Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CPSF3L	54973	hgsc.bcm.edu	37	1	1247676	1247676	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	5	3	1	0	103	39	64	0	0
ECE1	1889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21585300	21585300	+	Silent	SNP	G	G	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	106	35	106	0	2	1	1	0	0
CELA3A	10136	hgsc.bcm.edu	37	1	22332192	22332192	+	Missense_Mutation	SNP	A	A	G	rs76835979		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	88	7	72	2	0	0	0	0	0
MAP3K6	9064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27682529	27682529	+	Silent	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	96	49	102	1	0	0	0	0	0
TINAGL1	64129	ucsc.edu	37	1	32049118	32049118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	63	4	61	0	212	212	0	0	0
SNIP1	79753	hgsc.bcm.edu	37	1	38019754	38019754	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	89	37	110	0	0	0	0	0	0
KCNC4	3749	hgsc.bcm.edu;broad.mit.edu	37	1	110768796	110768796	+	Silent	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	96	37	70	0	0	0	0	0	0
ITLN2	142683	hgsc.bcm.edu	37	1	160924190	160924190	+	Missense_Mutation	SNP	A	A	T	rs145856391	alternate_allele	TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	10	6	16	0	0	0	0	0	0
NIT1	4817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161090544	161090544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	85	33	110	0	20	4	16	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204438176	204438176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	534	6	478	0	0	0	0	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765	bysubmitter	TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	160	6	128	1	5	1	4	0	0
KAT6B	23522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	76602897	76602897	+	Silent	SNP	G	G	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	467	142	347	0	5	5	0	0	0
MRGPRE	116534	hgsc.bcm.edu	37	11	3249167	3249167	+	Missense_Mutation	SNP	C	C	T	rs78549252		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	7	5	6	2	0	0	0	0	0
SPON1	10418	broad.mit.edu	37	11	14276276	14276277	+	Splice_Site	DEL	GT	GT	-	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	97	7	108	0	0	0	0	0	0
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46897384	46897384	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	101	40	108	0	0	0	0	0	0
OR5I1	10798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55703836	55703836	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	85	34	88	0	0	0	0	0	0
RBM4	5936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66411450	66411450	+	Silent	SNP	T	T	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	161	59	136	0	36	17	18	1	0
FGF3	2248	broad.mit.edu	37	11	69625370	69625370	+	Silent	SNP	A	A	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	68	9	70	6	0	0	0	0	0
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877725	82877725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	154	72	166	0	16	2	14	0	0
C11orf65	160140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108276173	108276173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	107	49	98	0	0	0	0	0	0
ST3GAL4	6484	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	126278238	126278238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	82	25	126	2	37	17	20	0	0
LOC642846	0	bcgsc.ca	37	12	9464226	9464226	+	RNA	SNP	A	A	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	271	114	197	1	0	0	0	0	0
PRH1	5554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	11035282	11035282	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	311	80	244	0	1	0	1	0	0
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12317326	12317326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	238	82	172	0	6	6	0	0	0
KRT85	3891	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	52756665	52756665	+	Silent	SNP	C	C	G	rs1621938	byfrequency;alternate_allele	TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	199	67	144	1	0	0	0	0	0
PMEL	6490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56349929	56349929	+	Silent	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	168	90	133	1	5	3	2	0	0
DDX55	57696	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124093348	124093348	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	136	85	81	0	3	3	0	0	0
THSD1	55901	broad.mit.edu	37	13	52952408	52952408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	534	7	331	1	0	0	0	0	0
ARHGEF40	55701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21546590	21546590	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	168	44	238	0	6	3	3	0	0
ACIN1	22985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23564436	23564436	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	196	90	240	0	0	0	0	0	0
REC8	9985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24648037	24648037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	448	185	450	0	2	0	2	0	0
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	33291241	33291241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	121	50	127	0	1	0	1	0	0
GPR137C	283554	hgsc.bcm.edu	37	14	53019985	53019985	+	Silent	SNP	G	G	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	6	2	0	0	0	0	0	0	0
KIAA0586	9786	hgsc.bcm.edu	37	14	58910746	58910746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	38	2	46	0	0	0	0	0	0
LOC646214	0	broad.mit.edu;bcgsc.ca	37	15	21937891	21937891	+	RNA	SNP	T	T	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	911	128	907	0	0	0	0	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42448690	42448690	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	10	4	10	0	0	0	0	0	0
CORO2B	10391	ucsc.edu	37	15	69003090	69003090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	30	4	28	0	1	1	0	0	0
ZC3H7A	29066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	11859408	11859408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	246	72	186	0	6	4	2	0	0
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48173154	48173154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	238	67	174	0	0	0	0	0	0
RLTPR	146206	hgsc.bcm.edu	37	16	67681657	67681657	+	Silent	SNP	T	T	C	rs202004495		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	15	10	3	1	0	0	0	0	0
RNMTL1	55178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	694912	694912	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	365	202	349	1	27	12	15	0	0
RNMTL1	55178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	695133	695133	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	168	101	120	2	14	9	5	0	0
C17orf100	388327	hgsc.bcm.edu	37	17	6555543	6555543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	33	9	24	0	0	0	0	0	0
NEURL4	84461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7230249	7230249	+	Silent	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	210	116	154	0	10	3	7	0	0
MYH4	4622	broad.mit.edu	37	17	10356998	10356998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	686	6	542	0	0	0	0	0	0
LGALS9	3965	broad.mit.edu	37	17	25975916	25975916	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	510	4	359	1	156	156	0	0	0
MAP3K14	9020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43351921	43351921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	80	15	55	0	0	0	0	0	0
LRRC37A	9884	hgsc.bcm.edu	37	17	44409016	44409016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	390	121	316	0	50	46	4	0	0
CDC27	996	hgsc.bcm.edu	37	17	45214623	45214623	+	Missense_Mutation	SNP	G	G	A	rs75637741		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	166	12	144	1	0	0	0	0	0
CDC27	996	hgsc.bcm.edu	37	17	45219711	45219711	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	104	6	95	1	14	14	0	0	0
HLF	3131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	53398135	53398135	+	Silent	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	82	26	61	0	16	15	1	0	0
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62020429	62020429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	265	70	228	1	1	1	0	0	0
GNA13	10672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	63049838	63049838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	361	195	301	0	0	0	0	0	0
JUNB	3726	broad.mit.edu	37	19	12903546	12903546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	28	3	21	0	74	74	0	0	0
MAP4K3	8491	ucsc.edu	37	2	39553359	39553359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	361	1	326	0	9	9	0	0	0
RETSAT	54884	broad.mit.edu	37	2	85571180	85571180	+	Missense_Mutation	SNP	G	G	A	rs149307146		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	190	4	144	0	17	17	0	0	0
DARS	1615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	136680361	136680361	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	170	78	159	0	0	0	0	0	0
SCN7A	6332	hgsc.bcm.edu	37	2	167334164	167334164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	40	2	38	0	0	0	0	0	0
PPIG	9360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170460568	170460568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	127	46	113	0	8	7	1	0	0
ZAK	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	174097114	174097114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	330	160	348	0	0	0	0	0	0
AGPS	8540	broad.mit.edu	37	2	178402850	178402850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	235	4	262	0	26	26	0	0	0
PRKRA	8575	hgsc.bcm.edu	37	2	179307992	179307992	+	Splice_Site	SNP	A	A	T	rs201254634		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	114	10	97	2	1	1	0	0	0
TTN	7273	broad.mit.edu	37	2	179596083	179596083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	505	6	512	1	0	0	0	0	0
GLS	2744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	191827660	191827660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	119	50	117	0	60	18	42	0	0
CYP20A1	57404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204154489	204154489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	132	60	153	0	0	0	0	0	0
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242170343	242170343	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	99	42	109	0	206	103	103	0	0
CSNK2A1	1457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	467041	467041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	143	34	165	0	27	17	10	0	0
C20orf26	26074	broad.mit.edu	37	20	20269294	20269294	+	Silent	SNP	G	G	A	rs145397130		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	640	14	432	0	0	0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29625934	29625934	+	RNA	SNP	C	C	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	208	11	188	1	54	54	0	0	0
COL18A1	80781	hgsc.bcm.edu	37	21	46929449	46929449	+	Silent	SNP	C	C	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	9	5	6	2	32	16	16	0	0
ZNF501	115560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	44776081	44776081	+	Silent	SNP	A	A	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	200	62	128	0	0	0	0	0	0
ATXN7	6314	broad.mit.edu	37	3	63973881	63973881	+	Silent	SNP	G	G	A	rs190142927		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	438	7	309	0	4	4	0	0	0
PDZRN3	23024	hgsc.bcm.edu	37	3	73673578	73673578	+	Silent	SNP	G	G	C	rs6763344		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	2	2	0	0	0	0	0	0	0
RUVBL1	8607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127831784	127831784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	255	91	193	0	63	57	6	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228413	4228413	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	33	2	31	0	0	0	0	0	0
WDR19	57728	hgsc.bcm.edu	37	4	39188167	39188167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	27	2	44	0	0	0	0	0	0
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	85630153	85630153	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	210	92	233	0	0	0	0	0	0
LOC100133050	0	broad.mit.edu	37	5	99715417	99715417	+	RNA	SNP	A	A	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	17	2	14	0	0	0	0	0	0
PCDH1	5097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141233645	141233645	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	39	21	46	0	5	5	0	0	0
SLIT3	6586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	168135045	168135045	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	100	48	117	0	0	0	0	0	0
SPDL1	54908	broad.mit.edu	37	5	169023614	169023614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	158	3	187	0	5	5	0	0	0
SNRNP48	154007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7601644	7601644	+	Missense_Mutation	SNP	G	G	C	rs143226311	alternate_allele	TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	174	63	228	0	3	1	2	0	0
OR2B3	442184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29054989	29054989	+	Missense_Mutation	SNP	T	T	G	rs139090624	alternate_allele	TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	107	45	102	0	0	0	0	0	0
NOX3	50508	hgsc.bcm.edu;bcgsc.ca	37	6	155774565	155774565	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	471	81	597	0	0	0	0	0	0
CDK13	8621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	40127807	40127807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	208	97	105	0	22	14	8	0	0
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	101837159	101837159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	100	58	84	0	0	0	0	0	0
SLC13A1	6561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	122774491	122774491	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	156	72	88	0	7	3	4	0	0
SSPO	23145	broad.mit.edu	37	7	149493511	149493511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	335	7	188	0	0	0	0	0	0
PTPRN2	5799	hgsc.bcm.edu	37	7	157959683	157959683	+	Missense_Mutation	SNP	C	C	T	rs147292950		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	22	11	0	0	0	0	0	0	0
LOC286059	0	ucsc.edu	37	8	22938937	22938937	+	RNA	SNP	C	C	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	61	8	57	10	6	0	6	0	0
LOC286059	0	ucsc.edu	37	8	22938967	22938967	+	RNA	SNP	G	G	T	rs114340749	byfrequency;by1000genomes;alternate_allele	TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	52	6	32	3	10	0	3	0	7
TTI2	80185	broad.mit.edu	37	8	33369577	33369577	+	Silent	SNP	G	G	A	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	482	7	468	1	2	2	0	0	0
KDM4C	23081	ucsc.edu	37	9	7169908	7169908	+	Silent	SNP	C	C	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	64	4	66	0	0	0	0	0	0
LOC642236	0	bcgsc.ca	37	9	68427898	68427898	+	RNA	SNP	G	G	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	197	28	236	7	9	5	4	0	0
VPS13A	23230	hgsc.bcm.edu	37	9	79843042	79843042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	29	2	37	0	0	0	0	0	0
ALDOB	229	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	104190767	104190770	+	Frame_Shift_Del	DEL	TTTG	TTTG	-	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	TTTG	TTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	283	104	335	0	0	0	0	0	0
SPTAN1	6709	broad.mit.edu	37	9	131388186	131388186	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	225	17	224	10	380	375	4	0	1
MAGEB4	4115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	30261219	30261219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	26	23	57	0	0	0	0	0	0
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	32867885	32867885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	98	8	118	0	0	0	0	0	0
TSIX	9383	broad.mit.edu	37	X	73047124	73047125	+	RNA	DEL	AC	AC	-	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	130	8	114	0	0	0	0	0	0
XPNPEP2	7512	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	128885748	128885749	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	282	234	377	0	0	0	0	0	0
IL9R	3581	hgsc.bcm.edu	37	X	155235803	155235803	+	Missense_Mutation	SNP	C	C	G	rs150341783		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	102	13	129	1	0	0	0	0	0
SPG7	6687	broad.mit.edu	37	16	89613076	89613077	+	Frame_Shift_Ins	INS	-	-	GATTTTT	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	144	6	143	0	0	0	0	0	0
PKN1	5585	broad.mit.edu	37	19	14554306	14554307	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	23	8	13	0	0	0	0	0	0
MCCC2	64087	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	70931074	70931075	+	Splice_Site	INS	-	-	TA	novel		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	115	48	175	0	0	0	0	0	0
