	7	7	0	0	0
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	46930992	46930992	+	Silent	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	48	13	52	0	3	1	2	0	0
LHFPL4	375323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	9547649	9547649	+	Splice_Site	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	390	176	372	2	0	0	0	0	0
EFHB	151651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	19925989	19925989	+	Silent	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	190	85	129	0	0	0	0	0	0
RAD54L2	23132	broad.mit.edu	37	3	51667682	51667682	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	219	6	182	0	5	5	0	0	0
PARP3	10039	broad.mit.edu	37	3	51979556	51979556	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	107	3	104	0	14	14	0	0	0
FLNB	2317	broad.mit.edu	37	3	58089735	58089735	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	173	4	188	0	10	10	0	0	0
GOLGB1	2804	broad.mit.edu	37	3	121386444	121386444	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	136	5	91	0	90	90	0	0	0
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	130287049	130287049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	330	152	239	0	0	0	0	0	0
DLG1	1739	broad.mit.edu	37	3	196771534	196771534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	245	7	144	0	43	41	2	0	0
ZNF876P	642280	broad.mit.edu	37	4	247622	247622	+	RNA	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	17	3	11	0	4	1	3	0	0
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu	37	4	1803568	1803568	+	Missense_Mutation	SNP	C	C	G	rs121913483	bycluster	TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	32	14	44	1	9	3	6	0	0
FGFR3	2261	broad.mit.edu	37	4	1803584	1803584	+	Silent	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	34	14	64	0	262	114	148	0	0
FGFR3	2261	ucsc.edu	37	4	1803749	1803749	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	20	6	28	0	60	22	38	0	0
GRID2	2895	broad.mit.edu	37	4	94032095	94032095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	217	8	157	0	0	0	0	0	0
UNC5C	8633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	96127913	96127913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	106	20	87	0	1	1	0	0	0
EXOSC9	5393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	122722582	122722582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	172	69	193	0	6	2	4	0	0
TRIML1	339976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	189068521	189068521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	133	67	127	1	0	0	0	0	0
WDR41	55255	broad.mit.edu	37	5	76749713	76749713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	175	8	103	0	20	20	0	0	0
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140725009	140725009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	308	143	231	0	0	0	0	0	0
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140811015	140811015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	162	70	191	1	3	3	0	0	0
CLINT1	9685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	157240138	157240138	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	168	83	125	0	68	36	32	0	0
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	180048230	180048230	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	64	30	91	1	6	5	1	0	0
OR14J1	442191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	29274483	29274483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	408	159	258	0	0	0	0	0	0
HLA-J	3137	broad.mit.edu	37	6	29977342	29977342	+	RNA	SNP	A	A	T	rs113017032		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	150	8	91	1	12	12	0	0	0
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	32945959	32945959	+	Silent	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	91	36	99	0	87	46	41	0	0
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	32947799	32947799	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	105	44	72	0	116	77	39	0	0
SMPD2	6610	hgsc.bcm.edu;broad.mit.edu	37	6	109763791	109763791	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	259	117	205	0	0	0	0	0	0
WTAP	9589	broad.mit.edu	37	6	160157288	160157288	+	Splice_Site	SNP	A	A	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	325	5	253	0	0	0	0	0	0
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	20199090	20199090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	124	22	88	1	4	4	0	0	0
HECW1	23072	broad.mit.edu	37	7	43519234	43519234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	283	8	234	0	0	0	0	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117407188	117407188	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	210	5	129	0	1	1	0	0	0
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	136700056	136700056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	145	26	120	0	0	0	0	0	0
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	151372582	151372582	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	118	49	113	1	0	0	0	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	151879016	151879016	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	722	115	536	0	5	5	0	0	0
ERLIN2	11160	broad.mit.edu	37	8	37597912	37597912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	498	25	390	0	22	22	0	0	0
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	53028901	53028901	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	175	69	139	0	0	0	0	0	0
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	53028912	53028912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	160	60	124	1	0	0	0	0	0
GRHL2	79977	broad.mit.edu	37	8	102631907	102631907	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	264	8	171	0	30	30	0	0	0
VLDLR	7436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	2651933	2651933	+	Missense_Mutation	SNP	G	G	A	rs183359461	alternate_allele	TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	177	50	123	2	5	4	1	0	0
TYRP1	7306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	12704628	12704628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	380	111	188	0	0	0	0	0	0
C9orf24	84688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	34397497	34397497	+	Silent	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	308	87	215	0	2	2	0	0	0
ALDH1B1	219	hgsc.bcm.edu;broad.mit.edu	37	9	38396007	38396007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	313	22	221	0	5	5	0	0	0
CAMSAP1	157922	ucsc.edu	37	9	138713398	138713398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	57	3	103	1	9	6	3	0	0
C9orf69	90120	hgsc.bcm.edu	37	9	139008746	139008746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	4	3	6	1	1	1	0	0	0
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	123176469	123176469	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	98	85	63	0	8	1	7	0	0
IL9R	3581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	155232601	155232601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	236	84	282	1	0	0	0	0	0
GRM1	2911	broad.mit.edu	37	6	146350671	146350672	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	339	6	339	0	0	0	0	0	0
